BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033356
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
          Length = 108

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 22  CNSGEYTHGDPFAISLAYVLADLETVTSASK-DYDYYNISPYPNAFAYGHAACNKNLTSP 80
           CN+ +   G PF  +L  +LADL   T+ S  DY            AYG A C ++++  
Sbjct: 10  CNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQS 69

Query: 81  DCTSCLGAAKTAMLGSCPSRIGSRSVLHDCKIRYEQYPF 119
           DCT+CL      +   C + IG+R  L DC I+YEQ  F
Sbjct: 70  DCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 37  LAYVLADLETVTSASKDYDYYNISPYPNAFAYGHAACNKNLTSP 80
           LAY++++ ++V   +++     I   PNA A GH     N+T P
Sbjct: 213 LAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGP 256


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 37  LAYVLADLETVTSASKDYDYYNISPYPNAFAYGHAACNKNLTSP 80
           LAY++++ ++V   +++     I   PNA A GH     N+T P
Sbjct: 213 LAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGP 256


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 37  LAYVLADLETVTSASKDYDYYNISPYPNAFAYGHAACNKNLTSP 80
           LAY++++ ++V   +++     I   PNA A GH     N+T P
Sbjct: 214 LAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGP 257


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 37  LAYVLADLETVTSASKDYDYYNISPYPNAFAYGHAACNKNLTSP 80
           LAY++++ ++V   +++     I   PNA A GH     N+T P
Sbjct: 257 LAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGP 300


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,321,403
Number of Sequences: 62578
Number of extensions: 113015
Number of successful extensions: 219
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 8
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)