BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033358
MALNLSSTSSIACSNLQFNRLNTEARKLNLQIKCESKESSGESDIRRSKLAIGSPVIVIE
APKMIKTAASVPCLRANSGLVKPGDVGRIISRKPKDVWAVRLSIGTYLLEGKYFKPLELD
E

High Scoring Gene Products

Symbol, full name Information P value
CRR42
AT5G20935 		protein from Arabidopsis thaliana 7.7e-32

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033358
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006624 - symbol:CRR42 "AT5G20935" species:3...   349  7.7e-32   1


>TAIR|locus:505006624 [details] [associations]
            symbol:CRR42 "AT5G20935" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0016556 "mRNA modification" evidence=RCA] EMBL:CP002688
            IPI:IPI00546710 RefSeq:NP_568406.1 UniGene:At.31128
            UniGene:At.44793 PRIDE:F4K6X0 EnsemblPlants:AT5G20935.1
            GeneID:832218 KEGG:ath:AT5G20935 OMA:RCCEIAN InterPro:IPR021495
            Pfam:PF11347 Uniprot:F4K6X0
        Length = 108

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 66/92 (71%), Positives = 81/92 (88%)

Query:    30 LQIKCESKESSGESDIRRSKLAIGSPVIVIEAPKMIKTAASVPCLRANSGLVKPGDVGRI 89
             + ++C   E + E+   +SKL +GSP+I++EAPK+IKTAAS+PCLRANSGLVKPGDVGRI
Sbjct:    15 VSVRC--CEIANEAPRPKSKLQVGSPIIIVEAPKVIKTAASMPCLRANSGLVKPGDVGRI 72

Query:    90 ISRKPKDVWAVRLSIGTYLLEGKYFKPLELDE 121
             +SRKPKD+WAVRLSIGTYLL+GKYFK LELDE
Sbjct:    73 VSRKPKDLWAVRLSIGTYLLDGKYFKALELDE 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 23  0.39    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.48u 0.13s 11.61t   Elapsed:  00:00:01
  Total cpu time:  11.48u 0.13s 11.61t   Elapsed:  00:00:01
  Start:  Sat May 11 00:21:26 2013   End:  Sat May 11 00:21:27 2013

Back to top