BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033355
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
pdb|3IZR|WW Chain w, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 113
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 51/62 (82%)
Query: 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
MK +AAYLLA L GN SPSA+D+ IL SVG + ++ ++EL+LS+VKGKDITEL+A+GRE
Sbjct: 1 MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGRE 60
Query: 61 KL 62
K
Sbjct: 61 KF 62
>pdb|2W1O|A Chain A, Nmr Structure Of Dimerization Domain Of Human Ribosomal
Protein P2
pdb|2W1O|B Chain B, Nmr Structure Of Dimerization Domain Of Human Ribosomal
Protein P2
pdb|2LBF|B Chain B, Solution Structure Of The Dimerization Domain Of Human
Ribosomal Protein P1P2 HETERODIMER
Length = 70
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
M+ VA+YLLA LGGN+SPSA DIK IL SVG + +D+RL ++SE+ GK+I ++IA G
Sbjct: 2 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 61
Query: 61 KL 62
KL
Sbjct: 62 KL 63
>pdb|3IZS|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3IZS|WW Chain w, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 106
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
MK +AAYLL GNT P A IK IL SVG + ED ++ +LS ++GK + ELI G E
Sbjct: 1 MKYLAAYLLLNAAGNT-PDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNE 59
Query: 61 KL 62
KL
Sbjct: 60 KL 61
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGRE 60
M+VVA + +GG +P D+ +L + A RL+L EV G + L+ + RE
Sbjct: 242 MRVVA--VATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAARE 299
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 15 NTSPSADDIKGILGSVGADCEDNRL 39
+TS S DD+ ++ +V +DC D+ L
Sbjct: 264 STSGSMDDLYNMINTVKSDCPDSTL 288
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 15 NTSPSADDIKGILGSVGADCEDNRL 39
+TS S DD+ ++ +V +DC D+ L
Sbjct: 264 STSGSMDDLYNMINTVKSDCPDSTL 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,319,656
Number of Sequences: 62578
Number of extensions: 60638
Number of successful extensions: 164
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)