Query 033355
Match_columns 121
No_of_seqs 139 out of 809
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 21:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 100.0 5.7E-44 1.9E-48 255.6 5.7 111 1-111 1-112 (113)
2 3izc_v 60S acidic ribosomal pr 100.0 7.3E-41 2.5E-45 237.1 5.6 104 1-111 1-105 (106)
3 3izc_t 60S acidic ribosomal pr 100.0 1.7E-33 5.8E-38 199.3 5.5 101 1-111 3-105 (106)
4 3iz5_t 60S acidic ribosomal pr 100.0 8.2E-33 2.8E-37 196.9 7.1 100 4-111 7-109 (110)
5 2lbf_B 60S acidic ribosomal pr 100.0 1.4E-28 4.9E-33 162.8 7.0 69 1-69 2-70 (70)
6 3a1y_A 50S ribosomal protein P 99.8 2.5E-21 8.5E-26 123.7 8.0 56 1-57 1-56 (58)
7 2lbf_A 60S acidic ribosomal pr 99.8 1.3E-19 4.6E-24 119.3 5.8 61 1-69 7-67 (69)
8 3iz5_s 60S acidic ribosomal pr 98.4 5.7E-08 1.9E-12 79.2 2.1 20 92-111 298-318 (319)
9 2zkr_g 60S acidic ribosomal pr 98.4 3.8E-09 1.3E-13 86.0 -6.5 20 92-111 296-316 (317)
10 3u5i_q A0, L10E, 60S acidic ri 98.1 3.4E-07 1.2E-11 74.4 0.0 20 92-111 291-311 (312)
11 3iz5_t 60S acidic ribosomal pr 92.5 0.06 2.1E-06 37.6 2.2 26 26-52 14-39 (110)
12 3iz5_v 60S acidic ribosomal pr 88.6 0.083 2.8E-06 37.1 0.0 20 16-35 32-52 (113)
13 3izc_t 60S acidic ribosomal pr 88.6 0.086 2.9E-06 36.6 0.1 19 27-45 14-32 (106)
14 3j21_k Acidic ribosomal protei 86.2 0.14 4.8E-06 41.6 0.0 11 46-56 283-293 (339)
15 3iz5_s 60S acidic ribosomal pr 75.1 0.59 2E-05 37.7 0.0 20 90-109 300-319 (319)
16 3izc_v 60S acidic ribosomal pr 72.7 0.73 2.5E-05 31.8 0.0 14 17-30 32-45 (106)
17 3u5i_q A0, L10E, 60S acidic ri 64.5 1.4 4.7E-05 35.4 0.0 20 90-109 293-312 (312)
18 3j21_k Acidic ribosomal protei 62.8 1.5 5.3E-05 35.4 0.0 8 18-25 234-241 (339)
19 1avs_A Troponin C; muscle cont 61.3 15 0.00052 22.0 4.5 51 6-56 25-80 (90)
20 3kz3_A Repressor protein CI; f 59.6 17 0.0006 21.8 4.6 31 12-42 46-76 (80)
21 2lv7_A Calcium-binding protein 57.5 12 0.00041 24.1 3.7 41 6-46 41-81 (100)
22 2mys_C Myosin; muscle protein, 55.6 36 0.0012 21.5 6.5 50 7-56 14-70 (149)
23 2kn2_A Calmodulin; S MAPK phos 55.1 22 0.00077 21.2 4.5 51 6-56 14-69 (92)
24 2kz2_A Calmodulin, CAM; TR2C, 54.3 31 0.0011 21.2 5.3 51 6-56 34-89 (94)
25 1j7q_A CAVP, calcium vector pr 54.2 30 0.001 20.4 5.0 41 6-46 19-62 (86)
26 3i5g_C Myosin catalytic light 52.7 24 0.00082 24.0 4.8 53 4-56 88-147 (159)
27 1tiz_A Calmodulin-related prot 52.1 28 0.00095 19.1 4.4 42 6-47 6-47 (67)
28 2ktg_A Calmodulin, putative; e 49.6 18 0.00063 21.2 3.4 51 6-56 19-74 (85)
29 2joj_A Centrin protein; N-term 48.8 19 0.00066 20.6 3.3 51 6-56 12-67 (77)
30 4ds7_A Calmodulin, CAM; protei 48.1 37 0.0013 21.4 4.9 41 7-47 90-130 (147)
31 2lhi_A Calmodulin, serine/thre 46.0 33 0.0011 23.6 4.8 53 4-56 87-143 (176)
32 2mys_B Myosin; muscle protein, 45.2 56 0.0019 21.3 5.6 51 6-56 30-82 (166)
33 2ovk_B RLC, myosin regulatory 44.9 39 0.0013 21.8 4.7 50 7-56 22-72 (153)
34 2zkr_g 60S acidic ribosomal pr 44.6 1.1 3.7E-05 36.2 -3.7 19 91-109 299-317 (317)
35 2qac_A Myosin A tail domain in 44.2 59 0.002 20.7 5.5 51 6-56 19-71 (146)
36 2lmt_A Calmodulin-related prot 43.0 47 0.0016 21.6 5.0 42 5-46 87-128 (148)
37 1s6j_A CDPK, calcium-dependent 42.7 32 0.0011 20.1 3.8 41 7-47 29-69 (87)
38 1qx2_A Vitamin D-dependent cal 42.1 26 0.0009 19.8 3.2 41 6-46 10-54 (76)
39 1k94_A Grancalcin; penta-EF-ha 42.1 60 0.002 21.2 5.4 47 10-56 79-128 (165)
40 1exr_A Calmodulin; high resolu 41.9 58 0.002 20.9 5.3 50 7-56 89-143 (148)
41 2ewt_A BLDD, putative DNA-bind 41.2 38 0.0013 19.3 3.8 25 12-36 44-68 (71)
42 1k9u_A Polcalcin PHL P 7; poll 41.1 35 0.0012 19.6 3.7 40 6-46 8-47 (78)
43 2qac_A Myosin A tail domain in 41.1 24 0.00082 22.6 3.2 34 13-46 96-129 (146)
44 2obh_A Centrin-2; DNA repair c 41.0 61 0.0021 20.8 5.3 41 6-46 84-124 (143)
45 2keb_A DNA polymerase subunit 40.9 38 0.0013 23.1 4.2 43 14-56 22-66 (101)
46 1y7y_A C.AHDI; helix-turn-heli 40.9 40 0.0014 19.2 3.9 25 12-36 47-71 (74)
47 2mys_C Myosin; muscle protein, 40.8 52 0.0018 20.7 4.8 39 7-45 91-129 (149)
48 2ovk_B RLC, myosin regulatory 40.6 41 0.0014 21.6 4.3 44 13-56 97-144 (153)
49 2opo_A Polcalcin CHE A 3; calc 40.5 36 0.0012 20.0 3.7 50 6-56 16-70 (86)
50 1taf_B TFIID TBP associated fa 39.7 44 0.0015 21.0 4.1 45 16-61 5-50 (70)
51 1wlz_A DJBP, CAP-binding prote 39.7 49 0.0017 20.2 4.4 50 7-56 30-84 (105)
52 3omt_A Uncharacterized protein 38.4 51 0.0017 19.1 4.1 25 12-36 42-66 (73)
53 3bs3_A Putative DNA-binding pr 37.7 49 0.0017 19.0 4.0 26 12-37 44-69 (76)
54 1k8u_A S100A6, calcyclin, CACY 37.6 48 0.0016 19.4 4.0 53 4-56 13-75 (90)
55 2b1u_A Calmodulin-like protein 37.5 25 0.00084 19.7 2.5 34 14-47 19-52 (71)
56 3fwb_A Cell division control p 37.4 50 0.0017 21.1 4.3 39 9-47 104-142 (161)
57 3qrx_A Centrin; calcium-bindin 37.2 75 0.0026 20.6 5.3 50 7-56 107-161 (169)
58 1ggw_A Protein (CDC4P); light 37.1 39 0.0013 21.3 3.7 35 13-47 88-122 (140)
59 3ox6_A Calcium-binding protein 37.0 71 0.0024 20.0 5.0 40 7-46 94-134 (153)
60 1k2h_A S100A1, S-100 protein, 37.0 65 0.0022 19.0 5.5 52 5-56 13-76 (93)
61 2xi8_A Putative transcription 36.6 45 0.0015 18.4 3.6 24 12-35 35-58 (66)
62 1n1j_A NF-YB; histone-like PAI 36.5 83 0.0028 20.1 5.2 37 6-42 51-87 (93)
63 3s8q_A R-M controller protein; 36.4 66 0.0023 18.9 5.0 28 11-38 44-71 (82)
64 3b7h_A Prophage LP1 protein 11 36.4 44 0.0015 19.3 3.6 24 12-35 41-65 (78)
65 2r1j_L Repressor protein C2; p 35.8 46 0.0016 18.5 3.5 22 13-34 40-61 (68)
66 1taf_A TFIID TBP associated fa 35.7 37 0.0013 21.3 3.2 27 20-46 4-31 (68)
67 3g5g_A Regulatory protein; tra 35.5 78 0.0027 20.0 5.0 27 11-37 61-87 (99)
68 2b5a_A C.BCLI; helix-turn-heli 35.4 48 0.0016 19.1 3.7 23 13-35 45-67 (77)
69 1adr_A P22 C2 repressor; trans 35.3 52 0.0018 18.8 3.8 20 36-56 47-66 (76)
70 1c7v_A CAVP, calcium vector pr 34.4 24 0.00083 20.5 2.2 51 6-56 13-69 (81)
71 3h4s_E KCBP interacting Ca2+-b 34.3 67 0.0023 20.9 4.6 51 6-56 45-101 (135)
72 3i5g_B Myosin regulatory light 34.0 34 0.0012 23.1 3.1 42 6-47 90-131 (153)
73 3f6w_A XRE-family like protein 33.3 71 0.0024 18.8 4.3 24 13-36 49-72 (83)
74 2ict_A Antitoxin HIGA; helix-t 33.0 67 0.0023 19.6 4.2 28 12-40 42-69 (94)
75 2bl0_C Myosin regulatory light 32.9 53 0.0018 20.6 3.8 35 13-47 91-125 (142)
76 3dtp_E RLC, myosin regulatory 32.8 64 0.0022 22.1 4.5 51 6-56 62-113 (196)
77 2k9q_A Uncharacterized protein 32.8 44 0.0015 19.6 3.2 37 18-56 27-63 (77)
78 1lmb_3 Protein (lambda repress 32.2 77 0.0026 19.0 4.4 29 11-39 50-78 (92)
79 2eby_A Putative HTH-type trans 31.8 69 0.0024 20.2 4.2 25 11-35 44-68 (113)
80 1wdc_B Scallop myosin; calcium 31.7 88 0.003 20.0 4.9 51 6-56 23-74 (156)
81 3i5g_B Myosin regulatory light 31.3 83 0.0028 21.0 4.8 51 6-56 21-72 (153)
82 2ovk_C Myosin catalytic light 31.2 52 0.0018 21.3 3.6 45 12-56 96-147 (159)
83 1dtl_A Cardiac troponin C; hel 31.2 95 0.0033 19.8 4.9 50 7-56 24-79 (161)
84 1top_A Troponin C; contractIle 31.0 1E+02 0.0034 19.6 5.0 35 12-46 107-141 (162)
85 3trb_A Virulence-associated pr 30.8 83 0.0028 20.3 4.6 32 8-40 44-75 (104)
86 3li6_A Calcium-binding protein 30.3 37 0.0012 18.7 2.4 35 12-46 11-45 (66)
87 2mys_B Myosin; muscle protein, 30.1 91 0.0031 20.2 4.8 50 7-56 101-155 (166)
88 1juo_A Sorcin; calcium-binding 30.1 56 0.0019 22.3 3.8 34 13-46 115-148 (198)
89 2pvb_A Protein (parvalbumin); 30.0 67 0.0023 19.5 3.8 41 6-46 46-89 (108)
90 3fwb_A Cell division control p 30.0 98 0.0034 19.6 4.8 48 9-56 31-83 (161)
91 1rwy_A Parvalbumin alpha; EF-h 29.9 72 0.0025 19.3 4.0 41 6-46 46-89 (109)
92 2pmy_A RAS and EF-hand domain- 29.5 85 0.0029 18.8 4.2 39 6-46 32-70 (91)
93 2bl0_C Myosin regulatory light 29.0 71 0.0024 20.0 3.9 50 7-56 12-66 (142)
94 2jd3_A STBB protein; plasmid s 28.9 60 0.002 23.1 3.7 24 6-30 58-81 (130)
95 2jnf_A Troponin C; stretch act 28.9 74 0.0025 20.3 4.0 40 7-46 97-136 (158)
96 3f52_A CLP gene regulator (CLG 28.7 78 0.0027 20.1 4.1 24 13-36 63-86 (117)
97 1pva_A Parvalbumin; calcium bi 28.7 72 0.0025 19.4 3.8 41 7-47 48-91 (110)
98 3qq6_A HTH-type transcriptiona 28.6 68 0.0023 19.1 3.6 21 15-35 48-68 (78)
99 1gjy_A Sorcin, CP-22, V19; cal 28.3 1.1E+02 0.0038 19.9 5.0 53 4-56 4-66 (167)
100 1exr_A Calmodulin; high resolu 28.3 91 0.0031 19.9 4.4 40 7-46 16-55 (148)
101 2lnk_A Protein S100-A4; EF-han 28.0 1.2E+02 0.0041 20.0 5.0 53 4-56 25-89 (113)
102 1bu3_A Calcium-binding protein 27.5 79 0.0027 19.2 3.9 41 6-46 47-90 (109)
103 1x57_A Endothelial differentia 27.4 71 0.0024 19.3 3.6 23 14-36 49-71 (91)
104 1yx7_A Calsensin, LAN3-6 antig 27.4 92 0.0032 17.8 5.6 52 5-56 11-73 (83)
105 4ds7_A Calmodulin, CAM; protei 27.2 79 0.0027 19.7 3.9 48 9-56 19-71 (147)
106 3fs7_A Parvalbumin, thymic; ca 26.8 81 0.0028 19.1 3.8 40 7-46 48-90 (109)
107 3r1f_A ESX-1 secretion-associa 26.7 66 0.0023 21.9 3.6 33 6-38 46-79 (135)
108 1wgl_A TOLL-interacting protei 26.5 47 0.0016 20.1 2.5 19 18-36 23-41 (59)
109 2d58_A Allograft inflammatory 26.5 48 0.0016 20.6 2.7 43 14-56 45-92 (107)
110 2bl0_B Myosin regulatory light 26.2 56 0.0019 20.4 3.0 35 13-47 88-122 (145)
111 2jjz_A Ionized calcium-binding 26.1 59 0.002 21.6 3.3 43 14-56 63-110 (150)
112 2kpj_A SOS-response transcript 26.1 97 0.0033 18.9 4.1 37 18-56 34-70 (94)
113 3sjs_A URE3-BP sequence specif 26.1 92 0.0031 22.0 4.4 38 10-47 126-163 (220)
114 3qrx_A Centrin; calcium-bindin 26.1 1.1E+02 0.0036 19.8 4.5 49 8-56 35-88 (169)
115 1uhk_A Aequorin 2, aequorin; E 25.8 76 0.0026 20.9 3.8 52 6-57 114-170 (191)
116 3j04_B Myosin regulatory light 25.5 35 0.0012 21.5 1.9 33 14-46 89-121 (143)
117 5pal_A Parvalbumin; calcium-bi 25.4 93 0.0032 18.8 3.9 38 9-46 49-89 (109)
118 3ivp_A Putative transposon-rel 25.3 81 0.0028 20.4 3.7 25 12-36 46-70 (126)
119 1c07_A Protein (epidermal grow 25.2 1E+02 0.0035 18.9 4.1 42 3-46 12-53 (95)
120 1y1x_A Leishmania major homolo 25.2 1.4E+02 0.0047 20.2 5.1 50 7-56 99-153 (191)
121 1wdc_B Scallop myosin; calcium 25.1 67 0.0023 20.6 3.3 44 13-56 99-146 (156)
122 3qwg_A ESX-1 secretion-associa 25.0 79 0.0027 21.3 3.7 34 6-39 44-78 (123)
123 1alv_A Calpain, S-camld; calci 25.0 89 0.003 20.6 4.0 44 12-55 88-135 (173)
124 1qjt_A EH1, epidermal growth f 24.8 1.1E+02 0.0038 19.2 4.3 53 2-56 12-69 (99)
125 2f2o_A Calmodulin fused with c 24.6 1.5E+02 0.0051 19.3 5.3 48 9-56 19-71 (179)
126 2jnf_A Troponin C; stretch act 24.5 83 0.0028 20.1 3.7 45 13-57 26-75 (158)
127 2l49_A C protein; P2 bacteriop 24.4 61 0.0021 19.8 2.8 26 13-38 39-64 (99)
128 2aao_A CDPK, calcium-dependent 24.4 1.4E+02 0.0049 19.0 4.9 48 9-56 35-87 (166)
129 2i7a_A Calpain 13; calcium-dep 24.1 61 0.0021 22.4 3.1 42 5-47 80-125 (174)
130 3rm1_A Protein S100-B; alpha-h 24.0 1.3E+02 0.0044 18.3 6.0 40 17-56 27-76 (92)
131 1w7j_B Myosin light chain 1; m 23.9 37 0.0013 21.7 1.8 35 13-47 99-133 (151)
132 3lfp_A CSP231I C protein; tran 23.8 1.1E+02 0.0036 18.9 4.0 27 11-37 38-64 (98)
133 2wiu_B HTH-type transcriptiona 23.6 46 0.0016 19.8 2.1 20 16-35 50-69 (88)
134 1wy9_A Allograft inflammatory 23.5 53 0.0018 21.8 2.6 43 14-56 61-108 (147)
135 3vk0_A NHTF, transcriptional r 23.5 83 0.0028 20.1 3.5 25 12-36 55-79 (114)
136 1k94_A Grancalcin; penta-EF-ha 23.5 1.6E+02 0.0053 19.1 5.1 50 6-55 4-63 (165)
137 3cec_A Putative antidote prote 23.0 86 0.003 19.5 3.4 25 11-35 51-75 (104)
138 2ofy_A Putative XRE-family tra 22.8 1E+02 0.0035 18.2 3.7 17 17-33 54-70 (86)
139 1xk4_A Calgranulin A; S100 fam 22.6 1.1E+02 0.0037 18.4 3.7 43 4-46 13-58 (93)
140 2bec_A Calcineurin B homologou 22.0 1.3E+02 0.0045 20.3 4.5 51 6-56 119-179 (202)
141 2znd_A Programmed cell death p 21.9 1.4E+02 0.0049 19.4 4.5 36 12-47 85-120 (172)
142 2y5i_A S100Z, S100 calcium bin 21.7 1.6E+02 0.0053 18.4 5.3 54 3-56 12-77 (99)
143 2a6c_A Helix-turn-helix motif; 21.3 1.2E+02 0.004 18.2 3.7 24 12-35 52-76 (83)
144 1qv0_A Obelin, OBL; photoprote 21.2 74 0.0025 21.1 3.0 51 7-57 119-174 (195)
145 2lhi_A Calmodulin, serine/thre 21.0 82 0.0028 21.6 3.2 40 7-46 17-56 (176)
146 3ox6_A Calcium-binding protein 21.0 1.6E+02 0.0054 18.3 7.4 50 7-56 17-71 (153)
147 1b4a_A Arginine repressor; hel 20.1 1.7E+02 0.0058 20.6 4.8 33 15-47 17-49 (149)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=100.00 E-value=5.7e-44 Score=255.58 Aligned_cols=111 Identities=60% Similarity=0.892 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCCCcccccCCCCC
Q 033355 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG 80 (121)
Q Consensus 1 MkyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg~a~aaaaaa~a 80 (121)
||||+|||||+++||.+||++||++||+++||+||++|+++|++.|+||||++||++|++||+|+|+||+++++++++++
T Consensus 1 M~yvaAylL~~l~G~~~ptad~I~~ILkAaGveVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a~a~a 80 (113)
T 3iz5_v 1 MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSAAAPA 80 (113)
T ss_dssp CHHHHHHHHHHHHTCCCCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC---------------------
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876533222222
Q ss_pred CCCCCcchhhhhhhhhhhccccccccc-cccc
Q 033355 81 GAGAAPAAAEAKKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 81 ~~~~~~a~~~~~~e~k~eeeEE~ddDm-f~l~ 111 (121)
+++++++++++++++|+||+||||||| ||||
T Consensus 81 ~~~~a~~a~~~~~e~k~ee~EEsDdDmGFgLF 112 (113)
T 3iz5_v 81 AGGAAAPAAESKKEEKVVEKEESDDDMGFSLF 112 (113)
T ss_dssp --------------------------------
T ss_pred ccccccccchhhhhhhcccccccccccccCcC
Confidence 121211111345556677888899999 9998
No 2
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=100.00 E-value=7.3e-41 Score=237.10 Aligned_cols=104 Identities=46% Similarity=0.675 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCCCcccccCCCCC
Q 033355 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSAG 80 (121)
Q Consensus 1 MkyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg~a~aaaaaa~a 80 (121)
||||+|||||+++|+. ||++||++||+++||+||++|+++|++.|+||||++||++|++||+|+|+||+++++++ +++
T Consensus 1 M~yvaAyLL~~~gG~e-~tad~I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~aa~a-~~a 78 (106)
T 3izc_v 1 MKYLAAYLLLNAAGNT-PDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGA-AAA 78 (106)
T ss_dssp CHHHHHHHHHHHHTCC-CTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC---------------------
T ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccccccc-ccc
Confidence 9999999999999988 99999999999999999999999999999999999999999999999999887543321 211
Q ss_pred CCCCCcchhhhhhhhhhhccccccccc-cccc
Q 033355 81 GAGAAPAAAEAKKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 81 ~~~~~~a~~~~~~e~k~eeeEE~ddDm-f~l~ 111 (121)
+ ++ + ++++++|+|++||||||| ||||
T Consensus 79 -~-~~--~-~~~~e~kee~~EEsdddmGfgLF 105 (106)
T 3izc_v 79 -S-GD--A-AAEEEKEEEAAEESDDDMGFGLF 105 (106)
T ss_dssp --------------------------------
T ss_pred -c-cc--c-ccccccccccccccccccCCCCC
Confidence 1 11 1 234455667788899999 9998
No 3
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.98 E-value=1.7e-33 Score=199.32 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCCCcccccCCCC
Q 033355 1 MKVVAAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPSA 79 (121)
Q Consensus 1 MkyvaAYlLl~l~G-~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg~a~aaaaaa~ 79 (121)
|+|+++|++|+|++ +.+||++||++||+++||+||++|+++|++.|+||||++||+ ++++||+++++++ ++
T Consensus 3 ~ela~~YaaLiL~d~~~~~tad~I~~ilkAaGveVe~~~~~lfa~aL~gknI~eLI~-------~~~ag~~~~aa~a-~~ 74 (106)
T 3izc_t 3 TESALSYAALILADSEIEISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLV-------NFSAGAAAPAGVA-GG 74 (106)
T ss_dssp --CHHHHHHHHHHHHTCCCSHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHTT-------CCC-------------
T ss_pred hHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHhcCCCHHHHHH-------hccCcCccccccc-cc
Confidence 58999999999996 567999999999999999999999999999999999999998 6766655442221 11
Q ss_pred CCCCCCcchhhhhhhhhhhccccccccc-cccc
Q 033355 80 GGAGAAPAAAEAKKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 80 a~~~~~~a~~~~~~e~k~eeeEE~ddDm-f~l~ 111 (121)
+++ +++++ ++++++|+|++||||||| ||||
T Consensus 75 a~~-~~~a~-~~~~~~kee~~EEsddDmGfgLF 105 (106)
T 3izc_t 75 VAG-GEAGE-AEAEKEEEEAKEESDDDMGFGLF 105 (106)
T ss_dssp ---------------------------------
T ss_pred ccc-ccccc-chhhhhhcccccccccccccCcC
Confidence 111 11111 334455667778899999 9998
No 4
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.97 E-value=8.2e-33 Score=196.94 Aligned_cols=100 Identities=33% Similarity=0.439 Sum_probs=49.3
Q ss_pred HHHHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCCCcccccCCC-CCC
Q 033355 4 VAAYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGGGVAVAAAPS-AGG 81 (121)
Q Consensus 4 vaAYlLl~l~G-~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg~a~aaaaaa-~a~ 81 (121)
.+.|++|+|++ +.+||++||++||+++||+||++|+++|++.|+||||++||+ |+++||+++++++++ +++
T Consensus 7 a~~YaaLiL~d~~~~itad~I~~ilkAaGveVe~~~~~lfakaL~gknI~eLI~-------sv~~gg~a~~a~a~~a~~~ 79 (110)
T 3iz5_t 7 ACTLAALILHDDGIPITSEKIATVVKAAGIKVEAYWPALFAKLLEKRSVDDLIL-------SVGSGGGGAPAAAAAAPAA 79 (110)
T ss_dssp HHHHHHHHHHHHTCCCSHHHHHHHHHHHTCCCCSHHHHHHHHHHTTCCHHHHHT-------CCC----------------
T ss_pred HHHHHHHHHcCCCCCcChHHHHHHHHHhCCcccHHHHHHHHHHcCCCCHHHHHh-------cCCCccccccccccccccc
Confidence 45566666653 567999999999999999999999999999999999999997 888887654322111 111
Q ss_pred CCCCcchhhhhhhhhhhccccccccc-cccc
Q 033355 82 AGAAPAAAEAKKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 82 ~~~~~a~~~~~~e~k~eeeEE~ddDm-f~l~ 111 (121)
+++++++ ++++++|+||+||||||| ||||
T Consensus 80 ~~~~~a~-~~~~e~k~ee~EEsddDmGfgLF 109 (110)
T 3iz5_t 80 GGAAAAE-EKKEEKKEEAKEESDDDMGFSLF 109 (110)
T ss_dssp -------------------------------
T ss_pred ccccccc-chhhhhccccccccccccccccC
Confidence 1111112 334556667788999999 9998
No 5
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=99.95 E-value=1.4e-28 Score=162.81 Aligned_cols=69 Identities=61% Similarity=0.964 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCC
Q 033355 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG 69 (121)
Q Consensus 1 MkyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg 69 (121)
|||+|||||++++|+.+||++||++||+++|++||++|+++|+++|+||||+|||++|.+||+|+|+||
T Consensus 2 M~yvyA~Lll~~~g~~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~g~~kl~s~p~gg 70 (70)
T 2lbf_B 2 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 70 (70)
T ss_dssp CCTHHHHHHHHHHTCSSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTTCSSSCSSCCCCC
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999789999999999999999999999999999999999999999999999999875
No 6
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.85 E-value=2.5e-21 Score=123.68 Aligned_cols=56 Identities=29% Similarity=0.478 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHh
Q 033355 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIAS 57 (121)
Q Consensus 1 MkyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~ 57 (121)
|+|++||+||+..|+ +||++||++||+++|++||++|+++|++.|+||||++||++
T Consensus 1 m~~~yAallL~~~g~-~~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 1 MEYVYAALLLHSVGK-EINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp CHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 999999999999986 79999999999999999999999999999999999999973
No 7
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=119.29 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHHhhhhhhcccCCCC
Q 033355 1 MKVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKLASVPSGG 69 (121)
Q Consensus 1 MkyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~~G~~kl~sv~agg 69 (121)
|.|++|.+||+..| .+||++||++||+++|++||++|+++|++.|+||||++||+ ++++||
T Consensus 7 la~~YAAllL~~~g-~~~ta~~I~~il~AaGveve~~~~~lf~~aL~gk~I~elI~-------~~g~g~ 67 (69)
T 2lbf_A 7 LACIYSALILHDDE-VTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLIC-------NVGAGG 67 (69)
T ss_dssp HHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGGT-------TTTCCC
T ss_pred HHHHHHHHHHHcCC-CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHH-------hccCCC
Confidence 35888888888887 47999999999999999999999999999999999999998 665554
No 8
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.44 E-value=5.7e-08 Score=79.17 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhhhhhccccccccc-cccc
Q 033355 92 KKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 92 ~~e~k~eeeEE~ddDm-f~l~ 111 (121)
++++++||+||||||| ||||
T Consensus 298 ~~~~~~e~~ee~d~d~gf~lf 318 (319)
T 3iz5_s 298 EEEKKEEPEEESDGDLGMSLF 318 (319)
T ss_dssp ---------------------
T ss_pred cccccccccccccccCCCCCC
Confidence 3445566677888898 9998
No 9
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.36 E-value=3.8e-09 Score=86.03 Aligned_cols=20 Identities=45% Similarity=0.498 Sum_probs=8.7
Q ss_pred hhhhhhhccccccccc-cccc
Q 033355 92 KKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 92 ~~e~k~eeeEE~ddDm-f~l~ 111 (121)
++++++||+||||||| ||||
T Consensus 296 ~~~~~~ee~ee~d~d~gf~lf 316 (317)
T 2zkr_g 296 AKVEAKEESEESDEDMGFGLF 316 (317)
T ss_dssp HSTTHHHHTSSCC--------
T ss_pred ccccccCCccccccccCcCCC
Confidence 4455566678889999 9987
No 10
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.12 E-value=3.4e-07 Score=74.37 Aligned_cols=20 Identities=45% Similarity=0.577 Sum_probs=0.0
Q ss_pred hhhhhhhccccccccc-cccc
Q 033355 92 KKEEKVEEKEESDDVR-FTYL 111 (121)
Q Consensus 92 ~~e~k~eeeEE~ddDm-f~l~ 111 (121)
++++++||+||||||| ||||
T Consensus 291 ~~~~~~e~~ee~d~d~gf~lf 311 (312)
T 3u5i_q 291 AEEAAAEEEEESDDDMGFGLF 311 (312)
T ss_dssp ---------------------
T ss_pred cccccccccccccccCCCCCC
Confidence 3445556677888899 9998
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=92.53 E-value=0.06 Score=37.63 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHhcCCCcchhHHHHHHHHhCCCChH
Q 033355 26 ILGSVGADCEDNRLELLLSEVKGKDIT 52 (121)
Q Consensus 26 Il~AaGveVd~~~~~~f~~~L~gk~i~ 52 (121)
||.-.|++|....++.++++. |.+++
T Consensus 14 iL~d~~~~itad~I~~ilkAa-GveVe 39 (110)
T 3iz5_t 14 ILHDDGIPITSEKIATVVKAA-GIKVE 39 (110)
T ss_dssp HHHHHTCCCSHHHHHHHHHHH-TCCCC
T ss_pred HHcCCCCCcChHHHHHHHHHh-CCccc
Confidence 556666777777777666654 44554
No 12
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=88.64 E-value=0.083 Score=37.09 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHhc-CCCcc
Q 033355 16 TSPSADDIKGILGSV-GADCE 35 (121)
Q Consensus 16 ~~~Tae~I~kIl~Aa-GveVd 35 (121)
.++....++.++++. |.+|+
T Consensus 32 veVe~~~~~lf~~aL~gk~I~ 52 (113)
T 3iz5_v 32 CEIDNEKMELMLSQVKGKDIT 52 (113)
T ss_dssp CCCCHHHHHHHHHHHTTCCHH
T ss_pred CCcCHHHHHHHHHHhcCCCHH
Confidence 458888888888877 34444
No 13
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=88.62 E-value=0.086 Score=36.58 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=8.1
Q ss_pred HHhcCCCcchhHHHHHHHH
Q 033355 27 LGSVGADCEDNRLELLLSE 45 (121)
Q Consensus 27 l~AaGveVd~~~~~~f~~~ 45 (121)
|.-.|++|....++.++++
T Consensus 14 L~d~~~~~tad~I~~ilkA 32 (106)
T 3izc_t 14 LADSEIEISSEKLLTLTNA 32 (106)
T ss_dssp HHHHTCCCSHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHH
Confidence 3333444444444444443
No 14
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.16 E-value=0.14 Score=41.59 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred hCCCChHHHHH
Q 033355 46 VKGKDITELIA 56 (121)
Q Consensus 46 L~gk~i~eLI~ 56 (121)
+.+.++++-+.
T Consensus 283 ~~~~~~~e~~~ 293 (339)
T 3j21_k 283 LPEDVLDEKTK 293 (339)
T ss_dssp -----------
T ss_pred hccccchhHHh
Confidence 33444444443
No 15
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=75.12 E-value=0.59 Score=37.72 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccccccccc
Q 033355 90 EAKKEEKVEEKEESDDVRFT 109 (121)
Q Consensus 90 ~~~~e~k~eeeEE~ddDmf~ 109 (121)
++++|+++|++++-..++|+
T Consensus 300 ~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 300 EKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp --------------------
T ss_pred cccccccccccccCCCCCCC
Confidence 33444444555555777774
No 16
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=72.74 E-value=0.73 Score=31.80 Aligned_cols=14 Identities=7% Similarity=0.352 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHhc
Q 033355 17 SPSADDIKGILGSV 30 (121)
Q Consensus 17 ~~Tae~I~kIl~Aa 30 (121)
++....++.++++.
T Consensus 32 eVe~~~~~~f~~aL 45 (106)
T 3izc_v 32 EIEDEKVSSVLSAL 45 (106)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHc
Confidence 46777777777765
No 17
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=64.50 E-value=1.4 Score=35.43 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccccccccc
Q 033355 90 EAKKEEKVEEKEESDDVRFT 109 (121)
Q Consensus 90 ~~~~e~k~eeeEE~ddDmf~ 109 (121)
++++|+++|++++-..++|+
T Consensus 293 ~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 293 EAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp --------------------
T ss_pred cccccccccccccCCCCCCC
Confidence 33444444445555677764
No 18
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.83 E-value=1.5 Score=35.42 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCHHHHHH
Q 033355 18 PSADDIKG 25 (121)
Q Consensus 18 ~Tae~I~k 25 (121)
||.+.+..
T Consensus 234 pT~~svp~ 241 (339)
T 3j21_k 234 PTPQTIEA 241 (339)
T ss_dssp --------
T ss_pred CCHHHHHH
Confidence 44444333
No 19
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=61.26 E-value=15 Score=22.05 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..|+-.|+.+++..+|...|..+....+..+++.+.. .++++.+.
T Consensus 25 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~ 80 (90)
T 1avs_A 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80 (90)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 4444444555679999999999999999988888888887742 34566654
No 20
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=59.58 E-value=17 Score=21.77 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=25.1
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHH
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELL 42 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f 42 (121)
..|+..|+.+.+.+|.+..|++++...+.+.
T Consensus 46 e~g~~~~~~~~~~~ia~~l~v~~~~l~~~l~ 76 (80)
T 3kz3_A 46 FNGINALNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhCCCHHHHhHHHH
Confidence 4567779999999999999999987766543
No 21
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=57.49 E-value=12 Score=24.09 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
++-++-..|+-.||.++++.+|+..|..+....+..+++.+
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34444445666799999999999999999888888777776
No 22
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=55.65 E-value=36 Score=21.46 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=36.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh-------CCCChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV-------KGKDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L-------~gk~i~eLI~ 56 (121)
+-.+-..|+-.+|.+++..+|...|.......+..+.+.+ ...++++.+.
T Consensus 14 F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~g~i~~~eF~~ 70 (149)
T 2mys_C 14 FLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70 (149)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccCCcCcHHHHHH
Confidence 3334344555699999999999999998888888887777 2356677665
No 23
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=55.11 E-value=22 Score=21.21 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..++-.|+.+++..+|...|..+....+..+++.+.. .+.++.+.
T Consensus 14 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~ 69 (92)
T 2kn2_A 14 AFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69 (92)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 4444444455569999999999999999888888888887741 46667665
No 24
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=54.32 E-value=31 Score=21.23 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..|+-.|+.+++..+|...|..+....+..+++.+.. .++++.+.
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~ 89 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 89 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 3444444455569999999999999998888888877777631 34555543
No 25
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=54.20 E-value=30 Score=20.40 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhH---HHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNR---LELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~---~~~f~~~L 46 (121)
++-++-..|+-.|+.+++..+|...|..+.... +..+++.+
T Consensus 19 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 19 IFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGP 62 (86)
T ss_dssp HHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 344444445557999999999999999888777 66666665
No 26
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=52.68 E-value=24 Score=24.05 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-------CChHHHHH
Q 033355 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-------KDITELIA 56 (121)
Q Consensus 4 vaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-------k~i~eLI~ 56 (121)
.-|+-++-..|+-.||.++++.+|+..|..+...-+..+++.+.. .+.++.+.
T Consensus 88 ~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~ 147 (159)
T 3i5g_C 88 MEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp HHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHH
T ss_pred HHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHH
Confidence 345555555566679999999999999999999888888887641 35667665
No 27
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=52.11 E-value=28 Score=19.13 Aligned_cols=42 Identities=7% Similarity=0.081 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
++-.+-..++-.++.+++..++...|..+....+..+.+.+.
T Consensus 6 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D 47 (67)
T 1tiz_A 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEID 47 (67)
T ss_dssp HHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHC
Confidence 334444445556999999999999999888888887777773
No 28
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=49.57 E-value=18 Score=21.21 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..|+-.++.+++..+|...|..+....+..+++.+.. .+.++.+.
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 74 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSSSCSEEEHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 3344434455569999999999999999888888888877732 34566554
No 29
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=48.80 E-value=19 Score=20.60 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..++-.++.+++..++...|..+....+..+.+.+.. .+.++.+.
T Consensus 12 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 67 (77)
T 2joj_A 12 AFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67 (77)
T ss_dssp HHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred HHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence 3444444455569999999999999998888888877777642 34555554
No 30
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=48.06 E-value=37 Score=21.37 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
+-.+-..++-.+|.+++..++...|..+....+..+++.+.
T Consensus 90 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130 (147)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS
T ss_pred HHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 33333345556999999999999999998888888888774
No 31
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.00 E-value=33 Score=23.64 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC----CChHHHHH
Q 033355 4 VAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG----KDITELIA 56 (121)
Q Consensus 4 vaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g----k~i~eLI~ 56 (121)
..|+-++-..|+-.||.++++.+|...|..+....++.+++.+.. .+++|.+.
T Consensus 87 ~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~dd~dG~I~~~EF~~ 143 (176)
T 2lhi_A 87 LEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFAA 143 (176)
T ss_dssp HHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTSSCBCTTHHHH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhcCCCCeEeHHHHHH
Confidence 345555555566679999999999999999888888877776642 45566654
No 32
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=45.15 E-value=56 Score=21.28 Aligned_cols=51 Identities=16% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCC-CcchhHHHHHHHHhCC-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGA-DCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGv-eVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
.|-.+-..|+-.+|.+++..+|...|. .+....+..+.+...| .++.+.+.
T Consensus 30 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~dg~i~~~eF~~ 82 (166)
T 2mys_B 30 AFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLT 82 (166)
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCCcCHHHHHH
Confidence 344444445667999999999999999 8887777777666655 56666664
No 33
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=44.93 E-value=39 Score=21.77 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=38.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
+-.+-..|+-.+|.+++..+|...|..+....+..+.+.+.| .+..+.+.
T Consensus 22 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~ 72 (153)
T 2ovk_B 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLT 72 (153)
T ss_dssp HHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHSSSCCCSHHHHH
T ss_pred HHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 333334455679999999999999999998888888877754 56777776
No 34
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.61 E-value=1.1 Score=36.16 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=4.4
Q ss_pred hhhhhhhhccccccccccc
Q 033355 91 AKKEEKVEEKEESDDVRFT 109 (121)
Q Consensus 91 ~~~e~k~eeeEE~ddDmf~ 109 (121)
+++++++|++++...++|+
T Consensus 299 ~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 299 EAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp THHHHTSSCC---------
T ss_pred cccCCccccccccCcCCCC
Confidence 3334444445555666664
No 35
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=44.23 E-value=59 Score=20.66 Aligned_cols=51 Identities=6% Similarity=-0.102 Sum_probs=36.7
Q ss_pred HHHHHHhcC-CCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-CChHHHHH
Q 033355 6 AYLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G-~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
.+-.+-..+ +-.+|.+++..+|+..|..+....+..+.+.+.. .+.++.+.
T Consensus 19 ~F~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~i~~~eF~~ 71 (146)
T 2qac_A 19 VRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLE 71 (146)
T ss_dssp HHHHHHHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSEECHHHHHH
T ss_pred HHHHhCccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCHHHHHH
Confidence 444444445 5568999999999999998888777777776654 55566654
No 36
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=42.98 E-value=47 Score=21.64 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 5 AAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 5 aAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
.++-.+-..|+-.||.+++..+|...|..+....+..+++.+
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 455555556666799999999999999998888887777766
No 37
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=42.72 E-value=32 Score=20.13 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
+-++-..|+-.++.+++..++...|..+....+..+++.+.
T Consensus 29 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 69 (87)
T 1s6j_A 29 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAAD 69 (87)
T ss_dssp HHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHC
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 33333445556999999999999999988888877777763
No 38
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=42.12 E-value=26 Score=19.85 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHH-HhcCC-CCCCHHHHHHHHHhcCCCc--chhHHHHHHHHh
Q 033355 6 AYLLA-VLGGN-TSPSADDIKGILGSVGADC--EDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl-~l~G~-~~~Tae~I~kIl~AaGveV--d~~~~~~f~~~L 46 (121)
++-++ -..++ -.++.+++..+|...|..+ ....+..+++.+
T Consensus 10 ~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 10 AFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp HHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHH
T ss_pred HHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHh
Confidence 44444 33445 5699999999999999887 666666666666
No 39
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=42.07 E-value=60 Score=21.23 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC---CChHHHHH
Q 033355 10 AVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG---KDITELIA 56 (121)
Q Consensus 10 l~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g---k~i~eLI~ 56 (121)
+-..|+-.||.+++..++...|..+....+..+++.+.+ .+.++.+.
T Consensus 79 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~dg~i~~~eF~~ 128 (165)
T 1k94_A 79 VDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA 128 (165)
T ss_dssp HCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHHCBTTBCBHHHHHH
T ss_pred hCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCeEcHHHHHH
Confidence 333455579999999999999998888888877776622 34555543
No 40
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=41.93 E-value=58 Score=20.85 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-.+-..|+-.||.+++..++...|..+....+..+++.+.. .+.++.+.
T Consensus 89 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~ 143 (148)
T 1exr_A 89 FKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVR 143 (148)
T ss_dssp HHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHH
T ss_pred HHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 333333456679999999999999998888888877777631 34555543
No 41
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=41.18 E-value=38 Score=19.29 Aligned_cols=25 Identities=8% Similarity=0.217 Sum_probs=18.8
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033355 12 LGGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
..|+..|+.+.+.+|.+..|++++.
T Consensus 44 e~g~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 44 ERGDRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHTCSCCCHHHHHHHHHHHTSCGGG
T ss_pred HCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3466668888888888888887664
No 42
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=41.13 E-value=35 Score=19.59 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
++-++-..|+-.+|.+++..++...| .+....+..+.+.+
T Consensus 8 ~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 8 IFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEI 47 (78)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhC-CCCHHHHHHHHHHh
Confidence 34444444555699999999999999 87777777777776
No 43
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=41.07 E-value=24 Score=22.62 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=27.2
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
.|+-.||.+++..++...|..+....+..+++.+
T Consensus 96 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 96 NCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp TCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 3445689999999999999888887777777766
No 44
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=40.99 E-value=61 Score=20.81 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
++-++-..|+-.||.+++..++...|..+....+..+++.+
T Consensus 84 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 84 AFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33344344556799999999999999888887777777766
No 45
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.89 E-value=38 Score=23.14 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC--CCChHHHHH
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVK--GKDITELIA 56 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~--gk~i~eLI~ 56 (121)
|...+|+++|+.-+.--|+++++..++..+.... +.|-.++..
T Consensus 22 ~~~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~Ve 66 (101)
T 2keb_A 22 GSMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVG 66 (101)
T ss_dssp --CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred chhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7788999999999999999999999988877653 445455544
No 46
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=40.88 E-value=40 Score=19.25 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.6
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033355 12 LGGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
..|+..|+.+.+.+|.+..|++++.
T Consensus 47 e~g~~~~~~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 47 ERGQRNVSLVNILKLATALDIEPRE 71 (74)
T ss_dssp HTTCSCCBHHHHHHHHHHTTSCGGG
T ss_pred HCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 4566678888888888888877654
No 47
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=40.81 E-value=52 Score=20.67 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSE 45 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~ 45 (121)
+-++-..++-.||.+++..++...|..+....+..+++.
T Consensus 91 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 91 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred HHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 333333455569999999999999988877777766665
No 48
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=40.63 E-value=41 Score=21.65 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=33.8
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC----CChHHHHH
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG----KDITELIA 56 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g----k~i~eLI~ 56 (121)
.|+-.||.+++..++...|..+....+..+++.+.. .+.++.+.
T Consensus 97 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~I~~~eF~~ 144 (153)
T 2ovk_B 97 DGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYNKMVD 144 (153)
T ss_dssp SCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTEECHHHHHH
T ss_pred CCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCEEeHHHHHH
Confidence 455679999999999999999988888888877741 34555553
No 49
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=40.50 E-value=36 Score=19.97 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..|+-.|+.+++..+|...| .+....+..+.+.+.. .+.++.+.
T Consensus 16 ~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 70 (86)
T 2opo_A 16 IFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTD 70 (86)
T ss_dssp HHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred HHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 34444444555689999999999999 8887777777777731 35566554
No 50
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=39.69 E-value=44 Score=21.05 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHhcCC-CcchhHHHHHHHHhCCCChHHHHHhhhhh
Q 033355 16 TSPSADDIKGILGSVGA-DCEDNRLELLLSEVKGKDITELIASGREK 61 (121)
Q Consensus 16 ~~~Tae~I~kIl~AaGv-eVd~~~~~~f~~~L~gk~i~eLI~~G~~k 61 (121)
..+..+.|+.|.+++|+ .+.++....++..++- -+.+++.+..+.
T Consensus 5 s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEy-r~~eI~qeA~kf 50 (70)
T 1taf_B 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSI-KLKRIVQDAAKF 50 (70)
T ss_dssp CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45889999999999999 7999999888887652 344555544433
No 51
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=39.66 E-value=49 Score=20.19 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC-----CCChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~-----gk~i~eLI~ 56 (121)
+-++-..++-.|+.+++..+|...|..+....+..+++.+. ..++++.+.
T Consensus 30 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~ 84 (105)
T 1wlz_A 30 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84 (105)
T ss_dssp HHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHH
Confidence 33333445567999999999999999998888888887774 156778775
No 52
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.38 E-value=51 Score=19.06 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=18.3
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033355 12 LGGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
..|+..|+.+.+.+|.+..|++++.
T Consensus 42 e~g~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 42 CTNDVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3455568888888888888877654
No 53
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=37.72 E-value=49 Score=18.98 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=19.0
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchh
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDN 37 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~ 37 (121)
..|+..|+.+.+.+|.+..|++++..
T Consensus 44 e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 44 CSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp HTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 44656688888888888888776653
No 54
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=37.59 E-value=48 Score=19.40 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=36.9
Q ss_pred HHHHHHHHh-cCCC-CCCHHHHHHHHHh---cCCCcchhHHHHHHHHhC----C-CChHHHHH
Q 033355 4 VAAYLLAVL-GGNT-SPSADDIKGILGS---VGADCEDNRLELLLSEVK----G-KDITELIA 56 (121)
Q Consensus 4 vaAYlLl~l-~G~~-~~Tae~I~kIl~A---aGveVd~~~~~~f~~~L~----g-k~i~eLI~ 56 (121)
..+|-.+-. .|+- .|+.+++.++++. .|..+....+..+++.+. | .+.++.+.
T Consensus 13 ~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 75 (90)
T 1k8u_A 13 VAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVT 75 (90)
T ss_dssp HHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHH
T ss_pred HHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 345555553 5555 6999999999998 898888877777777662 1 34555553
No 55
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=37.46 E-value=25 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.434 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
++-.+|.+++..++...|..+....+..+.+.+.
T Consensus 19 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 52 (71)
T 2b1u_A 19 GDGHITVDELRRAMAGLGQPLPQEELDAMIREAD 52 (71)
T ss_dssp SSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCC
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 4446899999999999999888887777777663
No 56
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=37.41 E-value=50 Score=21.11 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
.+-..++-.||.+++..++...|..+....+..+++.+.
T Consensus 104 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 142 (161)
T 3fwb_A 104 LFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFD 142 (161)
T ss_dssp HHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTC
T ss_pred HHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 333345556999999999999999998888888887773
No 57
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=37.21 E-value=75 Score=20.55 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-.+-..|+-.||.+++..++...|..+....+..+++.+.. .+.++.+.
T Consensus 107 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 161 (169)
T 3qrx_A 107 FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 161 (169)
T ss_dssp HHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHH
T ss_pred HHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHH
Confidence 333333456679999999999999999988888888887732 45666654
No 58
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=37.06 E-value=39 Score=21.30 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.2
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
.++-.||.+++..++...|..+....+..+++.+.
T Consensus 88 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 122 (140)
T 1ggw_A 88 DATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 122 (140)
T ss_dssp SCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTT
T ss_pred CCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 34556999999999999998888888777777664
No 59
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=37.04 E-value=71 Score=20.00 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHh-cCCCcchhHHHHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGS-VGADCEDNRLELLLSEV 46 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~A-aGveVd~~~~~~f~~~L 46 (121)
+-.+-..++-.||.+++..++.. .|..+....+..+++.+
T Consensus 94 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 94 FREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 33333345557999999999999 89998888888887777
No 60
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=37.00 E-value=65 Score=19.03 Aligned_cols=52 Identities=15% Similarity=0.384 Sum_probs=37.8
Q ss_pred HHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchhHHHHHHHHhC----C-CChHHHHH
Q 033355 5 AAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVK----G-KDITELIA 56 (121)
Q Consensus 5 aAYlLl~-l~G~~-~~Tae~I~kIl~A-----aGveVd~~~~~~f~~~L~----g-k~i~eLI~ 56 (121)
.++-++- ..|+- .|+.+++..++.. .|..+....+..+++.+. | .+.++.+.
T Consensus 13 ~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 76 (93)
T 1k2h_A 13 NVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVV 76 (93)
T ss_dssp HHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHH
T ss_pred HHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 4455555 35555 6999999999998 998888888887777662 1 56666654
No 61
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=36.59 E-value=45 Score=18.45 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=15.0
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcc
Q 033355 12 LGGNTSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd 35 (121)
..|+..|+.+.+.+|.+..|++++
T Consensus 35 e~g~~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 35 EKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHH
Confidence 345555777777777777666544
No 62
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=36.51 E-value=83 Score=20.14 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELL 42 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f 42 (121)
|+..+...+...++.+||...++..|-.-.-.-++.+
T Consensus 51 A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~~~~~~ 87 (93)
T 1n1j_A 51 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLY 87 (93)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHcCcHhhHHHHHHH
Confidence 5677778888899999999999977765433333333
No 63
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=36.44 E-value=66 Score=18.94 Aligned_cols=28 Identities=4% Similarity=-0.072 Sum_probs=20.2
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchhH
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCEDNR 38 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd~~~ 38 (121)
...|+..|+.+.+.+|.+..|++++...
T Consensus 44 ~e~g~~~~~~~~l~~ia~~l~v~~~~l~ 71 (82)
T 3s8q_A 44 IERNSRNLTIKSLELIMKGLEVSDVVFF 71 (82)
T ss_dssp HHTTCCCCBHHHHHHHHHHTTCCHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 3456667888888888888887766543
No 64
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.39 E-value=44 Score=19.31 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=15.0
Q ss_pred hcCCC-CCCHHHHHHHHHhcCCCcc
Q 033355 12 LGGNT-SPSADDIKGILGSVGADCE 35 (121)
Q Consensus 12 l~G~~-~~Tae~I~kIl~AaGveVd 35 (121)
..|+. .|+.+.+.+|.+..|++++
T Consensus 41 e~g~~~~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 41 FEGRSKRPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp HCTTCCCCCHHHHHHHHHHHTCCHH
T ss_pred HcCCCCCCCHHHHHHHHHHcCCCHH
Confidence 34544 5777777777777666544
No 65
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.78 E-value=46 Score=18.53 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=12.4
Q ss_pred cCCCCCCHHHHHHHHHhcCCCc
Q 033355 13 GGNTSPSADDIKGILGSVGADC 34 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveV 34 (121)
.|+..|+.+.+.+|.+..|+++
T Consensus 40 ~g~~~~~~~~l~~i~~~l~~~~ 61 (68)
T 2r1j_L 40 RSETEPNGENLLALSKALQCSP 61 (68)
T ss_dssp TTSSCCBHHHHHHHHHHTTSCH
T ss_pred cCCCCCCHHHHHHHHHHhCCCH
Confidence 3444556666666666655544
No 66
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=35.75 E-value=37 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCC-CcchhHHHHHHHHh
Q 033355 20 ADDIKGILGSVGA-DCEDNRLELLLSEV 46 (121)
Q Consensus 20 ae~I~kIl~AaGv-eVd~~~~~~f~~~L 46 (121)
+.-|..||++.|+ ++++..+..|...+
T Consensus 4 a~~i~~iLk~~G~~~~~~~v~~~L~e~~ 31 (68)
T 1taf_A 4 AQVIMSILKELNVQEYEPRVVNQLLEFT 31 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcccCHHHHHHHHHHH
Confidence 4458899999999 79999999888876
No 67
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=35.47 E-value=78 Score=20.04 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=18.6
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchh
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCEDN 37 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd~~ 37 (121)
...|...|+.+.|.+|.+..|++++..
T Consensus 61 iE~G~~~ps~~~l~~ia~~l~v~~~~l 87 (99)
T 3g5g_A 61 IERNSRNLTIKSLELIMKGLEVSDVVF 87 (99)
T ss_dssp HHTTCSCCBHHHHHHHHHHTTCCHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 344656678888888888777776553
No 68
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=35.39 E-value=48 Score=19.10 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=13.6
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcc
Q 033355 13 GGNTSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd 35 (121)
.|+..|+.+.+.+|.+..|++++
T Consensus 45 ~g~~~~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 45 RGDRNISLINIHKICAALDIPAS 67 (77)
T ss_dssp TTCSCCBHHHHHHHHHHTTCCHH
T ss_pred CCCCCCCHHHHHHHHHHhCcCHH
Confidence 34445666666666666665544
No 69
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.32 E-value=52 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=9.6
Q ss_pred hhHHHHHHHHhCCCChHHHHH
Q 033355 36 DNRLELLLSEVKGKDITELIA 56 (121)
Q Consensus 36 ~~~~~~f~~~L~gk~i~eLI~ 56 (121)
...+..+++.| |.+++.|+.
T Consensus 47 ~~~l~~ia~~l-~~~~~~l~~ 66 (76)
T 1adr_A 47 GENLLALSKAL-QCSPDYLLK 66 (76)
T ss_dssp HHHHHHHHHHT-TSCHHHHHH
T ss_pred HHHHHHHHHHH-CcCHHHHhc
Confidence 33444444444 455555554
No 70
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=34.36 E-value=24 Score=20.50 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcC-CCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVG-ADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaG-veVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-++-..|+-.|+.+++..++...| ..+....+..+++.+.. .+.++.+.
T Consensus 13 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~ 69 (81)
T 1c7v_A 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69 (81)
T ss_dssp HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 33344334445689999999999999 88888888877777642 34555543
No 71
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=34.31 E-value=67 Score=20.88 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCC-CcchhHHHHHHHHhC----C-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGA-DCEDNRLELLLSEVK----G-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGv-eVd~~~~~~f~~~L~----g-k~i~eLI~ 56 (121)
++-++-..|+-.||.+++..++...|. .+....+..+++.+. | .+.++.+.
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 101 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCV 101 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 444444445667999999999999996 888888888887774 1 46677665
No 72
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=34.02 E-value=34 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
|+-++-..|+-.||.++++.+|...|..+...-+..+++.+.
T Consensus 90 aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D 131 (153)
T 3i5g_B 90 AFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAP 131 (153)
T ss_dssp HHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCC
T ss_pred HHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhC
Confidence 344443446667999999999999998888777777666553
No 73
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=33.34 E-value=71 Score=18.79 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=15.1
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcch
Q 033355 13 GGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
.|+..|+.+.+.+|.+..|++++.
T Consensus 49 ~g~~~~~~~~l~~l~~~l~~~~~~ 72 (83)
T 3f6w_A 49 NAERRLDVIEFMDFCRGIGTDPYA 72 (83)
T ss_dssp TTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHH
Confidence 455557777777777776665543
No 74
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.98 E-value=67 Score=19.56 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=21.3
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHH
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLE 40 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~ 40 (121)
..|+..|+.+.+.+|.+..|++++ +|+.
T Consensus 42 e~g~~~~~~~~~~~i~~~l~v~~~-~~l~ 69 (94)
T 2ict_A 42 LTGKAALTPEMAIKLSVVIGSSPQ-MWLN 69 (94)
T ss_dssp HHTSSCCCHHHHHHHHHHTCSCHH-HHHH
T ss_pred HcCCCCCCHHHHHHHHHHHCcCHH-HHHH
Confidence 446667999999999999998774 4654
No 75
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=32.92 E-value=53 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=28.1
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
.++-.||.+++..++...|..+....+..+++.+.
T Consensus 91 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 91 EGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE 125 (142)
T ss_dssp SSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC
T ss_pred CCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 34556999999999999998888888877777764
No 76
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=32.82 E-value=64 Score=22.14 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
.+-.+-..|+-.||.+++..+|...|..+....+..++..+.| .++.+.+.
T Consensus 62 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~ 113 (196)
T 3dtp_E 62 AFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLT 113 (196)
T ss_dssp HHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHH
Confidence 3444434455679999999999999999888888877776655 56677665
No 77
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.77 E-value=44 Score=19.63 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHH
Q 033355 18 PSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA 56 (121)
Q Consensus 18 ~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~ 56 (121)
++...|.++.+-- ..+....+..+++.| |.++++|+.
T Consensus 27 is~~~i~~~e~g~-~~p~~~~l~~ia~~l-~v~~~~l~~ 63 (77)
T 2k9q_A 27 ISRQQLCNIEQSE-TAPVVVKYIAFLRSK-GVDLNALFD 63 (77)
T ss_dssp SCHHHHHHHHTCC-SCCHHHHHHHHHHHT-TCCHHHHHH
T ss_pred CCHHHHHHHHcCC-CCCCHHHHHHHHHHh-CcCHHHHhC
Confidence 4445555544421 223334445555554 566667765
No 78
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=32.24 E-value=77 Score=19.00 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=21.5
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchhHH
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCEDNRL 39 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd~~~~ 39 (121)
...|+..|+.+.+.+|.+..|++++....
T Consensus 50 ~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 50 LFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred HHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence 34566678888888888888887776543
No 79
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=31.77 E-value=69 Score=20.24 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=19.8
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcc
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd 35 (121)
...|+..|+.+.+.+|.+..|++++
T Consensus 44 ~e~g~~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 44 LINNNRKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 3456667899999999998888876
No 80
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=31.74 E-value=88 Score=20.02 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
.+-.+-..|+-.||.+++..+|...|..+....+..+.+.-.| .+..+.+.
T Consensus 23 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~ 74 (156)
T 1wdc_B 23 AFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLS 74 (156)
T ss_dssp HHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTTSSSCCCHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcCcHHHHHH
Confidence 3344444455679999999999999988877776666654333 46666664
No 81
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=31.26 E-value=83 Score=21.04 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-k~i~eLI~ 56 (121)
++-++-..|+-.||.+++..+|++.|..+.......+.....+ .+..+.+.
T Consensus 21 ~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~ 72 (153)
T 3i5g_B 21 AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLT 72 (153)
T ss_dssp HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHH
Confidence 3444444455579999999999999998888777766665543 34455554
No 82
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=31.17 E-value=52 Score=21.26 Aligned_cols=45 Identities=16% Similarity=0.389 Sum_probs=33.7
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHH--HhC----C-CChHHHHH
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLS--EVK----G-KDITELIA 56 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~--~L~----g-k~i~eLI~ 56 (121)
..|+-.||.+++..+|...|..+....+..+++ .+. | .+.++.+.
T Consensus 96 ~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 147 (159)
T 2ovk_C 96 REGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp TTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCTTCCEEHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCCcEeHHHHHH
Confidence 345556999999999999999988888888888 442 1 35666664
No 83
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=31.17 E-value=95 Score=19.77 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=36.0
Q ss_pred HHHHHhcC-CCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGG-NTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G-~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-.+-..| +-.+|.+++..++...|..+....+..+.+.+.. .+.++.+.
T Consensus 24 F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~ 79 (161)
T 1dtl_A 24 FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLV 79 (161)
T ss_dssp HHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred HHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 33333345 5569999999999999998888888877777742 46667665
No 84
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=30.99 E-value=1e+02 Score=19.60 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=28.9
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
..++-.+|.+++..++...|..+....+..+++.+
T Consensus 107 ~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~ 141 (162)
T 1top_A 107 KNADGFIDIEELGEILRATGEHVTEEDIEDLMKDS 141 (162)
T ss_dssp TTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34555699999999999999888888888777776
No 85
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=30.83 E-value=83 Score=20.35 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=23.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHH
Q 033355 8 LLAVLGGNTSPSADDIKGILGSVGADCEDNRLE 40 (121)
Q Consensus 8 lLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~ 40 (121)
+--+..|+..||.+.+.+|.+..|+.++ +|+.
T Consensus 44 is~ie~G~~~~s~~~~~kla~~lgvs~~-~ll~ 75 (104)
T 3trb_A 44 VTAILNGARSITADTALRLAKFFGTTPE-FWLN 75 (104)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHHTCCHH-HHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHCcCHH-HHhC
Confidence 3344567778999999999999999864 4443
No 86
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=30.31 E-value=37 Score=18.67 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=27.5
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
..|+-.+|.+++..+++..|..+....+..+.+.+
T Consensus 11 ~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 45 (66)
T 3li6_A 11 VNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSI 45 (66)
T ss_dssp TTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 34556799999999999998777777777776666
No 87
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=30.13 E-value=91 Score=20.17 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-++-..|+-.||.+++..++...|..+....+..+++.+.. .+.++.+.
T Consensus 101 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~ 155 (166)
T 2mys_B 101 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICY 155 (166)
T ss_pred HHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHH
Confidence 333334455569999999999999988888777777776632 34555554
No 88
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=30.12 E-value=56 Score=22.28 Aligned_cols=34 Identities=6% Similarity=0.150 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
.++-.||.+++..++...|..+....+..+++.+
T Consensus 115 d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~ 148 (198)
T 1juo_A 115 DRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148 (198)
T ss_dssp TCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3455699999999999999988888888887777
No 89
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=30.01 E-value=67 Score=19.51 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L 46 (121)
++-++-..++-.|+.+++..++... |..+....+..+++.+
T Consensus 46 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 46 AFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp HHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3444444455568999999999988 7777777777777666
No 90
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=29.98 E-value=98 Score=19.63 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
.+-..++-.+|.+++..+|...|.......+..+.+.+.. .+.++.+.
T Consensus 31 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 83 (161)
T 3fwb_A 31 LFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYI 83 (161)
T ss_dssp HHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHH
Confidence 3333455568999999999999998888888877777632 44566654
No 91
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=29.92 E-value=72 Score=19.32 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L 46 (121)
++-++-..|+-.||.+++..++... |..+....+..+++.+
T Consensus 46 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 46 VFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp HHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3344444455568999999999988 7777777777777666
No 92
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=29.48 E-value=85 Score=18.83 Aligned_cols=39 Identities=3% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
++-++-..|+-.|+.+++..+|...| +....+..+++.+
T Consensus 32 ~F~~~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~ 70 (91)
T 2pmy_A 32 VFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRL 70 (91)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcC--cCHHHHHHHHHHh
Confidence 44444445566799999999999998 3455556666555
No 93
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=29.04 E-value=71 Score=20.01 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-.+-..++-.+|.+++..+|...|..+....+..+.+.+.. .+..+.+.
T Consensus 12 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 66 (142)
T 2bl0_C 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLS 66 (142)
T ss_dssp HHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHH
Confidence 333333455568889999999888888887777777776632 35566654
No 94
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=28.94 E-value=60 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSV 30 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~Aa 30 (121)
.|||+.+-. .+.|.++|.+|+.+.
T Consensus 58 P~LLA~~~~-~~~t~~~l~~li~s~ 81 (130)
T 2jd3_A 58 PVLLTAILS-EEFSADQVVTLLSQT 81 (130)
T ss_dssp HHHHHHHCS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 477888663 358999999998765
No 95
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=28.85 E-value=74 Score=20.33 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
+-.+-..|+-.||.+++..++...|..+....+..+++.+
T Consensus 97 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 97 FRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEI 136 (158)
T ss_dssp HHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHh
Confidence 3333334555699999999999999888888788777776
No 96
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=28.67 E-value=78 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=13.9
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcch
Q 033355 13 GGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
.|+..|+.+.+.+|.+..|++++.
T Consensus 63 ~g~~~~~~~~l~~la~~l~v~~~~ 86 (117)
T 3f52_A 63 RGRKEVSSELLASVCHALGASVAD 86 (117)
T ss_dssp TTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCHHH
Confidence 344456666666666666655543
No 97
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.67 E-value=72 Score=19.36 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHhC
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEVK 47 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L~ 47 (121)
+-++-..++-.|+.+++.+++... |..+....+..+++.+.
T Consensus 48 F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d 91 (110)
T 1pva_A 48 FKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD 91 (110)
T ss_dssp HHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHC
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC
Confidence 333434455568999999999998 77777777777777663
No 98
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=28.61 E-value=68 Score=19.14 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=12.6
Q ss_pred CCCCCHHHHHHHHHhcCCCcc
Q 033355 15 NTSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 15 ~~~~Tae~I~kIl~AaGveVd 35 (121)
...|+.+.|.+|.+..|++++
T Consensus 48 ~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 48 QTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp CCCCBHHHHHHHHHHHTCCHH
T ss_pred CCCCCHHHHHHHHHHHCcCHH
Confidence 445666666666666665543
No 99
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=28.32 E-value=1.1e+02 Score=19.94 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCC-----CcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 4 VAAYLLAVLGGNTSPSADDIKGILGSVGA-----DCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 4 vaAYlLl~l~G~~~~Tae~I~kIl~AaGv-----eVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-++-.+-..++-.+|.+++..++...|. ......+..+.+.+.. .+.++.+.
T Consensus 4 ~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~ 66 (167)
T 1gjy_A 4 LYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKE 66 (167)
T ss_dssp THHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHH
T ss_pred HHHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence 34455555556667899999999999887 4566666666666531 45556543
No 100
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=28.26 E-value=91 Score=19.87 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
+-++-..|+-.|+.+++..+|++.|..+....+..+++.+
T Consensus 16 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 55 (148)
T 1exr_A 16 FALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 55 (148)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3333334555688899999999888887777666666655
No 101
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=28.03 E-value=1.2e+02 Score=19.99 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=36.6
Q ss_pred HHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchhHHHHHHHHhC----C-CChHHHHH
Q 033355 4 VAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVK----G-KDITELIA 56 (121)
Q Consensus 4 vaAYlLl~-l~G~~-~~Tae~I~kIl~A-----aGveVd~~~~~~f~~~L~----g-k~i~eLI~ 56 (121)
.-+|-++- ..|+- .||.++++.+|.. .|.......+..+++.+. | .++++.+.
T Consensus 25 ~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~ 89 (113)
T 2lnk_A 25 VSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 89 (113)
T ss_dssp HHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHH
T ss_pred HHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 34555554 33433 6999999999987 677777777887777773 1 56777764
No 102
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=27.53 E-value=79 Score=19.19 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L 46 (121)
++-++-..++-.||.+++..++... |..+....+..+++.+
T Consensus 47 ~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 47 AFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp HHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 3444444455568999999999988 6777777777777666
No 103
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=27.39 E-value=71 Score=19.33 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCcch
Q 033355 14 GNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
|+..|+.+.+.+|.+..|++++.
T Consensus 49 g~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 49 GRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp TCSCCCHHHHHHHHHHHTBCCSS
T ss_pred CCCCCCHHHHHHHHHHHCcCHHH
Confidence 44456666666666666665554
No 104
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=27.37 E-value=92 Score=17.81 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhcC--CCcchhHHHH----HHHHhC----C-CChHHHHH
Q 033355 5 AAYLLAVLGGNTSPSADDIKGILGSVG--ADCEDNRLEL----LLSEVK----G-KDITELIA 56 (121)
Q Consensus 5 aAYlLl~l~G~~~~Tae~I~kIl~AaG--veVd~~~~~~----f~~~L~----g-k~i~eLI~ 56 (121)
.++-++-..|+-.++.+++..++...| ..+....+.. +.+.+. | .+.++.+.
T Consensus 11 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~ 73 (83)
T 1yx7_A 11 AAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLN 73 (83)
T ss_dssp HHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 344444445666799999999999999 6766666666 555542 1 35556554
No 105
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=27.24 E-value=79 Score=19.68 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=33.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
.+-..++-.+|.+++.+++...|.......+..+.+.+.. .+.++.+.
T Consensus 19 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 71 (147)
T 4ds7_A 19 LFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLA 71 (147)
T ss_dssp HHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHH
T ss_pred HHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence 3333345568999999999999988888877777776631 34555553
No 106
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=26.77 E-value=81 Score=19.14 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L 46 (121)
+-++-..|+-.|+.+++..++... |..+....+..+++.+
T Consensus 48 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 48 FGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 334434455668999999999988 7777777777777666
No 107
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=26.65 E-value=66 Score=21.95 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.6
Q ss_pred HHHHHHhcCCC-CCCHHHHHHHHHhcCCCcchhH
Q 033355 6 AYLLAVLGGNT-SPSADDIKGILGSVGADCEDNR 38 (121)
Q Consensus 6 AYlLl~l~G~~-~~Tae~I~kIl~AaGveVd~~~ 38 (121)
+|+--+-.|+. .||.+.+.+|.+.-||.++-.+
T Consensus 46 s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~yl~ 79 (135)
T 3r1f_A 46 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYFT 79 (135)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHHHc
Confidence 45555556765 7999999999999999987655
No 108
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.49 E-value=47 Score=20.11 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHhcCCCcch
Q 033355 18 PSADDIKGILGSVGADCED 36 (121)
Q Consensus 18 ~Tae~I~kIl~AaGveVd~ 36 (121)
++.+.|+++|++.+.+||.
T Consensus 23 ld~~~I~~vL~a~~gdvd~ 41 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDA 41 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHH
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 3444455555555555444
No 109
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=26.46 E-value=48 Score=20.58 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
|+-.|+.+++..++...|..+....+..+.+.+.. .+.++.+.
T Consensus 45 ~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~ 92 (107)
T 2d58_A 45 GNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLR 92 (107)
T ss_dssp TTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 45569999999999999998888888877777631 35666654
No 110
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=26.16 E-value=56 Score=20.45 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
.++-.+|.+++..++...|..+....+..+++.+.
T Consensus 88 d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d 122 (145)
T 2bl0_B 88 EGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVS 122 (145)
T ss_dssp SSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC
T ss_pred CCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 44556999999999999998888888887777764
No 111
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=26.14 E-value=59 Score=21.62 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC-----CCChHHHHH
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~-----gk~i~eLI~ 56 (121)
++-.||.+++..+|...|..+....+..+++.+. ..++++.+.
T Consensus 63 ~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~ 110 (150)
T 2jjz_A 63 NEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVN 110 (150)
T ss_dssp TTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHH
T ss_pred CcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHH
Confidence 4456999999999999998888877777777763 146777664
No 112
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.10 E-value=97 Score=18.90 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHhcCCCcchhHHHHHHHHhCCCChHHHHH
Q 033355 18 PSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIA 56 (121)
Q Consensus 18 ~Tae~I~kIl~AaGveVd~~~~~~f~~~L~gk~i~eLI~ 56 (121)
++...|.++.+- ........+..+++.| |.++++|+.
T Consensus 34 is~~~is~~e~G-~~~p~~~~l~~ia~~l-~v~~~~l~~ 70 (94)
T 2kpj_A 34 VSPQTFNTWCKG-IAIPRMGKVQALADYF-NINKSDLIE 70 (94)
T ss_dssp CCHHHHHHHHTT-SCCCCHHHHHHHHHHH-TCCTHHHHS
T ss_pred cCHHHHHHHHhC-CCCCCHHHHHHHHHHH-CcCHHHHhc
Confidence 344444444432 1233444455555555 567777775
No 113
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=26.09 E-value=92 Score=22.02 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=30.9
Q ss_pred HHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 10 AVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 10 l~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
+-..|+-.+|.+++..+++..|..+.......+++.+.
T Consensus 126 ~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d 163 (220)
T 3sjs_A 126 NARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA 163 (220)
T ss_dssp HCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC
T ss_pred HCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 33345566999999999999999998888888888775
No 114
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=26.07 E-value=1.1e+02 Score=19.77 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 8 LLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 8 lLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
-.+-..|+-.+|.+++..+|...|.......+..+.+.+.. .+.++.+.
T Consensus 35 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 88 (169)
T 3qrx_A 35 DLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLT 88 (169)
T ss_dssp HHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred HHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 33333455568999999999999998888888877777732 34566654
No 115
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=25.79 E-value=76 Score=20.92 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHHh
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIAS 57 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~~ 57 (121)
++-.+-..|+-.||.+++.+++...|..+....+..+++.+.. .+.++.+..
T Consensus 114 ~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~ 170 (191)
T 1uhk_A 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQ 170 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHH
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 4444444455679999999999999998888888888888742 356676653
No 116
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=25.52 E-value=35 Score=21.54 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
|+-.||.+++..++...|..+....+..+++.+
T Consensus 89 ~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 89 ASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp SCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred CCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 455689999999999999888888888777777
No 117
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=25.39 E-value=93 Score=18.83 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHhc---CCCcchhHHHHHHHHh
Q 033355 9 LAVLGGNTSPSADDIKGILGSV---GADCEDNRLELLLSEV 46 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~Aa---GveVd~~~~~~f~~~L 46 (121)
++-..|+-.|+.+++..++... |..+....+..+.+.+
T Consensus 49 ~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp HHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3333455568899999999888 8887777777666665
No 118
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.30 E-value=81 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=18.8
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033355 12 LGGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
..|...|+.+.+.+|.+..|++++.
T Consensus 46 E~g~~~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 46 ENKGQHPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp HHSCCCCCHHHHHHHHHHHTCCSHH
T ss_pred HCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3456668888888888888887754
No 119
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.24 E-value=1e+02 Score=18.92 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 3 VVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 3 yvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
|..++-++-..|+-.||.+++..++...|.. ...+..+.+.+
T Consensus 12 ~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~--~~~~~~i~~~~ 53 (95)
T 1c07_A 12 YDEIFLKTDKDMDGFVSGLEVREIFLKTGLP--STLLAHIWSLC 53 (95)
T ss_dssp HHHHHHHHCTTCSSEECHHHHHHHHHTTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 4556666655566679999999999998854 44455555544
No 120
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=25.19 E-value=1.4e+02 Score=20.20 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+-.+-..|+-.||.+++..++...|..+....+..+++.+.. .+.++.+.
T Consensus 99 F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~ 153 (191)
T 1y1x_A 99 FRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVE 153 (191)
T ss_dssp HHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 333333455679999999999999998888888888877742 45666654
No 121
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=25.14 E-value=67 Score=20.62 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=31.7
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC---C-CChHHHHH
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK---G-KDITELIA 56 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~---g-k~i~eLI~ 56 (121)
.|+-.||.+++..++...|..+....+..+++.+. | .++++.+.
T Consensus 99 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~i~~~eF~~ 146 (156)
T 1wdc_B 99 QETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVKFTA 146 (156)
T ss_dssp TCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTEECHHHHHH
T ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCEEeHHHHHH
Confidence 34556899999999999998888877777777663 2 45555554
No 122
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=25.03 E-value=79 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHHHhcCCC-CCCHHHHHHHHHhcCCCcchhHH
Q 033355 6 AYLLAVLGGNT-SPSADDIKGILGSVGADCEDNRL 39 (121)
Q Consensus 6 AYlLl~l~G~~-~~Tae~I~kIl~AaGveVd~~~~ 39 (121)
.|+--+-.|+. +||.+.+++|.+.-||.++-...
T Consensus 44 s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~~ 78 (123)
T 3qwg_A 44 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD 78 (123)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHcC
Confidence 45555556764 79999999999999999876543
No 123
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=25.03 E-value=89 Score=20.58 Aligned_cols=44 Identities=9% Similarity=0.302 Sum_probs=32.0
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC----CChHHHH
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG----KDITELI 55 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g----k~i~eLI 55 (121)
..|+-.+|.+++..++...|..+....+..+.+.+.+ .+.++.+
T Consensus 88 ~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~dd~dg~i~~~eF~ 135 (173)
T 1alv_A 88 VDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFI 135 (173)
T ss_dssp TTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHTCSSSCBCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCcCcHHHHH
Confidence 3455569999999999999998888777777776642 3445554
No 124
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.85 E-value=1.1e+02 Score=19.20 Aligned_cols=53 Identities=19% Similarity=0.106 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC--C---CChHHHHH
Q 033355 2 KVVAAYLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK--G---KDITELIA 56 (121)
Q Consensus 2 kyvaAYlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~--g---k~i~eLI~ 56 (121)
+|-.+|-++-..|+-.||.+++..+++..|+. ...+..+.+.+. | .+.++.+.
T Consensus 12 ~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~--~~~l~~i~~~~D~d~dG~i~~~EF~~ 69 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP--DLILGKIWDLADTDGKGVLSKQEFFV 69 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC--HHHHHHHHHHHCCSSSSSCCSHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC--HHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence 35556666665666679999999999999864 445565565553 1 46677654
No 125
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=24.58 E-value=1.5e+02 Score=19.28 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=34.8
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC-----CCChHHHHH
Q 033355 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~-----gk~i~eLI~ 56 (121)
.+-..|+-.+|.+++..+|...|..+....+..+.+.+. ..+.++.+.
T Consensus 19 ~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~ 71 (179)
T 2f2o_A 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71 (179)
T ss_dssp HHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHH
Confidence 333345556999999999999999888887777777763 245666654
No 126
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=24.51 E-value=83 Score=20.07 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=35.0
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHHh
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIAS 57 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~~ 57 (121)
.++-.+|.+++.++|...|.......+..+.+.+.. .+..+.+..
T Consensus 26 ~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~ 75 (158)
T 2jnf_A 26 EGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKII 75 (158)
T ss_dssp SSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 355569999999999999999888888888877732 567777763
No 127
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.44 E-value=61 Score=19.81 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=14.7
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhH
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNR 38 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~ 38 (121)
.|+..|+.+.+.+|.+..|..|...|
T Consensus 39 ~g~~~p~~~~l~~ia~~l~~~v~~~~ 64 (99)
T 2l49_A 39 SGRSTPPTDVMMNILQTPQFTKYTLW 64 (99)
T ss_dssp TTSSCCCHHHHHHHHSSSSSSSSSST
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 35455677777777776444444333
No 128
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=24.41 E-value=1.4e+02 Score=19.04 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 9 LAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 9 Ll~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
.+-..|+-.+|.+++..++...|..+....+..+.+.+.. .+..+.+.
T Consensus 35 ~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 87 (166)
T 2aao_A 35 MIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIA 87 (166)
T ss_dssp HHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHH
T ss_pred HhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 3333455679999999999999998888777777777631 45667664
No 129
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=24.11 E-value=61 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhc----CCCcchhHHHHHHHHhC
Q 033355 5 AAYLLAVLGGNTSPSADDIKGILGSV----GADCEDNRLELLLSEVK 47 (121)
Q Consensus 5 aAYlLl~l~G~~~~Tae~I~kIl~Aa----GveVd~~~~~~f~~~L~ 47 (121)
.++-++- .|+-.||.++++.+|+.. |..+....+..+++.+.
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d 125 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS 125 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc
Confidence 3444555 555568999999999998 88888777777776664
No 130
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=24.00 E-value=1.3e+02 Score=18.28 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHh-----cCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 17 SPSADDIKGILGS-----VGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 17 ~~Tae~I~kIl~A-----aGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
.||.++++.+++. .|.......+..+++.+.- .++++.+.
T Consensus 27 ~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~ 76 (92)
T 3rm1_A 27 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMA 76 (92)
T ss_dssp SBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred eECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHH
Confidence 6999999999999 8988888888888887732 35666553
No 131
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=23.92 E-value=37 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=27.7
Q ss_pred cCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 13 GGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 13 ~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
.|+-.||.+++..++...|..+....+..+++.+.
T Consensus 99 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d 133 (151)
T 1w7j_B 99 EGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE 133 (151)
T ss_dssp TSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC
T ss_pred CCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 34456899999999999998888877777776664
No 132
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.82 E-value=1.1e+02 Score=18.87 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=21.9
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcchh
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCEDN 37 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd~~ 37 (121)
...|...|+.+.+.+|.+..|++++..
T Consensus 38 ~E~g~~~p~~~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 38 YEKGKHAPDFEMANRLAKVLKIPVSYL 64 (98)
T ss_dssp HHHTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 344667799999999999999988754
No 133
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=23.63 E-value=46 Score=19.80 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHHhcCCCcc
Q 033355 16 TSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 16 ~~~Tae~I~kIl~AaGveVd 35 (121)
..|+.+.+.+|.+..|++++
T Consensus 50 ~~~~~~~l~~i~~~l~~~~~ 69 (88)
T 2wiu_B 50 DNTTLTTFFKILQSLELSMT 69 (88)
T ss_dssp GGCBHHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHhCCCHH
Confidence 34555555555555544443
No 134
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=23.54 E-value=53 Score=21.84 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 14 GNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 14 G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
++-.|+.+++..+|...|..+....+..+++.+.. .+.++.+.
T Consensus 61 ~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~ 108 (147)
T 1wy9_A 61 GNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLR 108 (147)
T ss_dssp TTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHH
T ss_pred CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 44568999999999999988888888877777741 36666664
No 135
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=23.47 E-value=83 Score=20.08 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=16.7
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcch
Q 033355 12 LGGNTSPSADDIKGILGSVGADCED 36 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~ 36 (121)
..|+..|+.+.+.+|.+..|++++.
T Consensus 55 E~G~~~p~~~~l~~ia~~l~v~~~~ 79 (114)
T 3vk0_A 55 ERKRWNIALSNIEKMAAALGVAAYQ 79 (114)
T ss_dssp TTTCCCCCHHHHHHHHHHHTSCHHH
T ss_pred HcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 3455567777777777777776543
No 136
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=23.47 E-value=1.6e+02 Score=19.08 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCC-----CcchhHHHHHHHHhCC-----CChHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSVGA-----DCEDNRLELLLSEVKG-----KDITELI 55 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~AaGv-----eVd~~~~~~f~~~L~g-----k~i~eLI 55 (121)
++-.+-..|+-.+|.+++.+++.+.|. .+....+..+.+.+.. .+.++.+
T Consensus 4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~ 63 (165)
T 1k94_A 4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFK 63 (165)
T ss_dssp HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence 344444455556888889999888887 4555666666666521 3555554
No 137
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.96 E-value=86 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.5
Q ss_pred HhcCCCCCCHHHHHHHHHhcCCCcc
Q 033355 11 VLGGNTSPSADDIKGILGSVGADCE 35 (121)
Q Consensus 11 ~l~G~~~~Tae~I~kIl~AaGveVd 35 (121)
...|+..|+.+.+.+|.+..|++++
T Consensus 51 ~e~g~~~~~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 51 VINGQRSITVDIAIRLGKALGNGPR 75 (104)
T ss_dssp HHTTSSCCCHHHHHHHHHHHTSCHH
T ss_pred HHcCCcCCCHHHHHHHHHHHCcCHH
Confidence 4456667889999999998888774
No 138
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.79 E-value=1e+02 Score=18.20 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHhcCCC
Q 033355 17 SPSADDIKGILGSVGAD 33 (121)
Q Consensus 17 ~~Tae~I~kIl~AaGve 33 (121)
.|+.+.+.+|.+..|++
T Consensus 54 ~p~~~~l~~ia~~l~v~ 70 (86)
T 2ofy_A 54 TPAFFTIAAVARVLDLS 70 (86)
T ss_dssp SCBHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 35555555555554444
No 139
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=22.64 E-value=1.1e+02 Score=18.42 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHh-cCCC-CCCHHHHHHHH-HhcCCCcchhHHHHHHHHh
Q 033355 4 VAAYLLAVL-GGNT-SPSADDIKGIL-GSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 4 vaAYlLl~l-~G~~-~~Tae~I~kIl-~AaGveVd~~~~~~f~~~L 46 (121)
..++-++-. .|+- .|+.+++..++ +..|..+....+..+++.+
T Consensus 13 ~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~ 58 (93)
T 1xk4_A 13 IDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKEL 58 (93)
T ss_dssp HHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHh
Confidence 345555555 5655 79999999999 7777544444445555555
No 140
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=22.01 E-value=1.3e+02 Score=20.29 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc-CCCcchhHHHHHHHH----hC----C-CChHHHHH
Q 033355 6 AYLLAVLGGNTSPSADDIKGILGSV-GADCEDNRLELLLSE----VK----G-KDITELIA 56 (121)
Q Consensus 6 AYlLl~l~G~~~~Tae~I~kIl~Aa-GveVd~~~~~~f~~~----L~----g-k~i~eLI~ 56 (121)
++-++-..|+-.||.+++..++... |..+....+..+++. +. | .++++.+.
T Consensus 119 ~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~ 179 (202)
T 2bec_A 119 AFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179 (202)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence 3444444555579999999999999 998888888877776 53 1 46677775
No 141
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=21.95 E-value=1.4e+02 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=28.8
Q ss_pred hcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 12 LGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 12 l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
..++-.+|.+++..++...|..+....+..+.+.+.
T Consensus 85 ~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 120 (172)
T 2znd_A 85 RDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD 120 (172)
T ss_dssp TTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred CCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 345556999999999999998888888877777763
No 142
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=21.68 E-value=1.6e+02 Score=18.44 Aligned_cols=54 Identities=13% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHHHH-hcCCC-CCCHHHHHHHHHh-----cCCCcchhHHHHHHHHhCC-----CChHHHHH
Q 033355 3 VVAAYLLAV-LGGNT-SPSADDIKGILGS-----VGADCEDNRLELLLSEVKG-----KDITELIA 56 (121)
Q Consensus 3 yvaAYlLl~-l~G~~-~~Tae~I~kIl~A-----aGveVd~~~~~~f~~~L~g-----k~i~eLI~ 56 (121)
+.-++-++- ..|+- .||.++++.++.. .|.......+..+++.+.. .++++.+.
T Consensus 12 l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~ 77 (99)
T 2y5i_A 12 LITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVV 77 (99)
T ss_dssp HHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred HHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence 344555664 33433 6999999999987 5667777778877777631 45666654
No 143
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.31 E-value=1.2e+02 Score=18.16 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=17.7
Q ss_pred hcCCC-CCCHHHHHHHHHhcCCCcc
Q 033355 12 LGGNT-SPSADDIKGILGSVGADCE 35 (121)
Q Consensus 12 l~G~~-~~Tae~I~kIl~AaGveVd 35 (121)
..|+. .|+.+.+.+|++..|++++
T Consensus 52 e~g~~~~~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 52 MRGKIDLFSLESLIDMITSIGLKVE 76 (83)
T ss_dssp HTTCGGGCCHHHHHHHHHHTTCCCC
T ss_pred HcCCCCCCCHHHHHHHHHHcCCCeE
Confidence 44554 4888888888888888776
No 144
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=21.17 E-value=74 Score=21.12 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhCC-----CChHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKG-----KDITELIAS 57 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~g-----k~i~eLI~~ 57 (121)
+-.+-..|+-.||.+++..++...|..+....+..+++.+.. .+.++.+..
T Consensus 119 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~ 174 (195)
T 1qv0_A 119 FDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQ 174 (195)
T ss_dssp HHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHH
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHH
Confidence 333333455569999999999999999888888888888742 356777653
No 145
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.02 E-value=82 Score=21.56 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHh
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEV 46 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L 46 (121)
+-++-..|+-.||.+++..+|.+.|..+....+..+.+.+
T Consensus 17 F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~ 56 (176)
T 2lhi_A 17 FALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEI 56 (176)
T ss_dssp HHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTT
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 3333334555689999999999999988887777666655
No 146
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=20.97 E-value=1.6e+02 Score=18.26 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC-----CCChHHHHH
Q 033355 7 YLLAVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVK-----GKDITELIA 56 (121)
Q Consensus 7 YlLl~l~G~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~-----gk~i~eLI~ 56 (121)
+-.+-..++-.+|.+++..+|...|.......+..+.+.+. ..+.++.+.
T Consensus 17 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 71 (153)
T 3ox6_A 17 FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVE 71 (153)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHH
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHH
Confidence 34444445557999999999999999888877777777662 255677765
No 147
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=20.09 E-value=1.7e+02 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHhcCCCcchhHHHHHHHHhC
Q 033355 15 NTSPSADDIKGILGSVGADCEDNRLELLLSEVK 47 (121)
Q Consensus 15 ~~~~Tae~I~kIl~AaGveVd~~~~~~f~~~L~ 47 (121)
+.-.|.+++...|+..|++|-...+...++.|.
T Consensus 17 ~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~ 49 (149)
T 1b4a_A 17 NDIETQDELVDRLREAGFNVTQATVSRDIKEMQ 49 (149)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcC
Confidence 445899999999999999999999999999873
Done!