BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033353
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3
          Length = 120

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 1   MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
           MGV+T+VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VT
Sbjct: 1   MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVT 59

Query: 61  PTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEESDEDMGFSLF 120
           P+SAVFQVI+G   G   +  G      +  GGAAAEAP  E+K+EEKEESD+DMGFSLF
Sbjct: 60  PSSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLF 119

Query: 121 D 121
           D
Sbjct: 120 D 120


>sp|Q9LVC9|RLA32_ARATH 60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana
          GN=RPP3B PE=1 SV=1
          Length = 120

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 1  MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
          MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVS 59

Query: 61 PTSAVFQVII 70
          PTSAVF V+I
Sbjct: 60 PTSAVFVVVI 69


>sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana
          GN=RPP3A PE=1 SV=1
          Length = 119

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 63/70 (90%), Gaps = 1/70 (1%)

Query: 1  MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
          MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+
Sbjct: 1  MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVS 59

Query: 61 PTSAVFQVII 70
          PTSAVFQVI+
Sbjct: 60 PTSAVFQVIV 69


>sp|P56724|RLA3_ORYSJ 60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica
           GN=Os06g0701400 PE=3 SV=3
          Length = 119

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 93/121 (76%), Gaps = 2/121 (1%)

Query: 1   MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVT 60
           MGV+T+VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVS 59

Query: 61  PTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEESDEDMGFSLF 120
           P+SAVFQVIIG   G   IGGGAAA A SGG  A A     ++++E++E  D D+GFSLF
Sbjct: 60  PSSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEESED-DLGFSLF 118

Query: 121 D 121
           D
Sbjct: 119 D 119


>sp|P90703|RLA2_BRUMA 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1
          Length = 114

 Score = 32.7 bits (73), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 102 EEKKEEKEESDEDMGFSLFD 121
           E K+  KEESDEDMGF LFD
Sbjct: 95  ETKEGPKEESDEDMGFGLFD 114


>sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1
          Length = 110

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 1/22 (4%)

Query: 101 AEEKKEEK-EESDEDMGFSLFD 121
           AE+K  EK EESD+DMGF LFD
Sbjct: 89  AEDKPAEKDEESDDDMGFGLFD 110


>sp|Q9PV90|RLA0_DANRE 60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1
          Length = 319

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 107 EKEESDEDMGFSLFD 121
           + EESDEDMGF LFD
Sbjct: 305 DSEESDEDMGFGLFD 319


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.127    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,669,609
Number of Sequences: 539616
Number of extensions: 1962375
Number of successful extensions: 26706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 22728
Number of HSP's gapped (non-prelim): 3144
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)