Query 033349
Match_columns 121
No_of_seqs 105 out of 1211
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 99.9 4.4E-26 1.5E-30 147.9 11.5 112 1-120 1-112 (187)
2 4dkx_A RAS-related protein RAB 99.9 2.7E-25 9.3E-30 148.3 9.7 101 13-119 9-113 (216)
3 1ksh_A ARF-like protein 2; sma 99.9 1.1E-24 3.7E-29 141.0 11.4 111 1-120 3-114 (186)
4 1moz_A ARL1, ADP-ribosylation 99.9 1.6E-25 5.3E-30 144.4 7.3 113 1-120 1-114 (183)
5 2x77_A ADP-ribosylation factor 99.9 2.3E-25 7.8E-30 144.6 5.6 112 1-119 3-117 (189)
6 1m2o_B GTP-binding protein SAR 99.9 2.2E-23 7.6E-28 135.9 11.3 111 2-119 7-118 (190)
7 1zd9_A ADP-ribosylation factor 99.9 8.7E-23 3E-27 132.6 13.8 100 14-119 19-118 (188)
8 2b6h_A ADP-ribosylation factor 99.9 9.2E-24 3.2E-28 137.9 9.1 108 5-119 17-124 (192)
9 1fzq_A ADP-ribosylation factor 99.9 4.1E-23 1.4E-27 133.6 11.5 106 8-120 5-112 (181)
10 1f6b_A SAR1; gtpases, N-termin 99.9 1.6E-23 5.4E-28 137.4 9.1 107 6-119 13-120 (198)
11 4bas_A ADP-ribosylation factor 99.9 8.2E-23 2.8E-27 133.1 11.4 101 14-120 14-115 (199)
12 1r8s_A ADP-ribosylation factor 99.9 2.2E-22 7.4E-27 127.4 12.9 95 18-119 1-95 (164)
13 1upt_A ARL1, ADP-ribosylation 99.9 5.9E-22 2E-26 126.1 12.2 99 15-120 5-103 (171)
14 2h17_A ADP-ribosylation factor 99.9 1.9E-22 6.3E-27 130.2 8.8 98 15-119 19-116 (181)
15 2hxs_A RAB-26, RAS-related pro 99.9 1.9E-22 6.6E-27 129.2 8.8 100 14-119 3-107 (178)
16 3ihw_A Centg3; RAS, centaurin, 99.9 1.9E-21 6.5E-26 126.2 13.3 95 14-119 17-113 (184)
17 2h57_A ADP-ribosylation factor 99.9 2.6E-22 8.9E-27 130.4 9.0 99 15-119 19-118 (190)
18 1u8z_A RAS-related protein RAL 99.9 4.3E-21 1.5E-25 121.4 13.7 99 15-119 2-103 (168)
19 1ek0_A Protein (GTP-binding pr 99.9 2.9E-21 9.8E-26 122.5 12.7 98 16-119 2-103 (170)
20 2hup_A RAS-related protein RAB 99.9 1.7E-21 6E-26 127.9 11.7 98 16-119 28-129 (201)
21 1r2q_A RAS-related protein RAB 99.9 2.3E-21 7.8E-26 123.0 11.5 99 15-119 4-106 (170)
22 3c5c_A RAS-like protein 12; GD 99.9 2.4E-21 8.2E-26 125.8 11.6 99 14-119 18-119 (187)
23 1c1y_A RAS-related protein RAP 99.9 2.5E-21 8.6E-26 122.6 11.3 98 16-119 2-102 (167)
24 2efe_B Small GTP-binding prote 99.9 4.6E-21 1.6E-25 123.0 12.7 101 13-119 8-112 (181)
25 1kao_A RAP2A; GTP-binding prot 99.9 8.9E-21 3.1E-25 119.8 13.7 98 16-119 2-102 (167)
26 1z0f_A RAB14, member RAS oncog 99.9 4.7E-21 1.6E-25 122.5 12.3 101 12-118 10-114 (179)
27 1z06_A RAS-related protein RAB 99.9 5.5E-21 1.9E-25 124.0 12.4 99 15-119 18-121 (189)
28 2fn4_A P23, RAS-related protei 99.9 4.6E-21 1.6E-25 122.8 11.9 99 14-118 6-107 (181)
29 2a9k_A RAS-related protein RAL 99.9 1.1E-20 3.9E-25 121.5 13.8 100 14-119 15-117 (187)
30 3kkq_A RAS-related protein M-R 99.9 4.3E-21 1.5E-25 123.6 11.7 100 14-119 15-117 (183)
31 2atv_A RERG, RAS-like estrogen 99.9 5.4E-21 1.9E-25 124.7 12.3 102 11-119 22-126 (196)
32 2ew1_A RAS-related protein RAB 99.9 4.8E-21 1.6E-25 126.1 12.1 97 16-118 25-125 (201)
33 2bov_A RAla, RAS-related prote 99.9 1.2E-20 4E-25 123.5 13.9 101 13-119 10-113 (206)
34 3bc1_A RAS-related protein RAB 99.9 6.7E-21 2.3E-25 123.2 12.4 98 15-118 9-120 (195)
35 2p5s_A RAS and EF-hand domain 99.9 7.5E-21 2.6E-25 124.4 12.2 99 14-118 25-127 (199)
36 2fg5_A RAB-22B, RAS-related pr 99.9 8.7E-21 3E-25 123.5 12.4 98 15-118 21-122 (192)
37 2bme_A RAB4A, RAS-related prot 99.9 8E-21 2.7E-25 122.5 12.1 98 15-118 8-109 (186)
38 1z08_A RAS-related protein RAB 99.9 4E-21 1.4E-25 122.1 10.5 98 15-118 4-105 (170)
39 1wms_A RAB-9, RAB9, RAS-relate 99.9 8E-21 2.7E-25 121.5 11.9 98 15-118 5-106 (177)
40 1m7b_A RND3/RHOE small GTP-bin 99.9 3E-21 1E-25 124.8 9.9 99 14-118 4-106 (184)
41 3q3j_B RHO-related GTP-binding 99.9 2.6E-21 9E-26 128.3 9.9 97 16-118 26-126 (214)
42 3clv_A RAB5 protein, putative; 99.9 8.1E-21 2.8E-25 123.5 11.8 99 15-119 5-144 (208)
43 1z0j_A RAB-22, RAS-related pro 99.9 1.4E-20 4.7E-25 119.5 12.6 97 16-118 5-105 (170)
44 1x3s_A RAS-related protein RAB 99.9 8.7E-21 3E-25 123.0 11.7 98 16-119 14-115 (195)
45 2y8e_A RAB-protein 6, GH09086P 99.9 8.3E-21 2.8E-25 121.4 11.4 99 14-118 11-113 (179)
46 4dsu_A GTPase KRAS, isoform 2B 99.9 1.1E-20 3.6E-25 122.0 12.0 99 15-119 2-103 (189)
47 3t5g_A GTP-binding protein RHE 99.9 2.9E-21 1E-25 124.2 9.3 100 14-119 3-105 (181)
48 1z2a_A RAS-related protein RAB 99.9 2.7E-21 9.2E-26 122.6 9.0 99 15-119 3-105 (168)
49 2iwr_A Centaurin gamma 1; ANK 99.9 1.4E-20 4.8E-25 120.7 12.3 90 15-116 5-97 (178)
50 3tkl_A RAS-related protein RAB 99.9 1.2E-20 4E-25 122.6 12.1 98 15-118 14-115 (196)
51 3reg_A RHO-like small GTPase; 99.9 5E-21 1.7E-25 124.6 10.3 98 15-118 21-122 (194)
52 1zbd_A Rabphilin-3A; G protein 99.9 2.3E-20 7.9E-25 122.1 13.4 97 16-118 7-107 (203)
53 2erx_A GTP-binding protein DI- 99.9 1.6E-20 5.5E-25 119.3 12.3 97 16-118 2-101 (172)
54 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-20 4.6E-25 122.7 11.9 98 15-118 24-125 (192)
55 2oil_A CATX-8, RAS-related pro 99.9 9.5E-21 3.3E-25 123.1 11.1 98 16-119 24-125 (193)
56 2f7s_A C25KG, RAS-related prot 99.8 5.3E-21 1.8E-25 126.4 9.3 98 16-119 24-135 (217)
57 2a5j_A RAS-related protein RAB 99.8 8.1E-21 2.8E-25 123.4 10.0 99 15-119 19-121 (191)
58 1gwn_A RHO-related GTP-binding 99.8 7E-21 2.4E-25 125.6 9.8 98 15-118 26-127 (205)
59 2j0v_A RAC-like GTP-binding pr 99.8 6.1E-21 2.1E-25 125.8 9.2 98 15-118 7-108 (212)
60 3tw8_B RAS-related protein RAB 99.8 6.1E-21 2.1E-25 122.2 8.9 98 15-118 7-108 (181)
61 2fu5_C RAS-related protein RAB 99.8 1E-21 3.5E-26 126.5 5.3 98 16-119 7-108 (183)
62 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.2E-20 4.2E-25 121.4 10.3 98 15-118 3-104 (186)
63 2g6b_A RAS-related protein RAB 99.8 2E-20 6.9E-25 119.9 11.1 98 15-118 8-110 (180)
64 2ce2_X GTPase HRAS; signaling 99.8 4.8E-20 1.6E-24 116.2 12.7 97 16-118 2-101 (166)
65 1ky3_A GTP-binding protein YPT 99.8 7.4E-21 2.5E-25 121.9 9.0 99 14-118 5-108 (182)
66 1g16_A RAS-related protein SEC 99.8 5.5E-21 1.9E-25 121.3 8.2 97 16-118 2-102 (170)
67 3oes_A GTPase rhebl1; small GT 99.8 7.6E-21 2.6E-25 124.5 9.0 101 13-119 20-123 (201)
68 2q3h_A RAS homolog gene family 99.8 7.8E-21 2.7E-25 124.2 9.0 99 14-118 17-119 (201)
69 2bcg_Y Protein YP2, GTP-bindin 99.8 1.1E-20 3.6E-25 124.1 9.5 98 15-118 6-107 (206)
70 2atx_A Small GTP binding prote 99.8 6.9E-21 2.3E-25 123.9 8.5 98 15-118 16-117 (194)
71 3cph_A RAS-related protein SEC 99.8 1.9E-20 6.3E-25 123.2 10.3 98 15-118 18-119 (213)
72 2gf0_A GTP-binding protein DI- 99.8 4.3E-20 1.5E-24 120.2 11.8 97 15-117 6-105 (199)
73 2j1l_A RHO-related GTP-binding 99.8 1.8E-20 6.1E-25 124.1 10.2 98 15-118 32-133 (214)
74 4gzl_A RAS-related C3 botulinu 99.8 1.4E-20 4.7E-25 123.8 9.5 101 12-118 25-129 (204)
75 2yc2_C IFT27, small RAB-relate 99.8 2.3E-21 7.7E-26 126.9 5.4 99 15-119 18-124 (208)
76 3dz8_A RAS-related protein RAB 99.8 4.2E-21 1.4E-25 124.8 6.6 98 16-119 22-123 (191)
77 2gf9_A RAS-related protein RAB 99.8 2.5E-20 8.6E-25 120.8 10.2 98 16-119 21-122 (189)
78 3cpj_B GTP-binding protein YPT 99.8 1.7E-20 6E-25 124.8 9.2 98 15-118 11-112 (223)
79 3con_A GTPase NRAS; structural 99.8 7.8E-20 2.7E-24 118.4 12.0 99 14-118 18-119 (190)
80 1vg8_A RAS-related protein RAB 99.8 1.7E-20 6E-25 122.8 8.9 99 14-118 5-107 (207)
81 2o52_A RAS-related protein RAB 99.8 1.1E-20 3.7E-25 123.9 7.7 97 16-118 24-124 (200)
82 3q72_A GTP-binding protein RAD 99.8 3.9E-20 1.3E-24 117.2 9.9 96 17-119 2-100 (166)
83 2fv8_A H6, RHO-related GTP-bin 99.8 2.8E-20 9.6E-25 122.4 9.3 100 13-118 21-124 (207)
84 2gco_A H9, RHO-related GTP-bin 99.8 3.1E-20 1.1E-24 121.7 9.4 97 15-117 23-123 (201)
85 3bwd_D RAC-like GTP-binding pr 99.8 4.3E-21 1.5E-25 123.3 5.0 99 14-118 5-107 (182)
86 3cbq_A GTP-binding protein REM 99.8 5.4E-20 1.8E-24 120.4 10.1 99 15-119 21-124 (195)
87 3lvq_E ARF-GAP with SH3 domain 99.8 8.3E-20 2.8E-24 134.1 11.7 99 15-120 320-418 (497)
88 3gj0_A GTP-binding nuclear pro 99.8 6.3E-21 2.2E-25 126.6 5.2 100 14-119 12-115 (221)
89 3o47_A ADP-ribosylation factor 99.8 2.4E-20 8.1E-25 131.1 8.2 98 15-119 163-260 (329)
90 3r7w_A Gtpase1, GTP-binding pr 99.8 2.3E-19 7.9E-24 125.0 12.6 96 16-115 2-104 (307)
91 3q85_A GTP-binding protein REM 99.8 9.9E-20 3.4E-24 115.6 9.8 97 17-119 2-103 (169)
92 2zej_A Dardarin, leucine-rich 99.8 2E-20 6.8E-25 121.1 6.7 98 17-118 2-107 (184)
93 2nzj_A GTP-binding protein REM 99.8 2.3E-19 7.8E-24 114.4 11.1 98 15-119 2-105 (175)
94 4djt_A GTP-binding nuclear pro 99.8 3.1E-20 1.1E-24 122.8 6.8 99 14-118 8-111 (218)
95 3t1o_A Gliding protein MGLA; G 99.8 3.4E-20 1.2E-24 120.2 6.1 105 13-117 10-129 (198)
96 2fh5_B SR-beta, signal recogni 99.8 7E-19 2.4E-23 116.0 12.3 97 14-117 4-105 (214)
97 2f9l_A RAB11B, member RAS onco 99.8 1E-18 3.4E-23 114.3 10.5 96 16-117 4-103 (199)
98 3l0i_B RAS-related protein RAB 99.8 8.6E-21 3E-25 124.1 0.5 98 16-119 32-133 (199)
99 3th5_A RAS-related C3 botulinu 99.7 1.3E-20 4.3E-25 123.7 0.0 100 13-118 26-129 (204)
100 3r7w_B Gtpase2, GTP-binding pr 99.8 2.9E-19 9.8E-24 125.3 6.6 79 19-104 1-85 (331)
101 1oix_A RAS-related protein RAB 99.8 2.5E-18 8.6E-23 112.0 10.4 96 16-117 28-127 (191)
102 3llu_A RAS-related GTP-binding 99.8 6.9E-19 2.4E-23 114.8 7.2 96 13-117 16-123 (196)
103 2wkq_A NPH1-1, RAS-related C3 99.8 2.7E-18 9.4E-23 119.5 10.2 98 15-118 153-254 (332)
104 1nrj_B SR-beta, signal recogni 99.8 1E-18 3.4E-23 115.5 7.3 95 14-119 9-111 (218)
105 2g3y_A GTP-binding protein GEM 99.8 1.4E-17 4.7E-22 110.6 11.6 99 15-118 35-138 (211)
106 2ged_A SR-beta, signal recogni 99.7 1.1E-18 3.9E-23 113.1 5.3 93 15-118 46-146 (193)
107 2cjw_A GTP-binding protein GEM 99.7 9.9E-18 3.4E-22 109.3 9.0 99 15-118 4-107 (192)
108 2lkc_A Translation initiation 99.7 3.4E-18 1.2E-22 109.3 5.5 85 14-104 5-91 (178)
109 2wji_A Ferrous iron transport 99.7 1.7E-16 5.7E-21 100.9 12.8 93 16-117 2-104 (165)
110 2gj8_A MNME, tRNA modification 99.7 6E-17 2E-21 103.9 10.3 99 15-117 2-108 (172)
111 2dyk_A GTP-binding protein; GT 99.7 2E-16 7E-21 99.4 10.6 84 18-107 2-95 (161)
112 1svi_A GTP-binding protein YSX 99.7 1.7E-16 5.7E-21 102.9 9.5 95 14-115 20-131 (195)
113 2wjg_A FEOB, ferrous iron tran 99.7 3.9E-16 1.3E-20 100.6 11.2 96 14-118 4-109 (188)
114 2cxx_A Probable GTP-binding pr 99.7 5.2E-17 1.8E-21 104.7 6.9 90 18-115 2-104 (190)
115 2qu8_A Putative nucleolar GTP- 99.7 7.2E-16 2.5E-20 102.8 12.1 98 15-118 27-137 (228)
116 4fid_A G protein alpha subunit 99.7 1.1E-15 3.7E-20 107.8 11.8 69 52-120 145-223 (340)
117 3lxx_A GTPase IMAP family memb 99.7 2.3E-15 7.9E-20 101.0 12.4 87 14-106 26-127 (239)
118 3iev_A GTP-binding protein ERA 99.7 7.2E-15 2.4E-19 102.4 14.9 103 13-118 6-119 (308)
119 3def_A T7I23.11 protein; chlor 99.6 3.8E-15 1.3E-19 101.5 11.9 86 16-105 35-130 (262)
120 3ohm_A Guanine nucleotide-bind 99.6 3.8E-15 1.3E-19 104.5 11.7 69 52-120 151-229 (327)
121 3lxw_A GTPase IMAP family memb 99.6 6.6E-15 2.3E-19 99.6 12.5 107 9-117 13-132 (247)
122 3iby_A Ferrous iron transport 99.6 1.5E-15 5E-20 103.5 9.0 93 18-116 2-108 (256)
123 2xtp_A GTPase IMAP family memb 99.6 1.6E-14 5.3E-19 98.0 13.7 99 14-117 19-132 (260)
124 1wf3_A GTP-binding protein; GT 99.6 1.4E-14 4.9E-19 100.6 13.6 90 16-108 6-103 (301)
125 3dpu_A RAB family protein; roc 99.6 9.4E-16 3.2E-20 113.7 7.4 94 15-117 39-144 (535)
126 3pqc_A Probable GTP-binding pr 99.6 4.7E-15 1.6E-19 95.7 9.7 96 14-116 20-131 (195)
127 3a1s_A Iron(II) transport prot 99.6 5.5E-15 1.9E-19 100.7 10.4 95 15-118 3-107 (258)
128 1cip_A Protein (guanine nucleo 99.6 6.2E-15 2.1E-19 104.5 10.4 68 53-120 178-255 (353)
129 3c5h_A Glucocorticoid receptor 99.6 5.6E-17 1.9E-21 110.2 -0.2 102 15-119 17-192 (255)
130 3b1v_A Ferrous iron uptake tra 99.6 5.6E-15 1.9E-19 101.4 9.7 86 17-108 3-97 (272)
131 3i8s_A Ferrous iron transport 99.6 4.3E-15 1.5E-19 101.9 9.0 95 16-116 2-110 (274)
132 1mky_A Probable GTP-binding pr 99.6 2E-14 6.9E-19 104.3 12.2 94 19-115 3-107 (439)
133 4dhe_A Probable GTP-binding pr 99.6 1.4E-14 4.8E-19 95.7 9.3 91 14-106 26-130 (223)
134 3gee_A MNME, tRNA modification 99.6 6.1E-15 2.1E-19 108.1 7.9 99 16-117 232-341 (476)
135 3k53_A Ferrous iron transport 99.6 1.4E-14 4.9E-19 99.0 9.1 84 16-105 2-95 (271)
136 1azs_C GS-alpha; complex (lyas 99.6 7.6E-14 2.6E-18 100.3 12.3 67 54-120 203-279 (402)
137 1h65_A Chloroplast outer envel 99.5 3E-13 1E-17 92.4 14.3 86 16-104 38-132 (270)
138 1jny_A EF-1-alpha, elongation 99.5 7.4E-15 2.5E-19 106.6 6.6 98 14-112 3-127 (435)
139 1lnz_A SPO0B-associated GTP-bi 99.5 1.3E-14 4.6E-19 102.4 7.7 97 18-118 159-266 (342)
140 2hjg_A GTP-binding protein ENG 99.5 1.3E-14 4.6E-19 105.2 7.9 95 16-117 174-282 (436)
141 1xzp_A Probable tRNA modificat 99.5 2.3E-14 7.8E-19 105.2 7.6 92 16-110 242-342 (482)
142 2hjg_A GTP-binding protein ENG 99.5 2.2E-14 7.6E-19 104.0 7.3 86 17-109 3-100 (436)
143 1zun_B Sulfate adenylate trans 99.5 3.9E-13 1.3E-17 97.5 13.2 93 14-106 21-142 (434)
144 3sjy_A Translation initiation 99.5 5E-13 1.7E-17 96.1 13.6 100 14-116 5-123 (403)
145 1jal_A YCHF protein; nucleotid 99.5 1.1E-13 3.7E-18 98.4 9.9 82 18-103 3-108 (363)
146 3p26_A Elongation factor 1 alp 99.5 1.6E-13 5.3E-18 100.8 10.6 93 14-106 30-149 (483)
147 2c78_A Elongation factor TU-A; 99.5 4.5E-13 1.6E-17 96.3 12.2 101 14-115 8-121 (405)
148 3j2k_7 ERF3, eukaryotic polype 99.5 3.2E-13 1.1E-17 98.1 11.4 91 14-104 14-131 (439)
149 1dar_A EF-G, elongation factor 99.5 2.6E-13 8.8E-18 103.4 11.2 100 15-114 10-123 (691)
150 2qtf_A Protein HFLX, GTP-bindi 99.5 3.2E-13 1.1E-17 96.1 11.0 89 17-110 178-278 (364)
151 3tr5_A RF-3, peptide chain rel 99.5 1.6E-13 5.5E-18 101.7 9.5 98 16-113 12-127 (528)
152 2e87_A Hypothetical protein PH 99.5 4E-13 1.4E-17 95.2 10.9 100 15-118 165-275 (357)
153 1d2e_A Elongation factor TU (E 99.5 2.6E-13 9.1E-18 97.4 9.8 94 15-108 1-106 (397)
154 1s0u_A EIF-2-gamma, translatio 99.5 2.7E-13 9.4E-18 97.6 9.6 97 13-112 4-129 (408)
155 1kk1_A EIF2gamma; initiation o 99.5 4.2E-13 1.4E-17 96.6 10.4 95 14-111 7-130 (410)
156 1r5b_A Eukaryotic peptide chai 99.5 3.9E-14 1.3E-18 103.7 4.6 93 12-104 38-157 (467)
157 2xtz_A Guanine nucleotide-bind 99.5 2.3E-13 7.9E-18 96.5 8.3 66 55-120 164-245 (354)
158 3geh_A MNME, tRNA modification 99.5 7E-14 2.4E-18 102.2 5.5 98 16-117 223-328 (462)
159 4dcu_A GTP-binding protein ENG 99.4 7.9E-14 2.7E-18 101.7 5.6 86 16-104 22-115 (456)
160 1n0u_A EF-2, elongation factor 99.4 4.3E-13 1.5E-17 104.0 9.8 101 14-114 16-144 (842)
161 1wb1_A Translation elongation 99.4 3.4E-13 1.2E-17 99.0 8.8 95 16-110 18-118 (482)
162 3izq_1 HBS1P, elongation facto 99.4 4.5E-13 1.5E-17 100.8 9.1 90 15-104 165-281 (611)
163 2ohf_A Protein OLA1, GTP-bindi 99.4 2.8E-13 9.6E-18 97.1 7.3 91 15-109 20-134 (396)
164 2h5e_A Peptide chain release f 99.4 1.5E-12 5E-17 96.6 11.3 92 15-106 11-120 (529)
165 2elf_A Protein translation elo 99.4 4.3E-13 1.5E-17 95.6 8.1 82 19-114 23-104 (370)
166 2xex_A Elongation factor G; GT 99.4 7.2E-13 2.5E-17 101.0 9.7 100 14-113 7-120 (693)
167 1f60_A Elongation factor EEF1A 99.4 8.6E-13 3E-17 96.3 9.8 91 14-104 4-121 (458)
168 4dcu_A GTP-binding protein ENG 99.4 7.2E-13 2.4E-17 96.6 9.3 88 16-106 194-292 (456)
169 3cb4_D GTP-binding protein LEP 99.4 1.7E-12 5.9E-17 97.4 11.3 101 16-116 3-119 (599)
170 2ywe_A GTP-binding protein LEP 99.4 2.6E-12 8.9E-17 96.4 12.2 102 15-116 4-121 (600)
171 2rdo_7 EF-G, elongation factor 99.4 2.4E-12 8.3E-17 98.2 12.2 99 15-113 8-127 (704)
172 3qq5_A Small GTP-binding prote 99.4 1.4E-13 4.8E-18 99.6 5.1 98 14-114 31-136 (423)
173 1pui_A ENGB, probable GTP-bind 99.4 6.8E-13 2.3E-17 86.8 7.9 97 12-115 21-134 (210)
174 4a9a_A Ribosome-interacting GT 99.4 2.1E-12 7.3E-17 92.1 10.6 85 18-106 73-164 (376)
175 3t5d_A Septin-7; GTP-binding p 99.4 5.2E-12 1.8E-16 86.4 11.9 84 16-104 7-128 (274)
176 1wxq_A GTP-binding protein; st 99.4 1E-12 3.4E-17 94.5 8.0 87 18-104 1-114 (397)
177 2aka_B Dynamin-1; fusion prote 99.4 9E-12 3.1E-16 85.7 12.5 49 68-116 125-187 (299)
178 1mky_A Probable GTP-binding pr 99.4 4.1E-12 1.4E-16 92.2 10.4 90 17-109 180-281 (439)
179 1ega_A Protein (GTP-binding pr 99.4 8.9E-13 3E-17 91.6 6.6 85 16-103 7-100 (301)
180 2qpt_A EH domain-containing pr 99.4 7.2E-12 2.5E-16 93.3 11.0 101 16-118 64-215 (550)
181 3izy_P Translation initiation 99.4 1.6E-14 5.3E-19 107.2 -3.4 90 16-111 3-95 (537)
182 1g7s_A Translation initiation 99.3 4.6E-13 1.6E-17 100.5 4.1 95 16-112 4-117 (594)
183 2dby_A GTP-binding protein; GD 99.3 5.5E-12 1.9E-16 89.8 9.4 82 18-103 2-111 (368)
184 2dy1_A Elongation factor G; tr 99.3 7.3E-11 2.5E-15 89.6 14.4 95 14-108 6-114 (665)
185 1zo1_I IF2, translation initia 99.3 2.3E-13 7.7E-18 100.3 -0.2 93 15-111 2-97 (501)
186 3avx_A Elongation factor TS, e 99.3 9.5E-12 3.2E-16 98.7 8.6 92 14-105 293-396 (1289)
187 2j69_A Bacterial dynamin-like 99.3 3.8E-11 1.3E-15 91.6 11.2 48 69-116 175-225 (695)
188 3t34_A Dynamin-related protein 99.3 7.7E-11 2.6E-15 83.5 11.3 38 68-105 136-186 (360)
189 1jwy_B Dynamin A GTPase domain 99.3 3.8E-11 1.3E-15 83.2 9.4 36 68-103 131-179 (315)
190 2qag_A Septin-2, protein NEDD5 99.2 7.8E-12 2.7E-16 88.8 4.9 97 15-116 35-170 (361)
191 3mca_A HBS1, elongation factor 99.2 1.1E-12 3.8E-17 98.4 -0.2 90 14-103 174-290 (592)
192 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2.6E-10 8.8E-15 81.8 9.9 86 15-103 18-127 (392)
193 1zcb_A G alpha I/13; GTP-bindi 99.2 6E-11 2E-15 84.4 6.3 67 54-120 187-263 (362)
194 1udx_A The GTP-binding protein 99.1 2.9E-10 9.8E-15 82.2 9.8 95 18-117 158-260 (416)
195 3vqt_A RF-3, peptide chain rel 99.1 1E-09 3.6E-14 81.7 10.6 97 17-113 31-145 (548)
196 2x2e_A Dynamin-1; nitration, h 99.1 1.2E-09 4.2E-14 77.2 10.0 38 2-39 10-53 (353)
197 3j25_A Tetracycline resistance 98.9 2.3E-09 7.9E-14 81.1 6.1 87 18-104 3-103 (638)
198 2qnr_A Septin-2, protein NEDD5 98.9 2.3E-09 8E-14 74.3 5.6 24 16-39 17-40 (301)
199 2qag_C Septin-7; cell cycle, c 98.8 5.7E-09 1.9E-13 75.5 6.0 65 16-80 30-100 (418)
200 4fn5_A EF-G 1, elongation fact 98.8 7.8E-08 2.7E-12 73.6 11.6 91 17-107 13-124 (709)
201 2www_A Methylmalonic aciduria 98.7 5.7E-08 2E-12 68.7 8.6 40 66-108 165-204 (349)
202 1u0l_A Probable GTPase ENGC; p 98.7 9.6E-10 3.3E-14 76.3 -1.9 77 32-117 32-111 (301)
203 3p32_A Probable GTPase RV1496/ 98.7 2.7E-08 9.3E-13 70.4 5.4 39 66-107 170-208 (355)
204 2p67_A LAO/AO transport system 98.5 9.3E-08 3.2E-12 67.3 5.2 37 66-105 147-183 (341)
205 3zvr_A Dynamin-1; hydrolase, D 98.5 1.2E-06 4.1E-11 67.5 11.4 24 16-39 50-73 (772)
206 3cnl_A YLQF, putative uncharac 98.5 4.3E-08 1.5E-12 66.8 2.3 54 18-79 100-155 (262)
207 1puj_A YLQF, conserved hypothe 98.5 2.3E-07 7.7E-12 63.9 5.7 58 15-78 118-175 (282)
208 2qm8_A GTPase/ATPase; G protei 98.4 6.4E-07 2.2E-11 63.0 7.2 25 15-39 53-77 (337)
209 2j37_W Signal recognition part 98.3 6.8E-06 2.3E-10 60.8 10.6 24 16-39 100-123 (504)
210 1yrb_A ATP(GTP)binding protein 98.3 4E-06 1.4E-10 56.3 8.3 24 16-39 13-36 (262)
211 1f5n_A Interferon-induced guan 98.3 2.2E-06 7.4E-11 64.5 6.8 63 15-78 36-101 (592)
212 3ec1_A YQEH GTPase; atnos1, at 98.2 1.6E-06 5.6E-11 61.7 5.6 82 17-101 162-255 (369)
213 1bif_A 6-phosphofructo-2-kinas 98.2 1.5E-07 5E-12 68.9 0.0 92 14-113 36-141 (469)
214 3l82_B F-box only protein 4; T 98.2 7.7E-07 2.6E-11 58.9 2.6 112 5-120 4-156 (227)
215 3sop_A Neuronal-specific septi 98.1 9.3E-06 3.2E-10 55.4 6.2 24 17-40 2-25 (270)
216 2hf9_A Probable hydrogenase ni 98.0 2.6E-06 8.8E-11 56.0 2.9 26 14-39 35-60 (226)
217 3h2y_A GTPase family protein; 97.9 1.1E-05 3.9E-10 57.3 5.1 24 17-40 160-183 (368)
218 2qag_B Septin-6, protein NEDD5 97.9 3.6E-05 1.2E-09 55.8 6.8 24 16-39 41-64 (427)
219 3l2o_B F-box only protein 4; s 97.8 3.2E-06 1.1E-10 58.5 0.5 39 75-114 194-232 (312)
220 1ye8_A Protein THEP1, hypothet 97.8 1.5E-05 5E-10 51.2 3.5 23 18-40 1-23 (178)
221 1kgd_A CASK, peripheral plasma 97.8 1.5E-05 5E-10 51.0 3.2 23 18-40 6-28 (180)
222 3tif_A Uncharacterized ABC tra 97.8 2.4E-05 8.1E-10 52.4 4.2 22 18-39 32-53 (235)
223 1lvg_A Guanylate kinase, GMP k 97.7 1.8E-05 6.2E-10 51.4 3.2 23 18-40 5-27 (198)
224 3q5d_A Atlastin-1; G protein, 97.7 0.00026 8.9E-09 51.6 9.4 26 15-40 65-90 (447)
225 2onk_A Molybdate/tungstate ABC 97.7 4.5E-05 1.5E-09 51.2 4.6 22 18-39 25-46 (240)
226 3tr0_A Guanylate kinase, GMP k 97.7 2.5E-05 8.5E-10 50.4 3.2 23 18-40 8-30 (205)
227 3a00_A Guanylate kinase, GMP k 97.7 2.4E-05 8.4E-10 50.1 3.1 22 20-41 4-25 (186)
228 2pcj_A ABC transporter, lipopr 97.7 3.7E-05 1.3E-09 51.0 4.1 21 19-39 32-52 (224)
229 3gfo_A Cobalt import ATP-bindi 97.7 4E-05 1.4E-09 52.5 4.3 22 18-39 35-56 (275)
230 1b0u_A Histidine permease; ABC 97.7 4.4E-05 1.5E-09 51.8 4.3 21 19-39 34-54 (262)
231 2wsm_A Hydrogenase expression/ 97.7 4.1E-05 1.4E-09 50.0 4.0 27 14-40 27-53 (221)
232 4g1u_C Hemin import ATP-bindin 97.7 6.6E-05 2.3E-09 51.1 5.1 22 18-39 38-59 (266)
233 3c8u_A Fructokinase; YP_612366 97.7 3.8E-05 1.3E-09 50.1 3.7 26 15-40 20-45 (208)
234 1znw_A Guanylate kinase, GMP k 97.7 3E-05 1E-09 50.5 3.2 24 18-41 21-44 (207)
235 1s96_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 51.2 3.2 25 17-41 16-40 (219)
236 1zp6_A Hypothetical protein AT 97.6 3E-05 1E-09 49.6 3.0 23 17-39 9-31 (191)
237 1ex7_A Guanylate kinase; subst 97.6 3.4E-05 1.2E-09 49.9 3.2 22 20-41 4-25 (186)
238 1g6h_A High-affinity branched- 97.6 5.7E-05 1.9E-09 51.1 4.2 22 18-39 34-55 (257)
239 1z6g_A Guanylate kinase; struc 97.6 3.6E-05 1.2E-09 50.7 3.2 25 17-41 23-47 (218)
240 2olj_A Amino acid ABC transpor 97.6 5.3E-05 1.8E-09 51.6 4.1 22 18-39 51-72 (263)
241 1ji0_A ABC transporter; ATP bi 97.6 6E-05 2.1E-09 50.5 4.2 21 19-39 34-54 (240)
242 3tau_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 50.1 3.2 24 17-40 8-31 (208)
243 3ney_A 55 kDa erythrocyte memb 97.6 4.1E-05 1.4E-09 50.0 3.2 26 16-41 18-43 (197)
244 1tq4_A IIGP1, interferon-induc 97.6 0.00019 6.6E-09 51.8 6.9 24 17-40 69-92 (413)
245 2ff7_A Alpha-hemolysin translo 97.6 8.7E-05 3E-09 50.0 4.8 22 18-39 36-57 (247)
246 2bbw_A Adenylate kinase 4, AK4 97.6 4.9E-05 1.7E-09 50.8 3.5 22 17-38 27-48 (246)
247 2ixe_A Antigen peptide transpo 97.6 5.9E-05 2E-09 51.5 3.9 22 18-39 46-67 (271)
248 3fvq_A Fe(3+) IONS import ATP- 97.6 9.2E-05 3.2E-09 52.5 5.0 21 19-39 32-52 (359)
249 3asz_A Uridine kinase; cytidin 97.6 5.7E-05 2E-09 49.1 3.5 25 16-40 5-29 (211)
250 1sgw_A Putative ABC transporte 97.6 8.2E-05 2.8E-09 49.1 4.2 21 19-39 37-57 (214)
251 3nh6_A ATP-binding cassette SU 97.6 4E-05 1.4E-09 53.3 2.8 23 17-39 80-102 (306)
252 1aky_A Adenylate kinase; ATP:A 97.5 6.1E-05 2.1E-09 49.4 3.6 25 15-39 2-26 (220)
253 3tui_C Methionine import ATP-b 97.5 9.2E-05 3.1E-09 52.7 4.6 21 19-39 56-76 (366)
254 1kag_A SKI, shikimate kinase I 97.5 5.8E-05 2E-09 47.5 3.2 22 18-39 5-26 (173)
255 1jbk_A CLPB protein; beta barr 97.5 0.00013 4.6E-09 45.8 4.9 35 6-40 32-66 (195)
256 1mv5_A LMRA, multidrug resista 97.5 7.4E-05 2.5E-09 50.1 3.8 23 17-39 28-50 (243)
257 2qi9_C Vitamin B12 import ATP- 97.5 8.6E-05 3E-09 50.1 4.0 21 19-39 28-48 (249)
258 2qor_A Guanylate kinase; phosp 97.5 6.1E-05 2.1E-09 48.9 3.2 24 17-40 12-35 (204)
259 1htw_A HI0065; nucleotide-bind 97.5 6.3E-05 2.2E-09 47.4 3.2 27 15-41 31-57 (158)
260 3kb2_A SPBC2 prophage-derived 97.5 6.9E-05 2.3E-09 46.9 3.3 22 19-40 3-24 (173)
261 2yz2_A Putative ABC transporte 97.5 9.5E-05 3.2E-09 50.3 4.2 22 18-39 34-55 (266)
262 2ihy_A ABC transporter, ATP-bi 97.5 9.5E-05 3.2E-09 50.7 4.2 22 18-39 48-69 (279)
263 1vpl_A ABC transporter, ATP-bi 97.5 9.7E-05 3.3E-09 50.0 4.2 22 18-39 42-63 (256)
264 1g29_1 MALK, maltose transport 97.5 0.00015 5.1E-09 51.7 5.4 21 19-39 31-51 (372)
265 1knq_A Gluconate kinase; ALFA/ 97.5 9.2E-05 3.1E-09 46.7 3.8 24 16-39 7-30 (175)
266 2j41_A Guanylate kinase; GMP, 97.5 8.1E-05 2.8E-09 48.0 3.6 24 17-40 6-29 (207)
267 4gp7_A Metallophosphoesterase; 97.5 5.7E-05 2E-09 47.9 2.8 19 18-36 10-28 (171)
268 2v3c_C SRP54, signal recogniti 97.5 6.7E-05 2.3E-09 54.5 3.4 23 17-39 99-121 (432)
269 2f1r_A Molybdopterin-guanine d 97.5 2.6E-05 8.9E-10 49.8 1.1 21 19-39 4-24 (171)
270 2bdt_A BH3686; alpha-beta prot 97.5 7.3E-05 2.5E-09 47.8 3.2 21 19-39 4-24 (189)
271 3fb4_A Adenylate kinase; psych 97.5 7.9E-05 2.7E-09 48.6 3.4 22 18-39 1-22 (216)
272 3ec2_A DNA replication protein 97.5 9.3E-05 3.2E-09 47.0 3.6 25 16-40 37-61 (180)
273 4eun_A Thermoresistant glucoki 97.5 7.6E-05 2.6E-09 48.3 3.2 25 16-40 28-52 (200)
274 3dl0_A Adenylate kinase; phosp 97.5 8.3E-05 2.8E-09 48.5 3.4 22 18-39 1-22 (216)
275 3rlf_A Maltose/maltodextrin im 97.5 0.00013 4.5E-09 52.1 4.6 21 19-39 31-51 (381)
276 2bwj_A Adenylate kinase 5; pho 97.5 7.5E-05 2.6E-09 47.9 3.1 23 17-39 12-34 (199)
277 2pze_A Cystic fibrosis transme 97.5 7.1E-05 2.4E-09 49.8 3.1 21 19-39 36-56 (229)
278 2yyz_A Sugar ABC transporter, 97.5 0.00014 4.7E-09 51.7 4.6 21 19-39 31-51 (359)
279 1ly1_A Polynucleotide kinase; 97.5 8.6E-05 3E-09 46.8 3.2 22 18-39 3-24 (181)
280 2it1_A 362AA long hypothetical 97.5 0.00014 4.9E-09 51.6 4.6 21 19-39 31-51 (362)
281 1z47_A CYSA, putative ABC-tran 97.5 0.00014 4.8E-09 51.5 4.6 21 19-39 43-63 (355)
282 3lw7_A Adenylate kinase relate 97.4 7.8E-05 2.7E-09 46.5 3.0 20 18-37 2-21 (179)
283 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.6E-09 47.6 3.5 24 16-39 24-47 (199)
284 1v43_A Sugar-binding transport 97.4 0.00016 5.3E-09 51.6 4.6 22 18-39 38-59 (372)
285 1nks_A Adenylate kinase; therm 97.4 0.0001 3.5E-09 46.8 3.4 23 18-40 2-24 (194)
286 1qhx_A CPT, protein (chloramph 97.4 9.6E-05 3.3E-09 46.6 3.2 23 18-40 4-26 (178)
287 3dm5_A SRP54, signal recogniti 97.4 0.0012 4.2E-08 48.0 9.3 23 17-39 100-122 (443)
288 2if2_A Dephospho-COA kinase; a 97.4 9.7E-05 3.3E-09 47.7 3.3 22 18-39 2-23 (204)
289 3kl4_A SRP54, signal recogniti 97.4 0.0008 2.7E-08 48.9 8.3 23 17-39 97-119 (433)
290 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.4E-09 47.1 3.8 26 14-39 17-42 (201)
291 2yvu_A Probable adenylyl-sulfa 97.4 0.00013 4.5E-09 46.5 3.8 27 13-39 9-35 (186)
292 1j8m_F SRP54, signal recogniti 97.4 0.0011 3.7E-08 45.8 8.6 23 17-39 98-120 (297)
293 2jaq_A Deoxyguanosine kinase; 97.4 0.00011 3.9E-09 47.1 3.4 22 19-40 2-23 (205)
294 2p65_A Hypothetical protein PF 97.4 0.00016 5.3E-09 45.5 4.0 35 6-40 32-66 (187)
295 3cm0_A Adenylate kinase; ATP-b 97.4 0.00014 4.9E-09 46.1 3.9 23 17-39 4-26 (186)
296 3tlx_A Adenylate kinase 2; str 97.4 0.00014 4.8E-09 48.6 3.9 25 15-39 27-51 (243)
297 3uie_A Adenylyl-sulfate kinase 97.4 0.00016 5.3E-09 46.8 3.9 26 15-40 23-48 (200)
298 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.6E-09 47.5 3.1 24 17-40 18-41 (202)
299 1cke_A CK, MSSA, protein (cyti 97.4 0.00012 4E-09 48.0 3.4 22 18-39 6-27 (227)
300 2nq2_C Hypothetical ABC transp 97.4 9.8E-05 3.4E-09 49.9 3.0 21 19-39 33-53 (253)
301 2cbz_A Multidrug resistance-as 97.4 9.2E-05 3.2E-09 49.5 2.8 22 18-39 32-53 (237)
302 1kht_A Adenylate kinase; phosp 97.4 0.00013 4.6E-09 46.3 3.4 22 18-39 4-25 (192)
303 1u0l_A Probable GTPase ENGC; p 97.4 0.00023 8E-09 49.1 4.8 22 18-39 170-191 (301)
304 1y63_A LMAJ004144AAA protein; 97.4 0.00016 5.5E-09 46.2 3.7 26 15-40 8-33 (184)
305 2eyu_A Twitching motility prot 97.4 0.00012 4.1E-09 49.7 3.2 26 15-40 23-48 (261)
306 1oxx_K GLCV, glucose, ABC tran 97.4 0.00013 4.3E-09 51.7 3.4 22 18-39 32-53 (353)
307 2i3b_A HCR-ntpase, human cance 97.4 0.00012 4E-09 47.4 3.0 22 19-40 3-24 (189)
308 3b85_A Phosphate starvation-in 97.4 0.00011 3.6E-09 48.4 2.8 23 18-40 23-45 (208)
309 2rhm_A Putative kinase; P-loop 97.4 0.00016 5.6E-09 46.0 3.6 23 17-39 5-27 (193)
310 3sr0_A Adenylate kinase; phosp 97.4 0.00014 4.9E-09 47.7 3.4 22 18-39 1-22 (206)
311 2ehv_A Hypothetical protein PH 97.3 0.00012 4.2E-09 48.4 3.1 21 18-38 31-51 (251)
312 3d31_A Sulfate/molybdate ABC t 97.3 0.00013 4.5E-09 51.6 3.4 21 19-39 28-48 (348)
313 2pjz_A Hypothetical protein ST 97.3 0.00023 7.8E-09 48.4 4.4 21 19-39 32-52 (263)
314 1rz3_A Hypothetical protein rb 97.3 0.00032 1.1E-08 45.4 5.0 36 4-39 6-44 (201)
315 3b5x_A Lipid A export ATP-bind 97.3 0.00027 9.3E-09 53.0 5.2 23 17-39 369-391 (582)
316 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00013 4.4E-09 49.2 3.1 21 19-39 31-51 (250)
317 1ukz_A Uridylate kinase; trans 97.3 0.00018 6.1E-09 46.4 3.7 26 14-39 12-37 (203)
318 1jjv_A Dephospho-COA kinase; P 97.3 0.00016 5.6E-09 46.7 3.5 22 18-39 3-24 (206)
319 2zu0_C Probable ATP-dependent 97.3 0.00014 4.7E-09 49.5 3.2 22 18-39 47-68 (267)
320 3trf_A Shikimate kinase, SK; a 97.3 0.00017 5.7E-09 45.8 3.4 23 17-39 5-27 (185)
321 2v9p_A Replication protein E1; 97.3 0.00015 5.1E-09 50.4 3.3 26 15-40 124-149 (305)
322 2plr_A DTMP kinase, probable t 97.3 0.00019 6.5E-09 46.3 3.7 24 17-40 4-27 (213)
323 1e4v_A Adenylate kinase; trans 97.3 0.00015 5.2E-09 47.3 3.2 22 18-39 1-22 (214)
324 3lnc_A Guanylate kinase, GMP k 97.3 8E-05 2.7E-09 49.2 1.8 23 17-39 27-50 (231)
325 4a74_A DNA repair and recombin 97.3 0.00014 4.7E-09 47.6 3.0 22 18-39 26-47 (231)
326 2v54_A DTMP kinase, thymidylat 97.3 0.0002 6.8E-09 46.1 3.7 24 17-40 4-27 (204)
327 2ghi_A Transport protein; mult 97.3 0.00014 4.7E-09 49.3 3.0 22 18-39 47-68 (260)
328 2jeo_A Uridine-cytidine kinase 97.3 0.0002 6.9E-09 47.8 3.7 26 15-40 23-48 (245)
329 1zd8_A GTP:AMP phosphotransfer 97.3 0.00017 5.8E-09 47.5 3.3 23 17-39 7-29 (227)
330 3aez_A Pantothenate kinase; tr 97.3 0.00021 7.2E-09 49.7 3.8 27 14-40 87-113 (312)
331 1tev_A UMP-CMP kinase; ploop, 97.3 0.00021 7.3E-09 45.4 3.6 23 17-39 3-25 (196)
332 2rcn_A Probable GTPase ENGC; Y 97.3 0.00021 7.4E-09 50.7 3.8 22 18-39 216-237 (358)
333 1lw7_A Transcriptional regulat 97.3 0.00014 4.7E-09 51.5 2.8 24 17-40 170-193 (365)
334 2qt1_A Nicotinamide riboside k 97.3 0.00021 7.3E-09 46.3 3.5 25 16-40 20-44 (207)
335 1zak_A Adenylate kinase; ATP:A 97.3 0.00016 5.6E-09 47.4 3.0 25 16-40 4-28 (222)
336 2c95_A Adenylate kinase 1; tra 97.3 0.00022 7.5E-09 45.5 3.4 24 16-39 8-31 (196)
337 1np6_A Molybdopterin-guanine d 97.3 0.00021 7E-09 45.7 3.2 23 18-40 7-29 (174)
338 1nn5_A Similar to deoxythymidy 97.2 0.00022 7.7E-09 46.1 3.4 24 16-39 8-31 (215)
339 1uf9_A TT1252 protein; P-loop, 97.2 0.00026 8.7E-09 45.5 3.6 24 16-39 7-30 (203)
340 2pt5_A Shikimate kinase, SK; a 97.2 0.00024 8.3E-09 44.3 3.4 21 19-39 2-22 (168)
341 2vli_A Antibiotic resistance p 97.2 0.00016 5.6E-09 45.7 2.6 24 16-39 4-27 (183)
342 1gvn_B Zeta; postsegregational 97.2 0.00026 9E-09 48.6 3.7 25 16-40 32-56 (287)
343 2wwf_A Thymidilate kinase, put 97.2 0.00023 7.9E-09 46.0 3.3 24 16-39 9-32 (212)
344 1via_A Shikimate kinase; struc 97.2 0.00021 7.1E-09 45.1 3.0 21 19-39 6-26 (175)
345 3b60_A Lipid A export ATP-bind 97.2 0.00035 1.2E-08 52.4 4.6 23 17-39 369-391 (582)
346 1odf_A YGR205W, hypothetical 3 97.2 0.0003 1E-08 48.4 4.0 26 14-39 28-53 (290)
347 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00025 8.5E-09 50.4 3.5 25 15-39 31-55 (362)
348 3qf4_B Uncharacterized ABC tra 97.2 0.00025 8.6E-09 53.3 3.7 23 17-39 381-403 (598)
349 3be4_A Adenylate kinase; malar 97.2 0.00025 8.6E-09 46.4 3.3 24 16-39 4-27 (217)
350 3tqc_A Pantothenate kinase; bi 97.2 0.00039 1.3E-08 48.6 4.4 26 15-40 90-115 (321)
351 1ak2_A Adenylate kinase isoenz 97.2 0.0003 1E-08 46.5 3.7 25 15-39 14-38 (233)
352 2xb4_A Adenylate kinase; ATP-b 97.2 0.00028 9.7E-09 46.5 3.4 21 19-39 2-22 (223)
353 1xjc_A MOBB protein homolog; s 97.2 0.00032 1.1E-08 44.7 3.5 24 17-40 4-27 (169)
354 2gza_A Type IV secretion syste 97.2 0.00032 1.1E-08 49.7 3.8 25 16-40 174-198 (361)
355 2kjq_A DNAA-related protein; s 97.2 0.00021 7E-09 44.5 2.5 24 17-40 36-59 (149)
356 2yl4_A ATP-binding cassette SU 97.2 0.00036 1.2E-08 52.4 4.3 23 17-39 370-392 (595)
357 3szr_A Interferon-induced GTP- 97.2 0.00031 1.1E-08 53.0 3.9 21 19-39 47-67 (608)
358 2z0h_A DTMP kinase, thymidylat 97.2 0.00028 9.5E-09 45.1 3.2 22 19-40 2-23 (197)
359 2ze6_A Isopentenyl transferase 97.2 0.00027 9.3E-09 47.6 3.2 22 19-40 3-24 (253)
360 2pbr_A DTMP kinase, thymidylat 97.2 0.00031 1.1E-08 44.7 3.4 21 19-39 2-22 (195)
361 3iij_A Coilin-interacting nucl 97.2 0.00029 9.8E-09 44.6 3.2 23 17-39 11-33 (180)
362 4a82_A Cystic fibrosis transme 97.2 0.0002 6.9E-09 53.6 2.8 23 17-39 367-389 (578)
363 2yv5_A YJEQ protein; hydrolase 97.1 0.00026 8.9E-09 48.9 3.1 21 18-38 166-186 (302)
364 1sq5_A Pantothenate kinase; P- 97.1 0.00035 1.2E-08 48.3 3.7 26 15-40 78-103 (308)
365 2vp4_A Deoxynucleoside kinase; 97.1 0.00018 6.2E-09 47.6 2.2 26 15-40 18-43 (230)
366 1rj9_A FTSY, signal recognitio 97.1 0.00028 9.6E-09 48.9 3.2 24 17-40 102-125 (304)
367 1ixz_A ATP-dependent metallopr 97.1 0.0003 1E-08 47.0 3.2 20 20-39 52-71 (254)
368 3bos_A Putative DNA replicatio 97.1 0.00074 2.5E-08 44.1 5.1 25 16-40 51-75 (242)
369 2x8a_A Nuclear valosin-contain 97.1 0.00029 1E-08 48.0 3.2 20 20-39 47-66 (274)
370 2p5t_B PEZT; postsegregational 97.1 0.00026 8.9E-09 47.5 2.8 26 15-40 30-55 (253)
371 4e22_A Cytidylate kinase; P-lo 97.1 0.00036 1.2E-08 46.9 3.5 23 16-38 26-48 (252)
372 2pez_A Bifunctional 3'-phospho 97.1 0.00044 1.5E-08 43.8 3.7 24 16-39 4-27 (179)
373 2bbs_A Cystic fibrosis transme 97.1 0.00027 9.2E-09 48.7 2.8 22 18-39 65-86 (290)
374 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00038 1.3E-08 48.8 3.6 24 17-40 171-194 (330)
375 1qf9_A UMP/CMP kinase, protein 97.1 0.00045 1.5E-08 43.8 3.7 22 18-39 7-28 (194)
376 2chg_A Replication factor C sm 97.1 0.00064 2.2E-08 43.6 4.5 21 19-39 40-60 (226)
377 3jvv_A Twitching mobility prot 97.1 0.00048 1.6E-08 48.8 4.1 22 19-40 125-146 (356)
378 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.7E-09 47.7 0.7 22 19-40 2-23 (214)
379 4f4c_A Multidrug resistance pr 97.1 0.00032 1.1E-08 57.2 3.5 24 16-39 1104-1127(1321)
380 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00046 1.6E-08 46.5 3.7 23 17-39 4-26 (260)
381 1e6c_A Shikimate kinase; phosp 97.1 0.00041 1.4E-08 43.4 3.2 21 19-39 4-24 (173)
382 1vht_A Dephospho-COA kinase; s 97.1 0.00054 1.8E-08 44.7 3.8 23 17-39 4-26 (218)
383 3b9q_A Chloroplast SRP recepto 97.1 0.00038 1.3E-08 48.2 3.2 24 17-40 100-123 (302)
384 2iyv_A Shikimate kinase, SK; t 97.0 0.00043 1.5E-08 43.9 3.2 21 19-39 4-24 (184)
385 1uj2_A Uridine-cytidine kinase 97.0 0.00051 1.8E-08 46.0 3.7 25 15-39 20-44 (252)
386 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00042 1.4E-08 45.2 3.2 22 18-39 24-45 (235)
387 3gd7_A Fusion complex of cysti 97.0 0.00035 1.2E-08 50.1 2.9 22 18-39 48-69 (390)
388 2ewv_A Twitching motility prot 97.0 0.00066 2.3E-08 48.3 4.3 26 15-40 134-159 (372)
389 1in4_A RUVB, holliday junction 97.0 0.00041 1.4E-08 48.5 3.2 23 18-40 52-74 (334)
390 1d2n_A N-ethylmaleimide-sensit 97.0 0.001 3.4E-08 44.9 5.0 26 14-39 61-86 (272)
391 3h4m_A Proteasome-activating n 97.0 0.00076 2.6E-08 45.6 4.5 25 15-39 49-73 (285)
392 3umf_A Adenylate kinase; rossm 97.0 0.00046 1.6E-08 45.7 3.3 21 20-40 32-52 (217)
393 1iy2_A ATP-dependent metallopr 97.0 0.00044 1.5E-08 46.9 3.2 20 20-39 76-95 (278)
394 3kta_A Chromosome segregation 97.0 0.00046 1.6E-08 43.7 3.0 21 19-39 28-48 (182)
395 2f6r_A COA synthase, bifunctio 97.0 0.00059 2E-08 46.6 3.6 25 15-39 73-97 (281)
396 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00071 2.4E-08 50.4 4.2 23 18-40 48-70 (538)
397 1lv7_A FTSH; alpha/beta domain 96.9 0.00058 2E-08 45.7 3.3 24 17-40 45-68 (257)
398 3r20_A Cytidylate kinase; stru 96.9 0.00064 2.2E-08 45.4 3.5 24 16-39 8-31 (233)
399 3e70_C DPA, signal recognition 96.9 0.00073 2.5E-08 47.3 3.9 26 15-40 127-152 (328)
400 3qf4_A ABC transporter, ATP-bi 96.9 0.00057 1.9E-08 51.3 3.5 23 17-39 369-391 (587)
401 3pxg_A Negative regulator of g 96.9 0.00096 3.3E-08 48.8 4.6 35 7-41 191-225 (468)
402 4eaq_A DTMP kinase, thymidylat 96.9 0.00082 2.8E-08 44.6 3.9 26 16-41 25-50 (229)
403 4f4c_A Multidrug resistance pr 96.9 0.00063 2.1E-08 55.5 3.9 23 17-39 444-466 (1321)
404 3j16_B RLI1P; ribosome recycli 96.9 0.00073 2.5E-08 51.1 4.0 23 18-40 104-126 (608)
405 1m7g_A Adenylylsulfate kinase; 96.9 0.0009 3.1E-08 43.5 4.0 25 15-39 23-47 (211)
406 1t9h_A YLOQ, probable GTPase E 96.9 0.00012 4.2E-09 50.8 -0.2 23 17-39 173-195 (307)
407 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00047 1.6E-08 50.5 2.8 25 16-40 137-161 (460)
408 3ozx_A RNAse L inhibitor; ATP 96.9 0.00068 2.3E-08 50.5 3.7 25 16-40 24-48 (538)
409 2xxa_A Signal recognition part 96.9 0.0099 3.4E-07 43.1 9.7 23 17-39 100-122 (433)
410 2og2_A Putative signal recogni 96.9 0.00062 2.1E-08 48.3 3.2 25 16-40 156-180 (359)
411 1zuh_A Shikimate kinase; alpha 96.9 0.00073 2.5E-08 42.2 3.2 22 18-39 8-29 (168)
412 2cvh_A DNA repair and recombin 96.9 0.00068 2.3E-08 43.9 3.2 22 18-39 21-42 (220)
413 1cr0_A DNA primase/helicase; R 96.9 0.0006 2E-08 46.6 3.0 23 18-40 36-58 (296)
414 1n0w_A DNA repair protein RAD5 96.9 0.00071 2.4E-08 44.5 3.2 22 18-39 25-46 (243)
415 2oap_1 GSPE-2, type II secreti 96.9 0.00082 2.8E-08 49.8 3.8 22 18-39 261-282 (511)
416 2w58_A DNAI, primosome compone 96.9 0.00074 2.5E-08 43.4 3.2 23 18-40 55-77 (202)
417 3nwj_A ATSK2; P loop, shikimat 96.9 0.00065 2.2E-08 45.8 2.9 23 17-39 48-70 (250)
418 2obl_A ESCN; ATPase, hydrolase 96.9 0.00072 2.5E-08 47.7 3.3 24 16-39 70-93 (347)
419 3cf0_A Transitional endoplasmi 96.9 0.0013 4.4E-08 45.2 4.4 25 15-39 47-71 (301)
420 1njg_A DNA polymerase III subu 96.8 0.00077 2.6E-08 43.7 3.1 22 19-40 47-68 (250)
421 1p9r_A General secretion pathw 96.8 0.0012 4.2E-08 47.7 4.4 26 15-40 165-190 (418)
422 2yhs_A FTSY, cell division pro 96.8 0.00071 2.4E-08 50.0 3.2 25 16-40 292-316 (503)
423 3euj_A Chromosome partition pr 96.8 0.00073 2.5E-08 49.7 3.3 23 18-40 30-52 (483)
424 1ltq_A Polynucleotide kinase; 96.8 0.0008 2.8E-08 45.9 3.2 22 18-39 3-24 (301)
425 3bk7_A ABC transporter ATP-bin 96.8 0.001 3.5E-08 50.2 3.9 23 18-40 118-140 (607)
426 3ozx_A RNAse L inhibitor; ATP 96.8 0.00099 3.4E-08 49.6 3.5 21 19-39 296-316 (538)
427 2dpy_A FLII, flagellum-specifi 96.8 0.00091 3.1E-08 48.6 3.3 24 16-39 156-179 (438)
428 1p5z_B DCK, deoxycytidine kina 96.8 0.00061 2.1E-08 45.9 2.2 25 16-40 23-47 (263)
429 1nij_A Hypothetical protein YJ 96.8 0.00069 2.4E-08 47.1 2.5 20 20-39 7-26 (318)
430 3t15_A Ribulose bisphosphate c 96.8 0.00084 2.9E-08 46.1 2.9 25 16-40 35-59 (293)
431 2grj_A Dephospho-COA kinase; T 96.8 0.0013 4.6E-08 42.5 3.7 24 16-39 11-34 (192)
432 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0013 4.5E-08 43.8 3.8 23 17-39 39-61 (262)
433 4edh_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 43.1 3.8 24 17-40 6-29 (213)
434 3b9p_A CG5977-PA, isoform A; A 96.7 0.00096 3.3E-08 45.4 3.1 25 16-40 53-77 (297)
435 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0022 7.5E-08 45.5 4.9 26 14-39 21-46 (359)
436 3g5u_A MCG1178, multidrug resi 96.7 0.0011 3.8E-08 53.9 3.8 23 17-39 416-438 (1284)
437 3syl_A Protein CBBX; photosynt 96.7 0.0013 4.3E-08 45.0 3.6 26 15-40 65-90 (309)
438 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0014 4.9E-08 48.7 4.1 22 19-40 314-335 (538)
439 1q3t_A Cytidylate kinase; nucl 96.7 0.0014 4.6E-08 43.4 3.6 25 15-39 14-38 (236)
440 3bk7_A ABC transporter ATP-bin 96.7 0.0014 4.7E-08 49.6 3.9 22 19-40 384-405 (607)
441 3n70_A Transport activator; si 96.7 0.0013 4.4E-08 40.4 3.1 25 15-39 22-46 (145)
442 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.8E-08 41.1 2.9 20 20-39 26-45 (149)
443 3gmt_A Adenylate kinase; ssgci 96.7 0.0014 4.8E-08 43.8 3.4 24 16-39 7-30 (230)
444 1sxj_C Activator 1 40 kDa subu 96.7 0.002 6.8E-08 44.9 4.4 22 19-40 48-69 (340)
445 4b4t_M 26S protease regulatory 96.7 0.0022 7.6E-08 46.6 4.6 32 8-39 206-237 (434)
446 1l8q_A Chromosomal replication 96.7 0.0012 4.1E-08 45.6 3.1 23 17-39 37-59 (324)
447 1svm_A Large T antigen; AAA+ f 96.6 0.0012 4.1E-08 47.1 3.2 26 15-40 167-192 (377)
448 3v9p_A DTMP kinase, thymidylat 96.6 0.0013 4.3E-08 43.8 2.9 25 16-40 24-48 (227)
449 1sxj_D Activator 1 41 kDa subu 96.6 0.0022 7.7E-08 44.4 4.4 22 19-40 60-81 (353)
450 1sxj_E Activator 1 40 kDa subu 96.6 0.0016 5.4E-08 45.3 3.6 20 20-39 39-58 (354)
451 4ido_A Atlastin-1; GTPase, GTP 96.6 0.024 8.3E-07 41.4 9.8 95 16-110 66-190 (457)
452 4fcw_A Chaperone protein CLPB; 96.6 0.0019 6.5E-08 44.1 3.9 23 18-40 48-70 (311)
453 3ake_A Cytidylate kinase; CMP 96.6 0.0015 5.1E-08 42.0 3.2 21 19-39 4-24 (208)
454 1nlf_A Regulatory protein REPA 96.6 0.0013 4.6E-08 44.6 3.0 21 19-39 32-52 (279)
455 4b4t_L 26S protease subunit RP 96.6 0.0026 8.8E-08 46.3 4.6 32 8-39 206-237 (437)
456 2qby_A CDC6 homolog 1, cell di 96.6 0.0013 4.5E-08 45.9 3.0 24 16-39 44-67 (386)
457 3j16_B RLI1P; ribosome recycli 96.6 0.0018 6E-08 49.0 3.9 21 20-40 381-401 (608)
458 1a7j_A Phosphoribulokinase; tr 96.6 0.00086 3E-08 46.1 2.1 24 16-39 4-27 (290)
459 1tue_A Replication protein E1; 96.6 0.0016 5.6E-08 42.9 3.2 23 18-40 59-81 (212)
460 3pxi_A Negative regulator of g 96.6 0.0023 8E-08 49.3 4.6 35 6-40 190-224 (758)
461 1ofh_A ATP-dependent HSL prote 96.6 0.0015 5.3E-08 44.4 3.2 25 16-40 49-73 (310)
462 1fnn_A CDC6P, cell division co 96.6 0.0025 8.5E-08 44.6 4.3 22 19-40 46-67 (389)
463 3te6_A Regulatory protein SIR3 96.6 0.0016 5.3E-08 45.5 3.1 32 9-40 37-68 (318)
464 4b4t_K 26S protease regulatory 96.5 0.0029 9.9E-08 45.9 4.6 31 9-39 198-228 (428)
465 3crm_A TRNA delta(2)-isopenten 96.5 0.0017 5.7E-08 45.5 3.2 22 19-40 7-28 (323)
466 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0031 1.1E-07 48.5 4.9 35 6-40 196-230 (758)
467 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.5E-08 42.8 3.0 21 19-39 25-45 (247)
468 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.8E-08 45.7 3.2 23 18-40 8-30 (340)
469 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0017 5.9E-08 46.0 3.1 22 17-39 24-45 (365)
470 2qmh_A HPR kinase/phosphorylas 96.5 0.0018 6.2E-08 42.4 3.0 22 18-39 35-56 (205)
471 3zvl_A Bifunctional polynucleo 96.5 0.0019 6.6E-08 46.5 3.4 24 16-39 257-280 (416)
472 3a8t_A Adenylate isopentenyltr 96.5 0.0019 6.5E-08 45.5 3.1 22 19-40 42-63 (339)
473 4b4t_J 26S protease regulatory 96.4 0.003 1E-07 45.5 4.1 32 8-39 173-204 (405)
474 2px0_A Flagellar biosynthesis 96.4 0.0019 6.4E-08 44.6 3.0 24 17-40 105-128 (296)
475 3exa_A TRNA delta(2)-isopenten 96.4 0.0021 7.2E-08 44.9 3.2 22 19-40 5-26 (322)
476 2ocp_A DGK, deoxyguanosine kin 96.4 0.0025 8.7E-08 42.2 3.5 24 17-40 2-25 (241)
477 2r62_A Cell division protease 96.4 0.0012 4.2E-08 44.2 2.0 24 17-40 44-67 (268)
478 1vma_A Cell division protein F 96.4 0.0022 7.6E-08 44.5 3.2 24 17-40 104-127 (306)
479 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0021 7.1E-08 44.7 3.1 23 17-39 45-67 (322)
480 3uk6_A RUVB-like 2; hexameric 96.4 0.0038 1.3E-07 43.6 4.4 23 18-40 71-93 (368)
481 1pzn_A RAD51, DNA repair and r 96.4 0.002 7E-08 45.3 3.0 24 17-40 131-154 (349)
482 1iqp_A RFCS; clamp loader, ext 96.4 0.0044 1.5E-07 42.3 4.6 22 19-40 48-69 (327)
483 2qby_B CDC6 homolog 3, cell di 96.4 0.0039 1.3E-07 43.6 4.4 24 16-39 44-67 (384)
484 2v1u_A Cell division control p 96.4 0.002 6.8E-08 45.0 2.8 25 15-39 42-66 (387)
485 2qen_A Walker-type ATPase; unk 96.4 0.0025 8.5E-08 43.9 3.2 22 18-39 32-53 (350)
486 3foz_A TRNA delta(2)-isopenten 96.4 0.0025 8.6E-08 44.4 3.2 23 18-40 11-33 (316)
487 3eie_A Vacuolar protein sortin 96.3 0.0029 1E-07 43.8 3.5 23 17-39 51-73 (322)
488 3g5u_A MCG1178, multidrug resi 96.3 0.0031 1.1E-07 51.4 3.9 22 18-39 1060-1081(1284)
489 2fna_A Conserved hypothetical 96.3 0.0026 8.7E-08 43.9 3.0 22 19-40 32-53 (357)
490 3m6a_A ATP-dependent protease 96.3 0.0025 8.7E-08 47.4 3.1 24 17-40 108-131 (543)
491 1qvr_A CLPB protein; coiled co 96.3 0.0031 1.1E-07 49.3 3.6 34 7-40 181-214 (854)
492 3pfi_A Holliday junction ATP-d 96.3 0.0029 9.9E-08 43.8 3.2 24 16-39 54-77 (338)
493 2h92_A Cytidylate kinase; ross 96.3 0.003 1E-07 41.1 3.0 23 17-39 3-25 (219)
494 1tf7_A KAIC; homohexamer, hexa 96.2 0.0025 8.5E-08 47.2 2.9 19 20-38 42-60 (525)
495 4dzz_A Plasmid partitioning pr 96.2 0.035 1.2E-06 35.3 8.1 35 68-104 76-110 (206)
496 1um8_A ATP-dependent CLP prote 96.2 0.0032 1.1E-07 44.4 3.3 25 16-40 71-95 (376)
497 3hws_A ATP-dependent CLP prote 96.2 0.0031 1.1E-07 44.3 3.2 24 16-39 50-73 (363)
498 2iw3_A Elongation factor 3A; a 96.2 0.0015 5E-08 51.9 1.6 22 18-39 700-721 (986)
499 3cr8_A Sulfate adenylyltranfer 96.2 0.0019 6.4E-08 48.3 2.1 25 16-40 368-392 (552)
500 2bjv_A PSP operon transcriptio 96.2 0.0033 1.1E-07 42.1 3.2 25 16-40 28-52 (265)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.4e-26 Score=147.90 Aligned_cols=112 Identities=35% Similarity=0.670 Sum_probs=97.4
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||++++++++ ++.++.++|+++|++|+|||||++++.+ +.+. .+.+|.+.....+.+++..+.+||+||+++
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence 9999999999 7778899999999999999999999997 5555 677899988788888899999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+...+..+++++|++++|+|++++++|+.+..|+.+++.+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 112 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 9888899999999999999999999999999999988653
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=2.7e-25 Score=148.29 Aligned_cols=101 Identities=21% Similarity=0.400 Sum_probs=79.0
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHH
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~ 88 (121)
.+.+.+||+++|++|||||||+++|+. +.|...+.||+|.+. ..+..++ +.+.+|||+|++++..++..+
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~ 82 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSY 82 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHH
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHH
Confidence 455789999999999999999999999 889999999999764 3444555 679999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++.++++++|||+++++||+++..|+..+..
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~ 113 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRT 113 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 3
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=1.1e-24 Score=140.97 Aligned_cols=111 Identities=38% Similarity=0.651 Sum_probs=89.3
Q ss_pred ChhhHHHHHhhhcc-CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
|| +++ +++.+.+ ++.++|+++|++|+|||||++++.+ +. ...+.||.+.....+.+++..+.+||+||++
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSH
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCH
Confidence 55 444 5666665 7899999999999999999999987 44 5577899998888888888999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++...+..+++.+|++++|+|++++++++++..|+.+++.+
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 114 (186)
T 1ksh_A 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE 114 (186)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence 99988889999999999999999999999999999887653
No 4
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-25 Score=144.40 Aligned_cols=113 Identities=35% Similarity=0.647 Sum_probs=97.1
Q ss_pred ChhhHHHHHhhhcc-CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
||++++++++.++. ++.++|+++|++|+|||||++++.. +.+ ..+.+|++.....+.+++..+.+||+||++
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence 89999999998887 8899999999999999999999986 444 467789998878888888999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++...+..+++.+|++++|+|++++++++++..|+.+++.+
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~ 114 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcC
Confidence 88888888899999999999999999999999999988753
No 5
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=2.3e-25 Score=144.62 Aligned_cols=112 Identities=34% Similarity=0.592 Sum_probs=95.9
Q ss_pred ChhhHHHHHh--hhcc-CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC
Q 033349 1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 1 m~~~~~~~~~--~~~~-~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
||++++++++ .++. ++.+||+++|++|+|||||++++.. +.+. .+.||.+.....+.+++..+.+||+||
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDVV-TTVPTVGVNLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCCE-EECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCCC-CcCCCCceEEEEEEECCEEEEEEECCC
Confidence 8888888888 5566 7899999999999999999999976 4443 467888988788888899999999999
Q ss_pred CcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++...+..+++.+|++++|+|++++++++.+..|+.+++.
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 117 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD 117 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHT
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 998888888888999999999999999999999999988765
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=2.2e-23 Score=135.88 Aligned_cols=111 Identities=32% Similarity=0.574 Sum_probs=86.6
Q ss_pred hhhHHHHHhhh-ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 2 FSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
+..+.++++.+ ...+.+||+++|++|+|||||++++.+ +.+. .+.+|.+.....+.+++..+.+||+||++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 7 FGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN------DRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -----------------CEEEEEESTTSSHHHHHHHHHH------SCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred HHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc------CCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHH
Confidence 34444555554 345678999999999999999999998 4443 567899988888889999999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++..+..+++.+|++++|||++++++|+++..|+.+++.
T Consensus 80 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 118 (190)
T 1m2o_B 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118 (190)
T ss_dssp GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHc
Confidence 988888889999999999999999999999999988764
No 7
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.90 E-value=8.7e-23 Score=132.60 Aligned_cols=100 Identities=36% Similarity=0.707 Sum_probs=91.6
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.++.+||+++|++|+|||||++++.+ +.+...+.+|++.....+...+..+.+||+||++++...+..+++.+|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHc------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 45689999999999999999999998 667777889999988888888899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++++.+..|+.+++.
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~ 118 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLD 118 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988765
No 8
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=9.2e-24 Score=137.89 Aligned_cols=108 Identities=35% Similarity=0.671 Sum_probs=90.8
Q ss_pred HHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
+.++++.+..++.+||+++|++|+|||||++++.. +.+. .+.||++.....+...+..+.+||+||++++...
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 89 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPL 89 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTT
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHH
Confidence 44677777888999999999999999999999987 5554 4578899877778888899999999999999889
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+..+++.+|++++|||++++++|+.+..|+.+++.
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~ 124 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ 124 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988765
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=4.1e-23 Score=133.60 Aligned_cols=106 Identities=37% Similarity=0.668 Sum_probs=91.7
Q ss_pred HHhhhcc--CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHH
Q 033349 8 LWKYIFT--KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85 (121)
Q Consensus 8 ~~~~~~~--~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 85 (121)
++..+.+ ...++|+++|++|+|||||++++.+ ..+ ..+.||.|.....+.+++..+.+||++|++.++..+
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 77 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLAS------EDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 77 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCC------SCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhc------CCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHH
Confidence 3444444 5789999999999999999999987 333 357789998877888889999999999999999999
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
..+++.+|++++|||++++++|+++..|+.+++.+
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 112 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999887653
No 10
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=1.6e-23 Score=137.44 Aligned_cols=107 Identities=29% Similarity=0.499 Sum_probs=85.2
Q ss_pred HHHHhhh-ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 6 YGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 6 ~~~~~~~-~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
.++++.+ ...+.+||+++|++|+|||||++++.+ +.+. .+.||++.....+.+++..+.+||+||++.++..
T Consensus 13 ~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD------DRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 85 (198)
T ss_dssp CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCG
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc------CCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHH
Confidence 3445554 346789999999999999999999987 4443 5678888887888889999999999999998888
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+..+++.+|++++|||++++++|+++..|+.+++.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~ 120 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999988765
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.89 E-value=8.2e-23 Score=133.13 Aligned_cols=101 Identities=31% Similarity=0.600 Sum_probs=88.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-cccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.....||+++|++|+|||||+++|.+ +.+.. .+.+|++.....+...+..+.+||++|++++...+..+++.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 34679999999999999999999998 66666 678999988888888889999999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
|++++|||++++++|+.+..|+.+++.+
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKH 115 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988654
No 12
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=2.2e-22 Score=127.43 Aligned_cols=95 Identities=34% Similarity=0.720 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+||+++|++|+|||||++++.. +.+. .+.||.+.....+...+..+.+||+||++++...+..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH------HCSS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCcC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 5899999999999999999987 4444 35688887777777788999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHhhcc
Q 033349 98 VIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|||++++++|+.+..|+.+++.
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~ 95 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLA 95 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 13
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=5.9e-22 Score=126.07 Aligned_cols=99 Identities=37% Similarity=0.666 Sum_probs=88.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
++.++|+++|++|+|||||++++.. +.+. .+.||.+.....+.+++..+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 4579999999999999999999987 4443 46789998888888889999999999999999888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+++|+|++++++|+.+..|+..++.+
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~ 103 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEE 103 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887653
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=1.9e-22 Score=130.24 Aligned_cols=98 Identities=35% Similarity=0.641 Sum_probs=87.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.+.+||+++|++|+|||||++++.+ +.+ ..+.+|.+.....+.+++..+.+||++|++++...+..+++.+|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM------NEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT------TSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc------CCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3679999999999999999999998 555 567789998888888889999999999999999888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|+|++++++|+++..|+.+++.
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~ 116 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLA 116 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988765
No 15
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.88 E-value=1.9e-22 Score=129.20 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=85.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCce--EEEEEEECC---eEEEEEECCCCcchHHHHHHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN---SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~ 88 (121)
....+||+++|++|+|||||++++.+ +.+...+.+|++. ....+.+++ ..+.+||+||++.+...+..+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 76 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ------ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY 76 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG------GGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh------CcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH
Confidence 35689999999999999999999998 5555566788874 345667766 789999999999998899999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++.+|++++|||++++++++++..|+..+..
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 107 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887643
No 16
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=1.9e-21 Score=126.18 Aligned_cols=95 Identities=26% Similarity=0.290 Sum_probs=82.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+.+.+||+++|++|+|||||+++++. +.+...+.+|.+.....+.+++ ..+.+||++|++.+. +++.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 45789999999999999999999998 7777777788665556677777 668889999998876 7789
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+++..|+..+..
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 113 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCS 113 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 17
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=130.35 Aligned_cols=99 Identities=37% Similarity=0.677 Sum_probs=87.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+.+||+++|++|+|||||++++.+ +. +...+.+|.+.....+.+++..+.+||++|++.+...+..+++++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKP------SNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSC------GGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 4579999999999999999999987 33 4456778999888888888899999999999999999899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|+|++++++++.+..|+..++.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~ 118 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLN 118 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 18
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=4.3e-21 Score=121.36 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=82.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 75 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 75 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh------CccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhc
Confidence 3579999999999999999999998 666667778887665 3455666 579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++++.+..|+..+..
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (168)
T 1u8z_A 76 GEGFLCVFSITEMESFAATADFREQILR 103 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887753
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=2.9e-21 Score=122.52 Aligned_cols=98 Identities=24% Similarity=0.452 Sum_probs=85.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+.+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc
Confidence 468999999999999999999998 666667788888654 4555655 579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|+|++++++++++..|+..+..
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHE 103 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987753
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=127.87 Aligned_cols=98 Identities=26% Similarity=0.481 Sum_probs=78.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++.. ...+.+++ ..+.+||++|++++...+..+++.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhh------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 469999999999999999999998 66666777887754 35566666 689999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~ 129 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRK 129 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=2.3e-21 Score=122.98 Aligned_cols=99 Identities=23% Similarity=0.394 Sum_probs=85.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.. +.+...+.++.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 77 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR 77 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc
Confidence 4579999999999999999999998 666667778888664 3455554 67999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++++.+..|+..+..
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 106 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQR 106 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887653
No 22
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=125.83 Aligned_cols=99 Identities=23% Similarity=0.227 Sum_probs=80.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....+||+++|++|+|||||++++.+ +.+...+.+|++... ..+.+++ ..+.+||++|++++... ..+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~ 90 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLN 90 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHh
Confidence 45679999999999999999999998 667778889998765 3445555 67899999999877664 56889
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++|+++..|+..+..
T Consensus 91 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~ 119 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFDSSSSYLELLAL 119 (187)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=2.5e-21 Score=122.59 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=84.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+.+||+++|++|+|||||++++.+ +.+...+.+|.+.... .+.+++ ..+.+||+||++++...+..+++.+
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG 75 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence 468999999999999999999998 6677777888886653 344443 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++++.+..|+..+..
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~ 102 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILR 102 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877653
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=4.6e-21 Score=123.02 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=85.4
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHH
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~ 88 (121)
.....+||+++|++|+|||||++++.. ..+...+.+|++... ..+.+++ ..+.+||+||++++...+..+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 81 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVK------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHH------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHH
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHc------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHH
Confidence 345679999999999999999999998 666666777877554 3455555 679999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++.+|++++|||++++.+++.+..|+..+..
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 112 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQA 112 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987753
No 25
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=8.9e-21 Score=119.78 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=84.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 75 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 468999999999999999999998 666667777777543 4556666 4599999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++++.+..|+.+++.
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~ 102 (167)
T 1kao_A 76 QGFILVYSLVNQQSFQDIKPMRDQIIR 102 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=4.7e-21 Score=122.54 Aligned_cols=101 Identities=27% Similarity=0.363 Sum_probs=85.6
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHH
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEK 87 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~ 87 (121)
......+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHH
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHH
Confidence 3445689999999999999999999998 666667778877553 3455555 67999999999999999999
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 88 YYEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++.+|++++|||++++.+++.+..|+..+.
T Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 114 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDAR 114 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HhccCCEEEEEEeCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987764
No 27
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=5.5e-21 Score=123.98 Aligned_cols=99 Identities=29% Similarity=0.549 Sum_probs=85.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchH-HHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~-~~~~~~~ 89 (121)
.+.+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||+||++++. ..+..++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYY 91 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHh
Confidence 4679999999999999999999998 666667778887553 4566666 689999999999988 7888999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|++++|||++++++++.+..|+.++..
T Consensus 92 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 121 (189)
T 1z06_A 92 RNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121 (189)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887653
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=4.6e-21 Score=122.78 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=86.3
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....++|+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 79 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR 79 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh------CcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 44679999999999999999999998 666677888888765 3455666 57899999999999888899999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+.+++
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 107 (181)
T 2fn4_A 80 AGHGFLLVFAINDRQSFNEVGKLFTQIL 107 (181)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874
No 29
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=1.1e-20 Score=121.52 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=85.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
+...+||+++|++|+|||||++++.. ..+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 88 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR 88 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhc
Confidence 34679999999999999999999998 666667778887665 3455666 57999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++++.+..|+.++..
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 117 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILR 117 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
No 30
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=4.3e-21 Score=123.61 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=85.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....+||+++|++|+|||||++++.. +.+...+.+|.+... .....++ ..+.+||+||++.+...+..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 34689999999999999999999998 667777788888665 4455555 45778999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++|+.+..|+..+..
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 117 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILR 117 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887753
No 31
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.4e-21 Score=124.73 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=83.8
Q ss_pred hhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHH
Q 033349 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEK 87 (121)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~ 87 (121)
...+...+||+++|++|+|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||+||++. ...+..
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~ 94 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREG 94 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHH
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhh
Confidence 33456789999999999999999999998 6666777888887653 355665 6799999999988 777888
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 88 YYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++.+|++++|||++++++++.+..|+..+..
T Consensus 95 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~ 126 (196)
T 2atv_A 95 HMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 126 (196)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988877653
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.8e-21 Score=126.11 Aligned_cols=97 Identities=30% Similarity=0.548 Sum_probs=85.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred cceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 469999999999999999999998 667677788888664 4566666 579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++|+.+..|+..+.
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~ 125 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIE 125 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 33
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=123.49 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=87.2
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
.+...++|+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 83 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHH
Confidence 345679999999999999999999998 666667778888664 4556666 5799999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|++++|||++++++++.+..|+..+..
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 113 (206)
T 2bov_A 84 RSGEGFLCVFSITEMESFAATADFREQILR 113 (206)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888754
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.86 E-value=6.7e-21 Score=123.20 Aligned_cols=98 Identities=21% Similarity=0.391 Sum_probs=85.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE---EEEECC-----------eEEEEEECCCCcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSN-----------SKLVFWDLGGQPG 80 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~---~~~~~~-----------~~~~i~d~~g~~~ 80 (121)
...+||+++|++|+|||||++++.. +.+...+.+|++.... .+...+ ..+.+||+||++.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 4579999999999999999999998 6666677888887654 344443 4799999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 120 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998775
No 35
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=7.5e-21 Score=124.42 Aligned_cols=99 Identities=23% Similarity=0.475 Sum_probs=76.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
.+..+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 98 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYF 98 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH------CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHH
Confidence 34679999999999999999999998 666667778877553 4556666 6799999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.+|++++|||++++.+++.+..|+..+.
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~ 127 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIE 127 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999987664
No 36
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=8.7e-21 Score=123.47 Aligned_cols=98 Identities=26% Similarity=0.397 Sum_probs=85.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+.... .+.+++ ..+.+||+||++++...+..+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 4689999999999999999999998 6666678889887653 344443 68999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+..+.
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~ 122 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELK 122 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=8e-21 Score=122.49 Aligned_cols=98 Identities=27% Similarity=0.412 Sum_probs=85.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 3579999999999999999999998 666667778888654 4555666 68999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+..+.
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDAR 109 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 38
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=4e-21 Score=122.10 Aligned_cols=98 Identities=22% Similarity=0.432 Sum_probs=78.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence 4579999999999999999999998 666667778888664 3455555 57999999999999888888899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|+|++++++++.+..|+..+.
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 105 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELR 105 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987754
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=8e-21 Score=121.52 Aligned_cols=98 Identities=19% Similarity=0.396 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...++|+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHh
Confidence 4579999999999999999999998 666667788888764 4555666 58999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+..+.
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFI 106 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 40
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.86 E-value=3e-21 Score=124.85 Aligned_cols=99 Identities=25% Similarity=0.441 Sum_probs=83.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....+||+++|++|+|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||+||++.+...+..+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 77 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 77 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC
Confidence 34689999999999999999999998 6677777888886653 344444 67999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDS-KTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~-~~~l~~i~ 118 (121)
.+|++++|||++++++|+++ ..|+..+.
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~ 106 (184)
T 1m7b_A 78 DSDAVLICFDISRPETLDSVLKKWKGEIQ 106 (184)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 67876653
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.86 E-value=2.6e-21 Score=128.26 Aligned_cols=97 Identities=25% Similarity=0.391 Sum_probs=83.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
..+||+++|++++|||||+++|.. +.+...+.+|++.... .+.+++ ..+.+||++|++++...+..+++.+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 579999999999999999999998 7777788899987753 333444 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHH-HHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFED-SKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~-~~~~l~~i~ 118 (121)
|++++|||++++++|++ +..|+..+.
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~ 126 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEIL 126 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHH
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 578887764
No 42
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=8.1e-21 Score=123.51 Aligned_cols=99 Identities=22% Similarity=0.403 Sum_probs=85.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC-------------------------
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN------------------------- 67 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~------------------------- 67 (121)
+..+||+++|++|+|||||++++++ ..+...+.+|.+... ..+.+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVI 78 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETTC-------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccc
Confidence 4679999999999999999999998 666667788888654 3344443
Q ss_pred --------------eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 68 --------------SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 68 --------------~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~ 144 (208)
T 3clv_A 79 ITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI 144 (208)
T ss_dssp ------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999999999999999887753
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=1.4e-20 Score=119.47 Aligned_cols=97 Identities=24% Similarity=0.414 Sum_probs=84.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+.+||+++|++|+|||||++++.+ +.+...+.++.+... ..+.+.+ ..+.+||+||++++...+..+++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 78 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG 78 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcC
Confidence 579999999999999999999998 666667788888664 3455555 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++.+++.+..|+..+.
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~ 105 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELR 105 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 44
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=8.7e-21 Score=123.03 Aligned_cols=98 Identities=28% Similarity=0.504 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+.+||+++|++++|||||++++.. ..+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 569999999999999999999998 666667788888664 3455555 679999999999998889999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++.+++.+..|+..+..
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 115 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELET 115 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=8.3e-21 Score=121.40 Aligned_cols=99 Identities=21% Similarity=0.426 Sum_probs=85.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+.+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 84 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 84 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHh
Confidence 34679999999999999999999998 666667778888654 4555666 5799999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.+|++++|+|++++.+++.+..|+..+.
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 113 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVR 113 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
No 46
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=1.1e-20 Score=121.98 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=81.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
++.+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 75 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 4689999999999999999999998 666667777776543 4455666 458889999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++++.+..|+..+..
T Consensus 76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (189)
T 4dsu_A 76 GEGFLCVFAINNTKSFEDIHHYREQIKR 103 (189)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.85 E-value=2.9e-21 Score=124.18 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=86.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
+...+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI 76 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh
Confidence 34679999999999999999999998 667778888888765 3455566 67899999999998888888899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++++.+..|+.++.+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 105 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLD 105 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887753
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=2.7e-21 Score=122.55 Aligned_cols=99 Identities=23% Similarity=0.467 Sum_probs=84.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR 76 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc
Confidence 4579999999999999999999998 666667788877553 4455555 57999999999998888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++++.+..|+..+..
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 105 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVA 105 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887753
No 49
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=1.4e-20 Score=120.68 Aligned_cols=90 Identities=21% Similarity=0.325 Sum_probs=75.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+.+||+++|++|+|||||++++.+ +.+.. +.||++... ..+.+++ ..+.+||++|+++ ..++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~ 72 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGW 72 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHh
Confidence 4689999999999999999999998 66655 678887654 4556666 5789999999987 357789
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
+|++++|||++++++|+.+..|+..
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~ 97 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQ 97 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHH
Confidence 9999999999999999999986544
No 50
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=122.60 Aligned_cols=98 Identities=29% Similarity=0.515 Sum_probs=85.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 3579999999999999999999998 677777788888654 4566666 67999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+..+.
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 115 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEID 115 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987764
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=5e-21 Score=124.60 Aligned_cols=98 Identities=23% Similarity=0.353 Sum_probs=84.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+..+||+++|++|+|||||++++.+ +.+...+.+|.+.... .+.+++ ..+.+||+||++++...+..++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 94 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK------GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD 94 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc------CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence 4679999999999999999999998 6777788899987753 455555 567999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHH-HHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDS-KTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~-~~~l~~i~ 118 (121)
+|++++|||++++++|+++ ..|+..+.
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 122 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIK 122 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 56776553
No 52
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=2.3e-20 Score=122.13 Aligned_cols=97 Identities=26% Similarity=0.398 Sum_probs=84.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+...+ ..+.+||+||++++...+..+++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG 80 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcC
Confidence 468999999999999999999998 666667788888664 3445554 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++++.+..|+..+.
T Consensus 81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~ 107 (203)
T 1zbd_A 81 AMGFILMYDITNEESFNAVQDWSTQIK 107 (203)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.6e-20 Score=119.25 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=82.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
..+||+++|++|+|||||++++.+ +.+...+.+|.+.... .+...+ ..+.+||+||++++...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG 75 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC
Confidence 468999999999999999999998 6666677788886653 334444 5799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
|++++|||++++++++.+..|+..+.
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~ 101 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQIC 101 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 99999999999999999888876654
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=122.65 Aligned_cols=98 Identities=27% Similarity=0.472 Sum_probs=79.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||++|++++...+..+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 3579999999999999999999987 566666778887654 4566666 57999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++.+++.+..|+..+.
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~ 125 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMID 125 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887653
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=123.10 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=84.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+.+ ..+.+||+||++++...+..+++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 469999999999999999999998 666667778888654 3444444 679999999999998899999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++.+++.+..|+..+..
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~ 125 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYD 125 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887754
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=5.3e-21 Score=126.44 Aligned_cols=98 Identities=22% Similarity=0.424 Sum_probs=84.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEEC------------CeEEEEEECCCCcch
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPGL 81 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~i~d~~g~~~~ 81 (121)
..+||+++|++++|||||++++.. +.+...+.+|++.... .+.++ ...+.+||+||++++
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 469999999999999999999998 6666677788776542 34444 457999999999999
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~ 135 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCC
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=8.1e-21 Score=123.45 Aligned_cols=99 Identities=25% Similarity=0.370 Sum_probs=81.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+.. ...+.+++ ..+.+||+||++++...+..+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 3579999999999999999999998 66666667777754 34566666 68999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++++.+..|+..+..
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~ 121 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQ 121 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987653
No 58
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.85 E-value=7e-21 Score=125.58 Aligned_cols=98 Identities=26% Similarity=0.446 Sum_probs=83.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...+||+++|++|+|||||+++|.. +.+...+.+|.+.... .+.+++ ..+.+||++|++.+...+..+++.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 4579999999999999999999998 6777777888887653 344454 679999999999998888888999
Q ss_pred cCEEEEEEeCCCcccHHHH-HHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDS-KTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~-~~~l~~i~ 118 (121)
+|++++|||++++++|+++ ..|+..+.
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~ 127 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQ 127 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 67877653
No 59
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=6.1e-21 Score=125.75 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=82.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...+||+++|++|+|||||++++.. +.+...+.+|++.... .+.+++ ..+.+||+||++++...+..++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence 4679999999999999999999998 6677777888886543 445555 689999999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+|++++|||++++++|+++. .|+..+.
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~ 108 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELR 108 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 7887664
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=6.1e-21 Score=122.23 Aligned_cols=98 Identities=29% Similarity=0.524 Sum_probs=83.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.+ +.+...+.++.+... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 80 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc
Confidence 4579999999999999999999987 666667778887654 4566677 67999999999998888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++++++.+..|+..+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEIN 108 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 61
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=1e-21 Score=126.52 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=62.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp EEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 479999999999999999999987 666666778887654 4566676 789999999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 108 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEE 108 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=1.2e-20 Score=121.39 Aligned_cols=98 Identities=21% Similarity=0.352 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 76 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC
Confidence 4679999999999999999999998 666667778887654 3455555 568899999999998888888999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+|++++|||++++++++++. .|+..+.
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 104 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVR 104 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHH
Confidence 99999999999999999997 6877654
No 63
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2e-20 Score=119.94 Aligned_cols=98 Identities=31% Similarity=0.567 Sum_probs=76.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+..++|+++|++|+|||||++++.. +.+. ..+.+|.+.... .+.+++ ..+.+||+||++++...+..++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 81 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYY 81 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHc
Confidence 4679999999999999999999998 4443 456788887653 345565 5799999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.+|++++|+|++++.+++.+..|+..+.
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 110 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIH 110 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 64
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=4.8e-20 Score=116.18 Aligned_cols=97 Identities=20% Similarity=0.294 Sum_probs=82.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+.++|+++|++|+|||||++++.. +.+...+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 75 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh------CcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC
Confidence 368999999999999999999998 556666677777654 3455555 5689999999999989999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
|++++|||++++++++.+..|+..+.
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~ 101 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIK 101 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 65
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=7.4e-21 Score=121.91 Aligned_cols=99 Identities=26% Similarity=0.423 Sum_probs=71.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC-C--eEEEEEECCCCcchHHHHHHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~i~d~~g~~~~~~~~~~~ 88 (121)
.+..++|+++|++|+|||||++++.. ..+...+.+|.+... ..+.++ + ..+.+||+||++.+...+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 78 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHh------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence 34689999999999999999999998 666667777777543 445554 2 689999999999999998999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++.+|++++|||++++.+++.+..|+..+.
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFL 108 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=5.5e-21 Score=121.33 Aligned_cols=97 Identities=24% Similarity=0.462 Sum_probs=77.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 75 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred CceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc
Confidence 468999999999999999999998 666667777777554 4455555 579999999999988888899999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++++.+..|+..+.
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~ 102 (170)
T 1g16_A 76 AMGIILVYDITDERTFTNIKQWFKTVN 102 (170)
T ss_dssp EEEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 67
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=124.55 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=84.4
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEEC--CeEEEEEECCCCcchHHHHHHHh
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
...+.+||+++|++|+|||||++++.+ +.+...+.+|.+.... .+.+. +..+.+||+||++++...+..++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 93 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVE------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGT
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHH
Confidence 345789999999999999999999998 6777778888886652 23222 37799999999999888888999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|++++|||++++++++.+..|+..+..
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHE 123 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765
No 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=124.20 Aligned_cols=99 Identities=18% Similarity=0.297 Sum_probs=77.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT------NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence 44689999999999999999999998 566677788888665 3455666 56889999999998888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
++|++++|||++++++++++. .|+..+.
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 119 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 6887654
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=1.1e-20 Score=124.11 Aligned_cols=98 Identities=27% Similarity=0.507 Sum_probs=85.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 3579999999999999999999998 666667778887654 4566666 57999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++.+++.+..|+..+.
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~ 107 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEID 107 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 70
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.9e-21 Score=123.86 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=84.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence 3679999999999999999999998 666677788887654 3455555 679999999999998888899999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+|++++|||++++++|+.+. .|+..+.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 117 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELK 117 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 7887664
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.9e-20 Score=123.19 Aligned_cols=98 Identities=23% Similarity=0.466 Sum_probs=83.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...++|+++|++++|||||++++.. ..+...+.+|++... ..+.+++ ..+.+||+||++.+...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 3579999999999999999999998 666667778877553 4566677 67999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++.+++.+..|+..+.
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 119 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVN 119 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.3e-20 Score=120.21 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...++|+++|++|+|||||++++.. +.+...+.+|.+.... .+..++ ..+.+||+||++.+...+..+++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 79 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhcc
Confidence 4579999999999999999999998 6677777788886653 344444 579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+|++++|||++++++++.+..|+..+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i 105 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLI 105 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99999999999999999988877554
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=124.08 Aligned_cols=98 Identities=23% Similarity=0.407 Sum_probs=64.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+.+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 105 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD 105 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc
Confidence 3579999999999999999999997 666667778887654 3455665 579999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+|++++|||++++++|+.+. .|+..+.
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 133 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVN 133 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 6877653
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=1.4e-20 Score=123.83 Aligned_cols=101 Identities=21% Similarity=0.350 Sum_probs=80.5
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHH
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~ 88 (121)
....+.+||+++|++|+|||||+++++. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 98 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHH------SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHh------CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 3446789999999999999999999998 666667778887554 3444555 567799999999999888889
Q ss_pred hhccCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
++.+|++++|||++++++++++. .|+..+.
T Consensus 99 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 129 (204)
T 4gzl_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVR 129 (204)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 6776654
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=2.3e-21 Score=126.95 Aligned_cols=99 Identities=18% Similarity=0.285 Sum_probs=60.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCCcccCCCceE--EEEEEECC----eEEEEEECCCCcchHHHHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPDRIVPTVGLN--IGRIEVSN----SKLVFWDLGGQPGLRSIWE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~--~~~~~~~~t~~~~--~~~~~~~~----~~~~i~d~~g~~~~~~~~~ 86 (121)
...++|+++|++|+|||||++++.+ + .+...+.+|.+.. ...+.+++ ..+.+||+||++.+...+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 91 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS------KGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQIS 91 (208)
T ss_dssp EEEEEEEEC----------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh------CCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHH
Confidence 3568999999999999999999987 4 5566777888743 45566664 5799999999999999999
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+++.+|++++|||++++++|+.+..|+..+..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 124 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKS 124 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
No 76
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.2e-21 Score=124.81 Aligned_cols=98 Identities=26% Similarity=0.405 Sum_probs=83.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC--CeEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+... +..+.+||+||++.+...+..+++.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYAD------DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHH------HTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhc------CCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 469999999999999999999998 555556666666443 344444 3789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 123 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKT 123 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887753
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=2.5e-20 Score=120.84 Aligned_cols=98 Identities=26% Similarity=0.402 Sum_probs=84.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+...+ ..+.+||+||++.+...+..+++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 469999999999999999999998 666667778888654 3444554 679999999999988888899999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++++.+..|+..+..
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 122 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKT 122 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.7e-20 Score=124.76 Aligned_cols=98 Identities=24% Similarity=0.414 Sum_probs=79.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++++|||||+++|.. +.+...+.+|++... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 84 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR 84 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc
Confidence 4579999999999999999999998 666667777877543 4566666 68999999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++.+|+.+..|+..+.
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~ 112 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELR 112 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 79
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=7.8e-20 Score=118.40 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=73.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
..+.++|+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 91 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CT
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHc------CCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhC
Confidence 34679999999999999999999998 555566677777554 3455665 56999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.+|++++|||++++.+++++..|+..+.
T Consensus 92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 119 (190)
T 3con_A 92 TGEGFLCVFAINNSKSFADINLYREQIK 119 (190)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887764
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=1.7e-20 Score=122.83 Aligned_cols=99 Identities=24% Similarity=0.403 Sum_probs=83.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
.+..++|+++|++|+|||||++++.+ ..+...+.+|.+.... .+.+++ ..+.+||+||++.+...+..++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence 34689999999999999999999998 6666677888886643 444454 6799999999999888888889
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.+|++++|||++++.+++.+..|+..+.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 107 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFL 107 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=123.88 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=75.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|.+.. ...+.+++ ..+.+||+||++++...+..+++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHHh------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence 579999999999999999999998 56666667777754 34556666 689999999998888888889999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++++.+..|+..+.
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~ 124 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDAR 124 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 82
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=3.9e-20 Score=117.20 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||++++.+ .... ...++.+... ..+.+++ ..+.+||++|++.+...+..+++.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 74 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG------VEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD 74 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC------C-----------CEEEEEEEETTEEEEEEEEECC---------------CC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC------cccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCC
Confidence 58999999999999999999976 2222 3345555443 3445555 67899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+.+..|+..+..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (166)
T 3q72_A 75 AYVIVYSVTDKGSFEKASELRVQLRR 100 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 83
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.8e-20 Score=122.42 Aligned_cols=100 Identities=23% Similarity=0.360 Sum_probs=78.7
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
.+...+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 94 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSK------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHH------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGC
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhc------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence 345679999999999999999999998 666667778887665 3455666 5799999999999988888899
Q ss_pred hccCEEEEEEeCCCcccHHHH-HHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDS-KTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~-~~~l~~i~ 118 (121)
+.+|++++|||++++++++.+ ..|+..+.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 124 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVK 124 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 56776553
No 84
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=3.1e-20 Score=121.69 Aligned_cols=97 Identities=25% Similarity=0.376 Sum_probs=82.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 96 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD 96 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence 4579999999999999999999998 666667778887664 4456666 579999999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHH-HHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDS-KTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~-~~~l~~i 117 (121)
+|++++|||++++++++.+ ..|+..+
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~ 123 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEV 123 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 5676654
No 85
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=4.3e-21 Score=123.28 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=70.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....+||+++|++|+|||||++++.. +.+...+.+|.+.... .+.+++ ..+.+||+||++++...+..+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 78 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTS------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYR 78 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHH------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcc
Confidence 34679999999999999999999998 6666677777765432 233333 56789999999999888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
.+|++++|||++++++++++. .|+..+.
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 107 (182)
T 3bwd_D 79 GADVFILAFSLISKASYENVSKKWIPELK 107 (182)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 6877654
No 86
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=120.37 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=76.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc--eEEEEEEECC--eEEEEEECCCCcchHH-HHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~ 89 (121)
...+||+++|++|||||||+++|.+.. ..+ ...++.+ .....+.+++ ..+.+||++|++.+.. ++..++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 94 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQ----GDS--AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCL 94 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEE----CCG--GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhcc----CCc--cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhh
Confidence 367999999999999999999997511 111 1223333 3334556666 5789999999987654 777888
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|++++|||++++++|+.+..|+.++..
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~ 124 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988753
No 87
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=8.3e-20 Score=134.14 Aligned_cols=99 Identities=37% Similarity=0.742 Sum_probs=89.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
...+||+++|.+++|||||++++.. +.+. .+.+|++.....+.+.+..+.+|||+|++.+...+..+++.+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~------~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc------CCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 3579999999999999999999998 4443 45689999998888889999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+++|||++++++|+++..|+.+++.+
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~ 418 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIIND 418 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhh
Confidence 99999999999999999999888653
No 88
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=6.3e-21 Score=126.58 Aligned_cols=100 Identities=19% Similarity=0.402 Sum_probs=84.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE--EEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
....+||+++|++|+|||||+++++. +.+...+.+|.+..... +.+++ ..+.+||++|++.+...+..++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 85 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHH------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH
Confidence 44679999999999999999999776 55556778888876543 33444 6799999999999988889999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|++++|||++++.+++.+..|+..+..
T Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 115 (221)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 89
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=131.15 Aligned_cols=98 Identities=35% Similarity=0.723 Sum_probs=82.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
++.+||+++|++++|||||+++|.. +.+.. ..||++.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~------~~~~~-~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL------GEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS------SCCEE-EEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhC------CCCCC-cccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 4568999999999999999999987 44443 3479998888888889999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||++++++|+.+..|+.+++.
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~ 260 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLA 260 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHT
T ss_pred EEEEEECCchHHHHHHHHHHHHHHh
Confidence 9999999999999999998887764
No 90
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=2.3e-19 Score=125.00 Aligned_cols=96 Identities=20% Similarity=0.343 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC-CCcccCCCceEEEEEEE-CCeEEEEEECCCCcch-----HHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKY 88 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~ 88 (121)
..+||+++|++|+|||||++++.+... .+ ...+.+|++.....+.+ ++..+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~----~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYS----AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCC----TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC----CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 468999999999999999999987210 11 13567899988877776 4588999999999988 5677888
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHH
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALG 115 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~ 115 (121)
++++|++++|||++++++++++..|..
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~ 104 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAK 104 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHH
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHH
Confidence 899999999999999999999977644
No 91
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.82 E-value=9.9e-20 Score=115.62 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCc--ccCCCceEEEEEEECC--eEEEEEECCCCcchHH-HHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRS-IWEKYYEE 91 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~ 91 (121)
.+||+++|++|+|||||++++.+ ..+... ..++.......+.+++ ..+.+||++|++.+.. .+..+++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 75 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG------LQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT 75 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC------C------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHh------ccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc
Confidence 57999999999999999999986 222222 2233334445566666 6788999999998876 66777899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+.++..
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRA 103 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=2e-20 Score=121.12 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=73.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE-------CCeEEEEEECCCCcchHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------SNSKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
.+||+++|++|+|||||++++.+.. ..+...+.+|++.......+ ....+.+||++|++++...+..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~----~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTK----KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC----CccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 5799999999999999999998711 13445677888877654332 246899999999999988888999
Q ss_pred hccCEEEEEEeCCCc-ccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACP-SRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~-~s~~~~~~~l~~i~ 118 (121)
+.++++++|||++++ .+++.+..|+.++.
T Consensus 78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~ 107 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIK 107 (184)
T ss_dssp HHSEEEEEEEEGGGCHHHHHTHHHHHHHHH
T ss_pred cCCcEEEEEEeCCcchhHHHHHHHHHHHHH
Confidence 999999999999998 57999999998764
No 93
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=114.41 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=72.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcc--hHHHHHHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPG--LRSIWEKY 88 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~--~~~~~~~~ 88 (121)
...+||+++|++|+|||||++++.+ ..+... .++.+.. ...+.+++ ..+.+||++|++. +......+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 74 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAG------KQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESC 74 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC------C------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHT
T ss_pred ceEEEEEEECCCCccHHHHHHHHhc------CCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhh
Confidence 4679999999999999999999987 443322 2345543 34556666 5789999999887 45666778
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++.+|++++|||++++++|+.+..|+..+..
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~ 105 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGSFESASELRIQLRR 105 (175)
T ss_dssp TTSCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999887653
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=3.1e-20 Score=122.79 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=83.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC--C---eEEEEEECCCCcchHHHHHHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--N---SKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~---~~~~i~d~~g~~~~~~~~~~~ 88 (121)
....+||+++|++|+|||||++++++ +.+...+.+|.+......... + ..+.+||++|++.+...+..+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 81 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY 81 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH
Confidence 34679999999999999999999987 666677788888765443332 2 679999999999988888899
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++.+|++++|||++++.+++++..|+..+.
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQ 111 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=3.4e-20 Score=120.25 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC----CCCcccCCCceEEEEE---EECC--eEEEEEECCCCcchHH
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGRI---EVSN--SKLVFWDLGGQPGLRS 83 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~---~~~~--~~~~i~d~~g~~~~~~ 83 (121)
.....+||+++|++|+|||||++.+.+........ ....+.+|++.+.... .+++ ..+.+||+||++++..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 34568999999999999999997666521111000 0011345665554322 2222 6799999999999999
Q ss_pred HHHHHhhccCEEEEEEeCC------CcccHHHHHHHHHhh
Q 033349 84 IWEKYYEEAHAVVFVIDAA------CPSRFEDSKTALGKK 117 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~------~~~s~~~~~~~l~~i 117 (121)
.+..+++++|++++|||++ +.++|+.+..|+.++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 9999999999999999999 567888899999876
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=7e-19 Score=115.97 Aligned_cols=97 Identities=28% Similarity=0.390 Sum_probs=76.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC---CeEEEEEECCCCcchHH-HHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~ 89 (121)
++..+||+++|++|+|||||+++++. +.+...+.+ .......+.++ +..+.+||+||++.+.. .+..++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLT------GQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHH------SCCCCBCCC-CSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCcccccCC-cceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence 34679999999999999999999998 666666644 44555557776 57899999999999987 788889
Q ss_pred hccCEEEEEEeCCCcc-cHHHHHHHHHhh
Q 033349 90 EEAHAVVFVIDAACPS-RFEDSKTALGKK 117 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~-s~~~~~~~l~~i 117 (121)
+.+|++++|||+++.+ ++..+..|+.++
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 105 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQV 105 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHH
Confidence 9999999999999854 577776666554
No 97
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=1e-18 Score=114.35 Aligned_cols=96 Identities=27% Similarity=0.397 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..++++++|++|+|||||++++++ ..+...+.+|++... ..+.+++ ..+.+||++|++.++..+..+++.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence 368999999999999999999998 666667778877553 4566777 568899999999888888888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
++++++|+|++++.+++++..|+..+
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKEL 103 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99999999999999999988888665
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.79 E-value=8.6e-21 Score=124.11 Aligned_cols=98 Identities=30% Similarity=0.523 Sum_probs=80.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. ..+...+.++.+.. ...+.+++ ..+.+||+||++++...+..+++.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBC------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 579999999999999999999987 66666666666543 45666676 679999999999888888888999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 133 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDR 133 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987754
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.3e-20 Score=123.67 Aligned_cols=100 Identities=22% Similarity=0.370 Sum_probs=81.5
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
..++.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 99 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99 (204)
Confidence 446789999999999999999999987 555556667766443 2333343 5677999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+.+|++++|||++++++++++. .|+..+.
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~ 129 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVR 129 (204)
Confidence 9999999999999999999997 6776654
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.78 E-value=2.9e-19 Score=125.30 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=64.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---cccCCCceEEEEEEECCeEEEEEECCCCcchHH---HHHHHhhcc
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEA 92 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~ 92 (121)
||+++|++|+|||||++++.. +.+.. .+.||+|++...+. ..+++++|||+||++++. ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~------~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH------NMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS------CCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHc------CCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCC
Confidence 689999999999999998876 22222 36789998876542 337899999999999863 468889999
Q ss_pred CEEEEEEeCCCc
Q 033349 93 HAVVFVIDAACP 104 (121)
Q Consensus 93 ~~ii~v~d~~~~ 104 (121)
+++++|||++++
T Consensus 74 ~~~IlV~Ditd~ 85 (331)
T 3r7w_B 74 GALVYVIDSQDE 85 (331)
T ss_dssp SEEEEECCCSSC
T ss_pred CEEEEEEECCch
Confidence 999999999998
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=2.5e-18 Score=111.99 Aligned_cols=96 Identities=26% Similarity=0.387 Sum_probs=81.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..++++++|++|||||||++++.+ ..+...+.+|++... ..+.+++ ..+.+||++|++++...+..+++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 101 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence 468999999999999999999998 666667788888654 4566777 456779999999888888888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
++++++|+|+++..+++++..|+..+
T Consensus 102 ~~~~i~v~d~~~~~s~~~~~~~~~~~ 127 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYENVERWLKEL 127 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99999999999999999988888654
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=6.9e-19 Score=114.85 Aligned_cols=96 Identities=21% Similarity=0.348 Sum_probs=69.9
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE----EEEEEE---CCeEEEEEECCCCcchHHHH
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEV---SNSKLVFWDLGGQPGLRSIW 85 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~----~~~~~~---~~~~~~i~d~~g~~~~~~~~ 85 (121)
.++..+||+++|++|+|||||++++.+. +... +|.+.. .....+ ....+.+||++|++++....
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 86 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-------MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT 86 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-------CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-------CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh
Confidence 3457899999999999999999987751 1111 222211 122222 23789999999999887665
Q ss_pred ---HHHhhccCEEEEEEeCCCc--ccHHHHHHHHHhh
Q 033349 86 ---EKYYEEAHAVVFVIDAACP--SRFEDSKTALGKK 117 (121)
Q Consensus 86 ---~~~~~~~~~ii~v~d~~~~--~s~~~~~~~l~~i 117 (121)
..+++.+|++++|||++++ ++++.+..|+.++
T Consensus 87 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~ 123 (196)
T 3llu_A 87 FDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA 123 (196)
T ss_dssp CCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred hhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence 7889999999999999998 7778888888775
No 103
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.77 E-value=2.7e-18 Score=119.53 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+..++|+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+...+..+++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 226 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred cceeEEEEECCCCCChHHHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence 4579999999999999999999998 666777788887655 3455666 456799999999998888889999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+|++++|||++++.+++++. .|+..+.
T Consensus 227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 254 (332)
T 2wkq_A 227 TDVFLICFSLVSPASFHHVRAKWYPEVR 254 (332)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 6776553
No 104
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=1e-18 Score=115.54 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=75.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---cccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
....++|+++|++|+|||||++++.+ ..+.. .+.++.+.. +.+..+.+||+||++.++..+..+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHH------SSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc------CCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHH
Confidence 34679999999999999999999998 33322 223333221 14567999999999999888888887
Q ss_pred c----cCEEEEEEeCC-CcccHHHHHHHHHhhcc
Q 033349 91 E----AHAVVFVIDAA-CPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~----~~~ii~v~d~~-~~~s~~~~~~~l~~i~~ 119 (121)
. +|++++|+|++ +++++..+..|+.+++.
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~ 111 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHh
Confidence 7 89999999999 89999999999988764
No 105
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.4e-17 Score=110.57 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=73.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcc-hHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~ 89 (121)
...+||+++|++|+|||||+++|.+.. ..+...+ ++++.. ...+.+++ ..+.+||++|++. ...+...++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~----~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~ 109 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVH----DSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 109 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCC----CTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC----CCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence 356999999999999999999998511 2222233 334433 34566676 4678999999876 444556667
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.++++++|||++++++|+.+..|+..+.
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~ 138 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLR 138 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999987664
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=113.13 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=69.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---cccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
...++|+++|++|+|||||++++.+ ..+.. ...++.+. .+.+..+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT------DSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH------SSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc------CCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHh
Confidence 4678999999999999999999998 33222 22233222 2245779999999998876666666655
Q ss_pred ----cCEEEEEEeCC-CcccHHHHHHHHHhhc
Q 033349 92 ----AHAVVFVIDAA-CPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ----~~~ii~v~d~~-~~~s~~~~~~~l~~i~ 118 (121)
+|++++|+|++ +++++..+..|+.+++
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 146 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL 146 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHH
Confidence 89999999999 8999999999988775
No 107
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.74 E-value=9.9e-18 Score=109.31 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCce--EEEEEEECC--eEEEEEECCCCcc-hHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSN--SKLVFWDLGGQPG-LRSIWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~ 89 (121)
...+||+++|++|||||||+++|.+.. ..+...+. +.+. ....+.+++ ..+.+||++|++. .......++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~ 78 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVH----DSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM 78 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHS----CCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCc----CCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhc
Confidence 457999999999999999999998621 12222222 2332 234566676 4678999999765 333556677
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+.+|++++|||++++++|+.+..|+..+.
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~ 107 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLR 107 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999998877654
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=3.4e-18 Score=109.29 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=68.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc--eEEEEEEECCeEEEEEECCCCcchHHHHHHHhhc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.++.++|+++|++|+|||||++++.. +.+...+.++.. .....+.+++..+.+||+||++++...+..+++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH------SKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQV 78 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT------TCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhh
Confidence 34689999999999999999999988 444444444333 3334677788889999999999888777778889
Q ss_pred cCEEEEEEeCCCc
Q 033349 92 AHAVVFVIDAACP 104 (121)
Q Consensus 92 ~~~ii~v~d~~~~ 104 (121)
+|++++|+|++++
T Consensus 79 ~d~~i~v~d~~~~ 91 (178)
T 2lkc_A 79 TDIVILVVAADDG 91 (178)
T ss_dssp CCEEEEEEETTCC
T ss_pred CCEEEEEEECCCC
Confidence 9999999999884
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=1.7e-16 Score=100.92 Aligned_cols=93 Identities=24% Similarity=0.259 Sum_probs=65.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchH------HHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~ 87 (121)
..++++++|++|+|||||++++.+ ..+.....| |.......+.+++..+.+|||||++++. .+...
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC------CSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhC------CCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHH
Confidence 358999999999999999999987 222222223 3333445566778899999999987653 34455
Q ss_pred Hhh--ccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 88 YYE--EAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 88 ~~~--~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+++ .+|++++|+|+++.++ ...|+.++
T Consensus 76 ~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~ 104 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATALER---NLYLTLQL 104 (165)
T ss_dssp HHHHHCCSEEEEEEETTCHHH---HHHHHHHH
T ss_pred HHhcCCCCEEEEEecCCchhH---hHHHHHHH
Confidence 554 8999999999988543 34465554
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=6e-17 Score=103.86 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=67.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcch----HH----HHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RS----IWE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~~----~~~ 86 (121)
++..+|+++|++|+|||||++++.+.... ........|.......+.+++..+.+||+||+++. .. ...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAA---IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW 78 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCS---CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc---eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH
Confidence 35689999999999999999999872100 01111223344445667788888999999998642 11 112
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
.+++.+|++++|+|++++.+++. ..|+..+
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~ 108 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEF 108 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSH-HHHCHHH
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 35789999999999999988763 4565544
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=2e-16 Score=99.35 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC---CcccCCCceEEEEEEECCeEEEEEECCCCcc-------hHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEK 87 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~ 87 (121)
.||+++|++|+|||||++++.+ ..+. .....+.......+..++..+.+||+||+.. +...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH------CCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHH
Confidence 5899999999999999999987 2211 1222233444556777888999999999876 4566777
Q ss_pred HhhccCEEEEEEeCCCcccH
Q 033349 88 YYEEAHAVVFVIDAACPSRF 107 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~ 107 (121)
+++.+|++++|+|++++.+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~ 95 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQ 95 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCH
T ss_pred HHHhCCEEEEEEECCCcccH
Confidence 88999999999999986543
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=1.7e-16 Score=102.92 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=65.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCC----------Ccch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGG----------QPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g----------~~~~ 81 (121)
....++|+++|++|+|||||++++.+ +.+...+.++.+... .....+ ..+.+||+|| ++.+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLIN------RKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHT------C-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHH
Confidence 44679999999999999999999997 443444445444332 223333 3699999999 7777
Q ss_pred HHHHHHHhhcc---CEEEEEEeCCCcccHHHHH--HHHH
Q 033349 82 RSIWEKYYEEA---HAVVFVIDAACPSRFEDSK--TALG 115 (121)
Q Consensus 82 ~~~~~~~~~~~---~~ii~v~d~~~~~s~~~~~--~~l~ 115 (121)
...+..+++.+ |++++|+|++++.++.+.. .|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 131 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLK 131 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 78888888877 9999999999988877653 4544
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=3.9e-16 Score=100.64 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=70.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCC--ceEEEEEEECCeEEEEEECCCCcchH------HHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV--GLNIGRIEVSNSKLVFWDLGGQPGLR------SIW 85 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~ 85 (121)
+.+.++|+++|++|+|||||++++.+ ..+.....++. ......+.+++..+.+||+||++.+. ...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 77 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTG------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIA 77 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHH
Confidence 34678999999999999999999987 32222223333 34445677778999999999988663 455
Q ss_pred HHHhh--ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 86 EKYYE--EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 86 ~~~~~--~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
..++. .+|++++|+|.++ ++....|+..+.
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~ 109 (188)
T 2wjg_A 78 RDYIINEKPDLVVNIVDATA---LERNLYLTLQLM 109 (188)
T ss_dssp HHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHH
T ss_pred HHHHhccCCCEEEEEecchh---HHHHHHHHHHHH
Confidence 56664 4999999999875 566667776654
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=5.2e-17 Score=104.71 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC-----------CcchHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWE 86 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~ 86 (121)
+||+++|++|+|||||++++.+ ..+...+.++.......+.+. .+.+||+|| ++.+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG------KKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS------CCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC------cCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 6899999999999999999998 555555555555444445454 689999999 677788888
Q ss_pred HHhhc-cCEEEEEEeCCCcccHHHH-HHHHH
Q 033349 87 KYYEE-AHAVVFVIDAACPSRFEDS-KTALG 115 (121)
Q Consensus 87 ~~~~~-~~~ii~v~d~~~~~s~~~~-~~~l~ 115 (121)
.+++. ++++++|+++.|+.+++++ ..|..
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence 88887 8988889999899898887 56654
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=7.2e-16 Score=102.76 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=68.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--cccCCCceEEEEEEECCeEEEEEECCCC------cch---HH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RS 83 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~---~~ 83 (121)
...++|+++|++|+|||||+++|++ +.+.. ....|.......+...+..+.+||+||+ +.. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR------ANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT------TCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 3579999999999999999999987 33321 1122444555566667789999999998 431 12
Q ss_pred HHHHHhhccCEEEEEEeCCCcccHH--HHHHHHHhhc
Q 033349 84 IWEKYYEEAHAVVFVIDAACPSRFE--DSKTALGKKG 118 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~l~~i~ 118 (121)
.+..++..+|++++|||++++.+|+ ....|+..+.
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~ 137 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK 137 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHH
Confidence 3344568899999999999998865 3346666654
No 116
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.66 E-value=1.1e-15 Score=107.76 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=63.0
Q ss_pred ccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHhhccC
Q 033349 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 52 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~l~~i~~~ 120 (121)
+.+|+|+....+.++++.+++||++|+++++..|..++++++++++|||++ +.+++++...|+..++++
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 456788888888889999999999999999999999999999999999998 788999999999988765
No 117
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=2.3e-15 Score=101.04 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=62.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc----cCCCceEEEEEEECCeEEEEEECCCC-----------
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI----VPTVGLNIGRIEVSNSKLVFWDLGGQ----------- 78 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~d~~g~----------- 78 (121)
....++|+++|++|+|||||++++++ ..+.... ..|.......+.+++..+.+|||||.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILG------RKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHT------SCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcC------CCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHH
Confidence 34679999999999999999999998 3332222 23444555667788899999999993
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
+.+...+...++.+|++++|+|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH
Confidence 2344444555567899999999876433
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.65 E-value=7.2e-15 Score=102.38 Aligned_cols=103 Identities=24% Similarity=0.244 Sum_probs=76.2
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC-CeEEEEEECCCCcc----------h
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG----------L 81 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----------~ 81 (121)
++.+.-.++++|.+|+|||||++++++.. . .........|........... +.++.+|||||+.. +
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~--~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTK--V-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSC--C-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCC--c-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 34567889999999999999999998721 1 011122233444444556667 88999999999743 3
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
......+++.+|++++|+|++++.++++...|+..+.
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK 119 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH
Confidence 3566778899999999999999989888877777654
No 119
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=3.8e-15 Score=101.46 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=60.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc-CCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHh-----
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY----- 89 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~----- 89 (121)
+.++|+++|.+|+|||||++++++. . ..+...+. .|.......+..++..+.+|||||++.+......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~--~--~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE--Q--VVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS--C--CSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--C--CcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHH
Confidence 6899999999999999999999971 1 11122222 345555566778889999999999875532222222
Q ss_pred ----hccCEEEEEEeCCCcc
Q 033349 90 ----EEAHAVVFVIDAACPS 105 (121)
Q Consensus 90 ----~~~~~ii~v~d~~~~~ 105 (121)
..+|++++|+++++..
T Consensus 111 ~l~~~~~~~il~V~~~d~~~ 130 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYA 130 (262)
T ss_dssp HTTTCEECEEEEEEESSCSC
T ss_pred HHhcCCCCEEEEEEcCCCCC
Confidence 2789999999987654
No 120
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.63 E-value=3.8e-15 Score=104.54 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=61.8
Q ss_pred ccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHhhccC
Q 033349 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 52 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~l~~i~~~ 120 (121)
..||+|+....+.++++.+++||++|+++++..|..++++++++++|||++ +.++++++..|+..++++
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 457789888888899999999999999999999999999999999999654 678899999999998765
No 121
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.63 E-value=6.6e-15 Score=99.64 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=65.1
Q ss_pred HhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC--------cc
Q 033349 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PG 80 (121)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~--------~~ 80 (121)
+........++|+++|.+|+|||||++++++..... ........|.......+..++..+.+|||||. +.
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~--~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~ 90 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFF--SRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDP 90 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHST
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHHhCCCCcc--ccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHH
Confidence 333445678999999999999999999998721110 00001124555556677788899999999995 33
Q ss_pred hHHHHHHHh----hccCEEEEEEeCCCccc-HHHHHHHHHhh
Q 033349 81 LRSIWEKYY----EEAHAVVFVIDAACPSR-FEDSKTALGKK 117 (121)
Q Consensus 81 ~~~~~~~~~----~~~~~ii~v~d~~~~~s-~~~~~~~l~~i 117 (121)
+...+...+ +.+|++++|+|+++... -..+.+|+.++
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDM 132 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333333333 89999999999975322 22334555544
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.63 E-value=1.5e-15 Score=103.46 Aligned_cols=93 Identities=26% Similarity=0.217 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc--cCCCceEEEEEEECCeEEEEEECCCCcchHH----------HH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW 85 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~ 85 (121)
.+|+++|.+|+|||||++++++. ...... ..|.......+.+++..+.+||+||...+.. +.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~------~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~ 75 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA------NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA 75 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH
Confidence 47999999999999999999872 111112 2344445567777889999999999765532 55
Q ss_pred HHHh--hccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 86 ~~~~--~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
..++ +.+|++++|+|+++.++...+..++.+
T Consensus 76 ~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~ 108 (256)
T 3iby_A 76 AQSVIDLEYDCIINVIDACHLERHLYLTSQLFE 108 (256)
T ss_dssp HHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred HHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH
Confidence 6666 789999999999998777766666544
No 123
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.62 E-value=1.6e-14 Score=98.03 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=67.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc---CCCceEEEEEEECCeEEEEEECCCCcch---------
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLGGQPGL--------- 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~i~d~~g~~~~--------- 81 (121)
....++|+++|++|+|||||++++++.. .+..... .|.......+.+.+..+.+|||||....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYK 93 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSC-----CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCC-----CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHH
Confidence 3467999999999999999999998721 1222222 3445555567778899999999996542
Q ss_pred --HHHHHHHhhccCEEEEEEeCCCccc-HHHHHHHHHhh
Q 033349 82 --RSIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALGKK 117 (121)
Q Consensus 82 --~~~~~~~~~~~~~ii~v~d~~~~~s-~~~~~~~l~~i 117 (121)
.......++.+|++++|+|+++... ...+..|+.++
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2233446688999999999986333 23344555554
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.62 E-value=1.4e-14 Score=100.64 Aligned_cols=90 Identities=27% Similarity=0.252 Sum_probs=63.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc--------hHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~ 87 (121)
+..+++++|.+|+|||||++++++..-.. .......|.......+..++.++.+|||||..+ +......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i---vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP---ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC---CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee---ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 35679999999999999999999721110 011111222222234455678999999999765 4566677
Q ss_pred HhhccCEEEEEEeCCCcccHH
Q 033349 88 YYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~ 108 (121)
+++.+|++++|+|++++.+..
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~ 103 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE 103 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH
T ss_pred HHhcCCEEEEEEECCCCCChH
Confidence 889999999999999875544
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.61 E-value=9.4e-16 Score=113.68 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=68.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE--------EC----CeEEEEEECCCCcchH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------VS----NSKLVFWDLGGQPGLR 82 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~~----~~~~~i~d~~g~~~~~ 82 (121)
...+||+++|.+|+|||||++++++ ..+...+.+|++....... +. +..+.+||+||++.+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~------~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~ 112 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIG------ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH 112 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH
Confidence 4679999999999999999999998 6666777888887765331 12 3789999999999998
Q ss_pred HHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
.....+++++|++++|+|+++.+. ...|+..+
T Consensus 113 ~~~~~~l~~~d~ii~V~D~s~~~~---~~~~~~~l 144 (535)
T 3dpu_A 113 ASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHI 144 (535)
T ss_dssp TTCHHHHHSSEEEEEEECGGGGGG---HHHHHHHH
T ss_pred HHHHHHccCCcEEEEEEeCCCchh---HHHHHHHH
Confidence 888999999999999999987644 44555554
No 126
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=4.7e-15 Score=95.73 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=66.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECCeEEEEEECCC----------CcchH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG----------QPGLR 82 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~d~~g----------~~~~~ 82 (121)
....++|+++|++|+|||||++++.+ .. ...+.++.+.... .....+..+.+||+|| ++.+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFN------RK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHT------SC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHc------Cc-cccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHH
Confidence 34568999999999999999999987 32 1233344443221 1222245688999999 66677
Q ss_pred HHHHHHhhcc---CEEEEEEeCCCccc--HHHHHHHHHh
Q 033349 83 SIWEKYYEEA---HAVVFVIDAACPSR--FEDSKTALGK 116 (121)
Q Consensus 83 ~~~~~~~~~~---~~ii~v~d~~~~~s--~~~~~~~l~~ 116 (121)
..+..+++.+ |++++|+|.+++.+ ...+..|+..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 7778887776 99999999987644 3444556654
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.61 E-value=5.5e-15 Score=100.71 Aligned_cols=95 Identities=23% Similarity=0.186 Sum_probs=66.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc--cCCCceEEEEEEECCeEEEEEECCCCcchHH------HHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~ 86 (121)
...++|+++|++|+|||||++++++ ..+.... ..|+......+...+..+.+||+||+..+.. +..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~ 76 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIAR 76 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHH
Confidence 3578999999999999999999987 2221111 2344444455666788999999999875532 334
Q ss_pred HHh--hccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 87 KYY--EEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 87 ~~~--~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.++ ..+|++++|+|.++.++.. .|+.++.
T Consensus 77 ~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~ 107 (258)
T 3a1s_A 77 DYLLKGDADLVILVADSVNPEQSL---YLLLEIL 107 (258)
T ss_dssp HHHHHSCCSEEEEEEETTSCHHHH---HHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCCchhhHH---HHHHHHH
Confidence 554 4899999999999876543 3444443
No 128
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.60 E-value=6.2e-15 Score=104.50 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=61.8
Q ss_pred cCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHhhccC
Q 033349 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKKGSS 120 (121)
Q Consensus 53 ~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~l~~i~~~ 120 (121)
.+|+|+....+.+++..+++||++|++.++..|..++++++++|||||+++ .++++++..|+..++++
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 467888878888889999999999999999999999999999999999999 56799999999998765
No 129
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.6e-17 Score=110.20 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=66.0
Q ss_pred CceeEEEEEcCC---------CCCHHHHHHHHHhhccCCCCCCCCcccCCC-ceEE--EE----------------EEEC
Q 033349 15 KTEFHVLILGID---------KAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNI--GR----------------IEVS 66 (121)
Q Consensus 15 ~~~~~i~vvG~~---------~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~-~~~~--~~----------------~~~~ 66 (121)
...+||+++|++ |||||||+++|++.. ...+...+.+|. +... .. +.-.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~---~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPS---ADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCS---TTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhcc---CCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 457999999999 999999999998610 012223333433 2211 00 1112
Q ss_pred CeEEEEEE-----------------------CCCCcchHHHHHHHhh---------------------ccCEEEEEEeCC
Q 033349 67 NSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVIDAA 102 (121)
Q Consensus 67 ~~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v~d~~ 102 (121)
...+.+|| ++|++++...+..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 36799999 4455555545555555 799999999999
Q ss_pred Cc--ccHHHHHHHHHhhcc
Q 033349 103 CP--SRFEDSKTALGKKGS 119 (121)
Q Consensus 103 ~~--~s~~~~~~~l~~i~~ 119 (121)
++ ++|+.+..|+..+..
T Consensus 174 ~~~~~s~~~~~~~l~~i~~ 192 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYN 192 (255)
T ss_dssp C----CHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHH
Confidence 98 999999999987753
No 130
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.60 E-value=5.6e-15 Score=101.42 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc-cCCCceEEEEEEECCeEEEEEECCCCcchH------HHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYY 89 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~ 89 (121)
.++|+++|++|+|||||++++++.. .+...+ ..|.......+.. +..+.+||+||+..+. .+...++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-----~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-----QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-----CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-----CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 5799999999999999999998721 111111 1233333233333 6779999999987664 4556666
Q ss_pred h--ccCEEEEEEeCCCcccHH
Q 033349 90 E--EAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 90 ~--~~~~ii~v~d~~~~~s~~ 108 (121)
. .+|++++|+|+++.++..
T Consensus 77 ~~~~~d~vi~V~D~t~~e~~~ 97 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLERNL 97 (272)
T ss_dssp HTTCCSEEEEEEEGGGHHHHH
T ss_pred hcCCCCEEEEEecCCchHhHH
Confidence 5 699999999999865543
No 131
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.60 E-value=4.3e-15 Score=101.95 Aligned_cols=95 Identities=23% Similarity=0.262 Sum_probs=67.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchH----------H
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR----------S 83 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~ 83 (121)
+.++|+++|.+|+|||||++++++ ..+.....+ |.......+...+..+.+||+||+..+. .
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHH
Confidence 468999999999999999999987 222112222 3444455666777889999999976543 2
Q ss_pred HHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 84 IWEKYY--EEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 84 ~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
....++ +.+|++++|+|.++.++......++.+
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~ 110 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNLERNLYLTLQLLE 110 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh
Confidence 333443 689999999999987666555555443
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=2e-14 Score=104.34 Aligned_cols=94 Identities=26% Similarity=0.236 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc---------hHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKYY 89 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~ 89 (121)
+|+++|.+|||||||++++++..... ..+....|.......+.+.+..+.+|||||.+. +......++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~---v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI---VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce---ecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 79999999999999999998721110 111222233344567778888999999999653 455677788
Q ss_pred hccCEEEEEEeCCCcccHHH--HHHHHH
Q 033349 90 EEAHAVVFVIDAACPSRFED--SKTALG 115 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~--~~~~l~ 115 (121)
+.+|++++|+|++++.+..+ +..|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999988655443 345554
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.57 E-value=1.4e-14 Score=95.73 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE-ECCeEEEEEECCCC----------cchH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLR 82 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~d~~g~----------~~~~ 82 (121)
.....+|+++|.+|+|||||++++++... . .........|.......+. ..+..+.+|||||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR-L-AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSS-S-SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCc-c-eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34578999999999999999999987210 0 0111111223333333333 23478999999994 4456
Q ss_pred HHHHHHhhc---cCEEEEEEeCCCccc
Q 033349 83 SIWEKYYEE---AHAVVFVIDAACPSR 106 (121)
Q Consensus 83 ~~~~~~~~~---~~~ii~v~d~~~~~s 106 (121)
..+..+++. +|++++|+|.+++.+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 666777776 778999999988644
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.57 E-value=6.1e-15 Score=108.11 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=57.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHH--------H
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------K 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------~ 87 (121)
..++|+++|.+|+|||||++++++. +. ....+....|.......+.+++..+.+|||||...+...+. .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~--~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ--ER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 5689999999999999999999872 10 00111112233444466778899999999999876554332 2
Q ss_pred HhhccCEEEEEEeCCCcccHH---HHHHHHHhh
Q 033349 88 YYEEAHAVVFVIDAACPSRFE---DSKTALGKK 117 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~---~~~~~l~~i 117 (121)
+++.+|++++|+|++++.+++ ....|+..+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l 341 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH 341 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc
Confidence 467899999999999998875 444555543
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.57 E-value=1.4e-14 Score=99.02 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=62.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchHH------HHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~ 87 (121)
..++|+++|++|+|||||++++++ ..+.....+ |.......+.+.+..+.+||+||+..+.. ....
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHH
Confidence 357999999999999999999987 222222233 33344456777888899999999775543 5555
Q ss_pred Hh--hccCEEEEEEeCCCcc
Q 033349 88 YY--EEAHAVVFVIDAACPS 105 (121)
Q Consensus 88 ~~--~~~~~ii~v~d~~~~~ 105 (121)
++ ..+|++++|+|.++.+
T Consensus 76 ~~~~~~~d~vi~v~D~~~~~ 95 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCLM 95 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGHH
T ss_pred hhhccCCcEEEEEecCCcch
Confidence 65 6899999999998853
No 136
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.55 E-value=7.6e-14 Score=100.30 Aligned_cols=67 Identities=19% Similarity=0.450 Sum_probs=60.9
Q ss_pred CCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHhhccC
Q 033349 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKKGSS 120 (121)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~l~~i~~~ 120 (121)
+|+|+....+.++++.+++||++|++.++..|..++++++++++|||+++ .++|+++..|+..++++
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 36677777788888999999999999999999999999999999999999 89999999999998765
No 137
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=3e-13 Score=92.42 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=57.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH-------HHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKY 88 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~ 88 (121)
..++|+++|.+|+|||||++++++. .. .........|.......+...+..+.+|||||...+. ..+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~--~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE--RV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS--CC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC--Cc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 5799999999999999999999871 11 0011112223333344566677899999999986542 122222
Q ss_pred --hhccCEEEEEEeCCCc
Q 033349 89 --YEEAHAVVFVIDAACP 104 (121)
Q Consensus 89 --~~~~~~ii~v~d~~~~ 104 (121)
.+.+|++++|+|++..
T Consensus 115 ~~~~~~d~il~v~~~d~~ 132 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY 132 (270)
T ss_dssp TTTCEECEEEEEEESSCC
T ss_pred hhcCCCCEEEEEEeCCCC
Confidence 2379999999998653
No 138
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.55 E-value=7.4e-15 Score=106.58 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=68.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC---------------------------CCcccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---------------------------PDRIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~---------------------------~~~~~~t~~~~~~~~~~~ 66 (121)
.+..++|+++|+.++|||||+++++.......... ..+...|+......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35679999999999999999999986311110000 001224555555566667
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHH
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT 112 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~ 112 (121)
+..+.+||+||++++.......++.+|++++|+|+++ .+|+....
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~ 127 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS 127 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc
Confidence 7899999999999999888888999999999999998 67775443
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=1.3e-14 Score=102.42 Aligned_cols=97 Identities=26% Similarity=0.333 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcc-------hHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~ 89 (121)
.+|+++|.+++|||||+++++...... .+....|..++...+.+++ ..+.+||+||..+ +...+...+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i----~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI----ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE----SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc----ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence 368899999999999999998732111 1222355666666677776 7899999999432 223333445
Q ss_pred hccCEEEEEEeCCC---cccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAAC---PSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~~---~~s~~~~~~~l~~i~ 118 (121)
+.++++++|+|+++ +++++++..|+.++.
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~ 266 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELS 266 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHH
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHH
Confidence 66999999999998 788998888877764
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-14 Score=105.18 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=68.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--Cc-ccCCCceEEEEEEECCeEEEEEECCCC----------cchH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DR-IVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLR 82 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~ 82 (121)
..++|+++|.+|+|||||++++++ ..+. .. ...|.......+.+++..+.+|||||+ +.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~------~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~ 247 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG------EERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS 247 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT------STTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC------CCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHH
Confidence 458999999999999999999997 2221 11 112333334567778888999999997 5555
Q ss_pred HHHH-HHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 83 SIWE-KYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 83 ~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
.... .+++.+|++++|+|++++.++++. .|+..+
T Consensus 248 ~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~ 282 (436)
T 2hjg_A 248 VLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYA 282 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHH
Confidence 4443 477899999999999999888776 466554
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.52 E-value=2.3e-14 Score=105.23 Aligned_cols=92 Identities=25% Similarity=0.264 Sum_probs=68.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc-chH--------HHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE 86 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-~~~--------~~~~ 86 (121)
..++|+++|.+|+|||||++++++..... ..+....|..+....+.+++..+.+|||||.. +.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~---vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI---VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC---CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc---cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence 35899999999999999999998831111 11122234445556778889999999999987 432 2345
Q ss_pred HHhhccCEEEEEEeCCCcccHHHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
.+++.+|++++|+|++++.++++.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~ 342 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDR 342 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHH
T ss_pred HHhhcccEEEEEecCCCCCCHHHH
Confidence 677999999999999999887664
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=2.2e-14 Score=104.05 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=58.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc----eEEEEEEECCeEEEEEECCCCc--------chHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG----LNIGRIEVSNSKLVFWDLGGQP--------GLRSI 84 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~--------~~~~~ 84 (121)
..+|+++|.+|+|||||++++++. ... .+.++.| .....+.+.+..+.+|||+|++ .+...
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~------~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~ 75 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE------RIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQ 75 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE------ECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC------Cce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHH
Confidence 368999999999999999999872 111 1223333 3344555567889999999985 56677
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHH
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFED 109 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~ 109 (121)
...+++.+|++++|+|+.++.++.+
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d 100 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAAD 100 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHH
Confidence 7888899999999999998776554
No 143
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=3.9e-13 Score=97.52 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--------------CCCC---------------cccCCCceEEEEEE
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPPD---------------RIVPTVGLNIGRIE 64 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~--------------~~~~---------------~~~~t~~~~~~~~~ 64 (121)
.+..++|+++|..++|||||+++|+........ .... +...|+......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 456799999999999999999999863211100 0000 01123333344555
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
..+..+.+||+||++++.......+..+|++++|+|+++...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~ 142 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ 142 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc
Confidence 567889999999999998888888899999999999988643
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.51 E-value=5e-13 Score=96.10 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=68.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc----------eE---------EEEEEECCeEEEEEE
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG----------LN---------IGRIEVSNSKLVFWD 74 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~----------~~---------~~~~~~~~~~~~i~d 74 (121)
.+..++|+++|++++|||||++++++..... .......+.+ .. ..........+.+||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSK---KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCS---SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccc---ccCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 4568999999999999999999998621000 0000000000 00 000001115799999
Q ss_pred CCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
+||++.+.......+..+|++++|+|+++..++.+...|+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~ 123 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA 123 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHH
Confidence 999999999888999999999999999998766666666543
No 145
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=1.1e-13 Score=98.37 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCCCcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG 80 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~ 80 (121)
++++++|.+|+|||||++++++.... ..+....|++++...+.+++ ..+.+||+||..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~----v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE----AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc----ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 68999999999999999999982211 11122235555544555554 4799999999875
Q ss_pred hH-------HHHHHHhhccCEEEEEEeCCC
Q 033349 81 LR-------SIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 81 ~~-------~~~~~~~~~~~~ii~v~d~~~ 103 (121)
.. ..+..+++.+|++++|+|+++
T Consensus 79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 79 GASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 43 223456789999999999986
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.50 E-value=1.6e-13 Score=100.79 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=67.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-------------------------CCC--CcccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-------------------------~~~--~~~~~t~~~~~~~~~~~ 66 (121)
.+..++|+++|.+++|||||+++|+........ ... .....|+......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 457899999999999999999999763111000 000 01122444445556667
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
+..+.+||+||++++.......++.+|++++|+|+++.++
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~ 149 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF 149 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC---
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc
Confidence 7899999999999999999999999999999999998643
No 147
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=4.5e-13 Score=96.32 Aligned_cols=101 Identities=19% Similarity=0.087 Sum_probs=71.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC-----------cccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
.+..++|+++|++++|||||+++++....+.. ..+.. ....|+......+...+..+.+||+||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 45789999999999999999999987321110 01110 112344444444555668899999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~ 115 (121)
+.......+..+|++++|+|+++....+ ..+|+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~ 121 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHIL 121 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHH
Confidence 9888888889999999999998875433 334443
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.49 E-value=3.2e-13 Score=98.12 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=67.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-------------------------CCCCc--ccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPDR--IVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-------------------------~~~~~--~~~t~~~~~~~~~~~ 66 (121)
.+..++|+++|.+++|||||+++|+........ ....+ ...|+......+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 356799999999999999999999652111100 00011 123444445566667
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+..+.+|||||++++.......++.+|++++|+|+++.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 78999999999999988888888999999999999875
No 149
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.49 E-value=2.6e-13 Score=103.38 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=73.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------cccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
....+|+++|+.++|||||+++++....... + ...+ ....|+......+.+.+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4578999999999999999999985221110 0 0011 334566666667778889999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
+.......++.+|++++|+|.++..+++....|.
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~ 123 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH
Confidence 9999999999999999999999988877766554
No 150
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.49 E-value=3.2e-13 Score=96.07 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=60.8
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC---------cchHHHHH
Q 033349 17 EFH-VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ---------PGLRSIWE 86 (121)
Q Consensus 17 ~~~-i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~ 86 (121)
.++ ++++|++|+|||||++++++.. ....+...+|.++....+.+++..+.+|||+|. +.+...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~----~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~ 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT----QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC----ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH
Confidence 466 9999999999999999998721 111233456666666778888889999999995 22333333
Q ss_pred HHhhccCEEEEEEeCCCcc--cHHHH
Q 033349 87 KYYEEAHAVVFVIDAACPS--RFEDS 110 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~--s~~~~ 110 (121)
.+..+|++++|+|++++. ..+..
T Consensus 254 -~~~~aD~il~VvD~s~~~~~~~~~~ 278 (364)
T 2qtf_A 254 -EAKYSDALILVIDSTFSENLLIETL 278 (364)
T ss_dssp -GGGGSSEEEEEEETTSCHHHHHHHH
T ss_pred -HHHhCCEEEEEEECCCCcchHHHHH
Confidence 468899999999999876 44444
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.48 E-value=1.6e-13 Score=101.72 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=73.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCC------------CCCCCC------cccCCCceEEEEEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------------EGLPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~------------~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
...+|+++|.+++|||||+++++.....+ .....+ ....|+......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46789999999999999999996311100 000000 122345555567778889999999999
Q ss_pred CcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
+..+......+++.+|++++|+|+++..+.+....|
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~ 127 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM 127 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999999998777766554
No 152
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=4e-13 Score=95.21 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=71.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcch---------HHHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIW 85 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~ 85 (121)
...++++++|++|+|||||++++.+.... .......|.+.....+...+..+.+|||||.... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE----IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE----EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 35689999999999999999999872110 0112234566666666667888999999996432 1222
Q ss_pred HHHhhccCEEEEEEeCCCcc--cHHHHHHHHHhhc
Q 033349 86 EKYYEEAHAVVFVIDAACPS--RFEDSKTALGKKG 118 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~--s~~~~~~~l~~i~ 118 (121)
......+|++++|+|++++. +++....|+..+.
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 23345699999999999887 7888888887764
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.47 E-value=2.6e-13 Score=97.38 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=66.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCC-----------cccCCCceEEEEEEECCeEEEEEECCCCcchH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~~~-----------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 82 (121)
++.++|+++|+.++|||||+++++....... ..+.. +...|+......+...+..+.+||+||++++.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 3578999999999999999999987321110 01110 11123333333344456889999999999988
Q ss_pred HHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 83 SIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
......++.+|++++|+|+++....+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~q 106 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQ 106 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHH
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHH
Confidence 87788889999999999999864433
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=2.7e-13 Score=97.58 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=64.7
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEE---------------C--------C
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------N 67 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~ 67 (121)
.++..++|+++|+.++|||||++++++... ..+..+..+ |+...+....+ + .
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~ 80 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWT---DRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFL 80 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCC---CC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCcc---ccCcccccCCcEEEecccccccccccccccccccccccccCcccccc
Confidence 346789999999999999999999985211 122223333 66544332222 1 1
Q ss_pred eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC----cccHHHHHH
Q 033349 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----PSRFEDSKT 112 (121)
Q Consensus 68 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~ 112 (121)
..+.+||+||++.+.......+..+|++++|+|+++ +++++.+..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 129 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA 129 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH
Confidence 579999999999887766666678899999999985 345555543
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.47 E-value=4.2e-13 Score=96.63 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=66.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEE---------------C--------Ce
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------NS 68 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~--------~~ 68 (121)
.+..++|+++|+.++|||||++++++... ..+..+..+ |+...+....+ . ..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~---~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWT---DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCC---C--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCcc---ccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 45679999999999999999999985211 122223333 66554433322 1 15
Q ss_pred EEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc----ccHHHHH
Q 033349 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----SRFEDSK 111 (121)
Q Consensus 69 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~ 111 (121)
.+.+||+||++.+.......+..+|++++|+|+++. ++.+.+.
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 130 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM 130 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH
Confidence 799999999998887777777889999999999853 4455544
No 156
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.46 E-value=3.9e-14 Score=103.65 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=55.5
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-------CC------CcccCCCceEEEEEE
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-------PP------DRIVPTVGLNIGRIE 64 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~-------~~------~~~~~t~~~~~~~~~ 64 (121)
...+..++|+++|..++|||||+.+|+....... +. .. .+...|++.....+.
T Consensus 38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 3456789999999999999999999975221110 00 00 122345555555677
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.++..+.+||+||+++|.......+..+|++++|+|+++.
T Consensus 118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp CSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 7788999999999999988878888999999999999885
No 157
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.46 E-value=2.3e-13 Score=96.49 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCceEEEEEEEC------CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHhhc
Q 033349 55 TVGLNIGRIEVS------NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALGKKG 118 (121)
Q Consensus 55 t~~~~~~~~~~~------~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~l~~i~ 118 (121)
|.|+....+.++ ...+++||++|++.++..|..++++++++++|||++ +.++|+++..|+..+.
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~ 243 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHH
Confidence 344444445553 478999999999999999999999999999999998 7889999999999887
Q ss_pred cC
Q 033349 119 SS 120 (121)
Q Consensus 119 ~~ 120 (121)
++
T Consensus 244 ~~ 245 (354)
T 2xtz_A 244 KQ 245 (354)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=7e-14 Score=102.18 Aligned_cols=98 Identities=22% Similarity=0.192 Sum_probs=59.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHH--------
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK-------- 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~-------- 87 (121)
..++|+++|++|+|||||++++++..... ..+....|.......+.+++..+.+|||||.......+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI---VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC---CSCCTTCCHHHHHHEEEETTEEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc---ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 46899999999999999999998731111 0111112222333567788999999999997655433332
Q ss_pred HhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 88 YYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
.++.+|++++|+|.+++.+... ..|+..+
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l 328 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV 328 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc
Confidence 4678999999999999877655 3454443
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=7.9e-14 Score=101.65 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=59.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC--------CcchHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~~ 87 (121)
...+|+++|.+|+|||||++++++.... ...+....|.......+...+..+.+||||| ++.+......
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~---~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS---IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc---ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4578999999999999999999872110 0011111222222344444567899999999 7778888888
Q ss_pred HhhccCEEEEEEeCCCc
Q 033349 88 YYEEAHAVVFVIDAACP 104 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~ 104 (121)
+++.+|++++|+|..+.
T Consensus 99 ~~~~ad~il~VvD~~~~ 115 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREG 115 (456)
T ss_dssp HHHHCSEEEEEEESSSC
T ss_pred hHhhCCEEEEEEeCCCC
Confidence 99999999999998764
No 160
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.45 E-value=4.3e-13 Score=104.04 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=73.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCC------CCCC------cccCCCceEEEEEEEC---------------
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPD------RIVPTVGLNIGRIEVS--------------- 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~------~~~~------~~~~t~~~~~~~~~~~--------------- 66 (121)
.....+|+++|+.++|||||+++++........ .+.+ +...|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345789999999999999999999874221110 1111 1223555444444443
Q ss_pred -CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 67 -~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
+..+.+|||||+.++...+..+++.+|++++|+|+++..+++....|.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~ 144 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR 144 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH
Confidence 478999999999999999999999999999999999998888776554
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.44 E-value=3.4e-13 Score=99.03 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=66.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCC--cccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~-~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+.++|+++|..++|||||++++++..... ...... ....|+......+.+++..+.+||+||++.+.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57899999999999999999998721000 000111 122355555556777888999999999999988888888999
Q ss_pred CEEEEEEeCCC---cccHHHH
Q 033349 93 HAVVFVIDAAC---PSRFEDS 110 (121)
Q Consensus 93 ~~ii~v~d~~~---~~s~~~~ 110 (121)
|++++|+|+++ +++.+.+
T Consensus 98 D~~ilVvda~~g~~~qt~e~l 118 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHM 118 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHH
T ss_pred CEEEEEEecCCCccHHHHHHH
Confidence 99999999988 4455444
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.5e-13 Score=100.85 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCC----------------CCCC-----------cccCCCceEEEEEEECC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------------LPPD-----------RIVPTVGLNIGRIEVSN 67 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~----------------~~~~-----------~~~~t~~~~~~~~~~~~ 67 (121)
+..++|+++|.+++|||||+++|+........ .+.. ....|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 46799999999999999999999862111100 0000 01234444455666778
Q ss_pred eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 68 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
..+.+|||||++++.......++.+|++++|+|+++.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 8999999999999988888888999999999999873
No 163
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=97.13 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=53.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g 77 (121)
....+++++|.+|+|||||++++++... ........|+.++...+.+.+ ..+.+||+||
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~----~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA----SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc----cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 3568999999999999999999987211 111222345555555555543 2499999999
Q ss_pred CcchHH-------HHHHHhhccCEEEEEEeCCCcccHHH
Q 033349 78 QPGLRS-------IWEKYYEEAHAVVFVIDAACPSRFED 109 (121)
Q Consensus 78 ~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~s~~~ 109 (121)
..+... .+..+++.+|++++|+|+++.+++.+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 765433 55677899999999999987655443
No 164
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.43 E-value=1.5e-12 Score=96.62 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=65.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CC----------CCC------cccCCCceEEEEEEECCeEEEEEECC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GL----------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLG 76 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~----------~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~ 76 (121)
....+|+++|++++|||||+++++....... +. ..+ ....|+......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3578999999999999999999986311110 00 000 11122333344567778999999999
Q ss_pred CCcchHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 77 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
|+..+......+++.+|++++|+|+++...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 999988888888999999999999988644
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=4.3e-13 Score=95.62 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
+|+++|.+++|||||+++++. ...|++.....+..++..+.+|||||++++.......++.+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------------EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh------------CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 899999999999999999872 23455555556666778899999999999987777788999999999
Q ss_pred EeCCCcccHHHHHHHH
Q 033349 99 IDAACPSRFEDSKTAL 114 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l 114 (121)
+| ++ ..+.+..+++
T Consensus 91 vd-~~-g~~~qt~e~~ 104 (370)
T 2elf_A 91 IP-PQ-GLDAHTGECI 104 (370)
T ss_dssp EC-TT-CCCHHHHHHH
T ss_pred Ec-CC-CCcHHHHHHH
Confidence 99 43 3444444444
No 166
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.43 E-value=7.2e-13 Score=100.96 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=72.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------cccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
.....+|+++|.+++|||||+++++....... + ...+ +...|+......+.+++..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34678999999999999999999985321110 0 0111 12345555556677788999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
.+.......++.+|++++|+|.++..+.+....|
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~ 120 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW 120 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH
Confidence 9888888899999999999999998777766554
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.43 E-value=8.6e-13 Score=96.34 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=68.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------------CCCC-----C------cccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------------GLPP-----D------RIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~----------------~~~~-----~------~~~~t~~~~~~~~~~~ 66 (121)
.+..++|+++|.+++|||||+++|+....... +.+. + +...|+......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 34679999999999999999999986311100 0000 0 1234566555666777
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+..+.+|||||++++.......+..+|++++|+|+++.
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 78999999999999998888888999999999999875
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.43 E-value=7.2e-13 Score=96.61 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC----------CcchHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSIW 85 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 85 (121)
..++|+++|.+++|||||++++++..... .......|.......+..++..+.+||||| ++++....
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~---~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVI---VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE---ECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccc---cCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 46899999999999999999998611000 001111222223356777888999999999 67776655
Q ss_pred H-HHhhccCEEEEEEeCCCccc
Q 033349 86 E-KYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 86 ~-~~~~~~~~ii~v~d~~~~~s 106 (121)
. .+++.+|++++|+|+++..+
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~ 292 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII 292 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcC
Confidence 4 47789999999999988644
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.42 E-value=1.7e-12 Score=97.43 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCCc--cc----CCCceEEEEEEEC-----CeEEEEEECCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPDR--IV----PTVGLNIGRIEVS-----NSKLVFWDLGGQP 79 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-----~~~~~--~~----~t~~~~~~~~~~~-----~~~~~i~d~~g~~ 79 (121)
...+|+++|+.++|||||+.+++........ ...+. .+ .|+......+.+. +..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4578999999999999999999863222110 01111 11 1222222344443 2679999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
.+.......++.+|++++|+|+++..+++....|...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~ 119 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999999998887777776543
No 170
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.42 E-value=2.6e-12 Score=96.43 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=68.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCCc------ccCCCceEEEEEEEC---C--eEEEEEECCCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPDR------IVPTVGLNIGRIEVS---N--SKLVFWDLGGQ 78 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-----~~~~~------~~~t~~~~~~~~~~~---~--~~~~i~d~~g~ 78 (121)
+...+|+++|+.++|||||+++++........ ...+. ...|+......+.+. + ..+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34678999999999999999999763221100 00111 111222222333333 2 67999999999
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
..+.......++.+|++++|+|+++..+.+....|...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a 121 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH
Confidence 99998888899999999999999998888887777543
No 171
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.42 E-value=2.4e-12 Score=98.24 Aligned_cols=99 Identities=17% Similarity=0.016 Sum_probs=71.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------cccCCCceEEEEEEECC-------eEEEEE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSN-------SKLVFW 73 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~-------~~~~i~ 73 (121)
....+|+++|..++|||||+.+++....... + .+.+ +...|+......+.+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 4568999999999999999999975321110 0 0111 12234444445566665 789999
Q ss_pred ECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 74 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
||||+.++.......++.+|++++|+|+++....+....|
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 9999999988888999999999999999987665554444
No 172
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.42 E-value=1.4e-13 Score=99.60 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=63.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe-EEEEEECCCCcchH-------HHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLR-------SIW 85 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~~~-------~~~ 85 (121)
+...++|+++|+.++|||||++++++.... ........|.......+.+.+. .+.+|||||++.+. ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~---~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVS---IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCC---ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 345789999999999999999999861100 0112223355555566777764 89999999986543 234
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
..+++.+|++++|+|+...+.......++
T Consensus 108 ~~~l~~aD~vllVvD~~~~~~~~~~l~~l 136 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPTPYEDDVVNLF 136 (423)
T ss_dssp HHHHTSCSEEEEECSSSCCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEeCCChHHHHHHHHHH
Confidence 56778999999999984443333333333
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.42 E-value=6.8e-13 Score=86.82 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=59.0
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCCcc---------
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQPG--------- 80 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~~--------- 80 (121)
+...+..+++++|++|+|||||++++++ ..+...+.++.|... ..+.+.+ .+.+||+||...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g------~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~ 93 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN------QKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKR 93 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC------C-------------CCEEEEEEET-TEEEEECCCCC------CCHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC------CCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHH
Confidence 4455778999999999999999999987 332333445555432 2333334 588999999742
Q ss_pred -hHHHHHHHh---hccCEEEEEEeCCCcccHH--HHHHHHH
Q 033349 81 -LRSIWEKYY---EEAHAVVFVIDAACPSRFE--DSKTALG 115 (121)
Q Consensus 81 -~~~~~~~~~---~~~~~ii~v~d~~~~~s~~--~~~~~l~ 115 (121)
+......++ ..++++++++|++++.+.. .+..|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 333334444 4689999999999876654 2344543
No 174
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.1e-12 Score=92.13 Aligned_cols=85 Identities=24% Similarity=0.254 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc-------chHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKYYE 90 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-------~~~~~~~~~~~ 90 (121)
.+|+++|.|++|||||++++++..... .+....|..+....+.+.+.+++++|+||-. .....+...++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v----~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEA----AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCG----GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcc----cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 589999999999999999999833222 2334567778888889999999999999932 12233445568
Q ss_pred ccCEEEEEEeCCCccc
Q 033349 91 EAHAVVFVIDAACPSR 106 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s 106 (121)
.||++++|+|.++|..
T Consensus 149 ~ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH 164 (376)
T ss_dssp HCSEEEEEEETTSHHH
T ss_pred hcCccccccccCccHH
Confidence 9999999999999743
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=5.2e-12 Score=86.43 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=53.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc-------cCCCceEEEEEEE--CC--eEEEEEECCCC------
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-------VPTVGLNIGRIEV--SN--SKLVFWDLGGQ------ 78 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~-------~~t~~~~~~~~~~--~~--~~~~i~d~~g~------ 78 (121)
-.++|+++|.+|+|||||++++... ..+...+ .+|++.......+ ++ ..+.+|||||.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~-----~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLT-----DLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSS-----CC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCC-----CccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 4799999999999999999997651 2222222 5777766554444 33 48999999996
Q ss_pred -cchHHHH-------HHHhhc-------------cCEEEEEEeCCCc
Q 033349 79 -PGLRSIW-------EKYYEE-------------AHAVVFVIDAACP 104 (121)
Q Consensus 79 -~~~~~~~-------~~~~~~-------------~~~ii~v~d~~~~ 104 (121)
+.+..+. ..++.. +|+++++++.+..
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~ 128 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 128 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC
Confidence 2344443 455554 7789999977653
No 176
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=1e-12 Score=94.50 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE-----------------EEECC---eEEEEEECCC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----------------IEVSN---SKLVFWDLGG 77 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----------------~~~~~---~~~~i~d~~g 77 (121)
++|+++|.+|+|||||++++++..............++.|..... ..+++ .++.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999998732111000001112333321111 01222 5799999999
Q ss_pred Ccc----hHHHHH---HHhhccCEEEEEEeCCCc
Q 033349 78 QPG----LRSIWE---KYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 78 ~~~----~~~~~~---~~~~~~~~ii~v~d~~~~ 104 (121)
..+ ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222223 235889999999999886
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.39 E-value=9e-12 Score=85.68 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=34.8
Q ss_pred eEEEEEECCCCc-------------chHHHHHHHhhccCEEE-EEEeCCCcccHHHHHHHHHh
Q 033349 68 SKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 68 ~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~s~~~~~~~l~~ 116 (121)
..+.+|||||.. .+......+++.++.++ +|+|.++..+..+...++..
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~ 187 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHH
Confidence 679999999953 45567778888888777 68999876554443344443
No 178
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=4.1e-12 Score=92.23 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHH------------
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------------ 84 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------ 84 (121)
.++++++|++|+|||||++++++..... ..+....|.......+.+++..+.+|||+|..+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~---v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERAL---VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEE---ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccc---cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4899999999999999999998721100 0111112222334567788889999999997533221
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHH
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFED 109 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~ 109 (121)
....++.+|++++|+|+++..+.++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 1345688999999999998766654
No 179
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.37 E-value=8.9e-13 Score=91.55 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=56.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc-chHHHH--------H
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLRSIW--------E 86 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-~~~~~~--------~ 86 (121)
+..+++++|++|+|||||++++++..-.. .......|.......+..++.++.+|||||.. ...... .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE---CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc---cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45579999999999999999998721110 01111123222233455667899999999987 332222 2
Q ss_pred HHhhccCEEEEEEeCCC
Q 033349 87 KYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~ 103 (121)
..++.+|++++|+|.++
T Consensus 84 ~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR 100 (301)
T ss_dssp SCCCCEEEEEEEEETTC
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 33568999999999876
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=7.2e-12 Score=93.32 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=65.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-----------------------------------
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----------------------------------- 60 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~----------------------------------- 60 (121)
...+|+|+|.+|+|||||++++++.. ..+........|.....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~--~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE--VPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC--CSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc--cccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45799999999999999999999821 10000111111111000
Q ss_pred --EEEEECC---eEEEEEECCCCcc-----------hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 61 --GRIEVSN---SKLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 61 --~~~~~~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
..+.+.+ ..+.+|||||... +......++..+|++++|+|+++....+....|+..+.
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~ 215 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR 215 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH
Confidence 0011111 3589999999764 55677788899999999999988766666667766553
No 181
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.35 E-value=1.6e-14 Score=107.17 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=64.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEE-CCeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+..+|+++|++++|||||+++|.+.. +.....+++... ...+.. .+..+.+|||||++.+.......++.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~a 76 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVT 76 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccC
Confidence 46789999999999999999998621 111112222211 222333 346799999999999988888888999
Q ss_pred CEEEEEEeCCCcccHHHHH
Q 033349 93 HAVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~ 111 (121)
|++++|+|+++....+...
T Consensus 77 D~vILVVDa~dg~~~qt~e 95 (537)
T 3izy_P 77 DIVILVVAADDGVMKQTVE 95 (537)
T ss_dssp SSCEEECBSSSCCCHHHHH
T ss_pred CEEEEEEECCCCccHHHHH
Confidence 9999999999865554443
No 182
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.35 E-value=4.6e-13 Score=100.46 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=65.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE----------------ECCeEEEEEECCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP 79 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~d~~g~~ 79 (121)
+..+|+++|++++|||||++++++..-.. .. .....++++....... +....+.+|||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~-~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS-RE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC-C-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc-cc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46789999999999999999998732110 00 0122234554332211 111259999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCC---cccHHHHHH
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKT 112 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~ 112 (121)
.+.......++.+|++++|+|+++ +++++.+..
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 988777777888999999999999 667666543
No 183
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.34 E-value=5.5e-12 Score=89.84 Aligned_cols=82 Identities=23% Similarity=0.333 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE---------------------CCeEEEEEECC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------------------SNSKLVFWDLG 76 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~i~d~~ 76 (121)
++++++|.+|+|||||++++++..............|+++. +.+ .+..+.+||+|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~----~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV----VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE----EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee----EecChHHHHHHHHHhcccccccccCCceEEEEECC
Confidence 68999999999999999999874211111111123344443 332 23579999999
Q ss_pred CCcc-------hHHHHHHHhhccCEEEEEEeCCC
Q 033349 77 GQPG-------LRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 77 g~~~-------~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
|..+ +...+...++.+|++++|+|+++
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 9654 33444556799999999999986
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.31 E-value=7.3e-11 Score=89.65 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=69.6
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--C-----CCCCc-------ccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G-----LPPDR-------IVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~-----~~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
.....+++++|+.|+|||||+++++....... + ..... ...|+......+...+..+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 34578899999999999999999985322110 1 00001 1224444455666677899999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
++.......++.+|++++|+|.++....+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q 114 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG 114 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh
Confidence 99988899999999999999988765443
No 185
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.29 E-value=2.3e-13 Score=100.26 Aligned_cols=93 Identities=26% Similarity=0.287 Sum_probs=64.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.+..+|+++|+.++|||||++++....-.. +. ....|.......+..++..+.+|||||++.+...+...+..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~-~e---~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVAS-GE---AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSB-TT---BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCcc-cc---CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 356789999999999999999998621110 10 00111111122334456789999999999988877777889999
Q ss_pred EEEEEeCCC---cccHHHHH
Q 033349 95 VVFVIDAAC---PSRFEDSK 111 (121)
Q Consensus 95 ii~v~d~~~---~~s~~~~~ 111 (121)
+++|+|+++ +++.+.+.
T Consensus 78 aILVVda~~g~~~qT~e~l~ 97 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAIQ 97 (501)
T ss_dssp EEEEEETTTBSCTTTHHHHH
T ss_pred EEEEeecccCccHHHHHHHH
Confidence 999999987 45555543
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.29 E-value=9.5e-12 Score=98.67 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=62.6
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCCC-----C--cccCCCceE----EEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPP-----D--RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~~-----~--~~~~t~~~~----~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.+..++|+++|+.++|||||+++++....... ..+. + ..+.+.|.. ...+...+..+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 45679999999999999999999987311100 0000 0 111233322 2234445688999999999999
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
.......+..+|++++|+|+++..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv 396 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP 396 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC
Confidence 888788889999999999998864
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.28 E-value=3.8e-11 Score=91.56 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=38.2
Q ss_pred EEEEEECCCCcc---hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 69 KLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 69 ~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
.+.+|||||... .......+++.+|++++|+|.+++.+..+...|...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 589999999553 345667788999999999999998888777666533
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=7.7e-11 Score=83.46 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=31.2
Q ss_pred eEEEEEECCCCcch-------------HHHHHHHhhccCEEEEEEeCCCcc
Q 033349 68 SKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 68 ~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
..+.+|||||...+ ......+++++|++++|+|.++..
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~ 186 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD 186 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence 56899999997654 667788899999999999876543
No 189
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.26 E-value=3.8e-11 Score=83.19 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.1
Q ss_pred eEEEEEECCCCcc-------------hHHHHHHHhhccCEEEEEEeCCC
Q 033349 68 SKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 68 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
.++.+|||||... +......+++.+|++++|+|.++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 6799999999643 55677788899999999999744
No 190
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=7.8e-12 Score=88.82 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=52.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCc--------ccCCCceEEEEEE--ECC--eEEEEEECCCC----
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--------IVPTVGLNIGRIE--VSN--SKLVFWDLGGQ---- 78 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~--------~~~t~~~~~~~~~--~~~--~~~~i~d~~g~---- 78 (121)
...++|+++|++|+|||||++++... ..+... ..+|++....... ..+ ..+.+|||||.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~-----~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~ 109 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT-----DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 109 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC-----CC---------------CEEEEEEEEC----CEEEEEEEEC--------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC-----CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccC
Confidence 35799999999999999999997651 111111 1245555433332 234 47999999998
Q ss_pred ---cchHHHHH-------HHhhccCEE-----------EEEEeCCC-cccHHHHH-HHHHh
Q 033349 79 ---PGLRSIWE-------KYYEEAHAV-----------VFVIDAAC-PSRFEDSK-TALGK 116 (121)
Q Consensus 79 ---~~~~~~~~-------~~~~~~~~i-----------i~v~d~~~-~~s~~~~~-~~l~~ 116 (121)
+.+..+.. .+++.++++ +++|++++ ..++..+. .|+..
T Consensus 110 ~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~ 170 (361)
T 2qag_A 110 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA 170 (361)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH
Confidence 44444443 666665544 36666655 55666655 34443
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.21 E-value=1.1e-12 Score=98.43 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=45.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-------------------------CCC--cccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------------------------PPD--RIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~-------------------------~~~--~~~~t~~~~~~~~~~~ 66 (121)
.+..++|+++|.+++|||||+++|+......... ... ....|+......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996522111000 000 1112333334445555
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
+..+.+|||||++.+.......+..+|++++|+|+++
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 6789999999999887665666788999999999875
No 192
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=2.6e-10 Score=81.83 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=59.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g 77 (121)
....+++++|++|+|||||++++++... .........|+.++...+.+.+ ..+.+||+||
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~---a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL---GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT---TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc---ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 3568999999999999999999998211 0111122234455555555654 3689999998
Q ss_pred C-------cchHHHHHHHhhccCEEEEEEeCCC
Q 033349 78 Q-------PGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 78 ~-------~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
. +.+...+...++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 3344456667789999999999875
No 193
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.15 E-value=6e-11 Score=84.36 Aligned_cols=67 Identities=21% Similarity=0.434 Sum_probs=54.6
Q ss_pred CCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHhhccC
Q 033349 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALGKKGSS 120 (121)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~l~~i~~~ 120 (121)
+|+|+....+.+++..+.+||++|++.++..|..+++++++++||||+++ .++++++..|+..++++
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 56788877888889999999999999999999999999999999999999 78999999999998765
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.15 E-value=2.9e-10 Score=82.17 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcc-------hHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~ 89 (121)
-.++++|++|+|||||+++++...... .+....|..++...+..++ ..+.+||+||..+ +...+...+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i----~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI----APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE----CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc----cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 357899999999999999998732211 1122234455555666665 7899999999632 222223345
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+.++.++.++|++ +..+.++..|..++
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el 260 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEV 260 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHH
Confidence 6799999999998 66677776665554
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.08 E-value=1e-09 Score=81.73 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCC-------C-----CCC------CcccCCCceEEEEEEECCeEEEEEECCCC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE-------G-----LPP------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-------~-----~~~------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 78 (121)
.-+|+|+|..++|||||+.+++...+.+. + ... .+..-|+......+.+++..++++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 46799999999999999999964321100 0 011 12223444456678889999999999999
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
..+.......++-+|++++|+|..+.-.-+...-|
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~ 145 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM 145 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence 99999889999999999999999886544444333
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.07 E-value=1.2e-09 Score=77.18 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.8
Q ss_pred hhhHHHHHhhhcc------CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 2 FSLFYGLWKYIFT------KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 2 ~~~~~~~~~~~~~------~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++.++.+.++. ....+|+|+|.+++|||||++++++
T Consensus 10 ~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 10 IPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp HHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhC
Confidence 3445566555442 2457999999999999999999987
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.89 E-value=2.3e-09 Score=81.12 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCC--C------CCC------cccCCCceEEEEEEECCeEEEEEECCCCcchHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--L------PPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~--~------~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 83 (121)
-+|+|+|..++|||||+.+++...+.+.. . ..+ +..-|+......+.+++..++++|||||..+..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 35899999999999999999764332211 1 011 011244444456777888999999999999999
Q ss_pred HHHHHhhccCEEEEEEeCCCc
Q 033349 84 IWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.....++-+|++++|+|..+.
T Consensus 83 Ev~raL~~~DgavlVVDa~~G 103 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDG 103 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCT
T ss_pred HHHHHHHHhCEEEEEEeCCCC
Confidence 999999999999999999874
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.88 E-value=2.3e-09 Score=74.35 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++|+++|++|+|||||++++.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999875
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=5.7e-09 Score=75.47 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=34.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC--CCCcccCCCceEEEEE--EECC--eEEEEEECCCCcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--PPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPG 80 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~--~~~~--~~~~i~d~~g~~~ 80 (121)
-.++|+++|++|+|||||++.+++......+. ......+|.+.....+ ...+ ..+.+||++|...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 46889999999999999999998722110010 0001123443322221 1122 4689999999754
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.79 E-value=7.8e-08 Score=73.60 Aligned_cols=91 Identities=19% Similarity=0.051 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhcc------CCC-C-CCCC------cccCCCceEEEEEEEC-------CeEEEEEEC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYS------NVE-G-LPPD------RIVPTVGLNIGRIEVS-------NSKLVFWDL 75 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~------~~~-~-~~~~------~~~~t~~~~~~~~~~~-------~~~~~i~d~ 75 (121)
.-+|+|+|+.++|||||+.+++...+ +.. + .+.+ +..-|+-.....+.+. +..++++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 45699999999999999999865321 110 0 0111 1112333333344443 467999999
Q ss_pred CCCcchHHHHHHHhhccCEEEEEEeCCCcccH
Q 033349 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107 (121)
Q Consensus 76 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 107 (121)
|||..+.......++-+|++++|+|+.+--..
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~ 124 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP 124 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCch
Confidence 99999999999999999999999999875443
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.73 E-value=5.7e-08 Score=68.65 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=25.0
Q ss_pred CCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 66 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
.+..+.++||+|-.... ......+|.+++|+|.+++...+
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~ 204 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQ 204 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHH
Confidence 45678999999953221 33457899999999988654433
No 202
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.67 E-value=9.6e-10 Score=76.26 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=61.6
Q ss_pred HHHHHHHhhccCCCCCCC-CcccCCCceEEEEEEEC-CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcc-cHH
Q 033349 32 TLLEKLKSVYSNVEGLPP-DRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFE 108 (121)
Q Consensus 32 sl~~~~~~~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~ 108 (121)
+|+.+++. +.|. ..+.||+|.... .... +..+.+||+ ++++..+++.+++++|++++|||+++++ +++
T Consensus 32 sl~~~~~~------~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~ 102 (301)
T 1u0l_A 32 ERILCKLR------GKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTY 102 (301)
T ss_dssp CEEEEEEC------GGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHH
T ss_pred cEEEEEEc------ccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHH
Confidence 46666665 6776 788899996554 3332 247999999 8888888899999999999999999997 799
Q ss_pred HHHHHHHhh
Q 033349 109 DSKTALGKK 117 (121)
Q Consensus 109 ~~~~~l~~i 117 (121)
.+..|+..+
T Consensus 103 ~l~~~l~~~ 111 (301)
T 1u0l_A 103 IIDKFLVLA 111 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899998765
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.67 E-value=2.7e-08 Score=70.37 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=28.1
Q ss_pred CCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccH
Q 033349 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107 (121)
Q Consensus 66 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 107 (121)
.+..+.+|||||.... ....+..+|++++|+|....+.+
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~ 208 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL 208 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH
Confidence 4578999999995432 22345889999999998665444
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.54 E-value=9.3e-08 Score=67.31 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=25.8
Q ss_pred CCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 66 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
.+.++.++||||....... ....+|++++|+|.++.+
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~ 183 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGD 183 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC----
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccH
Confidence 4578999999996543322 358999999999987543
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.53 E-value=1.2e-06 Score=67.51 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-+|+|+|.+++|||||++++++
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999987
No 206
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=4.3e-08 Score=66.80 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCCc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~ 79 (121)
++++++|.+|+|||||++++.+. ... .+.++.|... ..+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~------~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK------RAS-SVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------CC-----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc------ccc-ccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 69999999999999999999872 111 1122222221 12222 3468999999944
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.48 E-value=2.3e-07 Score=63.86 Aligned_cols=58 Identities=28% Similarity=0.361 Sum_probs=34.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 78 (121)
...++++++|.+|+|||||++++.+..... .......|.... .+.. +..+.++||||-
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~---~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK---TGDRPGITTSQQ--WVKV-GKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------C--CEEE-TTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee---cCCCCCeeeeeE--EEEe-CCCEEEEECcCc
Confidence 467899999999999999999998721110 001111122221 2222 346899999994
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.43 E-value=6.4e-07 Score=63.02 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.....++++|++|+|||||++.+.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.32 E-value=6.8e-06 Score=60.75 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....|+++|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 210
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.30 E-value=4e-06 Score=56.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+..-+++.|.+|+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 457788999999999999999974
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.25 E-value=2.2e-06 Score=64.46 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=39.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE---ECCeEEEEEECCCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGGQ 78 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~i~d~~g~ 78 (121)
....+|+|+|.+|+|||||++++.+..... .........|.|....... ..+..+.++||||-
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 467889999999999999999998732111 1111112334443321111 13478999999994
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.24 E-value=1.6e-06 Score=61.66 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=45.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CcccCCCceEEEEEEECCeEEEEEECCCCcc-------hH-HHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LR-SIWE 86 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~-~~~~ 86 (121)
..+++++|.+|+|||||++++.+.......... .....|.. ...+.+. ..+.++||||-.. .. ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 458999999999999999999874111000000 01112222 2223333 2379999999321 11 1222
Q ss_pred HHh--hccCEEEEEEeC
Q 033349 87 KYY--EEAHAVVFVIDA 101 (121)
Q Consensus 87 ~~~--~~~~~ii~v~d~ 101 (121)
..+ +..+.++++++.
T Consensus 239 ~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHSCSSCCCCEEEEECT
T ss_pred HHhcccccCceEEEEcC
Confidence 222 567777887776
No 213
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.23 E-value=1.5e-07 Score=68.89 Aligned_cols=92 Identities=23% Similarity=0.310 Sum_probs=53.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEE--EE-CC-eEEEEEECCCCc--chHHHH--
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV-SN-SKLVFWDLGGQP--GLRSIW-- 85 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~-~~~~i~d~~g~~--~~~~~~-- 85 (121)
......|+++|.+|+||||+.+++...... ...++.+++...+ .. .+ ....+||..|++ +.+..+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~-------~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~ 108 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNF-------IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCAL 108 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhc-------cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHH
Confidence 345788999999999999999999762211 1112222211000 00 01 334678988873 233332
Q ss_pred ------HHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 86 ------EKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 86 ------~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
..++...++.++|+|.++. +.+.-..|
T Consensus 109 ~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~ 141 (469)
T 1bif_A 109 AALNDVRKFLSEEGGHVAVFDATNT-TRERRAMI 141 (469)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHH
Confidence 4555567888999999987 44444444
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.17 E-value=7.7e-07 Score=58.92 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=59.4
Q ss_pred HHHHHhhhccCceeEEEEEcCC-CCCHHHHHHHHHhhccCC---CCCCCCcccCCCceEEEEEEECC-------------
Q 033349 5 FYGLWKYIFTKTEFHVLILGID-KAGKTTLLEKLKSVYSNV---EGLPPDRIVPTVGLNIGRIEVSN------------- 67 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~-~~GKTsl~~~~~~~~~~~---~~~~~~~~~~t~~~~~~~~~~~~------------- 67 (121)
++|+++++.++.+-+++++||. ..=+.+|+.++.... ++ .+.+. ....-+|. -..+.+++
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~-~~~p~~g~~~-~~~~gigs-gv~~~~~~~~~fni~tlys~~ 80 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSE-ELCPTAGLPQ-RQIDGIGS-GVNFQLNNQHKFNILILYSTT 80 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCC-SSCCEECCGG-GCCTTSCC-CEEEESSSSCEEEEEECSCC-
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCC-CcccccCCCC-CCcCcccc-ceEEEECCeeEEEEEEeccCc
Confidence 4567778888899999999974 223557888877621 11 00000 00001110 01111111
Q ss_pred ---------------eEEEEEECC------CCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH---HhhccC
Q 033349 68 ---------------SKLVFWDLG------GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL---GKKGSS 120 (121)
Q Consensus 68 ---------------~~~~i~d~~------g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l---~~i~~~ 120 (121)
.++.....| ||++++..|..|++++|++|||+|.+|++.++ ++..+ ..++++
T Consensus 81 ~~er~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~e 156 (227)
T 3l82_B 81 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDP 156 (227)
T ss_dssp ------------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCT
T ss_pred HHHhhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcc
Confidence 123333333 78899999999999999999999999987765 66655 555543
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.06 E-value=9.3e-06 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++++++|++|+|||||++.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999874
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.03 E-value=2.6e-06 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.....+|+++|++|+|||||+++++.
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999999987
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.94 E-value=1.1e-05 Score=57.31 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..+++++|.+|+|||||++++.+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 468999999999999999999874
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=3.6e-05 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++++|+|++|+|||||++.+.+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999987
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.82 E-value=3.2e-06 Score=58.48 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
.+||++++..|..|++++|++|||+|.+|++.++ +++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL 232 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEF 232 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHH
Confidence 3578999999999999999999999999998765 44433
No 220
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=1.5e-05 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.79 E-value=1.5e-05 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
--++++|++|||||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 222
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.78 E-value=2.4e-05 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3579999999999999999987
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.75 E-value=1.8e-05 Score=51.40 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.++++|++|+|||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 224
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=0.00026 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+..=|.|+|++++|||+|++++.+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34566889999999999999999864
No 225
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.70 E-value=4.5e-05 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999987
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.69 E-value=2.5e-05 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999874
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=2.4e-05 Score=50.14 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhhc
Q 033349 20 VLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
++++|++|+|||||++.+.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998743
No 228
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.69 E-value=3.7e-05 Score=51.00 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 229
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.69 E-value=4e-05 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3478999999999999999987
No 230
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.67 E-value=4.4e-05 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 231
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.66 E-value=4.1e-05 Score=49.96 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.....+++++|.+|+|||||+++++..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999874
No 232
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.66 E-value=6.6e-05 Score=51.12 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999987
No 233
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.65 E-value=3.8e-05 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++...++|+|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.65 E-value=3e-05 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
--++++|++|+|||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457999999999999999998743
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.64 E-value=3.2e-05 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
.--++|+|++|+|||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468999999999999999998743
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=3e-05 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+||||+++.+.+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999987
No 237
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.64 E-value=3.4e-05 Score=49.95 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhhc
Q 033349 20 VLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
|+|+||+|+|||||++++....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7999999999999999998643
No 238
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.62 E-value=5.7e-05 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999987
No 239
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.62 E-value=3.6e-05 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
.-.++++|++|+|||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998743
No 240
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.62 E-value=5.3e-05 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 3578999999999999999987
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.61 E-value=6e-05 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.60 E-value=4e-05 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--++++|++|+||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 445899999999999999999874
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.60 E-value=4.1e-05 Score=50.02 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
+.--++++|++|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568999999999999999998743
No 244
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.59 E-value=0.00019 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...++++|++|+|||||++.+.+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 447999999999999999999883
No 245
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.59 E-value=8.7e-05 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999987
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.58 E-value=4.9e-05 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~ 38 (121)
...++++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 247
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=5.9e-05 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++|+|++|+|||||++.+.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999999987
No 248
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.57 E-value=9.2e-05 Score=52.55 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 478999999999999999987
No 249
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.56 E-value=5.7e-05 Score=49.06 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+...++++|++|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998774
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.56 E-value=8.2e-05 Score=49.11 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 251
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.55 E-value=4e-05 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 34689999999999999999987
No 252
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.55 E-value=6.1e-05 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+....|+++|++||||||+.+.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999866
No 253
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.55 E-value=9.2e-05 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 478999999999999999987
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=5.8e-05 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..|+++|++||||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 255
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.00013 Score=45.84 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..+...+.....-.+++.|++|+|||++++.+...
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444454455567899999999999999999773
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.52 E-value=7.4e-05 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 257
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.52 E-value=8.6e-05 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999987
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=6.1e-05 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-|+++|++||||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999764
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.52 E-value=6.3e-05 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
++.--++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344568999999999999999998844
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.52 E-value=6.9e-05 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.|++.|++||||||+++.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 261
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.52 E-value=9.5e-05 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3578999999999999999987
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.51 E-value=9.5e-05 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3578999999999999999987
No 263
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=9.7e-05 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999987
No 264
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.51 E-value=0.00015 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 478999999999999999987
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.50 E-value=9.2e-05 Score=46.70 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...++++|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999875
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.50 E-value=8.1e-05 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...++++|++||||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999874
No 267
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.50 E-value=5.7e-05 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCCHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEK 36 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~ 36 (121)
--++++|++|+|||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3478999999999999994
No 268
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.49 E-value=6.7e-05 Score=54.46 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|+++|++|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 269
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.49 E-value=2.6e-05 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.48 E-value=7.3e-05 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 271
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.48 E-value=7.9e-05 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
++|++.|++||||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 272
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.47 E-value=9.3e-05 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-.++++|++|+|||+|++.+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4566899999999999999998763
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=7.6e-05 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+.--++++|++|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999763
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.47 E-value=8.3e-05 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
++|+++|++||||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 275
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.47 E-value=0.00013 Score=52.15 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 478999999999999999987
No 276
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.47 E-value=7.5e-05 Score=47.87 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|++.|++||||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999866
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.47 E-value=7.1e-05 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 278
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.46 E-value=0.00014 Score=51.66 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 478999999999999999987
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.45 E-value=8.6e-05 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-|++.|++||||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999876
No 280
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00014 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 478999999999999999987
No 281
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.45 E-value=0.00014 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999987
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.45 E-value=7.8e-05 Score=46.50 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKL 37 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~ 37 (121)
.-|++.|++||||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999998
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=0.0001 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 284
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.43 E-value=0.00016 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=-++++|++|+|||||++.+.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3478999999999999999987
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.43 E-value=0.0001 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..|++.|++||||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.43 E-value=9.6e-05 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-|++.|++||||||+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999763
No 287
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.43 E-value=0.0012 Score=48.05 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-|+++|++|+||||++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 56799999999999999999875
No 288
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.43 E-value=9.7e-05 Score=47.73 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..|+|+|++||||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999865
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.43 E-value=0.0008 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-++++|++|+||||++..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999999864
No 290
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.42 E-value=0.00013 Score=47.11 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=22.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...+.|+++|++||||||+++.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999876
No 291
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.42 E-value=0.00013 Score=46.51 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.8
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+..-|+++|.+|+||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344567799999999999999999865
No 292
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.42 E-value=0.0011 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-++++|++|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44688899999999999999875
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.41 E-value=0.00011 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.|++.|.+||||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999773
No 294
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.41 E-value=0.00016 Score=45.49 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..+...+.....-.+++.|++|+|||++++.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34444444555667899999999999999999773
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=0.00014 Score=46.12 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|+++|++||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 296
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.40 E-value=0.00014 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+.|++.|++||||||+++.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.39 E-value=0.00016 Score=46.82 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+..-|+++|++|+||||+++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998763
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00011 Score=47.54 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...|+++|++||||||+++.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999763
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.39 E-value=0.00012 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..|+++|++||||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.39 E-value=9.8e-05 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 301
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.38 E-value=9.2e-05 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||||++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999999987
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.37 E-value=0.00013 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..|++.|++||||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999876
No 303
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=0.00023 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||||++.+.+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4579999999999999999987
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=0.00016 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.....|+++|.+|+||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998763
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.36 E-value=0.00012 Score=49.68 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++.-.++++|++|+|||||++.+.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34456899999999999999998773
No 306
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.36 E-value=0.00013 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=-++++|++|+|||||++.+.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3478999999999999999987
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00012 Score=47.45 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998774
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.35 E-value=0.00011 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.147 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
=.++++|++|+|||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.35 E-value=0.00016 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-|++.|.+||||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.35 E-value=0.00014 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.|+++|+|||||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 311
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.35 E-value=0.00012 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~ 38 (121)
--++++|++|+|||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 347899999999999999887
No 312
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.35 E-value=0.00013 Score=51.56 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 578999999999999999987
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.34 E-value=0.00023 Score=48.41 Aligned_cols=21 Identities=48% Similarity=0.748 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 314
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.34 E-value=0.00032 Score=45.44 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=26.3
Q ss_pred hHHHHHhhhc---cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 4 LFYGLWKYIF---TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 4 ~~~~~~~~~~---~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+..+-+... .....-++++|++|+||||+++.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444433 23557799999999999999999865
No 315
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.34 E-value=0.00027 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.34 E-value=0.00013 Score=49.19 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.33 E-value=0.00018 Score=46.40 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.....|++.|++||||||+++.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567799999999999999999875
No 318
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.33 E-value=0.00016 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 319
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.32 E-value=0.00014 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999987
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.32 E-value=0.00017 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999876
No 321
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.32 E-value=0.00015 Score=50.40 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++.-.++|+|++|+|||||++.+.+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34567899999999999999999873
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.32 E-value=0.00019 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...|++.|++||||||+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 323
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.32 E-value=0.00015 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
++|++.|++||||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.31 E-value=8e-05 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH-h
Q 033349 17 EFHVLILGIDKAGKTTLLEKLK-S 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~-~ 39 (121)
.--++++|++|+||||+++.+. +
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999998 6
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.31 E-value=0.00014 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
--++++|++|+|||||++.++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999999986
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.31 E-value=0.0002 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...|++.|++||||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999873
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.31 E-value=0.00014 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||||++.+.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999987
No 328
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.30 E-value=0.0002 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+..-++|+|+.|||||||++.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.29 E-value=0.00017 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|+++|++||||||+++.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.29 E-value=0.00021 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.0
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++..-++|+|++|||||||++.+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999998763
No 331
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00021 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998865
No 332
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00021 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||||++.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999987
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.28 E-value=0.00014 Score=51.45 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=0.00021 Score=46.28 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....|+++|++|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999763
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.27 E-value=0.00016 Score=47.39 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....|+++|++||||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998763
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00022 Score=45.52 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...|++.|++||||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999865
No 337
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.25 E-value=0.00021 Score=45.74 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999998763
No 338
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.25 E-value=0.00022 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...|++.|.+||||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.24 E-value=0.00026 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....|+|+|.+||||||+.+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999999876
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.24 E-value=0.00024 Score=44.31 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00016 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=16.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.23 E-value=0.00026 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...-|++.|++||||||+++.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999999999763
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.22 E-value=0.00023 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....|++.|.+||||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999976
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.22 E-value=0.00021 Score=45.12 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 345
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.22 E-value=0.00035 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34689999999999999999987
No 346
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.22 E-value=0.0003 Score=48.43 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
......|+|.|++|||||||++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999999988755
No 347
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.21 E-value=0.00025 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
++..||+++|.++|||||+++++.-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHH
Confidence 4579999999999999999999753
No 348
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.21 E-value=0.00025 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35789999999999999999987
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.20 E-value=0.00025 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...|+++|.+||||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.20 E-value=0.00039 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...+-++++|++|||||||++.+...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35677999999999999999998663
No 351
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=0.0003 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.....|+++|.+|+||||+++.+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999876
No 352
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.18 E-value=0.00028 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|++.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00032 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-++++|.+|+|||||+.++...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 446889999999999999998763
No 354
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.17 E-value=0.00032 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-.++++|++|+|||||++.+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999873
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.17 E-value=0.00021 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-.++++|++|+|||+|++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999873
No 356
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.17 E-value=0.00036 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 357
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.17 E-value=0.00031 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++|+|++|+|||||++.+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 499999999999999999987
No 358
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.16 E-value=0.00028 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-|++.|++||||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 359
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.16 E-value=0.00027 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-++|+|++|||||||.+.+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3789999999999999998763
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.16 E-value=0.00031 Score=44.65 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 361
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.16 E-value=0.00029 Score=44.62 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|++.|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 362
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.15 E-value=0.0002 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 34689999999999999999887
No 363
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.15 E-value=0.00026 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~ 38 (121)
.-++++|++|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999998
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.15 E-value=0.00035 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....-++|+|++|+|||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45577999999999999999998774
No 365
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.14 E-value=0.00018 Score=47.60 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++..-|++.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45677999999999999999998773
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.14 E-value=0.00028 Score=48.93 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--++++|++|+||||+++.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999999764
No 367
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.14 E-value=0.0003 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++++|++|+|||+|++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 368
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.13 E-value=0.00074 Score=44.10 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-.+++.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.00029 Score=48.01 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.00026 Score=47.53 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.....|+++|++||||||+.+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998764
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.12 E-value=0.00036 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~ 38 (121)
....|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00044 Score=43.76 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+...|+++|.+|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999876
No 373
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.11 E-value=0.00027 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999987
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.11 E-value=0.00038 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-.++++|++|+|||||++.+.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999873
No 375
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.10 E-value=0.00045 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..|++.|.+||||||+++.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 376
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00064 Score=43.62 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
No 377
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.09 E-value=0.00048 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998763
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.09 E-value=0.00011 Score=47.70 Aligned_cols=22 Identities=50% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-|++.|++||||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 379
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.09 E-value=0.00032 Score=57.18 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345799999999999999999987
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.08 E-value=0.00046 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-|++.|.+||||||+++.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.07 E-value=0.00041 Score=43.40 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 382
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.06 E-value=0.00054 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+.|+|.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.06 E-value=0.00038 Score=48.22 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--++++|++|+||||++..+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999998774
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.00043 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 385
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00051 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+.|+|.|++||||||+.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999866
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.04 E-value=0.00042 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
--++++|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3478899999999999999875
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.03 E-value=0.00035 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3579999999999999999987
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.03 E-value=0.00066 Score=48.28 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+..-.++++|++|+||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456899999999999999999773
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.03 E-value=0.00041 Score=48.46 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999874
No 390
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.03 E-value=0.001 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
......+++.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45667899999999999999999987
No 391
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.03 E-value=0.00076 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.....+++.|++|+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456699999999999999999987
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.00046 Score=45.65 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
|+++|+|||||+|.+..+...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999998763
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.02 E-value=0.00044 Score=46.90 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++++|++|+|||+|++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999987
No 394
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.99 E-value=0.00046 Score=43.68 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.99 E-value=0.00059 Score=46.62 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+.|+|.|.+||||||+++.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999863
No 396
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.97 E-value=0.00071 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
=.++++|++|+|||||++.+.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999884
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00058 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446899999999999999999873
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.95 E-value=0.00064 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 399
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.95 E-value=0.00073 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=22.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+.--++++|++|+||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998764
No 400
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.95 E-value=0.00057 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 401
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.94 E-value=0.00096 Score=48.76 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
.+...+.....-.++++|++|+|||++++.+....
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44555555566688999999999999999998743
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.94 E-value=0.00082 Score=44.58 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVY 41 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~ 41 (121)
...-|++.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56779999999999999999997743
No 403
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.93 E-value=0.00063 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-+++++|++|+|||||++.+.+
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTT
T ss_pred CcEEEEEecCCCcHHHHHHHhcc
Confidence 35789999999999999999987
No 404
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00073 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
=.++++|++|+|||||++.+.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 35899999999999999999883
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.92 E-value=0.0009 Score=43.52 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....-|+++|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999865
No 406
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=0.00012 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 35789999999999999999976
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00047 Score=50.46 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..=.++|+|++|+|||||++.+++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4557899999999999999999774
No 408
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.00068 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+.=-++++|+.|+|||||++.+.+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3345799999999999999999883
No 409
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.91 E-value=0.0099 Score=43.13 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...|+++|.+|+||||++..+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999998864
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00062 Score=48.30 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+.--++++|++|+||||++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3456899999999999999998774
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.00073 Score=42.23 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.|++.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999866
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.00068 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999975
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.89 E-value=0.0006 Score=46.61 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
--++|+|++|+|||||+..+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34789999999999999998764
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.88 E-value=0.00071 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
--++++|++|+|||||+..++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999987
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.87 E-value=0.00082 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++++|++||||||+++.+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3489999999999999999987
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.00074 Score=43.41 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998763
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00065 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.86 E-value=0.00072 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999998
No 419
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.85 E-value=0.0013 Score=45.23 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....-+++.|++|+|||++++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455689999999999999999987
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.84 E-value=0.00077 Score=43.72 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-+++.|++|+|||++++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 421
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.84 E-value=0.0012 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+.=-++|+|++|+||||+++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33445899999999999999999873
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.84 E-value=0.00071 Score=49.96 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..--++++|++|+|||||++.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3456899999999999999998763
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.84 E-value=0.00073 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
--++++|++|+|||||++.+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 45789999999999999999874
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.82 E-value=0.0008 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-|++.|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 425
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.80 E-value=0.001 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
=.++++|++|+|||||++.+.+.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 45899999999999999999874
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.00099 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.76 E-value=0.00091 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999988
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.76 E-value=0.00061 Score=45.86 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+...|++.|.+|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999999999998763
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.00069 Score=47.07 Aligned_cols=20 Identities=45% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++|+|+.|+|||||++.+.+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHh
Confidence 57889999999999999987
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.00084 Score=46.06 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+.-+++.|++|+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456777899999999999999873
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.75 E-value=0.0013 Score=42.51 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.+.|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999999876
No 432
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.0013 Score=43.75 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44589999999999999999977
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.74 E-value=0.0014 Score=43.11 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-|++.|++|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.74 E-value=0.00096 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999873
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.73 E-value=0.0022 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.....|+++|++|+||||+.+.+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999998765
No 436
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.72 E-value=0.0011 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=+++++|++|+|||||++.+.+
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34789999999999999999987
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.72 E-value=0.0013 Score=44.97 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.....+++.|++|+|||++++.+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999987663
No 438
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.71 E-value=0.0014 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++|+|+.|+|||||++.+.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999883
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.71 E-value=0.0014 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+...|+++|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999875
No 440
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.69 E-value=0.0014 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++++|+.|+|||||++.+.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.69 E-value=0.0013 Score=40.37 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.....+++.|++|+|||++++.+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999987
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.69 E-value=0.0011 Score=41.07 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+|+|+.|+|||+++.++.-
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999864
No 443
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.67 E-value=0.0014 Score=43.75 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.+++.++|++||||||+++.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 444
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.002 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999763
No 445
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0022 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|...-.+..--+++.||||+|||+|++++.+
T Consensus 206 ~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 206 KFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34444445567799999999999999999987
No 446
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.65 E-value=0.0012 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.+++.|++|+|||+|++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999976
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.0012 Score=47.12 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+..--++++|++|+|||||++.+.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34557899999999999999999863
No 448
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.62 E-value=0.0013 Score=43.83 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=18.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+..-|++.|++|+||||+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
No 449
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0022 Score=44.39 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998763
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0016 Score=45.33 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987
No 451
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.62 E-value=0.024 Score=41.45 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=50.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCC------------CCCCC---CcccCCCceEEE----EEEE-CC--eEEEEE
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------------EGLPP---DRIVPTVGLNIG----RIEV-SN--SKLVFW 73 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~------------~~~~~---~~~~~t~~~~~~----~~~~-~~--~~~~i~ 73 (121)
+..=|.|+|+.++|||+|++.+++..... ...|. .....|.|+-.- .+.. ++ ..+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44556799999999999999776432100 01111 233456665421 1222 22 569999
Q ss_pred ECCCCcch-------HHHHHHHhhccCEEEEEEe-CCCcccHHHH
Q 033349 74 DLGGQPGL-------RSIWEKYYEEAHAVVFVID-AACPSRFEDS 110 (121)
Q Consensus 74 d~~g~~~~-------~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~ 110 (121)
||.|.... ..++...+--++.+|+-.. ..+...++.+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L 190 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHL 190 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHH
Confidence 99983311 1222222234565555332 2344455555
No 452
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.61 E-value=0.0019 Score=44.07 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998763
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.61 E-value=0.0015 Score=41.96 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|++.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999866
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.59 E-value=0.0013 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 455
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0026 Score=46.30 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+|..+-.+..--+++.||||+|||+|++++.+
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 44444445567799999999999999999987
No 456
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.0013 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999876
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0018 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++++|++|+|||||++.+.+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 689999999999999999883
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.59 E-value=0.00086 Score=46.09 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+..-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999865
No 459
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.59 E-value=0.0016 Score=42.85 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.+++.|++|+|||+++.++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999888764
No 460
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.59 E-value=0.0023 Score=49.25 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..+...+.....-.++++|++|+|||++++.+...
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34555555566677999999999999999999874
No 461
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.58 E-value=0.0015 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....+++.|++|+|||++++.+...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999773
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.57 E-value=0.0025 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+++.|++|+|||++++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 463
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0016 Score=45.53 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=25.7
Q ss_pred HhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...+...+.-.+.+.|++|+|||++++.++..
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33344567778999999999999999999774
No 464
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0029 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=24.0
Q ss_pred HhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
|...-.+..--+++.||||+|||+|++++.+
T Consensus 198 ~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 198 YEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3333334455699999999999999999987
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0017 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.|+|+|++|+|||||...+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 466
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0031 Score=48.51 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..+.+.+.....-.++++|++|+|||++++.+...
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34555555667778999999999999999999763
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0016 Score=42.83 Aligned_cols=21 Identities=29% Similarity=0.293 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-+++.|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999888754
No 468
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.51 E-value=0.0017 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-|+|.|++|||||||...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 35889999999999999998774
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.50 E-value=0.0017 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+ .+|+|+.|+|||||+.+++.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHH
Confidence 44 56999999999999999864
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.49 E-value=0.0018 Score=42.40 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++++|++|+|||+|+..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0019 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...-|+++|++||||||+++++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999876
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.46 E-value=0.0019 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-|+|+|++|+|||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 473
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.003 Score=45.50 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.5
Q ss_pred HHhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+|..+-.+..--+++.||||+|||.|++++.+
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 44444444566799999999999999999987
No 474
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.0019 Score=44.58 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-.++++|++|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.44 E-value=0.0021 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999873
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0025 Score=42.19 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-|++.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999874
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.44 E-value=0.0012 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-+++.|++|+|||++++.+...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 344889999999999999999774
No 478
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.0022 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--++++|++|+||||++..+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 446889999999999999998763
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0021 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999987
No 480
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.39 E-value=0.0038 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 481
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.39 E-value=0.002 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--+.|+|++|+|||||+..++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999874
No 482
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0044 Score=42.32 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 483
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0039 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-.+++.|++|+|||++++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999976
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.002 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999999876
No 485
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.35 E-value=0.0025 Score=43.90 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
--++|.|++|+|||+|++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 3578899999999999999876
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.35 E-value=0.0025 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-|+|+|++|||||+|...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35788999999999999999873
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.34 E-value=0.0029 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999987
No 488
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.30 E-value=0.0031 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=+++++|++|+|||||++.+.+
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999987
No 489
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.29 E-value=0.0026 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999999763
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.29 E-value=0.0025 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-.++++|++|+|||+|++.+...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999773
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0031 Score=49.28 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+...+.....-.++++|++|+|||++++.+...
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 4444444555567899999999999999999874
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.27 E-value=0.0029 Score=43.81 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-.+++.|++|+|||++++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.26 E-value=0.003 Score=41.06 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+.|++.|++|+||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999866
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.25 E-value=0.0025 Score=47.17 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 033349 20 VLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~ 38 (121)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 495
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.25 E-value=0.035 Score=35.30 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=26.1
Q ss_pred eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 68 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
..+.++|+|+.. .......+..+|.++++...+..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~ 110 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL 110 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH
Confidence 578999999865 23445566789999999976544
No 496
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.24 E-value=0.0032 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....+++.|++|+|||++++.+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999873
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.23 E-value=0.0031 Score=44.31 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....+++.|++|+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999987
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.23 E-value=0.0015 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++|+|+.|+|||||++.+.+
T Consensus 700 eivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999987
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.23 E-value=0.0019 Score=48.32 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+...++++|++|||||||++.+.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999999774
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.22 E-value=0.0033 Score=42.10 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....+++.|++|+|||++++.+...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4567999999999999999999873
Done!