Query 033356
Match_columns 121
No_of_seqs 116 out of 1061
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 100.0 2.8E-30 6.1E-35 167.0 9.7 101 19-119 1-106 (106)
2 KOG0862 Synaptobrevin/VAMP-lik 26.3 2.6E+02 0.0057 20.4 6.2 81 31-116 31-118 (216)
3 PHA00008 J DNA packaging prote 20.3 65 0.0014 15.1 0.9 11 99-109 11-21 (26)
4 PF06844 DUF1244: Protein of u 16.7 82 0.0018 18.6 1.0 10 80-89 11-20 (68)
5 PF04726 Microvir_J: Microviru 15.2 62 0.0013 14.9 0.2 11 99-109 10-20 (24)
6 COG1913 Predicted Zn-dependent 15.2 1.4E+02 0.003 21.1 2.1 17 78-94 161-177 (181)
7 COG2906 Bfd Bacterioferritin-a 14.1 1.5E+02 0.0033 17.2 1.7 15 80-94 36-50 (63)
8 PF13923 zf-C3HC4_2: Zinc fing 13.7 1E+02 0.0023 15.3 0.9 17 81-98 21-37 (39)
9 PF14569 zf-UDP: Zinc-binding 13.1 1.2E+02 0.0027 18.4 1.2 29 78-116 35-63 (80)
10 PF06906 DUF1272: Protein of u 12.2 1.5E+02 0.0032 16.9 1.2 20 81-103 31-50 (57)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.97 E-value=2.8e-30 Score=166.98 Aligned_cols=101 Identities=30% Similarity=0.596 Sum_probs=75.5
Q ss_pred eeecC---CCcC-CCCchHHHHHHHHHHHHHHhccCCCCceeeEeC-CCCCccEEEEEEcCCCCChHhHHHHHHHHHHHh
Q 033356 19 NVLCN---SGEY-THGDPFAISLAYVLADLETVTSASKDYDYYNIS-PYPNAFAYGHAACNKNLTSPDCTSCLGAAKTAM 93 (121)
Q Consensus 19 ~~~cn---~~~~-t~~~~f~~~~~~ll~~l~~~a~~~~~~~~~~~~-~~~~~~iYgl~QC~~dls~~~C~~Cl~~a~~~~ 93 (121)
|+.|+ ++++ ++++.|.++++.||..|+..++.....+|+++. +.++++||||+||++||++++|..||+.++..+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 56787 3445 566679999999999999998865334566664 346789999999999999999999999999999
Q ss_pred hccCCCCcceEEEcCceEEEEcCCCC
Q 033356 94 LGSCPSRIGSRSVLHDCKIRYEQYPF 119 (121)
Q Consensus 94 ~~~c~~~~gg~i~~~~C~lRy~~~~F 119 (121)
+.+|+.++||+|++++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.27 E-value=2.6e+02 Score=20.37 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHHHhcc-CCC---C---ceeeEeCCCCCccEEEEEEcCCCCChHhHHHHHHHHHHHhhccCCCCcce
Q 033356 31 DPFAISLAYVLADLETVTS-ASK---D---YDYYNISPYPNAFAYGHAACNKNLTSPDCTSCLGAAKTAMLGSCPSRIGS 103 (121)
Q Consensus 31 ~~f~~~~~~ll~~l~~~a~-~~~---~---~~~~~~~~~~~~~iYgl~QC~~dls~~~C~~Cl~~a~~~~~~~c~~~~gg 103 (121)
..|.+....|+..|....+ ..+ + ++|- -...|.-++.|....+..---.-|++...+....-..+.-.
T Consensus 31 ~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfl-----i~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~~~ 105 (216)
T KOG0862|consen 31 LEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFL-----IESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNIIQ 105 (216)
T ss_pred HHHHHHHHHHHHhccCCCCcccccccCCeEEEEE-----ecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 4678888888888876522 111 1 1111 12478999999999999999999999999998877777777
Q ss_pred EEEcCceEEEEcC
Q 033356 104 RSVLHDCKIRYEQ 116 (121)
Q Consensus 104 ~i~~~~C~lRy~~ 116 (121)
.+..|-++++|+.
T Consensus 106 ~~~RPY~FieFD~ 118 (216)
T KOG0862|consen 106 PASRPYAFIEFDT 118 (216)
T ss_pred ccCCCeeEEehhH
Confidence 7889999999875
No 3
>PHA00008 J DNA packaging protein
Probab=20.28 E-value=65 Score=15.13 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=8.1
Q ss_pred CCcceEEEcCc
Q 033356 99 SRIGSRSVLHD 109 (121)
Q Consensus 99 ~~~gg~i~~~~ 109 (121)
.++|+|.||..
T Consensus 11 r~KGARLWYVG 21 (26)
T PHA00008 11 RRKGARLWYVG 21 (26)
T ss_pred ccCceEEEEec
Confidence 46688998864
No 4
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=16.71 E-value=82 Score=18.58 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=6.0
Q ss_pred HhHHHHHHHH
Q 033356 80 PDCTSCLGAA 89 (121)
Q Consensus 80 ~~C~~Cl~~a 89 (121)
.-|++||..=
T Consensus 11 gFCRNCLskW 20 (68)
T PF06844_consen 11 GFCRNCLSKW 20 (68)
T ss_dssp S--HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4699999753
No 5
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=15.20 E-value=62 Score=14.86 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=4.3
Q ss_pred CCcceEEEcCc
Q 033356 99 SRIGSRSVLHD 109 (121)
Q Consensus 99 ~~~gg~i~~~~ 109 (121)
.++|+|+||..
T Consensus 10 ~~kgarlwyvg 20 (24)
T PF04726_consen 10 KRKGARLWYVG 20 (24)
T ss_dssp SSSSS----SS
T ss_pred ccCceEEEEec
Confidence 36688888764
No 6
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=15.18 E-value=1.4e+02 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=12.9
Q ss_pred ChHhHHHHHHHHHHHhh
Q 033356 78 TSPDCTSCLGAAKTAML 94 (121)
Q Consensus 78 s~~~C~~Cl~~a~~~~~ 94 (121)
++.-|..|+........
T Consensus 161 s~~fC~~C~~kL~~~l~ 177 (181)
T COG1913 161 SPNFCNSCLRKLERKLK 177 (181)
T ss_pred chhhhHHHHHHHHHhhc
Confidence 56679999998876553
No 7
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=14.12 E-value=1.5e+02 Score=17.25 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHhh
Q 033356 80 PDCTSCLGAAKTAML 94 (121)
Q Consensus 80 ~~C~~Cl~~a~~~~~ 94 (121)
.+|..|+..+.+-+.
T Consensus 36 s~CGkC~~~Arevl~ 50 (63)
T COG2906 36 SQCGKCVRAAREVLE 50 (63)
T ss_pred cchHHHHHHHHHHHH
Confidence 488999888776554
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=13.72 E-value=1e+02 Score=15.30 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHhhccCC
Q 033356 81 DCTSCLGAAKTAMLGSCP 98 (121)
Q Consensus 81 ~C~~Cl~~a~~~~~~~c~ 98 (121)
-|..|+...... ...||
T Consensus 21 fC~~C~~~~~~~-~~~CP 37 (39)
T PF13923_consen 21 FCKECIEKYLEK-NPKCP 37 (39)
T ss_dssp EEHHHHHHHHHC-TSB-T
T ss_pred hhHHHHHHHHHC-cCCCc
Confidence 488898887766 45554
No 9
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=13.14 E-value=1.2e+02 Score=18.45 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=14.3
Q ss_pred ChHhHHHHHHHHHHHhhccCCCCcceEEEcCceEEEEcC
Q 033356 78 TSPDCTSCLGAAKTAMLGSCPSRIGSRSVLHDCKIRYEQ 116 (121)
Q Consensus 78 s~~~C~~Cl~~a~~~~~~~c~~~~gg~i~~~~C~lRy~~ 116 (121)
.-.-|+.|..--..+=.+.|+ .|..||..
T Consensus 35 ~fPvCr~CyEYErkeg~q~Cp----------qCkt~ykr 63 (80)
T PF14569_consen 35 AFPVCRPCYEYERKEGNQVCP----------QCKTRYKR 63 (80)
T ss_dssp -----HHHHHHHHHTS-SB-T----------TT--B---
T ss_pred CCccchhHHHHHhhcCccccc----------ccCCCccc
Confidence 446799999988888888888 56666653
No 10
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=12.18 E-value=1.5e+02 Score=16.90 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhhccCCCCcce
Q 033356 81 DCTSCLGAAKTAMLGSCPSRIGS 103 (121)
Q Consensus 81 ~C~~Cl~~a~~~~~~~c~~~~gg 103 (121)
-|..|... .+...||+=-|.
T Consensus 31 FC~~C~e~---~l~~~CPNCgGe 50 (57)
T PF06906_consen 31 FCADCAET---MLNGVCPNCGGE 50 (57)
T ss_pred ccHHHHHH---HhcCcCcCCCCc
Confidence 46666544 446677754343
Done!