Citrus Sinensis ID: 033350

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYESEYSYRI
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEcccccHHHHHHHHcccccccccccccccccccccHHHHHHccccccccEEEEccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHcccHHccccHHEEEccccccccccEEEccccccccEEEEEEcccccccccEEEEEc
Coil and Loop (DISEMBL)
mliyprmmavhtlfseeadgslttpiipltsehitedgIFLLENGEDALIYIGDRVNSYILDQLFgisltrfspqvvfvhgsgpitpmsvsyssfdldgsclvlteslhftdyeseysyri
Flexible Loop (DISEMBL)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTeslhftdyeseysyri
Low Complexity Region (SEG)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYESEYSYRI
Disordered region (IsUnstruct)
**IYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYE*******
Disordered Region (DISOPRED)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYESEYSYRI
Disordered Region (DISEMBL)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDY********
Disordered Region (DISPRO)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYESEYSYRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMSVSYSSFDLDGSCLVLTESLHFTDYESEYSYRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9M081	1080	Protein transport protein	yes	no	0.553	0.062	0.507	1e-15
Q9M291	1096	Protein transport protein	no	no	0.545	0.060	0.515	4e-14

>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 53/67 (79%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRM++VH L  ++ +GS+  P IPL+SEHI+ +G++ LENGED L+++G+ V+S IL
Sbjct: 931 LVYPRMISVHDLDVKDTEGSVLPPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDIL 990

Query: 62  DQLFGIS 68
            +LF +S
Sbjct: 991 QKLFAVS 997

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 50/66 (75%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L+YPRM+AVH L + + + ++    IPL SEH++++G++ LENGED LIYIG+ VNS IL
Sbjct: 946  LVYPRMIAVHDLDANDNEENVVPCPIPLQSEHLSDEGVYFLENGEDGLIYIGESVNSDIL 1005

Query: 62   DQLFGI 67
             +LF +
Sbjct: 1006 QKLFNV 1011

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
359493759	1124	PREDICTED: protein transport protein Sec	0.553	0.059	0.641	3e-18
147769521	418	hypothetical protein VITISV_020350 [Viti	0.702	0.203	0.546	6e-18
224131342	1080	predicted protein [Populus trichocarpa]	0.553	0.062	0.611	3e-17
356574157	1087	PREDICTED: protein transport protein Sec	0.553	0.061	0.597	5e-17
356534416	1085	PREDICTED: protein transport protein Sec	0.553	0.061	0.567	2e-16
449458918	1105	PREDICTED: protein transport protein Sec	0.545	0.059	0.597	4e-16
449498633	577	PREDICTED: protein transport protein Sec	0.545	0.114	0.597	4e-16
255542372	1094	Protein transport protein Sec24C, putati	0.652	0.072	0.481	7e-15
297802748	1067	hypothetical protein ARALYDRAFT_491448 [	0.545	0.061	0.515	5e-14
334187094	1080	sec24-like transport protein [Arabidopsi	0.553	0.062	0.507	6e-14

>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 53/67 (79%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L+YPRMMA+H L S E D  L  P IPL+SEH+++DGI+LLENG+D LIYIG+ VN  I+
Sbjct: 975  LVYPRMMAIHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIM 1034

Query: 62   DQLFGIS 68
             QLFGIS
Sbjct: 1035 RQLFGIS 1041

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769521|emb|CAN70226.1| hypothetical protein VITISV_020350 [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 1/86 (1%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRMMA+H L S E D  L  P IPL+SEH+++DGI+LLENG+D LIYIG+ VN  I+
Sbjct: 252 LVYPRMMAIHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIM 311

Query: 62  DQLFGISLTRFSP-QVVFVHGSGPIT 86
            QLFGIS     P Q V      P++
Sbjct: 312 RQLFGISSVDVIPSQFVLQQYDNPLS 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRM+A+H L S+EADGS   P + L+SE+++EDGI+LLENG+D LIYIG+ VNS  L
Sbjct: 926 LVYPRMIAIHNLDSQEADGSRIPPALALSSEYVSEDGIYLLENGQDGLIYIGNSVNSDTL 985

Query: 62  DQLFGIS 68
            +LFG+S
Sbjct: 986 QKLFGLS 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574157|ref|XP_003555218.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 54/67 (80%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L+YPRMMA+H L S+E D S+  P +PL+SEHI++DGI+LLENG D LIY+GD VN  I+
Sbjct: 937  LVYPRMMAIHDLDSKEDDDSVIPPFLPLSSEHISDDGIYLLENGHDCLIYVGDSVNPDIV 996

Query: 62   DQLFGIS 68
             +LFG++
Sbjct: 997  QKLFGVA 1003

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534416|ref|XP_003535751.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 54/67 (80%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L+YPRMMA+H L S+E + S+  P +PL+SEH+++DGI+LLENG D LIY+GD VN  I+
Sbjct: 935  LVYPRMMAIHDLDSKEDEDSVIPPFLPLSSEHVSDDGIYLLENGHDCLIYVGDSVNPDIV 994

Query: 62   DQLFGIS 68
             +LFG++
Sbjct: 995  QKLFGVA 1001

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458918|ref|XP_004147193.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Cucumis sativus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L+YPRM+A+H L +E+ D +  TPI PL+SEH++E+GI+LLENGED L+Y+G+ V+  IL
Sbjct: 955  LVYPRMLAIHNLDTEDGDSTPGTPI-PLSSEHVSEEGIYLLENGEDCLVYVGNLVDRDIL 1013

Query: 62   DQLFGIS 68
             QLFGIS
Sbjct: 1014 QQLFGIS 1020

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498633|ref|XP_004160590.1| PREDICTED: protein transport protein Sec24-like CEF-like [Cucumis sativus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRM+A+H L +E+ D +  TPI PL+SEH++E+GI+LLENGED L+Y+G+ V+  IL
Sbjct: 427 LVYPRMLAIHNLDTEDGDSTPGTPI-PLSSEHVSEEGIYLLENGEDCLVYVGNLVDRDIL 485

Query: 62  DQLFGIS 68
            QLFGIS
Sbjct: 486 QQLFGIS 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 57/79 (72%)

Query: 2    LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
            L++PRM+A+H L ++E + SL    +PL+SEH+ +DGI+LLENG++ LIYIG+ V+S +L
Sbjct: 943  LVHPRMLAIHDLDTQEGNESLIPNALPLSSEHVKDDGIYLLENGQEGLIYIGNSVDSSVL 1002

Query: 62   DQLFGISLTRFSPQVVFVH 80
             QLFG+S     P    +H
Sbjct: 1003 QQLFGVSSVDGIPTQFVLH 1021

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802748|ref|XP_002869258.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata] gi|297315094|gb|EFH45517.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 53/66 (80%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRM++VH L +++ +GS+  P IPL+SEHI+ +G++ LENGED L+Y+G+ V+S IL
Sbjct: 931 LVYPRMISVHDLDAKDNEGSVLPPPIPLSSEHISNEGVYFLENGEDGLLYVGESVDSDIL 990

Query: 62  DQLFGI 67
            +LF +
Sbjct: 991 QKLFAV 996

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 53/67 (79%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
           L+YPRM++VH L  ++ +GS+  P IPL+SEHI+ +G++ LENGED L+++G+ V+S IL
Sbjct: 931 LVYPRMISVHDLDVKDTEGSVLPPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDIL 990

Query: 62  DQLFGIS 68
            +LF +S
Sbjct: 991 QKLFAVS 997

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2100202	1096	CEF "AT3G44340" [Arabidopsis t	0.545	0.060	0.515	4.7e-13
FB|FBgn0262126	1193	gho "ghost" [Drosophila melano	0.512	0.051	0.338	2.4e-05
WB|WBGene00004756	984	sec-24.2 [Caenorhabditis elega	0.528	0.065	0.348	0.00018
GENEDB_PFALCIPARUM|PF13_0324	940	PF13_0324 "Sec24 subunit, puta	0.528	0.068	0.304	0.00022
UNIPROTKB|C0H5J6	940	PF13_0324 "Sec24 subunit, puta	0.528	0.068	0.304	0.00022
ASPGD|ASPL0000039645	1031	AN3080 [Emericella nidulans (t	0.619	0.072	0.301	0.00039
ZFIN|ZDB-GENE-070117-2501	1029	sec24d "SEC24 family, member D	0.528	0.062	0.298	0.0005

TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 34/66 (51%), Positives = 50/66 (75%)

Query:     2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
             L+YPRM+AVH L + + + ++    IPL SEH++++G++ LENGED LIYIG+ VNS IL
Sbjct:   946 LVYPRMIAVHDLDANDNEENVVPCPIPLQSEHLSDEGVYFLENGEDGLIYIGESVNSDIL 1005

Query:    62 DQLFGI 67
              +LF +
Sbjct:  1006 QKLFNV 1011

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query:     3 IYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILD 62
             +YPR + +H +  EE D  L TP+   T E   EDG ++LENG    +++G  ++   + 
Sbjct:  1047 LYPRFIPIHNVVPEETD--LPTPV-RCTHEKTQEDGAYILENGVHLFVWLGQALSPDFVQ 1103

Query:    63 QLFGI 67
              +FG+
Sbjct:  1104 SVFGV 1108

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0070971 "endoplasmic reticulum exit site" evidence=IDA

GO:0003331 "positive regulation of extracellular matrix constituent secretion" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0048081 "positive regulation of cuticle pigmentation" evidence=IMP

GO:0030011 "maintenance of cell polarity" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0035149 "lumen formation, open tracheal system" evidence=IMP

GO:0034394 "protein localization to cell surface" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

WB|WBGene00004756 sec-24.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query:     3 IYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILD 62
             IYPR+  ++ L S   D S   P +PL+ EHI+  G++L+  G  A +Y+    +   L 
Sbjct:   841 IYPRLYRLNELASMPEDQS--PPALPLSFEHISRGGVYLMITGTIAFVYVASSADPGFLV 898

Query:    63 QLFGIS 68
              +FG S
Sbjct:   899 NVFGTS 904

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GENEDB_PFALCIPARUM|PF13_0324 PF13_0324 "Sec24 subunit, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 103 (41.3 bits), Expect = 0.00022, P = 0.00022
 Identities = 21/69 (30%), Positives = 42/69 (60%)

Query:     4 YPRMMAVHTLFSE----EADGSLTTP-IIPLTSEHITEDGIFLLENGEDALIYIGDRVNS 58
             YPRM ++H L       + + ++  P  + LT E++T+DG +++E+GE  +++IG  +N 
Sbjct:   770 YPRMFSLHNLEKHHGHLDENNNIVFPDALNLTCENMTQDGCYIVEDGETIVMWIGRSINP 829

Query:    59 YILDQLFGI 67
               +  +FG+
Sbjct:   830 QWIYAVFGV 838

GO:0008565 "protein transporter activity" evidence=ISS

UNIPROTKB|C0H5J6 PF13_0324 "Sec24 subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 103 (41.3 bits), Expect = 0.00022, P = 0.00022
 Identities = 21/69 (30%), Positives = 42/69 (60%)

Query:     4 YPRMMAVHTLFSE----EADGSLTTP-IIPLTSEHITEDGIFLLENGEDALIYIGDRVNS 58
             YPRM ++H L       + + ++  P  + LT E++T+DG +++E+GE  +++IG  +N 
Sbjct:   770 YPRMFSLHNLEKHHGHLDENNNIVFPDALNLTCENMTQDGCYIVEDGETIVMWIGRSINP 829

Query:    59 YILDQLFGI 67
               +  +FG+
Sbjct:   830 QWIYAVFGV 838

GO:0008565 "protein transporter activity" evidence=ISS

ASPGD|ASPL0000039645 AN3080 [Emericella nidulans (taxid:162425)]

 Score = 101 (40.6 bits), Expect = 0.00039, P = 0.00039
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query:     1 MLIYPRMMAVHTLFSEEA----DGSLTTP-IIPLTSEHITEDGIFLLENGEDALIYIGDR 55
             + +YPR++ +H +  E+      G L  P  +  +   I E G +L+++G+  L++I  +
Sbjct:   846 LYLYPRIIPIHNMQPEDGFPNEQGQLQVPPSLRASFSKIEEGGAYLVDDGQQCLLWIHAQ 905

Query:    56 VNSYILDQLFG---ISLTRFSPQ 75
             V+  +L+ LFG    SL   SPQ
Sbjct:   906 VSPNLLEDLFGPGQTSLQELSPQ 928

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-070117-2501 sec24d "SEC24 family, member D (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 0.00050, P = 0.00050
 Identities = 20/67 (29%), Positives = 39/67 (58%)

Query:     1 MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYI 60
             +L+YPR++ +HT+  + +  SL   +   + E + E G+FLLENG    +++G   +  +
Sbjct:   880 VLLYPRLIPLHTM--DVSSESLPAAV-RCSEERLNESGMFLLENGLSMFLWLGQACSPDL 936

Query:    61 LDQLFGI 67
             +  LF +
Sbjct:   937 IQNLFNV 943


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.49    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  111 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.58u 0.14s 13.72t   Elapsed:  00:00:00
  Total cpu time:  13.58u 0.14s 13.72t   Elapsed:  00:00:00
  Start:  Sat May 11 00:12:02 2013   End:  Sat May 11 00:12:02 2013

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0070278 "extracellular matrix constituent secretion" evidence=IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP

GO:0060536 "cartilage morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027410001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (1036 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003489001	SubName- Full=Chromosome undetermined scaffold_144, whole genome shotgun sequence; (763 aa)				•	•	•	•	•	0.707
	GSVIVG00000803001	SubName- Full=Chromosome undetermined scaffold_108, whole genome shotgun sequence; (756 aa)				•	•	•	•	•	0.663
	GSVIVG00020123001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (755 aa)				•	•	•	•	•	0.620
	GSVIVG00028684001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (1125 aa)				•		•	•		0.475
	GSVIVG00016738001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (865 aa)						•			0.456
	GSVIVG00036398001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (889 aa)				•			•		0.450

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
COG5028	861	COG5028, COG5028, Vesicle coat complex COPII, subu	1e-04
pfam00626	76	pfam00626, Gelsolin, Gelsolin repeat	0.002

>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 3   IYPRMMAVHTLFSEE---ADGSLTTPI-IPLTSEHITEDGIFLLENGEDALIYIGDRVNS 58
           IYP + A+H +  E     +G L  P  I  TS  +   G++L++ G+   ++ G     
Sbjct: 708 IYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVP 767

Query: 59  YILDQLFG 66
            +L  LFG
Sbjct: 768 SLLQDLFG 775

Length = 861

>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 25 PIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLT 70
          P +PL+ E +     +LL+ G    +++G    S   ++LF   L 
Sbjct: 6  PPVPLSQESLNSGDCYLLDTGFTIFLWVG--KGSSPDEKLFAALLA 49

Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	99.88
PTZ00395	1560	Sec24-related protein; Provisional	99.87
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	99.84
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	99.81
PF00626	76	Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel	98.83
PLN00162	761	transport protein sec23; Provisional	98.21
smart00262	90	GEL Gelsolin homology domain. Gelsolin/severin/vil	98.06
KOG0443	827	consensus Actin regulatory proteins (gelsolin/vill	96.99
KOG0443	827	consensus Actin regulatory proteins (gelsolin/vill	96.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	92.38

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.6e-23  Score=188.73  Aligned_cols=118  Identities=26%  Similarity=0.414  Sum_probs=102.9

Q ss_pred             ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--ccccC
Q 033350            2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--QVVFV   79 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~~~Lp   79 (121)
                      ++||||+|+|++..+.+....+|.++|+|.|+|+.+||||||||+++|||||++|++.|+|+||+|++.++|+  ...||
T Consensus       856 ~~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lp  935 (1007)
T KOG1984|consen  856 FFYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLP  935 (1007)
T ss_pred             hhccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCcccccccccccccc
Confidence            6899999999998876655589999999999999999999999999999999999999999999999999999  68999


Q ss_pred             CCCCCCCcceeeeee----------------ecCCCCeeEeeecceecccccccee
Q 033350           80 HGSGPITPMSVSYSS----------------FDLDGSCLVLTESLHFTDYESEYSY  119 (121)
Q Consensus        80 ~~dn~ls~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  119 (121)
                      +.||++|++.+-.++                -..||+-..+.|-+++++--...||
T Consensus       936 e~dn~lS~k~r~~i~~i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~~~~~~sY  991 (1007)
T KOG1984|consen  936 ELDNPLSRKVRNVISLIRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDRGRNISSY  991 (1007)
T ss_pred             ccCcHHHHHHHHHHHHHHhccccccccEEEecCCCchhhhhhhhhhcccccCcccc
Confidence            999999998774432                3456777888888888887545555

>PTZ00395 Sec24-related protein; Provisional

Probab=99.87  E-value=4.4e-23  Score=191.89  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             ceecceeecCcCCCC-------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC
Q 033350            2 LIYPRMMAVHTLFSE-------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP   74 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~-------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~   74 (121)
                      ++|||||+||++..+       .++.+.+|+.++||+|+|+++|+||||||+.||||||++|+|+|+++|||+.... ..
T Consensus      1402 yLYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~-~~ 1480 (1560)
T PTZ00395       1402 YVYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTE-KN 1480 (1560)
T ss_pred             hhcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccc-cc
Confidence            799999999998433       2345679999999999999999999999999999999999999999999974222 11


Q ss_pred             ccccCCCCCCCCcceeeeee-----------------ecCCCCeeEeeecceeccccccceec
Q 033350           75 QVVFVHGSGPITPMSVSYSS-----------------FDLDGSCLVLTESLHFTDYESEYSYR  120 (121)
Q Consensus        75 ~~~Lp~~dn~ls~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (121)
                      ...||++||++|+|-+..+.                 .-.|+....|...|+||+.+.+.||.
T Consensus      1481 ~~eLPelDT~iS~RVrnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s~LVEDRs~g~~SYv 1543 (1560)
T PTZ00395       1481 AHELNLTDTPNAQKVQRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLISLCVEDKADKEYSYV 1543 (1560)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHhccCCCcceEEEEeCCCchHHHHHHhCeecCCCCCCCHH
Confidence            45789999999987655543                 22333444567789999999999984

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.6e-22  Score=181.32  Aligned_cols=119  Identities=20%  Similarity=0.330  Sum_probs=108.2

Q ss_pred             ceecceeecCcCCCC-----CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--
Q 033350            2 LIYPRMMAVHTLFSE-----EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--   74 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~-----~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--   74 (121)
                      +|||+||++|++..+     .++.+++|+++++|+|.++++|+||||+|..+|||||++++|+++.++||++.+++++  
T Consensus       733 ~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~~vfg~~~~adi~~~  812 (887)
T KOG1985|consen  733 YIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLFDVFGVSTLADIPIG  812 (887)
T ss_pred             hhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccccccCcchHhhcccc
Confidence            689999999999875     4677889999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccCCCCCCCCcceeeeeeecCCCCee-----------------Eeeecceeccccccceec
Q 033350           75 QVVFVHGSGPITPMSVSYSSFDLDGSCL-----------------VLTESLHFTDYESEYSYR  120 (121)
Q Consensus        75 ~~~Lp~~dn~ls~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  120 (121)
                      +..||+.+|+.|+|-..|+.+.||.|-.                 .|..+|++|+.|+..||+
T Consensus       813 ~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~  875 (887)
T KOG1985|consen  813 KYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYY  875 (887)
T ss_pred             cccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHH
Confidence            7999999999999999998887776632                 344579999999999985

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=99.81  E-value=1.5e-20  Score=167.98  Aligned_cols=119  Identities=20%  Similarity=0.255  Sum_probs=104.1

Q ss_pred             ceecceeecCcCCCCC----CCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--c
Q 033350            2 LIYPRMMAVHTLFSEE----ADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--Q   75 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~----~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~   75 (121)
                      .+||++|++|+|..+.    ++....|.++++|.+.++++|+||||||.++|||||++++|++++|+||++++.+|+  .
T Consensus       707 ~iYP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k  786 (861)
T COG5028         707 NIYPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGK  786 (861)
T ss_pred             hhccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccc
Confidence            5899999999998873    456789999999999999999999999999999999999999999999999999999  8


Q ss_pred             cccCCCCCCCCcceeeee-----------------eecCCCC-eeEeeecceeccccccceec
Q 033350           76 VVFVHGSGPITPMSVSYS-----------------SFDLDGS-CLVLTESLHFTDYESEYSYR  120 (121)
Q Consensus        76 ~~Lp~~dn~ls~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~  120 (121)
                      ..+|+.+|++|++-+--+                 -=+.||+ +..|---|+||+.+.-.||+
T Consensus       787 ~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~lvlVR~~~d~s~~~~~~s~lVEDk~~n~~SY~  849 (861)
T COG5028         787 FTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSYL  849 (861)
T ss_pred             cccCCcCCHHHHHHHHHHHHHHhhCCCCccceEEEecCCCcchhhheehheecccccCCccHH
Confidence            889999999987654321                 1245677 78888889999999888885

>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []

Probab=98.83  E-value=1.9e-09  Score=69.55  Aligned_cols=49  Identities=18%  Similarity=0.481  Sum_probs=41.8

Q ss_pred             cCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCC
Q 033350           22 LTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRF   72 (121)
Q Consensus        22 ~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~   72 (121)
                      .+|+..++|.+.|.++|+||||+|..+|+|+|++  +...+..+++....+
T Consensus         3 ~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~--~~~~e~~~a~~~a~~   51 (76)
T PF00626_consen    3 VRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKK--SSPEEKAFAAQLAQE   51 (76)
T ss_dssp             EEEEEESSSGGGEETTSEEEEEESSEEEEEEHTT--SHHHHHHHHHHHHHH
T ss_pred             ccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEecc--CCHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999  666777777654443

It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....

>PLN00162 transport protein sec23; Provisional

Probab=98.21  E-value=1.2e-06  Score=79.56  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             CceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCC
Q 033350            1 MLIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVN   57 (121)
Q Consensus         1 ~~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~   57 (121)
                      .+|||+||+.|.   +     .+|+++.|+.++|+++||||||+|.+++||.|..+.
T Consensus       617 ~mI~P~L~sy~~---~-----~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia  665 (761)
T PLN00162        617 VMIQPTLISYSF---N-----GPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIA  665 (761)
T ss_pred             HhhCCeEEEecC---C-----CCCcceecchhhccCCceEEEeCCCEEEEEecCccc
Confidence            379999999984   1     258889999999999999999999999999997654

>smart00262 GEL Gelsolin homology domain

Probab=98.06  E-value=6.1e-06  Score=55.18  Aligned_cols=37  Identities=11%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             ccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHH
Q 033350           27 IPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQ   63 (121)
Q Consensus        27 l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~d   63 (121)
                      .+++.+.|.++.+|+||+|..+|+|+|+.+++.--..
T Consensus        16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~   52 (90)
T smart00262       16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKK   52 (90)
T ss_pred             cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHH
Confidence            5788999999999999999999999999999654433

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.

>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]

Probab=96.99  E-value=0.00086  Score=61.66  Aligned_cols=90  Identities=19%  Similarity=0.320  Sum_probs=59.1

Q ss_pred             ecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCC-------CCCCCCC--
Q 033350            4 YPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGI-------SLTRFSP--   74 (121)
Q Consensus         4 YPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv-------~s~~~i~--   74 (121)
                      -||||.-+.-    .|.+..-.....+-+.|..+.+||||++..+|+|||+.++++--..++..       +.....+  
T Consensus       619 ~PrLF~Cs~~----~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~~p~gr~~~  694 (827)
T KOG0443|consen  619 DPRLFSCSNK----TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETDLPEGRDPR  694 (827)
T ss_pred             CCcEEEEEec----CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhccCcccCCCC
Confidence            4667766652    23333334457888999999999999999999999999999887765532       2233333  


Q ss_pred             --ccccCCCCCCCCcceeeee-eecCCC
Q 033350           75 --QVVFVHGSGPITPMSVSYS-SFDLDG   99 (121)
Q Consensus        75 --~~~Lp~~dn~ls~~~~~~~-~~~~~~   99 (121)
                        .+..++.-.|-.  ++.|- +||.+.
T Consensus       695 TPI~vV~qG~EPp~--Ftg~F~~WD~~k  720 (827)
T KOG0443|consen  695 TPIYVVKQGHEPPF--FTGFFLSWDPSK  720 (827)
T ss_pred             CceEEecCCCCCCh--hhccccccCCcc
Confidence              233444444433  55664 487765

>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]

Probab=96.63  E-value=0.0025  Score=58.70  Aligned_cols=39  Identities=13%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CccccccCCcEEEEEcC-CEEEEEecCCCCHHHHHHhhCC
Q 033350           29 LTSEHITEDGIFLLENG-EDALIYIGDRVNSYILDQLFGI   67 (121)
Q Consensus        29 LS~e~l~~~GiYLLdnG-~~l~LWvG~~v~p~ll~dlFGv   67 (121)
                      |+-+-|+.+++|+|||| ..||+|+|+.++.+=-+..++.
T Consensus       277 l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~  316 (827)
T KOG0443|consen  277 LTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSS  316 (827)
T ss_pred             hhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHH
Confidence            89999999999999999 9999999999998877766653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.72  E-value=0.058  Score=50.23  Aligned_cols=47  Identities=26%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             CCcccCccccccCCcEEEEEcCCEEEEEecC----------------------------------CCCHHHHHHhhCCCC
Q 033350           24 TPIIPLTSEHITEDGIFLLENGEDALIYIGD----------------------------------RVNSYILDQLFGISL   69 (121)
Q Consensus        24 Pp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~----------------------------------~v~p~ll~dlFGv~s   69 (121)
                      -.+++++..++++.-+||||-|++||||-|.                                  ..+|+|.|.+=|.++
T Consensus       636 lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWqaLgg~p~  715 (1255)
T KOG0444|consen  636 LEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQALGGNPD  715 (1255)
T ss_pred             eeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHHHhCCCCc
Confidence            3458999999999999999999999999974                                  357889998888765


Q ss_pred             C
Q 033350           70 T   70 (121)
Q Consensus        70 ~   70 (121)
                      -
T Consensus       716 e  716 (1255)
T KOG0444|consen  716 E  716 (1255)
T ss_pred             c
Confidence            4

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=92.38  E-value=0.11  Score=48.54  Aligned_cols=42  Identities=19%  Similarity=0.456  Sum_probs=33.8

Q ss_pred             cccCccccccCCcEEEEEcCCEEEEEecCCCCH-------HHHHHhhCC
Q 033350           26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNS-------YILDQLFGI   67 (121)
Q Consensus        26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p-------~ll~dlFGv   67 (121)
                      ...+-..-+.+.|+|+|||-..+|+|+|+..+.       .+.++++|.
T Consensus       756 ~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M  804 (1255)
T KOG0444|consen  756 KGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQM  804 (1255)
T ss_pred             hhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhh
Confidence            356677889999999999999999999998764       455666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-13
3efo_B	770	SEC24 related gene family, member D; copii, coat p	2e-08
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	3e-08
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	4e-08
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	1e-06

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTT-----------PIIPLTSEHITEDGIFLLENGEDALI 50
            IYP + ++H +  E      T              I  TS      G++L++NG +  +
Sbjct: 751 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFL 810

Query: 51  YIGDRVNSYILDQLFGIS 68
           ++G      ++  +FG  
Sbjct: 811 WMGGDAVPALVFDVFGTQ 828

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
             YP+++ +HTL   +   ++    +  +   ++E+GIFLL NG    +++G      ++
Sbjct: 622 FFYPQLLPIHTL---DVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELI 678

Query: 62  DQLFGIS 68
             +F + 
Sbjct: 679 QGIFNVP 685

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTT-----------PIIPLTSEHITEDGIFLLENGEDALI 50
            IYP + ++H +  E      T              I  TS      G++L++NG +  +
Sbjct: 635 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFL 694

Query: 51  YIGDRVNSYILDQLFGIS 68
           ++G      ++  +FG  
Sbjct: 695 WMGGDAVPALVFDVFGTQ 712

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 2   LIYPRMMAVHTL-----FSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRV 56
           +I+P +  +  L                P+  L++E +T +G FL++ G    I++G   
Sbjct: 599 MIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGC 658

Query: 57  NSYILDQLFGIS 68
           ++  ++ + G +
Sbjct: 659 DNNFIEDVLGYT 670

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 2   LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL 61
             YPR++ +     E        P +  + E ++   I+LLENG +  +++G  V   ++
Sbjct: 618 FFYPRLLPLTKSPVESTTEP---PAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVV 674

Query: 62  DQLFGIS 68
             LF +S
Sbjct: 675 QSLFSVS 681

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	99.89
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	99.86
3efo_B	770	SEC24 related gene family, member D; copii, coat p	99.86
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	99.84
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	99.82
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	99.02
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	98.93
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	97.96
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	97.87
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	97.86
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	97.8
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	97.77
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	97.74
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	97.55
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	97.2
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	96.69
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	96.53
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	96.4
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	95.45

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=99.89  E-value=2.5e-24  Score=191.20  Aligned_cols=119  Identities=18%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             ceecceeecCcCCCCC-----CCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--
Q 033350            2 LIYPRMMAVHTLFSEE-----ADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--   74 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~-----~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--   74 (121)
                      ++||+||++|++.++.     ++.+++|+.++||+++|+++|+||||||..+|||+|++|+|++++||||++++++++  
T Consensus       599 ~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~  678 (751)
T 3eh1_A          599 MIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQK  678 (751)
T ss_dssp             HHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSS
T ss_pred             hccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcc
Confidence            6899999999987652     234578999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccCCCCCCCCcceeeee---------------eecCCCCeeEeeecceeccccccceec
Q 033350           75 QVVFVHGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDYESEYSYR  120 (121)
Q Consensus        75 ~~~Lp~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (121)
                      +..||++||++|++.+..+               ....|+....|...|+||+-+++.||.
T Consensus       679 ~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~  739 (751)
T 3eh1_A          679 MTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYY  739 (751)
T ss_dssp             BCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHH
Confidence            6899999999998766553               344455566688899999999999984

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=99.86  E-value=5.8e-23  Score=182.64  Aligned_cols=116  Identities=21%  Similarity=0.311  Sum_probs=100.4

Q ss_pred             ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--ccccC
Q 033350            2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--QVVFV   79 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~~~Lp   79 (121)
                      ++||+||++|++..+.   ..+|++++||+++|+++|+||||||..+|||+|++|+|++++++||++++++++  +..||
T Consensus       618 ~iyP~L~~~h~~~~~~---~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp  694 (766)
T 3eh2_A          618 FFYPRLLPLTKSPVES---TTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLP  694 (766)
T ss_dssp             HHSCEEEECSSCCCSC---C--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCC
T ss_pred             HHhheEEEeecCCccc---ccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCC
Confidence            6899999999986553   357999999999999999999999999999999999999999999999999999  78899


Q ss_pred             CCCCCCCcceeeee---------------eecCCCCeeEeeecceeccccc-cceec
Q 033350           80 HGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDYES-EYSYR  120 (121)
Q Consensus        80 ~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~  120 (121)
                      ++||++|++.+..+               ....|+....|.+.|+||+-++ +.||.
T Consensus       695 ~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~SY~  751 (766)
T 3eh2_A          695 VLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYV  751 (766)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCCHH
Confidence            99999998776653               3445667778889999999876 78884

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=99.86  E-value=8.8e-23  Score=181.56  Aligned_cols=116  Identities=17%  Similarity=0.302  Sum_probs=100.6

Q ss_pred             ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--ccccC
Q 033350            2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--QVVFV   79 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~~~Lp   79 (121)
                      ++||+||++|++..+..   .+|++++||.++|+++|+||||||..+|||+|++|+|++++++||++++++++  +..||
T Consensus       622 ~iyP~L~~~h~l~~~~~---~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp  698 (770)
T 3efo_B          622 FFYPQLLPIHTLDVKST---MLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLP  698 (770)
T ss_dssp             HHSCEEEECTTCCSSSC---SCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCC
T ss_pred             hhccceEEEeccccccc---cCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCC
Confidence            68999999999876533   57999999999999999999999999999999999999999999999999999  78999


Q ss_pred             CCCCCCCcceeeee---------------eecCCCCeeEeeecceeccc-cccceec
Q 033350           80 HGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDY-ESEYSYR  120 (121)
Q Consensus        80 ~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~  120 (121)
                      ++||++|++.+..+               ....|+....|.+.|+||+. +.+.||.
T Consensus       699 ~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~SY~  755 (770)
T 3efo_B          699 EVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYV  755 (770)
T ss_dssp             CCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCCCHH
Confidence            99999998776653               34446666778889999998 8888884

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=99.84  E-value=7e-22  Score=176.47  Aligned_cols=119  Identities=17%  Similarity=0.232  Sum_probs=99.0

Q ss_pred             ceecceeecCcCCCC-----------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCC
Q 033350            2 LIYPRMMAVHTLFSE-----------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLT   70 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~-----------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~   70 (121)
                      ++||+||++|++.++           +++.+.+|++++||.++|+++|+||||||..+|+|+|++++|++++++||++++
T Consensus       635 ~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~  714 (810)
T 1pcx_A          635 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI  714 (810)
T ss_dssp             HHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCG
T ss_pred             hccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCch
Confidence            789999999998533           345688999999999999999999999999999999999999999999999999


Q ss_pred             CCCC--ccccCCC-CCCCCcceeeeeeecCCCCe-------eE------------------------eeecceecccccc
Q 033350           71 RFSP--QVVFVHG-SGPITPMSVSYSSFDLDGSC-------LV------------------------LTESLHFTDYESE  116 (121)
Q Consensus        71 ~~i~--~~~Lp~~-dn~ls~~~~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~~~~  116 (121)
                      .+++  +..||++ +|++|++.+..+...|..|.       .+                        |...|+||+.+++
T Consensus       715 ~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~  794 (810)
T 1pcx_A          715 FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNN  794 (810)
T ss_dssp             GGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTB
T ss_pred             hhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCC
Confidence            9999  7889999 99999888777643332221       22                        2357889998888


Q ss_pred             ceec
Q 033350          117 YSYR  120 (121)
Q Consensus       117 ~~~~  120 (121)
                      .||.
T Consensus       795 ~SY~  798 (810)
T 1pcx_A          795 ESYR  798 (810)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            8874

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=99.82  E-value=1.6e-21  Score=176.69  Aligned_cols=119  Identities=17%  Similarity=0.240  Sum_probs=78.7

Q ss_pred             ceecceeecCcCCCC-----------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCC
Q 033350            2 LIYPRMMAVHTLFSE-----------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLT   70 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~-----------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~   70 (121)
                      ++||+||++|++.++           +++.+.+|++++||.++|+++|+||||||..+|+|+|++++|++++++||++++
T Consensus       751 ~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~  830 (926)
T 1m2v_B          751 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI  830 (926)
T ss_dssp             HHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC--------
T ss_pred             hccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCch
Confidence            789999999998533           345688999999999999999999999999999999999999999999999999


Q ss_pred             CCCC--ccccCCC-CCCCCcceeeeeeecCCCCe-------eEe------------------------eecceecccccc
Q 033350           71 RFSP--QVVFVHG-SGPITPMSVSYSSFDLDGSC-------LVL------------------------TESLHFTDYESE  116 (121)
Q Consensus        71 ~~i~--~~~Lp~~-dn~ls~~~~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~~~  116 (121)
                      .+++  +..||++ ||++|++.+..+...|..|.       .|.                        ...|+||+.+++
T Consensus       831 ~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~  910 (926)
T 1m2v_B          831 FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNN  910 (926)
T ss_dssp             -----------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTTC
T ss_pred             hhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCC
Confidence            9999  7889999 99999988877654443331       222                        256888888888


Q ss_pred             ceec
Q 033350          117 YSYR  120 (121)
Q Consensus       117 ~~~~  120 (121)
                      .||.
T Consensus       911 ~SY~  914 (926)
T 1m2v_B          911 ESYR  914 (926)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            8874

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=99.02  E-value=7.7e-11  Score=104.75  Aligned_cols=63  Identities=17%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhC-CCCCCCC
Q 033350            2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFG-ISLTRFS   73 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFG-v~s~~~i   73 (121)
                      ++||+||++|..        ..|++++||.++|+++|+||||||..++||+|+.++ +|.++.|+ .+..+++
T Consensus       624 ~iyP~L~~~~~~--------~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~~~~~~~~~~~~~~~~  687 (768)
T 1m2o_A          624 MIQPTLTSFSME--------DDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIA-QWRKAGYQDDPQYADF  687 (768)
T ss_dssp             HHSCEEEEECSS--------SCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTGGGSTTCHHH
T ss_pred             hhCCeEEEecCC--------CCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcch-HHHhcccCCCchhhhH
Confidence            689999999962        148899999999999999999999999999999996 79999997 4444433

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=98.93  E-value=3.8e-10  Score=100.37  Aligned_cols=55  Identities=24%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhh
Q 033350            2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLF   65 (121)
Q Consensus         2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlF   65 (121)
                      ++||+||++|..        ..|++++||.++|+++|+||||||..++||+|+.++ +|.+.-|
T Consensus       622 ~iyP~L~~~~~~--------~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~w~~~~~  676 (769)
T 2nut_A          622 MIQPILYAYSFS--------GPPEPVLLDSSSILADRILLMDTFFQILIYHGETIA-QWRKSGY  676 (769)
T ss_dssp             HHSCEEEEECSS--------SSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTT
T ss_pred             hhcCEEEeccCC--------CCCCceeCCHHHccCCCEEEEECCCEEEEEECCcch-HHHhCCC
Confidence            689999999973        148889999999999999999999999999999994 6777533

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1

Probab=97.96  E-value=9.4e-06  Score=55.47  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=39.1

Q ss_pred             cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      ||||.++--     + ...-..++++.++|.++.+|+||+|..+|+|+|+.+++.
T Consensus         3 ~rL~~v~g~-----~-~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~   51 (104)
T 1kcq_A            3 QRLFQVKGR-----R-VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRY   51 (104)
T ss_dssp             CEEEEEEES-----S-SEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHH
T ss_pred             cEEEEEECC-----C-cEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHH
Confidence            788888641     1 122234689999999999999999999999999999964

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=97.87  E-value=1.4e-05  Score=66.40  Aligned_cols=57  Identities=23%  Similarity=0.412  Sum_probs=43.3

Q ss_pred             ecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHh
Q 033350            4 YPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQL   64 (121)
Q Consensus         4 YPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dl   64 (121)
                      .||||.+.+    ..|.+......+++-+.|.++.+||||+|..+|+|+|+.+++.--+..
T Consensus       282 ~~rLf~~s~----~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~A  338 (398)
T 3fg7_A          282 TPRLFECSN----KTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAA  338 (398)
T ss_dssp             CCEEEEEEC----TTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHHH
T ss_pred             cCeeEEEEc----CCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHH
Confidence            688888754    234333333347999999999999999999999999999997643333

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=97.86  E-value=1.5e-05  Score=64.35  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             eecceeecCcCCCCCCCCccCCCc-ccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHH
Q 033350            3 IYPRMMAVHTLFSEEADGSLTTPI-IPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQ   63 (121)
Q Consensus         3 lYPrLy~Lh~l~~~~~~~~~lPp~-l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~d   63 (121)
                      ..||||.+.+    +.|.+..... -+++-+.|.++.+||||+|..+|+|+|+.+++.--+.
T Consensus       227 ~~~rLf~~s~----~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~  284 (344)
T 2fh1_A          227 HPPRLFACSN----KIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE  284 (344)
T ss_dssp             CCCEEEEEEC----TTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHH
T ss_pred             cCCEEEEEEc----CCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH
Confidence            3588888754    2233322222 2789999999999999999999999999999864443

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=97.80  E-value=2.3e-05  Score=64.35  Aligned_cols=58  Identities=22%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             cceeecCcCCCCCCCCccCCCc-ccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhC
Q 033350            5 PRMMAVHTLFSEEADGSLTTPI-IPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFG   66 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~-l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFG   66 (121)
                      ||||.+.+    +.|.+..... -+++-+.|.++.+||||+|..+|+|+|+.+++.--+..+.
T Consensus       270 ~rLf~~s~----~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~  328 (371)
T 3fg6_A          270 PRLYGCSN----KTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK  328 (371)
T ss_dssp             CEEEEEEC----TTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHH
T ss_pred             cEEEEEEc----CCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHH
Confidence            67777643    2233222221 2689999999999999999999999999999876666553

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A

Probab=97.77  E-value=1.7e-05  Score=55.25  Aligned_cols=49  Identities=18%  Similarity=0.408  Sum_probs=38.4

Q ss_pred             cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      ||||.+.--      ....-..++++.++|.++.+|+||+|..+|+|+|+.++..
T Consensus        13 ~rL~~v~G~------~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~   61 (114)
T 1svq_A           13 PRLLHISGD------KNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQ   61 (114)
T ss_dssp             EEEEEEECT------TSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHH
T ss_pred             cEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHH
Confidence            677777621      1112234689999999999999999999999999999964

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=97.74  E-value=2.3e-05  Score=63.12  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             ecceeecCcCCCCCCCCccC---CCcccCccccccCCcEEEEEcC--CEEEEEecCCCCHHHH
Q 033350            4 YPRMMAVHTLFSEEADGSLT---TPIIPLTSEHITEDGIFLLENG--EDALIYIGDRVNSYIL   61 (121)
Q Consensus         4 YPrLy~Lh~l~~~~~~~~~l---Pp~l~LS~e~l~~~GiYLLdnG--~~l~LWvG~~v~p~ll   61 (121)
                      .||||.+.+    ..|.+..   +..-+++.+.|.++.+||||+|  ..+|+|+|+.++++--
T Consensus       247 ~~rLy~vs~----~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er  305 (347)
T 1j72_A          247 AAALYKVSD----ATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKER  305 (347)
T ss_dssp             CCEEEEEEC----TTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHH
T ss_pred             CCEEEEEEC----CCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHH
Confidence            478888754    2233322   2223899999999999999999  9999999999998543

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=97.55  E-value=5.9e-05  Score=66.68  Aligned_cols=53  Identities=15%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             eecceeecCcCCCCCCCCccCCCcc-cCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350            3 IYPRMMAVHTLFSEEADGSLTTPII-PLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus         3 lYPrLy~Lh~l~~~~~~~~~lPp~l-~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      ..||||.+.+    +.|.+...... +.+-+.|.++.+||||+|..+|+|||+.++..
T Consensus       612 ~~~rLf~~s~----~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~  665 (729)
T 1d0n_A          612 HPPRLFACSN----KIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDE  665 (729)
T ss_dssp             SCCEEEEEEC----TTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHH
T ss_pred             cCCeEEEEEc----CCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence            3688998864    23434333334 68999999999999999999999999999875

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=97.20  E-value=0.00016  Score=63.90  Aligned_cols=52  Identities=15%  Similarity=0.394  Sum_probs=37.7

Q ss_pred             cceeecCcCCCCCCCCccCCCc---ccCccccccCCcEEEEEcC-CE-EEEEecCCCCHHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTPI---IPLTSEHITEDGIFLLENG-ED-ALIYIGDRVNSYI   60 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~---l~LS~e~l~~~GiYLLdnG-~~-l~LWvG~~v~p~l   60 (121)
                      ||||.+.+    .+|.+.+...   -+++.+.|+++.+||||+| .. ||+|+|+.++++-
T Consensus       245 ~rLy~vs~----~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~e  301 (729)
T 1d0n_A          245 AKLYKVSN----GAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEE  301 (729)
T ss_dssp             CEEEEEEC----SSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHH
T ss_pred             cEEEEEEC----CCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHH
Confidence            56777653    2233322222   2789999999999999999 43 9999999999743

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=96.69  E-value=0.0016  Score=52.27  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             cccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350           26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus        26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      .++++..+|.++.+|+|++|..+|+|+|+.+++.
T Consensus       151 eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~  184 (347)
T 1j72_A          151 ERALNWDSFNTGDCFILDLGQNIFAWCGGKSNIL  184 (347)
T ss_dssp             EECSSGGGCBTTSEEEEEETTEEEEEECTTCCHH
T ss_pred             EEeeeHHHcCCCceEEEecCCEEEEEECCCCCHH
Confidence            4678899999999999999999999999999964

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=96.53  E-value=0.0023  Score=51.56  Aligned_cols=33  Identities=12%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             ccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350           27 IPLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus        27 l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      ++++..+|.++.+|+|++|..+|+|+|+.+++.
T Consensus       143 V~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~  175 (344)
T 2fh1_A          143 VLPKAGALNSNDAFVLKTPSAAYLWVGTGASEA  175 (344)
T ss_dssp             ECCSGGGCBTTSEEEEECSSCEEEEECTTCCHH
T ss_pred             ecCchhhcCCCceEEEecCCEEEEEECCCCCHH
Confidence            578999999999999999999999999999864

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=96.40  E-value=0.0034  Score=51.41  Aligned_cols=33  Identities=12%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             ccCccccccCCcEEEEEcC-CEEEEEecCCCCHH
Q 033350           27 IPLTSEHITEDGIFLLENG-EDALIYIGDRVNSY   59 (121)
Q Consensus        27 l~LS~e~l~~~GiYLLdnG-~~l~LWvG~~v~p~   59 (121)
                      ++++.++|.++.+|||++| ..+|+|.|+.++..
T Consensus       184 V~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~  217 (371)
T 3fg6_A          184 VDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE  217 (371)
T ss_dssp             ECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH
T ss_pred             ecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH
Confidence            6789999999999999999 99999999999864

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=95.45  E-value=0.0025  Score=52.88  Aligned_cols=34  Identities=12%  Similarity=0.382  Sum_probs=0.0

Q ss_pred             cccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033350           26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY   59 (121)
Q Consensus        26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~   59 (121)
                      .++++..+|.++.+|||++|..+|+|.|+.+++.
T Consensus       196 EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~  229 (398)
T 3fg7_A          196 EVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD  229 (398)
T ss_dssp             ----------------------------------
T ss_pred             EecCCHHHccCCceEEEEeCCeEEEEeCCCCCHH
Confidence            4678999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1pd0a4	173	d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha	6e-11

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (131), Expect = 6e-11
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 5  PRMMAVHTLFSE----------EADGSLTTP-IIPLTSEHITEDGIFLLENGEDALIYIG 53
          P + ++H +  E          EA G++  P  I  TS      G++L++NG +  +++G
Sbjct: 1  PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 60

Query: 54 DRVNSYILDQLFGISLTRFSPQVVFVHGSGPITPMS 89
                ++  +FG       P           +  +
Sbjct: 61 GDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFN 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1pd0a4	173	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2fh1a3	113	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1svya_	102	Severin, domain 2 {Dictyostelium discoideum [TaxId	98.44
d2fh1a2	96	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1j72a3	107	Macrophage capping protein Cap G {Human (Homo sapi	98.13
d1kcqa_	104	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1j72a2	116	Macrophage capping protein Cap G {Human (Homo sapi	98.01
d1d0na3	121	Gelsolin {Horse (Equus caballus) [TaxId: 9796]}	97.94
d2qtva4	142	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	89.9

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-30  Score=191.70  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=97.2

Q ss_pred             cceeecCcCCCC-----------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCC
Q 033350            5 PRMMAVHTLFSE-----------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFS   73 (121)
Q Consensus         5 PrLy~Lh~l~~~-----------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i   73 (121)
                      |+||+||+|.++           .++.+.+|++++||+|+|+++|+||||||+.+|||||++|+|++++++||+++++++
T Consensus         1 P~ly~lH~l~~~~g~~~~~~~~~~~~~~~lP~~l~lS~e~l~~~G~YLld~G~~~~LwvG~~v~p~ll~dlFGv~s~~~l   80 (173)
T d1pd0a4           1 PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDI   80 (173)
T ss_dssp             CEEEECTTCCSSTTSBC--------CCBCCCCCBCSSGGGCCTTCEEEEECSSCEEEEECTTCCHHHHHHHHSCSCGGGS
T ss_pred             CcEEEccCCCcccCCcccccccccCCcccCCCcccchHHHccCCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCCHHHc
Confidence            999999999755           246788999999999999999999999999999999999999999999999999999


Q ss_pred             C--ccccCCCC-CCCCcceeeeeeecCCCC-------------------------------eeEeeecceecccccccee
Q 033350           74 P--QVVFVHGS-GPITPMSVSYSSFDLDGS-------------------------------CLVLTESLHFTDYESEYSY  119 (121)
Q Consensus        74 ~--~~~Lp~~d-n~ls~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~  119 (121)
                      +  +..+|+++ |++|++.+..+...|..+                               +..|...|+||+.+++.||
T Consensus        81 ~~~~~~lp~~~~~~~s~rv~~ii~~lr~~~~~~~~~~l~vvr~~~~~~~~~~~~~~~~~~~e~~f~~~LvED~~~~~~SY  160 (173)
T d1pd0a4          81 PIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESY  160 (173)
T ss_dssp             CCEECCCCCCTTCHHHHHHHHHHHHHTCCSSCCCCCCEEEEECC----------CHHHHHHHHHHHHTCTTSCBTTBCCH
T ss_pred             CcccccCcccCCcHHHHHHHHHHHHHHhhcCCcccceEEEEecCCcccccccccccccchHHHHHHHhccccCCCCCcCH
Confidence            9  78899997 478886655543222211                               1247788999999999998


Q ss_pred             c
Q 033350          120 R  120 (121)
Q Consensus       120 ~  120 (121)
                      .
T Consensus       161 ~  161 (173)
T d1pd0a4         161 R  161 (173)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.3e-08  Score=68.15  Aligned_cols=55  Identities=16%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             cceeecCcCCCCCCCCccCCC-cccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTP-IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQ   63 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp-~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~d   63 (121)
                      ||||.+++-.    |.+.+.. ..+++.+.|.++.+||||+|..+|+|+|+.++...-..
T Consensus        12 prLf~~~~~~----g~~~~~ev~~~~~q~dL~s~dvfILD~g~~ifvW~G~~a~~~er~~   67 (113)
T d2fh1a3          12 PRLFACSNKI----GRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE   67 (113)
T ss_dssp             CEEEEEECTT----SSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHH
T ss_pred             CEEEEEEcCC----CCEEEEEEccCCCHHHCCCCceEEEECCCEEEEEeCCCCCHHHHHH
Confidence            8999997532    2221111 24689999999999999999999999999999876444

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.44  E-value=8.7e-08  Score=63.49  Aligned_cols=50  Identities=18%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYI   60 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~l   60 (121)
                      ||||.++-   .  +. .....++++.+.|.++.+|+||+|..+|+|+|+.+++.-
T Consensus         4 pRL~~v~G---~--~~-~~~~ev~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~e   53 (102)
T d1svya_           4 PRLLHISG---D--KN-AKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE   53 (102)
T ss_dssp             CEEEEEEC---T--TS-CEEEEECSSGGGCBTTSEEEEECSSEEEEEECTTCCHHH
T ss_pred             cEEEEEEC---C--Cc-eEEEEecCCHHHcCCCCeEEEEcCCEEEEEECCCCCHHH
Confidence            89999863   1  11 223346799999999999999999999999999998653

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.9e-07  Score=61.08  Aligned_cols=56  Identities=11%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHh
Q 033350            5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQL   64 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dl   64 (121)
                      ||||.++.-.....   . --.++++.+.|.++++|+||+|..+|+|+|+.+++.--+..
T Consensus         4 ~RLf~v~g~~~~~~---~-~~EV~~~~ssLns~d~fILd~~~~iyvW~G~~s~~~er~~a   59 (96)
T d2fh1a2           4 TRLFQVRANSAGAT---R-AVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGA   59 (96)
T ss_dssp             SEEEEEEECTTCCE---E-EEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHH
T ss_pred             cEEEEEECCCCCeE---E-EEEeCCCHHHhCCCCeEEEECCCEEEEEECCCCCHHHHHHH
Confidence            68998874221111   0 11256889999999999999999999999999998755444

>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-06  Score=57.71  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=40.5

Q ss_pred             cceeecCcCCCCCCCCcc---CCCcccCccccccCCcEEEEEcC--CEEEEEecCCCCHHHHH
Q 033350            5 PRMMAVHTLFSEEADGSL---TTPIIPLTSEHITEDGIFLLENG--EDALIYIGDRVNSYILD   62 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~---lPp~l~LS~e~l~~~GiYLLdnG--~~l~LWvG~~v~p~ll~   62 (121)
                      |+||.+.+-.    |.+.   .+...+++.+.|.++.+|+||+|  ..+|+|+|+++++.--.
T Consensus         8 ~~Ly~vs~~~----G~~~~~~v~~~~p~~~~~L~s~dvfILD~~~~~~iyvW~G~~s~~~ek~   66 (107)
T d1j72a3           8 AALYKVSDAT----GQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQ   66 (107)
T ss_dssp             CEEEEEECTT----SSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHH
T ss_pred             CEEEEEECCC----CCEEEEEEecCCccCHHHCCCCCEEEEeccCCCEEEEEECCCCCHHHHH
Confidence            7888887532    2221   23345689999999999999997  46999999999987643

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.7e-06  Score=56.63  Aligned_cols=36  Identities=22%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             cccCccccccCCcEEEEEcCCEEEEEecCCCCHHHH
Q 033350           26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYIL   61 (121)
Q Consensus        26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll   61 (121)
                      .++++.+.|.++.+|+||+|..+|+|+|+.+++.--
T Consensus        18 eV~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~ek   53 (104)
T d1kcqa_          18 EVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYER   53 (104)
T ss_dssp             EECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHH
T ss_pred             EeCCCHHHcCCCCeEEEEcCCeEEEEECCcCCHHHH
Confidence            357999999999999999999999999999998653

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.8e-06  Score=57.56  Aligned_cols=52  Identities=15%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHH
Q 033350            5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILD   62 (121)
Q Consensus         5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~   62 (121)
                      ||||.+..-     ..+ .-..++++...|.++++|+||+|..+|+|+|+.+++.--.
T Consensus        12 ~rL~~v~G~-----~~~-~~~eV~~~~~sL~s~dvfILd~~~~iyvW~G~~ss~~ek~   63 (116)
T d1j72a2          12 QRLYQVKGK-----KNI-RATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERN   63 (116)
T ss_dssp             EEEEEEECS-----SSC-EEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHH
T ss_pred             cEEEEEECC-----Cce-EEEEeCCCHHHcCCCCEEEEECCCEEEEEECCCCCHHHHH
Confidence            678877531     112 1224689999999999999999999999999999976544

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.94  E-value=3.4e-06  Score=57.44  Aligned_cols=53  Identities=17%  Similarity=0.339  Sum_probs=39.7

Q ss_pred             ecceeecCcCCCCCCCCc---cCCCcccCccccccCCcEEEEEcCC--EEEEEecCCCCHHH
Q 033350            4 YPRMMAVHTLFSEEADGS---LTTPIIPLTSEHITEDGIFLLENGE--DALIYIGDRVNSYI   60 (121)
Q Consensus         4 YPrLy~Lh~l~~~~~~~~---~lPp~l~LS~e~l~~~GiYLLdnG~--~l~LWvG~~v~p~l   60 (121)
                      .+|||.+.+-    +|.+   ..+...+++.+.|.++++||||+|.  .||+|+|+.+++.-
T Consensus         8 ~~rLy~vs~~----~G~~~~~~v~~~~p~~~s~L~s~dvfILD~~~e~~IyvW~G~~ss~~e   65 (121)
T d1d0na3           8 LAKLYKVSNG----AGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEE   65 (121)
T ss_dssp             CCEEEEEECS----SSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHH
T ss_pred             CCEEEEEECC----CCCEEEEEEccCCCcCHHHCCCCCEEEEeeCCCCEEEEEeCCCCCHHH
Confidence            3788888642    2221   1234457899999999999999975  59999999999864

>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.90  E-value=0.074  Score=37.22  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             CCcccCccccccCCcEEEEEcCCEEEEEecCCCCH
Q 033350           24 TPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNS   58 (121)
Q Consensus        24 Pp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p   58 (121)
                      |.++.|...+|.++-|-|||++-++++|-|..|-.
T Consensus        12 p~pVlLDs~Si~~D~ILLLDtfF~V~I~~G~~Ia~   46 (142)
T d2qtva4          12 PQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQ   46 (142)
T ss_dssp             CEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHH
T ss_pred             CceeecchhhcCCCeEEEEcCCCEEEEEeCcHHHH
Confidence            77899999999999999999999999999977743