Query 033356
Match_columns 121
No_of_seqs 116 out of 1061
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 21:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 5.2E-33 1.8E-37 179.6 13.0 105 14-119 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 6.4E-32 2.2E-36 174.4 13.0 105 14-119 2-108 (108)
3 1weo_A Cellulose synthase, cat 22.8 22 0.00075 21.4 0.4 27 79-115 43-69 (93)
4 2xk0_A Polycomb protein PCL; t 19.7 58 0.002 18.5 1.7 12 107-118 41-52 (69)
5 1gff_3 Bacteriophage G4 capsid 17.7 60 0.0021 14.4 1.2 11 99-109 11-21 (26)
6 2o35_A Hypothetical protein DU 9.8 93 0.0032 19.0 0.8 9 81-89 43-51 (105)
7 3fyb_A Protein of unknown func 9.5 96 0.0033 18.9 0.8 9 81-89 42-50 (104)
8 1ci4_A Protein (barrier-TO-aut 9.0 1.5E+02 0.0053 17.6 1.5 9 80-88 75-83 (89)
9 1g25_A CDK-activating kinase a 8.8 1.3E+02 0.0044 15.6 1.1 18 81-98 30-47 (65)
10 1m06_J J protein, small core p 8.4 61 0.0021 14.5 -0.3 11 99-109 10-20 (26)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=100.00 E-value=5.2e-33 Score=179.57 Aligned_cols=105 Identities=37% Similarity=0.671 Sum_probs=95.1
Q ss_pred CCceeeeecCCCcCCCCchHHHHHHHHHHHHHHhccCCCCceeeEeC--CCCCccEEEEEEcCCCCChHhHHHHHHHHHH
Q 033356 14 NTTVTNVLCNSGEYTHGDPFAISLAYVLADLETVTSASKDYDYYNIS--PYPNAFAYGHAACNKNLTSPDCTSCLGAAKT 91 (121)
Q Consensus 14 ~~~~~~~~cn~~~~t~~~~f~~~~~~ll~~l~~~a~~~~~~~~~~~~--~~~~~~iYgl~QC~~dls~~~C~~Cl~~a~~ 91 (121)
++..++..||++++++++.|+++++.||..|..+++.+ ++.+++.+ ..+.++||||+||+||+++++|+.||+.++.
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s-~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFS-GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGT-TSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccc-cCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998865 45666655 2346899999999999999999999999999
Q ss_pred HhhccCCCCcceEEEcCceEEEEcCCCC
Q 033356 92 AMLGSCPSRIGSRSVLHDCKIRYEQYPF 119 (121)
Q Consensus 92 ~~~~~c~~~~gg~i~~~~C~lRy~~~~F 119 (121)
+++++|++++||+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.98 E-value=6.4e-32 Score=174.43 Aligned_cols=105 Identities=37% Similarity=0.671 Sum_probs=94.1
Q ss_pred CCceeeeecCCCcCCCCchHHHHHHHHHHHHHHhccCCCCceeeEeC-CCC-CccEEEEEEcCCCCChHhHHHHHHHHHH
Q 033356 14 NTTVTNVLCNSGEYTHGDPFAISLAYVLADLETVTSASKDYDYYNIS-PYP-NAFAYGHAACNKNLTSPDCTSCLGAAKT 91 (121)
Q Consensus 14 ~~~~~~~~cn~~~~t~~~~f~~~~~~ll~~l~~~a~~~~~~~~~~~~-~~~-~~~iYgl~QC~~dls~~~C~~Cl~~a~~ 91 (121)
+++++++.|+++++++++.|+++++.||..|+.+++.+ +++|+++. +.+ .++||||+||+|||++++|+.||+.++.
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFS-GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGT-TSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcC-CcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 67899999998899999999999999999999998755 34566654 222 3799999999999999999999999999
Q ss_pred HhhccCCCCcceEEEcCceEEEEcCCCC
Q 033356 92 AMLGSCPSRIGSRSVLHDCKIRYEQYPF 119 (121)
Q Consensus 92 ~~~~~c~~~~gg~i~~~~C~lRy~~~~F 119 (121)
+++.+|++++||+||+++|++|||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999998
No 3
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.77 E-value=22 Score=21.41 Aligned_cols=27 Identities=33% Similarity=0.865 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHHhhccCCCCcceEEEcCceEEEEc
Q 033356 79 SPDCTSCLGAAKTAMLGSCPSRIGSRSVLHDCKIRYE 115 (121)
Q Consensus 79 ~~~C~~Cl~~a~~~~~~~c~~~~gg~i~~~~C~lRy~ 115 (121)
-+-|+.|+.--..+-.+.|+ .|-.||.
T Consensus 43 FPvCrpCyEYErkeG~q~Cp----------qCktrYk 69 (93)
T 1weo_A 43 FPACRPCYEYERREGTQNCP----------QCKTRYK 69 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCT----------TTCCCCC
T ss_pred ChhhHHHHHHHHhccCcccc----------ccCCccc
Confidence 35799999999999999998 5666775
No 4
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=19.65 E-value=58 Score=18.46 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=9.2
Q ss_pred cCceEEEEcCCC
Q 033356 107 LHDCKIRYEQYP 118 (121)
Q Consensus 107 ~~~C~lRy~~~~ 118 (121)
..+|++||++..
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 457999998753
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=17.70 E-value=60 Score=14.43 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=8.0
Q ss_pred CCcceEEEcCc
Q 033356 99 SRIGSRSVLHD 109 (121)
Q Consensus 99 ~~~gg~i~~~~ 109 (121)
.++|+|+|+..
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46688988864
No 6
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=9.80 E-value=93 Score=19.03 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=6.9
Q ss_pred hHHHHHHHH
Q 033356 81 DCTSCLGAA 89 (121)
Q Consensus 81 ~C~~Cl~~a 89 (121)
-|++||..=
T Consensus 43 FCRNCLskW 51 (105)
T 2o35_A 43 FCRNCLSNW 51 (105)
T ss_dssp CCHHHHHHH
T ss_pred HHHHHHHHH
Confidence 699999753
No 7
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=9.54 E-value=96 Score=18.93 Aligned_cols=9 Identities=33% Similarity=0.729 Sum_probs=6.9
Q ss_pred hHHHHHHHH
Q 033356 81 DCTSCLGAA 89 (121)
Q Consensus 81 ~C~~Cl~~a 89 (121)
-|++||..=
T Consensus 42 FCRNCLskW 50 (104)
T 3fyb_A 42 FCRNCLAKW 50 (104)
T ss_dssp CCHHHHHHH
T ss_pred HHHHHHHHH
Confidence 599999753
No 8
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=9.01 E-value=1.5e+02 Score=17.55 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=6.1
Q ss_pred HhHHHHHHH
Q 033356 80 PDCTSCLGA 88 (121)
Q Consensus 80 ~~C~~Cl~~ 88 (121)
.||..||.+
T Consensus 75 ~dc~~cl~e 83 (89)
T 1ci4_A 75 RDCFGCLRE 83 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467777764
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=8.77 E-value=1.3e+02 Score=15.63 Aligned_cols=18 Identities=33% Similarity=0.715 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhhccCC
Q 033356 81 DCTSCLGAAKTAMLGSCP 98 (121)
Q Consensus 81 ~C~~Cl~~a~~~~~~~c~ 98 (121)
-|..|+......-...||
T Consensus 30 fC~~Ci~~~~~~~~~~CP 47 (65)
T 1g25_A 30 LCESCVDLLFVRGAGNCP 47 (65)
T ss_dssp EEHHHHHHHHHTTSSSCT
T ss_pred hHHHHHHHHHHcCCCcCC
Confidence 489999888654444565
No 10
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=8.42 E-value=61 Score=14.45 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=7.5
Q ss_pred CCcceEEEcCc
Q 033356 99 SRIGSRSVLHD 109 (121)
Q Consensus 99 ~~~gg~i~~~~ 109 (121)
.++|+|+|+..
T Consensus 10 r~kgarlwyvg 20 (26)
T 1m06_J 10 RRKGARLWYVG 20 (26)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCceEEEEEc
Confidence 35688888764
Done!