BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033353
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
 pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
          Length = 377

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 19  QIEGGDLEASAASTYELQRKLVQT---SLSADSSGGVQSSFSLVTPTSAV 65
           +IEG  +  SA STY +Q +   T   SL  +   GVQ    L  P S V
Sbjct: 324 RIEGNTISGSANSTYGIQERNDGTDYSSLIDNDIAGVQQPIQLYGPHSTV 373


>pdb|3HR6|A Chain A, Structure Of The Corynebacterium Diphtheriae Major Pilin
           Spaa Points To A Modular Pilus Assembly Stabilizing
           Isopeptide Bonds
          Length = 436

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 15  WSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGV 52
           W+GK  E   +E + AS YEL  K V   L A+ S  V
Sbjct: 385 WAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNV 422


>pdb|3HTL|X Chain X, Structure Of The Corynebacterium Diphtheriae Major Pilin
           Spaa Points To A Modular Pilus Assembly With Stabilizing
           Isopeptide Bonds
          Length = 436

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 15  WSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGV 52
           W+GK  E   +E + AS YEL  K V   L A+ S  V
Sbjct: 385 WAGKGTEFCLVETATASGYELLPKPVIVKLEANESTNV 422


>pdb|3IZR|TT Chain t, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
 pdb|3IZR|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 110

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 111 SDEDMGFSLFD 121
           SD+DMGFSLFD
Sbjct: 100 SDDDMGFSLFD 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,158,700
Number of Sequences: 62578
Number of extensions: 52321
Number of successful extensions: 126
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)