BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033359
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 40 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 99
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 100 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 158
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 41 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 100
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 101 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 98
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 41 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 100
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 101 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 44 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 103
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 104 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 162
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 168 bits (425), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN PAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHP VYPSGTVCLSIL
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILE 101
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE 101
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN PAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNV PSGTVCLSIL
Sbjct: 42 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILE 101
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 102 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTV LSIL
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE 98
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 91/119 (76%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M WEC IPGK GT WEGG F L + F +DYPS PPKCKF FHPNVYPSGTV LSIL
Sbjct: 39 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILE 98
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
ED WRPAIT+KQIL+GIQ+LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 99 EDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFAP 157
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 165 bits (417), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 93/119 (78%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M W+ IPGK T WEGG + LT+ F E+YP++PPKC+F FHPNVYPSGTVCLSILN
Sbjct: 45 MNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN 104
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119
E+ GW+PAIT+KQIL+GIQDLLD PN A PAQT+ Y +F +D EY++RVR QA++ P
Sbjct: 105 EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 91/115 (79%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
WE IPGK GT+W GG +P+T+ + +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED
Sbjct: 43 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 102
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
WRPAIT+KQI++G+QDLLD PNP PAQ ++ F ++ AEY ++V QAKQY
Sbjct: 103 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 91/115 (79%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
WE IPGK GT+W GG +P+T+ + +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED
Sbjct: 41 WEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED 100
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
WRPAIT+KQI++G+QDLLD PNP PAQ ++ F ++ AEY ++V QAKQY
Sbjct: 101 QDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M+W +I G T W+GG F L+L FSEDYP+KPP +F FHPN+Y G++CL IL
Sbjct: 34 MLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116
N W P V IL IQ LL PNP PA ++ +++ + EY RRVR +Q
Sbjct: 94 --NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
+ WE II G T +E G F L+L F+E+YP+KPP KF FHPNVY G++CL IL
Sbjct: 34 LTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 93
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116
N W P V IL IQ LLD+PNP PA + QL+ ++ EY++RV+Q +Q
Sbjct: 94 --NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
+ WE II G T +E G F L+L F+E+YP+KPP KF FHPNVY G++CL IL
Sbjct: 37 LTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 96
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116
N W P V IL IQ LLD+PNP PA + QL+ ++ EY++RV+Q +Q
Sbjct: 97 --NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M W +I G GT +E G F L + FSE+YP+KPP +F FHPNVY G++CL IL
Sbjct: 34 MQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL- 92
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116
N W P V IL IQ LLD+PNP PA + QL+ ++ EY++RV +Q
Sbjct: 93 -QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 60
M+W +I G T +E G F L L F E+YP+KPP KF FHPNVY +G +CL IL
Sbjct: 34 MVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116
N W P V IL IQ L + PNPA PA + LF ++Y +RV++ ++
Sbjct: 94 --NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 51 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 110
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+TV ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 111 --WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 163
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 39 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 98
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+TV ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 99 --WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+TV ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 147
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 38 WQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ 97
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+TV ++L+ I LL PNP DP D ++ D +Y R R+ ++Y
Sbjct: 98 --WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKY 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + + GG F L+++F DYP KPPK F +HPN+ +G++CL IL +
Sbjct: 33 WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + ++ D + Y+ R+ ++Y
Sbjct: 93 --WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 51 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 110
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 111 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 38 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 97
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 98 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 150
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 43 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 102
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 103 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKY 155
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 93 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 39 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ 98
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+TV ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 99 --WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G G+ +EGG F L + FS DYP KPPK F +H N+ G +CL IL ++
Sbjct: 35 WRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 95 --WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 147
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + + GG F L ++F DYP KPPK F +HPN+ G +CL IL +
Sbjct: 53 WQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ 112
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + L+ D Y + R+ +++Y
Sbjct: 113 --WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 43 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 102
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 103 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 155
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 32 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 91
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 92 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 144
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 147
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 41 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 100
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 101 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 153
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL L
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 35 WQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 95 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G G+ +EGG F L + F+ +YP KPPK F +H N+ G +CL IL ++
Sbjct: 80 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 139
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 140 --WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE- 61
WE ++ G T +EGG+F L F DYP KPPK KF +HPN+ G VC+SIL++
Sbjct: 36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDP 95
Query: 62 ----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
+ W P TV+ IL+ + +L PN PA D ++ ++ AE+K++V
Sbjct: 96 GDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVA 155
Query: 112 QQAKQ 116
Q ++
Sbjct: 156 QCVRR 160
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 36 WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 95
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D Y + R+ ++Y
Sbjct: 96 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 36 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 95
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 96 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 148
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 51 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ 110
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 111 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 35 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR-- 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+ W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 93 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G GT +EGG + L L+ E YP +PPK +F +HPN+ G +CL IL +
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL P P DP + + F QD + + RQ K Y
Sbjct: 93 --WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 93 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G GT +EGG + L L+ E YP +PPK +F +HPN+ G +CL IL +
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL P P DP + + F QD + + RQ K Y
Sbjct: 93 --WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + + GG F L+++F DYP KPPK F +HPN+ +G +CL IL +
Sbjct: 34 WQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ 93
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL NP DP + ++ D +Y+ R+ K+Y
Sbjct: 94 --WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 32 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ 91
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ + ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 92 --WSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 144
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W+ I G + ++GG F LT++F DYP KPPK F +HP + +G++ L IL
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQ 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 93 --WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 61
IW+C+I G T + G F L F +DYP PPK F HPN+YP+G VC+SIL+
Sbjct: 36 IWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHS 95
Query: 62 -----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV 110
+ W P +V++IL+ + +L +PN A D L+ + E++R+V
Sbjct: 96 PGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQV 155
Query: 111 R 111
+
Sbjct: 156 K 156
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
++ I G + +E G F L LY +DYP + PK +F +HPN+ G +CL +L
Sbjct: 37 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-- 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 95 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 149
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
++ I G + +E G F L LY +DYP + PK +F +HPN+ G +CL +L
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-- 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 93 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 61
W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL +L
Sbjct: 55 WVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK- 113
Query: 62 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
N W PA+T++ L+ IQ LL P P DP + +++ ++ A + + K +
Sbjct: 114 -NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE +I G T +E G FP L F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 39 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 98
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W P +V++IL+ + +L +PN A D +++ D ++ + +
Sbjct: 99 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 158
Query: 112 Q 112
Q
Sbjct: 159 Q 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE +I G T +E G FP L F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 40 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 99
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W P +V++IL+ + +L +PN A D +++ D ++ + +
Sbjct: 100 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 159
Query: 112 Q 112
Q
Sbjct: 160 Q 160
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE +I G T +E G FP L F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 36 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 95
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W P +V++IL+ + +L +PN A D +++ D ++ + +
Sbjct: 96 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 155
Query: 112 Q 112
Q
Sbjct: 156 Q 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE- 61
WE +I G T +EGG F L F +DYP +PPK KF +HPNV +G VC+SIL+E
Sbjct: 50 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEP 109
Query: 62 ----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 110
+ W P TV+ I++ + +L PN PA D + + +D E+KR+V
Sbjct: 110 GEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
Query: 111 RQ 112
+
Sbjct: 170 AR 171
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE +I G T +E G FP L F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 42 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAP 101
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W P +V++IL+ + +L +PN A D +++ D ++ + +
Sbjct: 102 GDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAK 161
Query: 112 Q 112
Q
Sbjct: 162 Q 162
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G + ++GG F L ++F DYP K P+ F +HPN+ +G +CL IL +
Sbjct: 36 WTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ 95
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+T+ ++L+ I LL PNP+DP + + + +++ R+ + Y
Sbjct: 96 --WSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMY 148
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G + +EGG F L L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 96
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 97 --WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G + +EGG F L L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 95 --WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 147
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 61
W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL IL
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 62 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD 102
+ W PA+T++ L+ IQ +L P P DP + ++ I++
Sbjct: 137 E--WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIEN 175
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G + +EGG F L L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 97
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 98 --WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 150
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G + +EGG F L L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 99
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 100 --WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 152
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ +I G + +EGG F L L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 93 --WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 145
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
+ I G GT + GG F + L +D+P+ PPK F FHPNV +G +C+++L D
Sbjct: 45 LQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRD 104
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W + ++ +L+ I+ LL PNP + +L +++ EY R R
Sbjct: 105 --WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
++ I G + +E G F L LY +DYP + PK +F +HPN+ G + L +L
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLK-- 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 93 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 9 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 67
G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSP 97
Query: 68 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 108
IT+K L+ +Q LL P P DP + Q +++D + +
Sbjct: 98 VITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 12 GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAIT 70
GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P IT
Sbjct: 44 GTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSPVIT 101
Query: 71 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 108
+K L+ +Q LL P P DP + Q +++D + +
Sbjct: 102 LKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
++ I G + +E G F L LY +DYP + PK +F +HP + G + L +L
Sbjct: 35 FQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLK-- 92
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W PA+ ++ +L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 93 TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W + G T +E + LTL F DYP KPP KF +HPNV SG +CL IL E+
Sbjct: 41 WVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN 100
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 115
W + V+ IL+ +Q LL +PN A P ++ + EYK+ + ++ K
Sbjct: 101 --WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 150
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SIL+
Sbjct: 40 WEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPP 99
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 99
W P V+ IL+ + LL++PN PA D ++
Sbjct: 100 VDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-- 60
WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SIL+
Sbjct: 37 WEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPP 96
Query: 61 ---------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 99
W P V+ IL+ + LL++PN PA D ++
Sbjct: 97 VDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNG 64
I G T +E G F L + E YP +PP+ +F +HPN+ +G +CL +L
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 65 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
WRP++ + +L IQ L+ +PNP DP D F + + + RQ +++
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 18 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 77
G L F+E YP +PPK + FHPN+ G VCL+IL ED W PA+ ++ I+ G
Sbjct: 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSIITG 137
Query: 78 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
+ L +PNP DP D +L + E+ VR
Sbjct: 138 LLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 61
++ + G GT +EGG + + + +DYP P F HPNV SG+VCL ++N+
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 62 DNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
W P ++ + V + LL PNP+DP +D L ++D Y+ +V++ K Y
Sbjct: 91 --TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLY 145
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSIL 59
M WE I G + W+G F LT++F+ +Y PP KF FHPNV P +G C+ L
Sbjct: 53 MEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFL 112
Query: 60 NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
+ W T+ IL+ +Q +L P +P + ++ ++D + Y+ +R
Sbjct: 113 DNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 74
++ G F + + YP PPK K +HPN+ G VCL+IL ED W+P +T+ I
Sbjct: 48 YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED--WKPVLTINSI 105
Query: 75 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 115
+ G+Q L +PNP DP + ++ + +++ V++ +
Sbjct: 106 IYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXR 146
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 9 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 67
G GT +EGG + + + + YP K P F FHPN+ SGTVCL ++N+ W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTA 116
Query: 68 AITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+ I + LL PNP DP D +++ P EYK+++++ ++Y
Sbjct: 117 LYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 74
++ G F + + YP PPK K +HPN+ G V L+IL ED W+P +T+ I
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSI 125
Query: 75 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 115
+ G+Q L +PNP DP + ++ + +++ V++ +
Sbjct: 126 IYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 74
++ G F + + F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q+
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQV 104
Query: 75 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+ + L++ P P P + D + + +D ++ + + K+Y
Sbjct: 105 IQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 74
++ G F + + F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q+
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQV 106
Query: 75 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+ + L++ P P P + D + + +D ++ + + K+Y
Sbjct: 107 IQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 149
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 20 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 79
F L + F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L +
Sbjct: 53 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALN 111
Query: 80 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 112
L+++PN +P + D L Q+P +++ +
Sbjct: 112 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 144
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 20 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 79
F L + F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L +
Sbjct: 50 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALN 108
Query: 80 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 112
L+++PN +P + D L Q+P +++ +
Sbjct: 109 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 141
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G GT +E + L+L F YP P KF +HPNV G + L IL E
Sbjct: 62 WVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK 121
Query: 63 NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 112
W V+ IL+ IQ LL +PN P T +L+ ++P +K+ +++
Sbjct: 122 --WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 70
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 71 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+K ++ G+ L D N DP + + ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 70
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 71 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
+K ++ G+ L D N DP + + ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILN 60
W + G GT +EG F L FS YP P+ F HP+VY +G +CLSIL
Sbjct: 56 WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115
Query: 61 EDNGWRPAITVKQILVGIQDLLD 83
ED W PA++V+ + + I +L
Sbjct: 116 ED--WSPALSVQSVCLSIISMLS 136
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 9 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 67
G GT +E G + L + DYP K P F HPNV SG+VCL ++N+ W P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQT--WTP 103
Query: 68 AITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
++ I V + LL PNP+DP L D + +R+ +
Sbjct: 104 MYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 65
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 101
Query: 66 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
A+T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 65
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 102
Query: 66 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
A+T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 65
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 104
Query: 66 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
A+T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 105 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 65
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 117
Query: 66 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
A+T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 65
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 153
Query: 66 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117
A+T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCL 56
I + +I G T + G F +YF +DYPS PP F+PN+Y G VCL
Sbjct: 111 IXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCL 170
Query: 57 SILNEDNG-----WRPAI-TVKQILVGIQDLL--DQPNPADPA--QTDGYQLFIQDPAEY 106
SILN +G W P + Q+LV +Q L+ +P +P ++ G Q EY
Sbjct: 171 SILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230
Query: 107 KRRVRQ 112
+RQ
Sbjct: 231 DGNIRQ 236
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W C I G+ GT +E + LT++ ++YP PP KF V G V + L+
Sbjct: 61 WSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL 120
Query: 63 NGWRPAITVKQILVGI-QDLLDQPNPADPAQTDG 95
W T++ IL+ + Q++L N P +G
Sbjct: 121 KNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W C I G+ GT +E + LT++ ++YP PP KF V G V + L+
Sbjct: 57 WSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL 116
Query: 63 NGWRPAITVKQILVGI-QDLLDQPNPADPAQTDG 95
W T++ IL+ + Q++L N P +G
Sbjct: 117 KNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 150
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILN 60
WE II G + T +E F + + YP PPK F Q H NV +G +CL+IL
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK 109
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 111
+ W P + + + LL +P P D G + D + Y+ V+
Sbjct: 110 PEE-WTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILN 60
WE II G + T +E F + + YP PPK F Q H NV +G +CL+IL
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 111
+ W P + + + LL +P P D G + D + Y+ V+
Sbjct: 110 PEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILN 60
WE II G + T +E F + + YP PPK F Q H NV +G +CL+IL
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK 109
Query: 61 EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 111
+ W P + + + LL +P P D G + D + Y+ V+
Sbjct: 110 PEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILN 60
IW G T + + L + F +DYP KPP F Q H +VY +G +CLS+L
Sbjct: 37 IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG 96
Query: 61 EDNGWRPAITVKQILVGIQDLLDQ 84
+D + P++++ +++ I +L
Sbjct: 97 DD--YNPSLSISGLVLSIISMLSS 118
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILN 60
W ++ G T +EGGY+ L F ++P KPP P G F N +CLSI +
Sbjct: 46 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCLSITD 101
Query: 61 -EDNGWRPAITVKQILVGIQDLLDQPNPA 88
+ W PA +V IL G+ + + P
Sbjct: 102 FHPDTWNPAWSVSTILTGLLSFMVEKGPT 130
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILN 60
IW G T + + + + F ++YP KPP F Q H +VY +G +CLS+L
Sbjct: 51 IWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG 110
Query: 61 EDNGWRPAITVKQILVGIQDLLDQ 84
+D + P++++ +++ I +L
Sbjct: 111 DD--YNPSLSISGLILSIISMLSS 132
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 61
I + P + G + L++ FS+DYP +PP +F + P V G +C ++N+
Sbjct: 53 ILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND 112
Query: 62 DNGWRPAITVKQILVGIQDLL------DQPNPADPAQTDGYQLFIQDPAEYKRRVR 111
W P ++ + D + + + +P + F QD A RR R
Sbjct: 113 --FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRRGR 166
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G ++ E + L++ +YP PPK F P V P+ + +
Sbjct: 42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 101
Query: 63 NGWRPAITVKQILVGIQDLLDQP 85
W+ A T++ +L+ ++ + P
Sbjct: 102 RDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 62
W I G ++ E + L++ +YP PPK F P V P+ + +
Sbjct: 41 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL 100
Query: 63 NGWRPAITVKQILVGIQDLLDQP 85
W+ A T++ +L+ ++ + P
Sbjct: 101 RDWKRAYTMETLLLDLRKEMATP 123
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 82 LDQPNPADPAQTDGYQLFI------------QDPAEYKRRVRQQAKQ 116
L + NP DP TD ++LFI DP + ++R +Q K+
Sbjct: 389 LAKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKE 435
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSI 58
W +I G T +E + L + YP PP +F V S V +S+
Sbjct: 71 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 130
Query: 59 LNEDNGWRPAITVKQILVGIQDLL 82
L + W+ + ++K +L ++ L+
Sbjct: 131 LAK---WQNSYSIKVVLQELRRLM 151
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 61
W +I G T++E + L + YP PP +F + SG V +
Sbjct: 40 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 99
Query: 62 DNGWRPAITVKQILVGIQDLL 82
W+ + ++K +L ++ L+
Sbjct: 100 LAKWQNSYSIKVVLQELRRLM 120
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSI 58
W +I G T +E + L + YP PP +F V S V +S+
Sbjct: 43 WTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 102
Query: 59 LNEDNGWRPAITVKQILVGIQDLL 82
L + W+ + ++K +L ++ L+
Sbjct: 103 LAK---WQNSYSIKVVLQELRRLM 123
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 61
W +I G T++E + L + YP PP +F + SG V +
Sbjct: 41 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 100
Query: 62 DNGWRPAITVKQILVGIQDLL 82
W+ + ++K +L ++ L+
Sbjct: 101 LAKWQNSYSIKVVLQELRRLM 121
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 61
W +I G T++E + L + YP PP +F + SG V +
Sbjct: 46 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 105
Query: 62 DNGWRPAITVKQILVGIQDLL 82
W+ + ++K +L ++ L+
Sbjct: 106 LAKWQNSYSIKVVLQELRRLM 126
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSI 58
W +I G T +E + L + YP PP +F V S V +S+
Sbjct: 61 WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV 120
Query: 59 LNEDNGWRPAITVKQILVGIQDLL 82
L + W+ + ++K +L ++ L+
Sbjct: 121 LAK---WQNSYSIKVVLQELRRLM 141
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 61
W +I G T++E + L + YP PP +F + SG V +
Sbjct: 51 WTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPV 110
Query: 62 DNGWRPAITVKQILVGIQDLL 82
W+ + ++K +L ++ L+
Sbjct: 111 LAKWQNSYSIKVVLQELRRLM 131
>pdb|3S6N|2 Chain 2, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
Length = 280
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 64 GWRPAITVKQILVGIQDLLDQPNPADPAQ-TDGYQLFI--QDPAEYKRRVRQQAKQYPPV 120
W PA + +++L+ + P +P T+G+ + + P EY RRV+ +A Q P V
Sbjct: 13 AWVPAES------AVEELMPRLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDV 66
Query: 121 I 121
+
Sbjct: 67 V 67
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|B Chain B, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|C Chain C, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|D Chain D, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
Length = 425
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 34 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 82
PP K Q + PSG C +++ D+ A+ QI +G+QD L
Sbjct: 353 PPSDKLVQDIWSSLSVPSGLGCATVIYPDSA---ALMAAQI-IGLQDYL 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,679,319
Number of Sequences: 62578
Number of extensions: 197614
Number of successful extensions: 465
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 121
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)