BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033353
MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT
PTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEESDEDMGFSLF
D

High Scoring Gene Products

Symbol, full name Information P value
AT4G25890 protein from Arabidopsis thaliana 1.8e-23
AT5G57290 protein from Arabidopsis thaliana 2.9e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033353
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117562 - symbol:AT4G25890 species:3702 "Arabi...   270  1.8e-23   1
TAIR|locus:2165620 - symbol:AT5G57290 species:3702 "Arabi...   268  2.9e-23   1


>TAIR|locus:2117562 [details] [associations]
            symbol:AT4G25890 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006414 "translational elongation"
            evidence=IEA;ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] InterPro:IPR001813 Pfam:PF00428 GO:GO:0005886
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
            EMBL:AL049480 GO:GO:0003735 GO:GO:0022626 GO:GO:0006414
            UniGene:At.28428 KO:K02942 HAMAP:MF_01478 EMBL:AY070030
            EMBL:AY091219 IPI:IPI00525999 PIR:T04243 RefSeq:NP_194319.1
            STRING:Q9SVZ6 PaxDb:Q9SVZ6 PRIDE:Q9SVZ6 ProMEX:Q9SVZ6
            EnsemblPlants:AT4G25890.1 GeneID:828695 KEGG:ath:AT4G25890
            TAIR:At4g25890 eggNOG:NOG283040 HOGENOM:HOG000064577
            InParanoid:Q9SVZ6 OMA:AKQHEGE PhylomeDB:Q9SVZ6
            ProtClustDB:CLSN2685875 Genevestigator:Q9SVZ6 GermOnline:AT4G25890
            Uniprot:Q9SVZ6
        Length = 119

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/68 (80%), Positives = 61/68 (89%)

Query:     1 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
             MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+
Sbjct:     1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVS 59

Query:    61 PTSAVFQV 68
             PTSAVFQV
Sbjct:    60 PTSAVFQV 67


>TAIR|locus:2165620 [details] [associations]
            symbol:AT5G57290 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006414 "translational elongation"
            evidence=IEA;ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR001813 Pfam:PF00428 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003735 GO:GO:0022626
            EMBL:AB019233 GO:GO:0006414 KO:K02942 HAMAP:MF_01478
            HOGENOM:HOG000064577 ProtClustDB:CLSN2685875 EMBL:BT025594
            EMBL:AY088631 IPI:IPI00535269 RefSeq:NP_200539.1 UniGene:At.20208
            UniGene:At.68067 STRING:Q9LVC9 PaxDb:Q9LVC9 PRIDE:Q9LVC9
            EnsemblPlants:AT5G57290.1 GeneID:835834 KEGG:ath:AT5G57290
            TAIR:At5g57290 eggNOG:NOG329359 InParanoid:Q9LVC9 OMA:QRKLVQT
            PhylomeDB:Q9LVC9 Genevestigator:Q9LVC9 GermOnline:AT5G57290
            Uniprot:Q9LVC9
        Length = 120

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query:     1 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
             MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+
Sbjct:     1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVS 59

Query:    61 PTSAVFQV 68
             PTSAVF V
Sbjct:    60 PTSAVFVV 67


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121        79   0.00091  102 3  11 23  0.44    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  90 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.70u 0.19s 8.89t   Elapsed:  00:00:01
  Total cpu time:  8.70u 0.19s 8.89t   Elapsed:  00:00:01
  Start:  Sat May 11 00:14:56 2013   End:  Sat May 11 00:14:57 2013

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