BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033358
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P49367|LYS4_YEAST Homoaconitase, mitochondrial OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=LYS4 PE=1 SV=1
          Length = 693

 Score = 33.1 bits (74), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 4   NLSSTSSIACSNLQFNRLNTEARKLNLQIKCESKESSGESDIRRSKLAIGSPVIVIEAPK 63
           +L S + + C     N++N  A  +   +   S E   E+D R+S    G+   +++A  
Sbjct: 347 DLQSAADVVCPTGDLNKVNKVAPGVEFYVAAASSEI--EADARKS----GAWEKLLKAGC 400

Query: 64  MIKTAASVPCLRANSGLVKPGDVG 87
           +   +   PC+   +GL++PG+VG
Sbjct: 401 IPLPSGCGPCIGLGAGLLEPGEVG 424


>sp|Q6BM98|LYS4_DEBHA Homoaconitase, mitochondrial OS=Debaryomyces hansenii (strain ATCC
           36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
           GN=LYS4 PE=3 SV=1
          Length = 688

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 11  IACSNLQFNRLNTEARKLNLQIKCESKE---SSGESDIRRSKLAIGSPVIVIEAPKMIKT 67
           ++C+N + + +   A  +      E  E   ++  S++++   AIG+   +I+A      
Sbjct: 344 VSCTNSRLSDIKAAADIIKGHKVAEGVEFYVAAASSNVQKDAEAIGAWQDIIDAGAKPLP 403

Query: 68  AASVPCLRANSGLVKPGDVG 87
           A   PC+   +GL++ G+VG
Sbjct: 404 AGCGPCIGLGTGLLEDGEVG 423


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,400,148
Number of Sequences: 539616
Number of extensions: 1381306
Number of successful extensions: 3468
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3467
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)