Query 033356
Match_columns 121
No_of_seqs 116 out of 1061
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 21:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033356.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033356hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weoa_ g.44.1.1 (A:) Cellulos 16.6 17 0.0013 20.3 0.4 28 79-116 43-70 (93)
2 d1wiga2 g.39.1.3 (A:33-73) Act 11.2 31 0.0023 16.2 0.4 11 101-111 18-28 (41)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 10.9 38 0.0028 18.3 0.8 9 81-89 40-48 (79)
4 d1g25a_ g.44.1.1 (A:) TFIIH Ma 9.7 53 0.0038 16.4 1.1 20 80-99 29-48 (65)
5 d1rmda2 g.44.1.1 (A:1-86) V(D) 9.6 69 0.005 17.2 1.6 20 80-99 44-63 (86)
6 d2baia1 g.87.1.1 (A:1-32) Poly 6.8 1.2E+02 0.0089 12.8 1.6 14 73-86 10-23 (32)
7 d1ci4a_ a.60.5.1 (A:) Barrier- 6.8 1.1E+02 0.0077 16.8 1.5 9 80-88 75-83 (89)
8 d1ha9a_ g.3.2.1 (A:) Trypsin i 6.6 38 0.0027 15.0 -0.4 7 70-76 12-18 (34)
9 d2c2la2 g.44.1.2 (A:225-304) S 5.9 75 0.0055 16.3 0.5 20 80-99 28-47 (80)
10 d1ur6b_ g.44.1.1 (B:) Not-4 N- 5.1 68 0.005 15.1 0.0 19 80-98 25-43 (52)
No 1
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.56 E-value=17 Score=20.28 Aligned_cols=28 Identities=32% Similarity=0.852 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHHhhccCCCCcceEEEcCceEEEEcC
Q 033356 79 SPDCTSCLGAAKTAMLGSCPSRIGSRSVLHDCKIRYEQ 116 (121)
Q Consensus 79 ~~~C~~Cl~~a~~~~~~~c~~~~gg~i~~~~C~lRy~~ 116 (121)
-.-|+.|+.--..+-.+.|+ .|-.||..
T Consensus 43 FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr 70 (93)
T d1weoa_ 43 FPACRPCYEYERREGTQNCP----------QCKTRYKR 70 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCT----------TTCCCCCC
T ss_pred CccchHHHHHHHhccCccCc----------ccCChhhh
Confidence 35799999998888888898 56666653
No 2
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.17 E-value=31 Score=16.20 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=7.7
Q ss_pred cceEEEcCceE
Q 033356 101 IGSRSVLHDCK 111 (121)
Q Consensus 101 ~gg~i~~~~C~ 111 (121)
+|..||-|.|-
T Consensus 18 QGs~IWHP~C~ 28 (41)
T d1wiga2 18 QGSSIWHPACR 28 (41)
T ss_dssp ETTEEECTTHH
T ss_pred cCCceeCCccc
Confidence 36778888773
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=10.94 E-value=38 Score=18.31 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=6.9
Q ss_pred hHHHHHHHH
Q 033356 81 DCTSCLGAA 89 (121)
Q Consensus 81 ~C~~Cl~~a 89 (121)
-|++||..=
T Consensus 40 FCRNCLskW 48 (79)
T d2o35a1 40 FCRNCLSNW 48 (79)
T ss_dssp CCHHHHHHH
T ss_pred HHHHHHHHH
Confidence 599999753
No 4
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=53 Score=16.37 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHhhccCCC
Q 033356 80 PDCTSCLGAAKTAMLGSCPS 99 (121)
Q Consensus 80 ~~C~~Cl~~a~~~~~~~c~~ 99 (121)
.-|..||......-...||-
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 35899999888766666774
No 5
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.64 E-value=69 Score=17.17 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHhhccCCC
Q 033356 80 PDCTSCLGAAKTAMLGSCPS 99 (121)
Q Consensus 80 ~~C~~Cl~~a~~~~~~~c~~ 99 (121)
.-|+.|+...+..-...||-
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCTT
T ss_pred hhhHHHHHHHHhhCCCcCcc
Confidence 36999999888665556773
No 6
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=6.84 E-value=1.2e+02 Score=12.77 Aligned_cols=14 Identities=29% Similarity=0.916 Sum_probs=11.9
Q ss_pred cCCCCChHhHHHHH
Q 033356 73 CNKNLTSPDCTSCL 86 (121)
Q Consensus 73 C~~dls~~~C~~Cl 86 (121)
|.-.++-++|-.|-
T Consensus 10 cahsmtfeecpkcs 23 (32)
T d2baia1 10 CAHSMTFEECPKCS 23 (32)
T ss_dssp CSSSSCGGGHHHHH
T ss_pred HHhhccHhhCcchh
Confidence 88888889998885
No 7
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.78 E-value=1.1e+02 Score=16.82 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=5.8
Q ss_pred HhHHHHHHH
Q 033356 80 PDCTSCLGA 88 (121)
Q Consensus 80 ~~C~~Cl~~ 88 (121)
.||..||.+
T Consensus 75 ~dcy~cLke 83 (89)
T d1ci4a_ 75 RDCFGCLRE 83 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467777754
No 8
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=6.56 E-value=38 Score=14.95 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=5.5
Q ss_pred EEEcCCC
Q 033356 70 HAACNKN 76 (121)
Q Consensus 70 l~QC~~d 76 (121)
|-||++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 5689887
No 9
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.86 E-value=75 Score=16.30 Aligned_cols=20 Identities=5% Similarity=-0.212 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHhhccCCC
Q 033356 80 PDCTSCLGAAKTAMLGSCPS 99 (121)
Q Consensus 80 ~~C~~Cl~~a~~~~~~~c~~ 99 (121)
.-|+.|+...+..-...||-
T Consensus 28 tfc~~ci~~~l~~~~~~cP~ 47 (80)
T d2c2la2 28 TYDRKDIEEHLQRVGHFNPV 47 (80)
T ss_dssp EEETTHHHHHHHHTCSSCTT
T ss_pred eecHHHHHHHHhcCCccCCC
Confidence 45889999888766666774
No 10
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.11 E-value=68 Score=15.12 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHhhccCC
Q 033356 80 PDCTSCLGAAKTAMLGSCP 98 (121)
Q Consensus 80 ~~C~~Cl~~a~~~~~~~c~ 98 (121)
.-|..|+......-...||
T Consensus 25 ~~c~~C~~~w~~~~~~~CP 43 (52)
T d1ur6b_ 25 QICRFCWHRIRTDENGLCP 43 (52)
T ss_dssp CCCHHHHHHHTTTSCCBCT
T ss_pred ccchHHHHHHHhhcCCCCC
Confidence 3588898876654444566
Done!