Query 033353
Match_columns 121
No_of_seqs 141 out of 266
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_t 60S acidic ribosomal pr 99.9 8.4E-24 2.9E-28 152.7 0.1 88 32-121 23-110 (110)
2 3izc_t 60S acidic ribosomal pr 99.8 7.7E-23 2.6E-27 146.7 -0.2 85 32-121 22-106 (106)
3 3iz5_v 60S acidic ribosomal pr 99.8 2.5E-22 8.6E-27 145.6 -0.6 83 36-121 23-113 (113)
4 3izc_v 60S acidic ribosomal pr 99.8 5.2E-21 1.8E-25 137.2 -0.4 77 37-121 23-106 (106)
5 3iz5_s 60S acidic ribosomal pr 98.8 8.9E-10 3.1E-14 90.6 0.0 54 63-121 266-319 (319)
6 3u5i_q A0, L10E, 60S acidic ri 98.6 3.1E-09 1.1E-13 87.2 0.0 22 100-121 291-312 (312)
7 2lbf_A 60S acidic ribosomal pr 98.5 4.3E-08 1.5E-12 65.2 2.2 44 32-76 24-67 (69)
8 2zkr_g 60S acidic ribosomal pr 98.5 4.1E-10 1.4E-14 92.6 -9.5 57 61-121 261-317 (317)
9 3a1y_A 50S ribosomal protein P 97.5 1E-05 3.6E-10 51.9 -0.9 38 33-71 19-56 (58)
10 2lbf_B 60S acidic ribosomal pr 97.3 5.4E-05 1.8E-09 50.4 0.9 39 34-73 22-60 (70)
11 3izc_v 60S acidic ribosomal pr 89.8 0.061 2.1E-06 38.0 0.0 17 96-113 85-101 (106)
12 3iz5_t 60S acidic ribosomal pr 87.6 0.11 3.6E-06 37.0 0.0 18 96-113 88-105 (110)
13 3izc_t 60S acidic ribosomal pr 86.2 0.14 4.8E-06 36.1 0.0 18 96-113 84-101 (106)
14 3iz5_v 60S acidic ribosomal pr 84.6 0.19 6.4E-06 35.9 0.0 18 96-113 91-108 (113)
15 4did_B Inositol phosphate phos 77.6 2.2 7.5E-05 32.0 3.7 40 5-45 20-60 (152)
16 3iz5_s 60S acidic ribosomal pr 67.0 1.2 4E-05 36.4 0.0 13 100-112 301-313 (319)
17 3u5i_q A0, L10E, 60S acidic ri 53.3 2.8 9.6E-05 34.0 0.0 12 63-74 261-272 (312)
18 2gxf_A Hypothetical protein YY 49.7 7.7 0.00026 25.9 1.8 15 2-16 100-115 (142)
19 4eef_G F-HB80.4, designed hema 41.5 7 0.00024 26.1 0.5 31 39-70 30-63 (74)
20 3h51_A Putative calcium/calmod 37.0 12 0.00043 25.3 1.2 20 2-21 117-136 (156)
21 2l73_A NADPH oxidase organizer 33.1 36 0.0012 24.3 3.2 34 3-44 28-62 (149)
22 3cu3_A Domain of unknown funct 27.8 51 0.0017 22.5 3.2 44 2-45 115-167 (172)
23 3gwr_A Putative calcium/calmod 23.2 37 0.0013 23.3 1.7 19 2-20 105-123 (144)
24 1kq6_A NCF-1, P47PHOX, neutrop 22.4 77 0.0026 21.8 3.3 33 3-43 25-58 (141)
25 2vqc_A Hypothetical 13.2 kDa p 22.0 27 0.00091 24.7 0.8 21 24-44 38-58 (118)
26 1z0k_B FYVE-finger-containing 21.2 76 0.0026 20.7 2.8 27 15-43 9-35 (69)
No 1
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.87 E-value=8.4e-24 Score=152.66 Aligned_cols=88 Identities=38% Similarity=0.460 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhhccCCcchhhhhhccCCCcceeeeeeccCCCCCccCCCCCCCCCCCCCCCCCCCchhhhhccccccc
Q 033353 32 TYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEES 111 (121)
Q Consensus 32 ~~~lq~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~g~g~g~~~~gggaAa~aaagg~~aaa~~~k~EekkEE~EEs 111 (121)
|-+=-++|++++. ++|+++|+.+|++.|+++||.+||.++++|+++++.++++++ +++++++++++++|+|+||+|||
T Consensus 23 tad~I~~ilkAaG-veVe~~~~~lfakaL~gknI~eLI~sv~~gg~a~~a~a~~a~-~~~~~~~a~~~~~e~k~ee~EEs 100 (110)
T 3iz5_t 23 TSEKIATVVKAAG-IKVEAYWPALFAKLLEKRSVDDLILSVGSGGGGAPAAAAAAP-AAGGAAAAEEKKEEKKEEAKEES 100 (110)
T ss_dssp SHHHHHHHHHHHT-CCCCSHHHHHHHHHHTTCCHHHHHTCCC--------------------------------------
T ss_pred ChHHHHHHHHHhC-CcccHHHHHHHHHHcCCCCHHHHHhcCCCccccccccccccc-cccccccccchhhhhcccccccc
Confidence 3344567777775 999999999999999999999999988776543221111111 11111122333445555677899
Q ss_pred ccccCcCCCC
Q 033353 112 DEDMGFSLFD 121 (121)
Q Consensus 112 ddDmGF~LFD 121 (121)
||||||+|||
T Consensus 101 ddDmGfgLFd 110 (110)
T 3iz5_t 101 DDDMGFSLFD 110 (110)
T ss_dssp ----------
T ss_pred ccccccccCC
Confidence 9999999998
No 2
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.84 E-value=7.7e-23 Score=146.73 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhhccCCcchhhhhhccCCCcceeeeeeccCCCCCccCCCCCCCCCCCCCCCCCCCchhhhhccccccc
Q 033353 32 TYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEES 111 (121)
Q Consensus 32 ~~~lq~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~g~g~g~~~~gggaAa~aaagg~~aaa~~~k~EekkEE~EEs 111 (121)
|-+=-++|++++. ++|+++|+.+|++.|+++||.+||.+.++|+++++ ++++++++ +++++++++++|+|++|||
T Consensus 22 tad~I~~ilkAaG-veVe~~~~~lfa~aL~gknI~eLI~~~~ag~~~~a---a~a~~a~~-~~~a~~~~~~~kee~~EEs 96 (106)
T 3izc_t 22 SSEKLLTLTNAAN-VPDENIWADIFAKALDGQNLKDLLVNFSAGAAAPA---GVAGGVAG-GEAGEAEAEKEEEEAKEES 96 (106)
T ss_dssp SHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHTTCCC--------------------------------------
T ss_pred CHHHHHHHHHHcC-CcccHHHHHHHHHHhcCCCHHHHHHhccCcCcccc---cccccccc-cccccchhhhhhccccccc
Confidence 3444567777775 99999999999999999999999999877544321 11111111 1122233334455666899
Q ss_pred ccccCcCCCC
Q 033353 112 DEDMGFSLFD 121 (121)
Q Consensus 112 ddDmGF~LFD 121 (121)
||||||+|||
T Consensus 97 ddDmGfgLFd 106 (106)
T 3izc_t 97 DDDMGFGLFD 106 (106)
T ss_dssp ----------
T ss_pred ccccccCcCC
Confidence 9999999998
No 3
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.83 E-value=2.5e-22 Score=145.61 Aligned_cols=83 Identities=34% Similarity=0.448 Sum_probs=29.8
Q ss_pred HHHHHHHhhhccCCcchhhhhhccCCCcceeeeee-------ccCCCCCccCCCCCCCCCCCCCCCC-CCCchhhhhccc
Q 033353 36 QRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVII-------GGAVGSGFIGGGAAASAPSGGGGAA-AEAPAAEEKKEE 107 (121)
Q Consensus 36 q~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~-------g~g~g~~~~gggaAa~aaagg~~aa-a~~~k~EekkEE 107 (121)
-++|++++. ++|+++|+.+|++.|+++||.+||. ++++|++++..++ + +++++++++ ++++++|+||||
T Consensus 23 I~~ILkAaG-veVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a-~-a~a~~~~a~~a~~~~~e~k~ee 99 (113)
T 3iz5_v 23 LTSILESVG-CEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSA-A-APAAGGAAAPAAESKKEEKVVE 99 (113)
T ss_dssp HHHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHHHSCC------------------------------------------
T ss_pred HHHHHHHcC-CCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCccccccccc-c-cccccccccccchhhhhhhccc
Confidence 356677665 9999999999999999999999994 4444433221111 1 111221122 234455666677
Q ss_pred ccccccccCcCCCC
Q 033353 108 KEESDEDMGFSLFD 121 (121)
Q Consensus 108 ~EEsddDmGF~LFD 121 (121)
+|||||||||+|||
T Consensus 100 ~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 100 KEESDDDMGFSLFD 113 (113)
T ss_dssp --------------
T ss_pred ccccccccccCcCC
Confidence 78999999999998
No 4
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.79 E-value=5.2e-21 Score=137.20 Aligned_cols=77 Identities=26% Similarity=0.330 Sum_probs=29.6
Q ss_pred HHHHHHhhhccCCcchhhhhhccCCCcceeeeee-------ccCCCCCccCCCCCCCCCCCCCCCCCCCchhhhhccccc
Q 033353 37 RKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVII-------GGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKE 109 (121)
Q Consensus 37 ~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~-------g~g~g~~~~gggaAa~aaagg~~aaa~~~k~EekkEE~E 109 (121)
++|++++. ++|+++|+.+|++.|+++||.+||. ++++|++++ +++++++ + + ++++++|+|+|++|
T Consensus 23 ~~ilkAaG-veVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~---aa~a~~a-~--~-~~~~~~e~kee~~E 94 (106)
T 3izc_v 23 KAILESVG-IEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPAS---AGGAAAA-S--G-DAAAEEEKEEEAAE 94 (106)
T ss_dssp HHHHHHHT-CCCCHHHHHHHHHHHTTCCHHHHHHSCC-------------------------------------------
T ss_pred HHHHHHcC-CCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccc---ccccccc-c--c-cccccccccccccc
Confidence 56676665 9999999999999999999999997 333332211 1111111 1 1 22334455556678
Q ss_pred ccccccCcCCCC
Q 033353 110 ESDEDMGFSLFD 121 (121)
Q Consensus 110 EsddDmGF~LFD 121 (121)
||||||||+|||
T Consensus 95 EsdddmGfgLFd 106 (106)
T 3izc_v 95 ESDDDMGFGLFD 106 (106)
T ss_dssp ------------
T ss_pred ccccccCCCCCC
Confidence 999999999998
No 5
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.76 E-value=8.9e-10 Score=90.65 Aligned_cols=54 Identities=33% Similarity=0.361 Sum_probs=0.0
Q ss_pred cceeeeeeccCCCCCccCCCCCCCCCCCCCCCCCCCchhhhhcccccccccccCcCCCC
Q 033353 63 SAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEESDEDMGFSLFD 121 (121)
Q Consensus 63 k~V~~~i~g~g~g~~~~gggaAa~aaagg~~aaa~~~k~EekkEE~EEsddDmGF~LFD 121 (121)
..|++.|.+-+..++++. ++++++++ ++++++++++++||+|||||||||+|||
T Consensus 266 e~ik~~l~~p~~~a~aa~-~a~~~~~~----~~~~~~~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 266 DKIKEYLKDPSKFAVAAP-VAADSGAA----APSAAKEEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp -----------------------------------------------------------
T ss_pred hhHHHHHhhhhhhccccc-cccccccc----cccccccccccccccccccccCCCCCCC
Confidence 568888887554322211 11111100 1112233344555667899999999998
No 6
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.64 E-value=3.1e-09 Score=87.17 Aligned_cols=22 Identities=68% Similarity=1.046 Sum_probs=0.0
Q ss_pred hhhhhcccccccccccCcCCCC
Q 033353 100 AAEEKKEEKEESDEDMGFSLFD 121 (121)
Q Consensus 100 k~EekkEE~EEsddDmGF~LFD 121 (121)
++++++||+|||||||||+|||
T Consensus 291 ~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 291 AEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp ----------------------
T ss_pred cccccccccccccccCCCCCCC
Confidence 3344555667899999999998
No 7
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=98.49 E-value=4.3e-08 Score=65.24 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhhhccCCcchhhhhhccCCCcceeeeeeccCCCC
Q 033353 32 TYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGGAVGS 76 (121)
Q Consensus 32 ~~~lq~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~g~g~g~ 76 (121)
|-+=-++++++|. ++|+++|+.+|++.|+++||.++|.+.|+|+
T Consensus 24 ta~~I~~il~AaG-veve~~~~~lf~~aL~gk~I~elI~~~g~g~ 67 (69)
T 2lbf_A 24 TEDKINALIKAAG-VNVEPFWPGLFAKALANVNIGSLICNVGAGG 67 (69)
T ss_dssp CHHHHHHHHHHHT-CCCCTHHHHHHHHHTTTSCGGGGGTTTTCCC
T ss_pred CHHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHhccCCC
Confidence 3444567777776 9999999999999999999999999887654
No 8
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.48 E-value=4.1e-10 Score=92.59 Aligned_cols=57 Identities=42% Similarity=0.483 Sum_probs=21.5
Q ss_pred CCcceeeeeeccCCCCCccCCCCCCCCCCCCCCCCCCCchhhhhcccccccccccCcCCCC
Q 033353 61 PTSAVFQVIIGGAVGSGFIGGGAAASAPSGGGGAAAEAPAAEEKKEEKEESDEDMGFSLFD 121 (121)
Q Consensus 61 ~~k~V~~~i~g~g~g~~~~gggaAa~aaagg~~aaa~~~k~EekkEE~EEsddDmGF~LFD 121 (121)
+.++|+++|.+.+.+++++ |+++++++++++++++++++++||+|||||||||+|||
T Consensus 261 ea~~vk~~l~~~~~~~~a~----a~~a~~~~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 261 LAEKVKAFLADPSAFVAAA----PVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp CHHHHHTTTHHHHHHHHHH----HHHTTSSHHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred hhhhHHHHHhccCcccccc----ccccccccccccccccccccccCCccccccccCcCCCC
Confidence 3567788887665432211 11111111001112233444556667899999999998
No 9
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=97.48 E-value=1e-05 Score=51.90 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhccCCcchhhhhhccCCCcceeeeeec
Q 033353 33 YELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIG 71 (121)
Q Consensus 33 ~~lq~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~g 71 (121)
-+=-++++++|. ++|+++|+.+|++.|+++||.++|.+
T Consensus 19 ~~~I~~il~aaG-veve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 19 EENLKAVLQAAG-VEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHcC-CCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 344466777666 99999999999999999999999865
No 10
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=97.30 E-value=5.4e-05 Score=50.44 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhccCCcchhhhhhccCCCcceeeeeeccC
Q 033353 34 ELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGGA 73 (121)
Q Consensus 34 ~lq~~lv~~a~~~eVe~~w~slFA~~L~~k~V~~~i~g~g 73 (121)
+=-++++++|. ++|+++|+.+|++.|++|||.+||.++-
T Consensus 22 ~~I~~il~aaG-vevd~~~~~~~~~aL~gk~i~elIa~g~ 60 (70)
T 2lbf_B 22 KDIKKILDSVG-IEADDDRLNKVISELNGKNIEDVIAQGI 60 (70)
T ss_dssp HHHHHHHHTTT-CCCCTTHHHHHHHHHSSCCHHHHHTTCS
T ss_pred HHHHHHHHHcC-CCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33456677665 9999999999999999999999997643
No 11
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=89.83 E-value=0.061 Score=38.02 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCCchhhhhccccccccc
Q 033353 96 AEAPAAEEKKEEKEESDE 113 (121)
Q Consensus 96 a~~~k~EekkEE~EEsdd 113 (121)
++++| |+++||++++..
T Consensus 85 ~~e~k-ee~~EEsdddmG 101 (106)
T 3izc_v 85 EEEKE-EEAAEESDDDMG 101 (106)
T ss_dssp ------------------
T ss_pred ccccc-cccccccccccC
Confidence 34444 445566676543
No 12
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=87.59 E-value=0.11 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCCchhhhhccccccccc
Q 033353 96 AEAPAAEEKKEEKEESDE 113 (121)
Q Consensus 96 a~~~k~EekkEE~EEsdd 113 (121)
++++++++++||++++..
T Consensus 88 ~~~e~k~ee~EEsddDmG 105 (110)
T 3iz5_t 88 KKEEKKEEAKEESDDDMG 105 (110)
T ss_dssp ------------------
T ss_pred hhhhhccccccccccccc
Confidence 333444556667776654
No 13
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=86.17 E-value=0.14 Score=36.10 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCchhhhhccccccccc
Q 033353 96 AEAPAAEEKKEEKEESDE 113 (121)
Q Consensus 96 a~~~k~EekkEE~EEsdd 113 (121)
++++++|+++||++++..
T Consensus 84 ~~~~~kee~~EEsddDmG 101 (106)
T 3izc_t 84 EAEKEEEEAKEESDDDMG 101 (106)
T ss_dssp ------------------
T ss_pred hhhhhhcccccccccccc
Confidence 444455566677776653
No 14
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=84.59 E-value=0.19 Score=35.93 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCchhhhhccccccccc
Q 033353 96 AEAPAAEEKKEEKEESDE 113 (121)
Q Consensus 96 a~~~k~EekkEE~EEsdd 113 (121)
...+++++++||++++..
T Consensus 91 ~~~e~k~ee~EEsDdDmG 108 (113)
T 3iz5_v 91 SKKEEKVVEKEESDDDMG 108 (113)
T ss_dssp ------------------
T ss_pred hhhhhhcccccccccccc
Confidence 333333445556676553
No 15
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=77.64 E-value=2.2 Score=32.04 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=28.0
Q ss_pred EEEEecCCCcccce-eccCCcccccccchHHHHHHHHHHhhh
Q 033353 5 TYVCRKNGGEWSGK-QIEGGDLEASAASTYELQRKLVQTSLS 45 (121)
Q Consensus 5 ~fv~~~~g~~w~~k-~~~~~~~~~~~~~~~~lq~~lv~~a~~ 45 (121)
+||+|++|..|.-- |+. ---.-|--+-|+|||-|+..|..
T Consensus 20 i~~l~~~~~~~~~~~q~~-~~s~~sih~~y~~qr~li~~aa~ 60 (152)
T 4did_B 20 IIVLREPGATWGNYLQHQ-KASNHSLHNLYNLQRDLLTVAAT 60 (152)
T ss_dssp EEEECCSSCCGGGGCCCC-CCSSSBHHHHHHHHHHHHHHHHH
T ss_pred eeEecCCcchhhhhhccc-cccchhHHHHHHHHHHHHHHHHH
Confidence 69999999999642 322 11123446689999999997763
No 16
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=66.98 E-value=1.2 Score=36.43 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhcccccccc
Q 033353 100 AAEEKKEEKEESD 112 (121)
Q Consensus 100 k~EekkEE~EEsd 112 (121)
++++++||++++.
T Consensus 301 ~~~e~~ee~d~d~ 313 (319)
T 3iz5_s 301 KKEEPEEESDGDL 313 (319)
T ss_dssp -------------
T ss_pred ccccccccccccC
Confidence 3344444555443
No 17
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=53.32 E-value=2.8 Score=34.04 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=0.0
Q ss_pred cceeeeeeccCC
Q 033353 63 SAVFQVIIGGAV 74 (121)
Q Consensus 63 k~V~~~i~g~g~ 74 (121)
..|++.+.+-+.
T Consensus 261 ~~ik~~la~p~a 272 (312)
T 3u5i_q 261 EDLVDRIENPEK 272 (312)
T ss_dssp ------------
T ss_pred hhHHHHHhChhh
Confidence 457777776554
No 18
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=49.74 E-value=7.7 Score=25.90 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=12.5
Q ss_pred ceEEEEEec-CCCccc
Q 033353 2 GVFTYVCRK-NGGEWS 16 (121)
Q Consensus 2 ~v~~fv~~~-~g~~w~ 16 (121)
++||+|+|+ .+|+|-
T Consensus 100 g~~t~v~~r~~dG~Wr 115 (142)
T 2gxf_A 100 RRATYVFKKNAQGEWL 115 (142)
T ss_dssp EEEEEEEEECTTSCEE
T ss_pred EEEEEEEEECCCCCEE
Confidence 579999988 688994
No 19
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=41.46 E-value=7 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=20.3
Q ss_pred HHHHhhhc---cCCcchhhhhhccCCCcceeeeee
Q 033353 39 LVQTSLSA---DSSGGVQSSFSLVTPTSAVFQVII 70 (121)
Q Consensus 39 lv~~a~~~---eVe~~w~slFA~~L~~k~V~~~i~ 70 (121)
+...|+.. +...-| ..+|..+|+|.+.+|+-
T Consensus 30 ~FE~ALa~yp~~tpdRW-ekIA~~VpGKT~eEVk~ 63 (74)
T 4eef_G 30 AFEIALSFTNKDTPDRW-KKVAQYVKGRTPEEVKK 63 (74)
T ss_dssp HHHHHTSSSCSSCCSSS-TTTGGGSCSSCHHHHHG
T ss_pred HHHHHHHHCCCCCCcHH-HHHHHHcCCCCHHHHHH
Confidence 44555522 334456 57888899999988864
No 20
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=36.96 E-value=12 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.5
Q ss_pred ceEEEEEecCCCcccceecc
Q 033353 2 GVFTYVCRKNGGEWSGKQIE 21 (121)
Q Consensus 2 ~v~~fv~~~~g~~w~~k~~~ 21 (121)
+.||+|.|+.+|.|---.+-
T Consensus 117 ~r~t~v~~r~dG~WkIv~~H 136 (156)
T 3h51_A 117 ARYTFVYEKRDGKWLIINHH 136 (156)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEEEECCEEEEEEEe
Confidence 56899999999999554443
No 21
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=33.09 E-value=36 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=23.5
Q ss_pred eEEEEEe-cCCCcccceeccCCcccccccchHHHHHHHHHHhh
Q 033353 3 VFTYVCR-KNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSL 44 (121)
Q Consensus 3 v~~fv~~-~~g~~w~~k~~~~~~~~~~~~~~~~lq~~lv~~a~ 44 (121)
+|.+.++ +++.+|+-..+ =...|+||++|.+.--
T Consensus 28 ~Y~I~V~~~d~~~~~V~RR--------YseF~~Lh~~L~~~FP 62 (149)
T 2l73_A 28 TFAFSVRWSDGSDTFVRRS--------WDEFRQLKKTLKETFP 62 (149)
T ss_dssp EEEEEEEETTSCEEEEEEE--------HHHHHHHHHHHHHHCG
T ss_pred EEEEEEEEeCCCEEEEEEe--------hHHHHHHHHHHHHHCc
Confidence 4777666 55666755443 3578999999998753
No 22
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=27.81 E-value=51 Score=22.50 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=27.9
Q ss_pred ceEEEEEecCCCcccceeccCCcccccc---------cchHHHHHHHHHHhhh
Q 033353 2 GVFTYVCRKNGGEWSGKQIEGGDLEASA---------ASTYELQRKLVQTSLS 45 (121)
Q Consensus 2 ~v~~fv~~~~g~~w~~k~~~~~~~~~~~---------~~~~~lq~~lv~~a~~ 45 (121)
+.||+|+++.+|.|--..+..--+.... .-+.+.|++|-+.+.+
T Consensus 115 ~~~t~v~~r~dG~WrI~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (172)
T 3cu3_A 115 SLPLYVVTKGDEGWQIEGLLNTRKLTLERQFFLDDFDSLSAEAQRQVTDLVAS 167 (172)
T ss_dssp BCCEEEEEEETTEEEEEEEECCBCCCHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeCCeEEEEEEEcCccccccccccccCCccccHHHHHHHHHHHHH
Confidence 4689999999999976666422221111 1257788887776654
No 23
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=23.17 E-value=37 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=14.4
Q ss_pred ceEEEEEecCCCcccceec
Q 033353 2 GVFTYVCRKNGGEWSGKQI 20 (121)
Q Consensus 2 ~v~~fv~~~~g~~w~~k~~ 20 (121)
..+|+|.|+.+|.|.=-.|
T Consensus 105 ~r~T~V~~r~~g~Wrivhh 123 (144)
T 3gwr_A 105 ILATNVYRREADGWRMVLH 123 (144)
T ss_dssp EEEEEEEEECSSSEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEE
Confidence 3689999999999943333
No 24
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=22.37 E-value=77 Score=21.78 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=22.4
Q ss_pred eEEEEEe-cCCCcccceeccCCcccccccchHHHHHHHHHHh
Q 033353 3 VFTYVCR-KNGGEWSGKQIEGGDLEASAASTYELQRKLVQTS 43 (121)
Q Consensus 3 v~~fv~~-~~g~~w~~k~~~~~~~~~~~~~~~~lq~~lv~~a 43 (121)
||++.++ +++..|+-..+= ...++|+++|++.-
T Consensus 25 ~Y~I~V~~~~~~~~~V~RRY--------sdF~~Lh~~L~~~f 58 (141)
T 1kq6_A 25 VYMFLVKWQDLSEKVVYRRF--------TEIYEFHKTLKEMF 58 (141)
T ss_dssp EEEEEEEETTCCEEEEEECH--------HHHHHHHHHHHHHC
T ss_pred EEEEEEEEcCCCEEEEEecH--------HHHHHHHHHHHHHC
Confidence 4666666 445578655543 46789999999854
No 25
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=22.00 E-value=27 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.6
Q ss_pred cccccccchHHHHHHHHHHhh
Q 033353 24 DLEASAASTYELQRKLVQTSL 44 (121)
Q Consensus 24 ~~~~~~~~~~~lq~~lv~~a~ 44 (121)
.+|-|+.+.|.+||+|.--+-
T Consensus 38 qfeis~~sayniqr~l~~ice 58 (118)
T 2vqc_A 38 QFEISVPSAYNIQRALKAICE 58 (118)
T ss_dssp HHCCCHHHHHHHHHHHHHHHH
T ss_pred HheeccchHhHHHHHHHHHHh
Confidence 467899999999999887665
No 26
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.23 E-value=76 Score=20.69 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=19.0
Q ss_pred ccceeccCCcccccccchHHHHHHHHHHh
Q 033353 15 WSGKQIEGGDLEASAASTYELQRKLVQTS 43 (121)
Q Consensus 15 w~~k~~~~~~~~~~~~~~~~lq~~lv~~a 43 (121)
|++.+..-.- .+...+..-|+-+|+.-
T Consensus 9 W~~~~~~~~~--~~~~dPL~EQ~~~I~~y 35 (69)
T 1z0k_B 9 WLPLSGGQGQ--SEDSDPLLQQIHNITSF 35 (69)
T ss_dssp BCCCSSTTCS--CCCSSHHHHHHHHHHHH
T ss_pred CCcccccccc--cccCCcHHHHHHHHHHH
Confidence 9999886222 34557998898887653
Done!