BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033358
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
Length = 518
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 7 STSSIACSNLQFNRLNTEARK--LNLQIKCESKE 38
S+S +AC+ + +NR+ E RK L L I CE+ +
Sbjct: 366 SSSELACTRVNWNRVILEGRKPGLTLGIGCETAQ 399
>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
Length = 518
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 7 STSSIACSNLQFNRLNTEARK--LNLQIKCESKE 38
S+S +AC+ + +NR+ E RK L L I CE+ +
Sbjct: 366 SSSELACTRVNWNRVILEGRKPGLTLGIGCETAQ 399
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 38 ESSGESDIRRSKLAIGSPVIVIEAPKMIKTAASVPCLRANSGLVKPGDVGRIISRKPKDV 97
E+SG RR+ L GS +++ +P+ TA ++ + ++PGD R++S +++
Sbjct: 208 EASGL--FRRAMLQSGSGSLLLRSPE---TAMAMTERILDKAGIRPGDRERLLSIPAEEL 262
Query: 98 WAVRLSIGTYLLEG 111
LS+G ++ G
Sbjct: 263 LRAALSLGPGVMYG 276
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 38 ESSGESDIRRSKLAIGSPVIVIEAPKMIKTAASVPCLRANSGLVKPGDVGRIISRKPKDV 97
E+SG RR+ L GS +++ +P+ TA ++ + ++PGD R++S +++
Sbjct: 208 EASGL--FRRAMLQSGSGSLLLRSPE---TAMAMTERILDKAGIRPGDRERLLSIPAEEL 262
Query: 98 WAVRLSIGTYLLEG 111
LS+G ++ G
Sbjct: 263 LRAALSLGPGVMYG 276
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 28 LNLQIKCESKESSGESDIRRSKLAIGSPVIVIEAPKMIKTAASVPCLRANSGLVKPG 84
L+L+ + E K +D+ + L +G+P K+ TA C+R NSG++ G
Sbjct: 10 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAG 66
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 12 ACSNLQFNRLNTEARKLNLQIKCESKESSGE 42
+N++F +NT+ + LNL K ESK GE
Sbjct: 26 GMNNVEFIAINTDGQALNLS-KAESKIQIGE 55
>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|B Chain B, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|C Chain C, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|D Chain D, Staphylococcus Aureus Ftsz Apo-Form (Semet)
Length = 308
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 14 SNLQFNRLNTEARKLNLQIKCESKESSGE 42
+N++F +NT+ + LNL K ESK GE
Sbjct: 28 NNVEFIAINTDGQALNLS-KAESKIQIGE 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,083,125
Number of Sequences: 62578
Number of extensions: 104700
Number of successful extensions: 279
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 13
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)