Query 033359
Match_columns 121
No_of_seqs 126 out of 1032
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.1E-49 2.4E-54 264.0 11.6 117 1-119 31-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.5E-48 3.2E-53 263.4 12.8 117 1-119 36-152 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1.8E-45 3.9E-50 238.5 11.1 116 1-118 34-149 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 4.8E-45 1E-49 248.0 13.7 117 1-119 32-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-44 2.4E-49 245.1 13.7 116 1-118 31-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 8.1E-44 1.7E-48 236.8 11.9 119 1-119 36-165 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 1.4E-43 3.1E-48 232.6 12.5 119 1-119 39-157 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 2.5E-41 5.3E-46 230.9 10.2 115 3-119 38-153 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.8E-40 3.9E-45 222.8 12.3 113 1-114 28-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 5.6E-39 1.2E-43 216.7 13.8 116 1-118 29-145 (145)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-38 2.5E-43 214.3 12.0 113 1-114 29-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 4.3E-38 9.3E-43 204.4 11.0 117 1-117 35-162 (165)
13 KOG0416 Ubiquitin-protein liga 100.0 3.3E-37 7.2E-42 207.6 9.5 117 2-120 31-149 (189)
14 KOG0421 Ubiquitin-protein liga 100.0 5.5E-37 1.2E-41 201.7 8.6 114 1-117 59-172 (175)
15 KOG0422 Ubiquitin-protein liga 100.0 5.2E-36 1.1E-40 196.0 12.1 118 1-120 33-150 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 8.4E-35 1.8E-39 196.3 9.6 114 2-118 61-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 6.9E-32 1.5E-36 182.6 5.9 115 4-120 43-157 (223)
18 KOG0427 Ubiquitin conjugating 99.9 7.8E-24 1.7E-28 137.7 8.7 90 2-93 45-136 (161)
19 KOG0429 Ubiquitin-conjugating 99.9 1E-23 2.3E-28 147.7 9.5 116 1-119 49-170 (258)
20 KOG0894 Ubiquitin-protein liga 99.9 2.9E-23 6.3E-28 145.0 11.5 86 1-90 35-125 (244)
21 KOG0428 Non-canonical ubiquiti 99.7 5.6E-18 1.2E-22 120.8 8.5 84 1-86 40-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 6.2E-18 1.3E-22 139.2 6.7 87 4-90 884-979 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 4.3E-14 9.3E-19 92.5 5.8 82 2-83 40-122 (138)
24 KOG0895 Ubiquitin-conjugating 99.5 1.3E-13 2.7E-18 114.2 6.9 82 3-84 314-404 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 4E-08 8.6E-13 65.4 7.4 67 16-84 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 2.6E-08 5.7E-13 63.8 5.9 90 21-112 14-108 (122)
27 PF05743 UEV: UEV domain; Int 98.6 6.1E-08 1.3E-12 63.6 4.4 67 14-83 42-116 (121)
28 KOG2391 Vacuolar sorting prote 97.7 0.00016 3.5E-09 54.6 6.5 70 12-84 60-137 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.2 0.063 1.4E-06 35.3 8.2 74 10-83 34-120 (122)
30 PF14457 Prok-E2_A: Prokaryoti 95.7 0.021 4.6E-07 39.3 4.2 62 22-84 57-126 (162)
31 PF08694 UFC1: Ubiquitin-fold 94.9 0.035 7.6E-07 37.3 3.2 66 9-75 56-135 (161)
32 smart00591 RWD domain in RING 94.7 0.1 2.2E-06 32.5 4.9 24 18-41 41-64 (107)
33 PF05773 RWD: RWD domain; Int 94.4 0.069 1.5E-06 33.5 3.7 29 13-41 44-72 (113)
34 PF14460 Prok-E2_D: Prokaryoti 88.8 0.7 1.5E-05 32.0 3.7 46 40-90 89-137 (175)
35 PF06113 BRE: Brain and reprod 87.0 2.1 4.7E-05 32.7 5.6 60 14-81 61-123 (333)
36 KOG3357 Uncharacterized conser 79.8 2.9 6.3E-05 27.8 3.3 60 8-68 58-128 (167)
37 TIGR03737 PRTRC_B PRTRC system 75.0 5.9 0.00013 28.8 4.1 43 41-89 131-177 (228)
38 KOG4018 Uncharacterized conser 66.6 5.6 0.00012 28.6 2.4 20 19-38 50-69 (215)
39 cd00421 intradiol_dioxygenase 60.1 11 0.00024 25.2 2.8 24 17-40 65-89 (146)
40 cd03457 intradiol_dioxygenase_ 58.3 12 0.00026 26.3 2.9 25 16-40 85-109 (188)
41 KOG0309 Conserved WD40 repeat- 57.8 20 0.00044 30.8 4.4 36 5-41 453-490 (1081)
42 PF09765 WD-3: WD-repeat regio 56.9 8.2 0.00018 29.1 1.9 49 19-83 138-187 (291)
43 cd03459 3,4-PCD Protocatechuat 51.5 18 0.0004 24.6 2.8 24 17-40 72-100 (158)
44 cd07981 TAF12 TATA Binding Pro 50.2 42 0.0009 19.6 3.9 42 77-118 6-47 (72)
45 cd05845 Ig2_L1-CAM_like Second 46.5 39 0.00084 21.0 3.5 26 15-42 16-41 (95)
46 PF12652 CotJB: CotJB protein; 46.4 55 0.0012 19.7 4.0 32 88-119 24-55 (78)
47 PF09943 DUF2175: Uncharacteri 44.5 24 0.00052 22.4 2.3 19 2-22 2-20 (101)
48 COG3866 PelB Pectate lyase [Ca 43.3 37 0.0008 26.1 3.5 40 2-41 198-240 (345)
49 PF03847 TFIID_20kDa: Transcri 42.4 64 0.0014 18.8 3.8 42 77-118 4-45 (68)
50 PF06113 BRE: Brain and reprod 40.9 29 0.00063 26.7 2.7 22 20-41 308-329 (333)
51 KOG0177 20S proteasome, regula 39.7 8.1 0.00018 27.3 -0.4 32 51-84 135-166 (200)
52 PF12018 DUF3508: Domain of un 38.8 29 0.00062 25.9 2.4 32 88-119 236-267 (281)
53 TIGR02423 protocat_alph protoc 36.6 40 0.00087 23.8 2.7 23 17-39 96-123 (193)
54 cd03463 3,4-PCD_alpha Protocat 36.0 43 0.00092 23.5 2.8 23 17-39 92-119 (185)
55 PF13950 Epimerase_Csub: UDP-g 34.6 46 0.00099 18.9 2.3 19 64-82 37-55 (62)
56 KOG4445 Uncharacterized conser 34.3 54 0.0012 25.1 3.2 25 18-42 45-69 (368)
57 KOG0662 Cyclin-dependent kinas 31.7 46 0.00099 24.0 2.3 57 32-88 167-225 (292)
58 PF09280 XPC-binding: XPC-bind 30.5 87 0.0019 17.7 3.0 22 91-112 34-55 (59)
59 PF02563 Poly_export: Polysacc 30.3 68 0.0015 19.0 2.7 37 46-84 33-69 (82)
60 KOG1047 Bifunctional leukotrie 30.3 49 0.0011 27.4 2.6 29 13-42 248-279 (613)
61 PF11333 DUF3135: Protein of u 28.9 1.2E+02 0.0026 18.4 3.6 24 93-116 7-30 (83)
62 TIGR02439 catechol_proteo cate 27.2 70 0.0015 24.1 2.8 16 16-31 179-194 (285)
63 COG1225 Bcp Peroxiredoxin [Pos 27.0 98 0.0021 21.2 3.3 33 45-81 123-155 (157)
64 smart00545 JmjN Small domain f 26.1 98 0.0021 16.2 2.5 18 101-118 13-30 (42)
65 PF01175 Urocanase: Urocanase; 26.1 1.1E+02 0.0023 25.3 3.7 26 92-117 271-296 (546)
66 PF00779 BTK: BTK motif; Inte 25.4 25 0.00055 17.4 0.1 17 43-59 2-19 (32)
67 cd03461 1,2-HQD Hydroxyquinol 24.6 83 0.0018 23.6 2.8 17 16-32 171-187 (277)
68 PF07960 CBP4: CBP4; InterPro 24.3 1.5E+02 0.0032 19.7 3.6 31 90-121 39-76 (128)
69 PRK05414 urocanate hydratase; 23.7 1.2E+02 0.0026 25.0 3.6 26 92-117 281-306 (556)
70 TIGR01228 hutU urocanate hydra 23.7 1.2E+02 0.0026 24.9 3.6 26 92-117 272-297 (545)
71 KOG4064 Cysteine dioxygenase C 23.1 1.8E+02 0.0039 20.1 3.9 53 65-117 7-60 (196)
72 PF08405 Calici_PP_N: Viral po 23.1 93 0.002 24.0 2.8 29 92-120 310-338 (358)
73 cd01019 ZnuA Zinc binding prot 23.0 87 0.0019 23.2 2.6 49 64-118 123-171 (286)
74 PF08369 PCP_red: Proto-chloro 22.8 1.3E+02 0.0029 15.9 2.7 26 93-118 3-28 (45)
75 COG4847 Uncharacterized protei 22.6 91 0.002 19.7 2.2 26 92-117 75-100 (103)
76 PF05678 VQ: VQ motif; InterP 22.6 62 0.0013 15.9 1.2 20 99-118 8-27 (31)
77 cd03460 1,2-CTD Catechol 1,2 d 22.5 97 0.0021 23.3 2.8 16 16-31 175-190 (282)
78 PF14135 DUF4302: Domain of un 21.9 1.6E+02 0.0034 21.2 3.7 49 3-53 32-104 (235)
79 COG2819 Predicted hydrolase of 21.6 1.2E+02 0.0027 22.6 3.2 30 12-41 15-46 (264)
80 cd02860 Pullulanase_N_term Pul 21.5 1.6E+02 0.0035 17.8 3.3 21 3-27 49-69 (100)
81 PF15572 Imm26: Immunity prote 21.3 77 0.0017 19.9 1.7 68 10-82 7-85 (96)
82 cd03464 3,4-PCD_beta Protocate 21.2 1.1E+02 0.0023 22.2 2.7 23 17-39 122-151 (220)
83 cd01145 TroA_c Periplasmic bin 21.0 87 0.0019 21.8 2.2 47 64-116 110-156 (203)
84 PF01774 UreD: UreD urease acc 20.9 1E+02 0.0022 21.7 2.6 26 4-29 1-26 (209)
85 TIGR02438 catachol_actin catec 20.8 1.1E+02 0.0024 23.0 2.8 16 16-31 183-198 (281)
86 PF03366 YEATS: YEATS family; 20.6 2.1E+02 0.0046 17.2 5.1 41 2-44 3-43 (84)
87 smart00803 TAF TATA box bindin 20.6 1.6E+02 0.0034 16.8 2.9 29 90-118 19-47 (65)
88 TIGR02422 protocat_beta protoc 20.5 1.1E+02 0.0025 22.0 2.7 24 16-39 116-146 (220)
89 PF09606 Med15: ARC105 or Med1 20.5 34 0.00073 29.5 0.0 20 22-41 718-737 (799)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=264.04 Aligned_cols=117 Identities=41% Similarity=0.855 Sum_probs=115.2
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||.|||||||+|++.|.||++||++||+|+|+|+||||||+.+|+||+++|.. +|+|+.+|.+||++|++
T Consensus 31 ~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~--~WsPAl~i~~VllsI~s 108 (148)
T KOG0417|consen 31 FHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKD--QWSPALTISKVLLSICS 108 (148)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhc--cCChhhHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
+|.+|++++|++++++.+|+.|+.+|+++||+|++|||.
T Consensus 109 LL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 109 LLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred HhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-48 Score=263.37 Aligned_cols=117 Identities=48% Similarity=0.916 Sum_probs=114.9
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||++||||||+|++.|.||++||++||+|+|.++|||||||.+|+||+++|.. +|+|.++|.+||.+|++
T Consensus 36 ~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~s 113 (153)
T COG5078 36 FHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKD--RWSPVYTLETILLSLQS 113 (153)
T ss_pred eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhC--CCCccccHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
+|.+||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus 114 lL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 114 LLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999975
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-45 Score=238.46 Aligned_cols=116 Identities=46% Similarity=0.906 Sum_probs=113.4
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
|+|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||||.+|.+|+++|.. .|+|.|++.+||.+||+
T Consensus 34 M~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQs 111 (152)
T KOG0419|consen 34 MEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQS 111 (152)
T ss_pred eeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
||.+|++++|+|.+||++|++|+.+|.+++++.++++=
T Consensus 112 lL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 112 LLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred HhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998763
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.8e-45 Score=247.99 Aligned_cols=117 Identities=35% Similarity=0.785 Sum_probs=114.6
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||+++|.. +|+|++|+.+||.+|++
T Consensus 32 ~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ 109 (152)
T PTZ00390 32 RHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQA 109 (152)
T ss_pred cEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcc--cCCCCCcHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
+|.+|++++|+|.+||++|++|++.|+++||+|+++||.
T Consensus 110 ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 110 LLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred HHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999985
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-44 Score=245.12 Aligned_cols=116 Identities=36% Similarity=0.817 Sum_probs=113.9
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+.+|.||+++|.. +|+|++++++||.+|++
T Consensus 31 ~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ 108 (147)
T PLN00172 31 FRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRD--QWSPALTVSKVLLSISS 108 (147)
T ss_pred heEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcC--CCCCcCcHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
+|.+|++++|+|.+|+++|.+|+++|.++||+|+++||
T Consensus 109 ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 109 LLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred HHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999997
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-44 Score=236.79 Aligned_cols=119 Identities=39% Similarity=0.800 Sum_probs=114.7
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCC-----------CCCCCCcc
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAI 69 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~-----------~~~W~p~~ 69 (121)
|+|.+.|+||++|+||||.|+..+.||.+||.+||+++|.|.+||||||++|++|+++|.+ .+.|+|.+
T Consensus 36 f~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~ 115 (171)
T KOG0425|consen 36 FEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQ 115 (171)
T ss_pred eEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999987 27899999
Q ss_pred cHHHHHHHHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 70 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 70 ~i~~il~~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
|+++||++|.+||.+||.++|+|-+||+.+++|+++|.++|+++|.+..+
T Consensus 116 tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 116 TVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE 165 (171)
T ss_pred chhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988643
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=232.62 Aligned_cols=119 Identities=68% Similarity=1.252 Sum_probs=116.5
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
+.|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||++|.|||++|+++.+|+|+.||.+||..||+
T Consensus 39 ~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqd 118 (158)
T KOG0424|consen 39 MNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQD 118 (158)
T ss_pred EEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999997679999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
||.+||..+|+|.+|...|.+|+++|+++||.++++|++
T Consensus 119 LL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 119 LLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred HhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-41 Score=230.87 Aligned_cols=115 Identities=32% Similarity=0.675 Sum_probs=112.0
Q ss_pred eEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeC-CCceeecCCCCCCCCCCcccHHHHHHHHHHh
Q 033359 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDL 81 (121)
Q Consensus 3 W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~ 81 (121)
-++.|.||+|||||||+|.+.|.+|++|||+||+|+|.|+||||||++ +|.||+++|.. .|.+++||.++|++||++
T Consensus 38 ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQal 115 (200)
T KOG0418|consen 38 IKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQAL 115 (200)
T ss_pred ceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999986 99999999999 899999999999999999
Q ss_pred hcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 82 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 82 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
|..|++.+|.+..++++|.+|++.|.+.||.|+..||.
T Consensus 116 L~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 116 LCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred HcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999985
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.8e-40 Score=222.84 Aligned_cols=113 Identities=41% Similarity=0.868 Sum_probs=103.9
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+.+|+||+++|..+ .|+|++++.+||.+|++
T Consensus 28 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~-~W~p~~~i~~il~~i~~ 106 (140)
T PF00179_consen 28 FEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPE-SWSPSYTIESILLSIQS 106 (140)
T ss_dssp TEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTT-TC-TTSHHHHHHHHHHH
T ss_pred heEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcc-cCCcccccccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999863 59999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHH
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 114 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 114 (121)
+|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 107 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 107 LLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999984
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.6e-39 Score=216.72 Aligned_cols=116 Identities=45% Similarity=0.882 Sum_probs=113.0
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCC-CCCCCCCcccHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-EDNGWRPAITVKQILVGIQ 79 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~-~~~~W~p~~~i~~il~~i~ 79 (121)
++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+++|.||++.+. . +|+|++++.++|.+|+
T Consensus 29 ~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~--~W~p~~~l~~il~~i~ 106 (145)
T smart00212 29 LEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQE--KWSPATTLETVLLSIQ 106 (145)
T ss_pred heEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCC--CCCCCCcHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999998 5 7999999999999999
Q ss_pred HhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 80 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 80 ~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
++|.+|+.++++|.+|+++|+++++.|+++|+++++|++
T Consensus 107 ~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 107 SLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred HHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999985
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-38 Score=214.30 Aligned_cols=113 Identities=42% Similarity=0.892 Sum_probs=109.1
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
++|+++|.||++|||+||+|+++|.||++||++||+|+|.+.++||||+.+|.||++++..+ .|+|++++++||.+|++
T Consensus 29 ~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~-~W~p~~~l~~il~~i~~ 107 (141)
T cd00195 29 LEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTH-GWSPAYTLRTVLLSLQS 107 (141)
T ss_pred hEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCC-CcCCcCcHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999882 49999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHH
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 114 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 114 (121)
+|.+|+.++++|.+|+.+|++|+++|+++|++++
T Consensus 108 ~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 108 LLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred HHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=204.38 Aligned_cols=117 Identities=38% Similarity=0.835 Sum_probs=113.3
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCC-----------CCCCCCcc
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAI 69 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~-----------~~~W~p~~ 69 (121)
|+|.|.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+++|+||+++|.. .+.|+|.+
T Consensus 35 F~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ 114 (165)
T KOG0426|consen 35 FEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ 114 (165)
T ss_pred eeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHH
Confidence 6899999999999999999999999999999999999999999999999999999999975 27899999
Q ss_pred cHHHHHHHHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 70 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 70 ~i~~il~~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
+++.||+++.+||.+||.++.+|-+|+.++++||++|++.||..+.|.
T Consensus 115 SvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 115 SVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred HHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999885
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=207.64 Aligned_cols=117 Identities=32% Similarity=0.706 Sum_probs=112.1
Q ss_pred EeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeC-CCceeecCCCCCCCCCCcccHHHHHHH-HH
Q 033359 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQ 79 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~-i~ 79 (121)
+.++.+.||.+|||+||++++++.+|++||++.|.|.|+++||||||+. .|.||++.++. .|+|.+.+..|+.. |-
T Consensus 31 ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLP 108 (189)
T KOG0416|consen 31 EFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQ--TWSPLYDLVNIFETFLP 108 (189)
T ss_pred EEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhh--hhhHHHHHHHHHHHHhH
Confidence 5789999999999999999999999999999999999999999999996 89999999999 89999999999975 77
Q ss_pred HhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCCC
Q 033359 80 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 120 (121)
Q Consensus 80 ~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~~ 120 (121)
+||..||+.+|+|.+||.+|.+++++|++++|++++|||.|
T Consensus 109 QLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 109 QLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 88899999999999999999999999999999999999975
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-37 Score=201.72 Aligned_cols=114 Identities=39% Similarity=0.715 Sum_probs=109.4
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
|+|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|+.||||||..|.||+++|.+ .|+..+++.+||++||+
T Consensus 59 f~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQS 136 (175)
T KOG0421|consen 59 FKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKD--KWSAVYDVRTILLSIQS 136 (175)
T ss_pred eEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHH--HHHHHHhHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
+|-+|+.++|+|..||+++. |.++|++.+.+.-++.
T Consensus 137 LLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 137 LLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred HhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 99999999999999999998 8999999998766543
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-36 Score=196.03 Aligned_cols=118 Identities=31% Similarity=0.707 Sum_probs=114.3
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
+.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.|.+|++++... +|.|++...+||++|.+
T Consensus 33 l~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~E-nWkP~T~teqVlqaLi~ 110 (153)
T KOG0422|consen 33 LKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAE-NWKPATRTEQVLQALIA 110 (153)
T ss_pred eeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecc-cccCcccHHHHHHHHHH
Confidence 47999998 89999999999999999999999999999999999999999999999999884 99999999999999999
Q ss_pred hhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCCC
Q 033359 81 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 120 (121)
Q Consensus 81 ~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~~ 120 (121)
++.+|+++.|++.++|..|.+|+..|.++|.++++||++.
T Consensus 111 liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 111 LINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred HhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999864
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-35 Score=196.31 Aligned_cols=114 Identities=31% Similarity=0.622 Sum_probs=109.1
Q ss_pred EeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHh
Q 033359 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 81 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~ 81 (121)
+.+++|. |.++-|.||.|.|.+.+|+.||++||+|+++|+|||||||.+|.||+++|.. +|+|..+|.+|+-.|+.+
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~L 137 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFL 137 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHH
Confidence 4678887 9999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred hcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 82 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 82 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
|.+|+.++|+|.+||.++++|++.|+..||+....++
T Consensus 138 F~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 138 FLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred hccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999998776543
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.9e-32 Score=182.59 Aligned_cols=115 Identities=31% Similarity=0.665 Sum_probs=111.7
Q ss_pred EEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHhhc
Q 033359 4 ECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 83 (121)
Q Consensus 4 ~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~ 83 (121)
.+.|.||.||||++|+|+.++.+..+||.+||+-.|+|+||||||-.+|.||...|.. +|+|...|..||..|..+|.
T Consensus 43 qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI 120 (223)
T KOG0423|consen 43 QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLI 120 (223)
T ss_pred HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhc--ccCcccchhhHhhhhheeee
Confidence 4679999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCCC
Q 033359 84 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 120 (121)
Q Consensus 84 ~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~~ 120 (121)
.|++++.+|++|.+++.++.++|.+.||-+++-+++|
T Consensus 121 ~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 121 EPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred cCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999988875
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.8e-24 Score=137.69 Aligned_cols=90 Identities=29% Similarity=0.687 Sum_probs=81.4
Q ss_pred EeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCC-CcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i-~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
+|.+.+.|.+||.|+|.+|.+.+.||+.||++.|+|.|..++ .||+|+.||.||+++|.+ +|+|++++.+|+++|.+
T Consensus 45 qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlS 122 (161)
T KOG0427|consen 45 QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILS 122 (161)
T ss_pred eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecc--cCCcchhhHHHHHHHHH
Confidence 699999999999999999999999999999999999999764 799999999999999999 89999999999999999
Q ss_pred hhcC-CCCCCCcCH
Q 033359 81 LLDQ-PNPADPAQT 93 (121)
Q Consensus 81 ~l~~-p~~~~~~n~ 93 (121)
||.. ..-..|.+.
T Consensus 123 MLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 123 MLSSSKEKQRPTDN 136 (161)
T ss_pred HHccCccccCCCcc
Confidence 9954 333444433
No 19
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-23 Score=147.68 Aligned_cols=116 Identities=24% Similarity=0.469 Sum_probs=106.1
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCC--CCCcceecCCCCcceeeC-CCceeecCCCCCCCCCCcc-cHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI-TVKQILV 76 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~--~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~~-~i~~il~ 76 (121)
|.|-++|++ +.|.|.||+|+|+|.+|++||. .-|+|.|.+.+|||+|.+ ++.+|++.... .|+..- +|..||.
T Consensus 49 l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~--eWRk~ehhiwqvL~ 125 (258)
T KOG0429|consen 49 LLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFP--EWRKEEHHIWQVLV 125 (258)
T ss_pred ceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhh--hhhccccHHHHHHH
Confidence 589999995 6679999999999999999994 489999999999999996 89999999888 698775 9999999
Q ss_pred HHHHhhcCCCCCCC--cCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 77 GIQDLLDQPNPADP--AQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 77 ~i~~~l~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
.||.+|.+|+.+.+ .|++|+.+|++++++|.++|+++++.+.+
T Consensus 126 ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 126 YLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred HHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998765 59999999999999999999999997654
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.9e-23 Score=144.99 Aligned_cols=86 Identities=30% Similarity=0.670 Sum_probs=75.9
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCC--CCcceeeCCCceeecCCCC-CCCCCCcccHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVG 77 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~--i~Hpnv~~~G~ic~~~l~~-~~~W~p~~~i~~il~~ 77 (121)
++||.+|.||+||||+||.|+.+|.||++||++||.|+..|+ .|.+| .++|+++-+. .++|+|++++++||..
T Consensus 35 LEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtG 110 (244)
T KOG0894|consen 35 LEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTG 110 (244)
T ss_pred eeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecC----ceEEEeccccCcCcCCCcccHHHHHHH
Confidence 589999999999999999999999999999999999999985 56655 7999999875 3589999999999999
Q ss_pred HHHhhcC--CCCCCC
Q 033359 78 IQDLLDQ--PNPADP 90 (121)
Q Consensus 78 i~~~l~~--p~~~~~ 90 (121)
|.++|.+ |...+.
T Consensus 111 LlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 111 LLSFMTEDSPTTGSI 125 (244)
T ss_pred HHHHHhcCCCccCcc
Confidence 9999955 444443
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.6e-18 Score=120.77 Aligned_cols=84 Identities=26% Similarity=0.579 Sum_probs=72.5
Q ss_pred CEeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCC-CCCCCCcccHHHHHHHHH
Q 033359 1 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQ 79 (121)
Q Consensus 1 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~-~~~W~p~~~i~~il~~i~ 79 (121)
|+|+++|.||.||-||||+|+.+|.||.+||++||.+..+|+- -.+.-+.+||+++-.. .+.|.|+++|.+.|.+|.
T Consensus 40 FEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlI 117 (314)
T KOG0428|consen 40 FEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFEVNKKICLSISGYHPETWQPSWSIRTALLALI 117 (314)
T ss_pred eeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--CceeeCceEEEEecCCCccccCcchhHHHHHHHHH
Confidence 7899999999999999999999999999999999999988862 2223357899999875 479999999999999999
Q ss_pred Hhh-cCCC
Q 033359 80 DLL-DQPN 86 (121)
Q Consensus 80 ~~l-~~p~ 86 (121)
.+| ..|+
T Consensus 118 gFmPt~p~ 125 (314)
T KOG0428|consen 118 GFMPTKPE 125 (314)
T ss_pred ccccCCCC
Confidence 998 3343
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.2e-18 Score=139.23 Aligned_cols=87 Identities=38% Similarity=0.762 Sum_probs=78.2
Q ss_pred EEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCC--CCcceeeCCCceeecCCCCC-----CCCCCcccHHHHHH
Q 033359 4 ECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNED-----NGWRPAITVKQILV 76 (121)
Q Consensus 4 ~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~--i~Hpnv~~~G~ic~~~l~~~-----~~W~p~~~i~~il~ 76 (121)
+++|.||.||||.+|.|.|.|.||++||.+||.|...+. .++||.|++|+||+++|+.+ +.|+|+.++.++|.
T Consensus 884 ~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~ 963 (1101)
T KOG0895|consen 884 RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLV 963 (1101)
T ss_pred HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHH
Confidence 357889999999999999999999999999999999874 68999999999999999984 78999999999999
Q ss_pred HHHHhhcC--CCCCCC
Q 033359 77 GIQDLLDQ--PNPADP 90 (121)
Q Consensus 77 ~i~~~l~~--p~~~~~ 90 (121)
+||.|+.+ |.++++
T Consensus 964 s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 964 SIQGLVLNEEPYFNEA 979 (1101)
T ss_pred HhhhhhcccccccCcc
Confidence 99999843 555444
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.3e-14 Score=92.51 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=73.1
Q ss_pred EeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCCcceeeC-CCceeecCCCCCCCCCCcccHHHHHHHHHH
Q 033359 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQD 80 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 80 (121)
.|.++|.||+.|+||+.+|.++|...++||..||.|+|.+++.-..|+. +|.+.-..+..-++|.-.+++..+|..+..
T Consensus 40 rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 40 RWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRK 119 (138)
T ss_pred eeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhH
Confidence 5999999999999999999999999999999999999999999999985 777776555533479999999999999997
Q ss_pred hhc
Q 033359 81 LLD 83 (121)
Q Consensus 81 ~l~ 83 (121)
++.
T Consensus 120 ~m~ 122 (138)
T KOG0896|consen 120 EMM 122 (138)
T ss_pred HHH
Confidence 764
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-13 Score=114.19 Aligned_cols=82 Identities=35% Similarity=0.731 Sum_probs=75.6
Q ss_pred eEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCC---CCcceeeCCCceeecCCCCC-----CCCCCc-ccHHH
Q 033359 3 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---FFHPNVYPSGTVCLSILNED-----NGWRPA-ITVKQ 73 (121)
Q Consensus 3 W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~---i~Hpnv~~~G~ic~~~l~~~-----~~W~p~-~~i~~ 73 (121)
-+++|.||.||||++|+|.|.|.||..||..||.+.+++. .+.||.|.+|+||+++|..+ +.|+|. .++.+
T Consensus 314 I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~q 393 (1101)
T KOG0895|consen 314 IKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQ 393 (1101)
T ss_pred eeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhh
Confidence 4688999999999999999999999999999999999986 68999999999999999873 579999 79999
Q ss_pred HHHHHHHhhcC
Q 033359 74 ILVGIQDLLDQ 84 (121)
Q Consensus 74 il~~i~~~l~~ 84 (121)
+|.+||.++.+
T Consensus 394 vL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 394 VLESIQGLILN 404 (1101)
T ss_pred hhhhhhhhhcc
Confidence 99999999954
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.77 E-value=4e-08 Score=65.42 Aligned_cols=67 Identities=31% Similarity=0.664 Sum_probs=59.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCcceecCCC---CcceeeCCCceee---cCCCCCCCCCCcccHHHHHHHHHHhhcC
Q 033359 16 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLDQ 84 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP~~pP~v~f~t~i---~Hpnv~~~G~ic~---~~l~~~~~W~p~~~i~~il~~i~~~l~~ 84 (121)
.|+.+.+.|.+|++||..||.|....+. +=|||+.+|.+|+ ...-. .|+|...+..+|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887544 6899999999999 66555 799999999999999999973
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=63.76 Aligned_cols=90 Identities=22% Similarity=0.438 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCCCCCcceecCCC-CcceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHhhcCCC--CCCCcCHHHHH
Q 033359 21 PLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTDGYQ 97 (121)
Q Consensus 21 ~~~i~f~~~yP~~pP~v~f~t~i-~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~--~~~~~n~~a~~ 97 (121)
-+.+.|+++||+.||.+|...++ -.-.|-.+|.||+.+|... .|+.+++++.++.+|..++..-. ...+++.+..
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 35678999999999999866442 2333445899999999985 89999999999999999997644 3444544433
Q ss_pred HHhh--CHHHHHHHHHH
Q 033359 98 LFIQ--DPAEYKRRVRQ 112 (121)
Q Consensus 98 ~~~~--~~~~f~~~~~~ 112 (121)
+|.. --+.|+..++-
T Consensus 92 ~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 4433 23455555543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.61 E-value=6.1e-08 Score=63.62 Aligned_cols=67 Identities=21% Similarity=0.508 Sum_probs=48.9
Q ss_pred CCCCCEEE--EEEEcCCCCCCCCCcceecCCC-----CcceeeCCCceeecCCCCCCCCCC-cccHHHHHHHHHHhhc
Q 033359 14 DWEGGYFP--LTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD 83 (121)
Q Consensus 14 py~gg~f~--~~i~f~~~yP~~pP~v~f~t~i-----~Hpnv~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~~l~ 83 (121)
.|.|..|. +.|.+|.+||.+||.+...... -+.+||.+|+|.++.|.. |++ +.++.+++..|.+.|.
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS-HHHHHHHHHHCCC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCCCHHHHHHHHHHHHh
Confidence 47788775 6678899999999999775432 144999999999999987 988 6799999999998884
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00016 Score=54.57 Aligned_cols=70 Identities=21% Similarity=0.523 Sum_probs=57.0
Q ss_pred CCCCCCCEEE--EEEEcCCCCCCCCCcceecCC-----CCcceeeCCCceeecCCCCCCCCCCc-ccHHHHHHHHHHhhc
Q 033359 12 GTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLD 83 (121)
Q Consensus 12 ~tpy~gg~f~--~~i~f~~~yP~~pP~v~f~t~-----i~Hpnv~~~G~ic~~~l~~~~~W~p~-~~i~~il~~i~~~l~ 83 (121)
-.+|.|.+|. +.|.+.+.||..||.+..... -.|-+||.+|.|.++.|.. |.+. +++..++..|.+.|.
T Consensus 60 p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~pssdLv~Liq~l~a~f~ 136 (365)
T KOG2391|consen 60 PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDPPSSDLVGLIQELIAAFS 136 (365)
T ss_pred cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCCccchHHHHHHHHHHHhc
Confidence 3578888877 567789999999999866531 2389999999999999987 9765 588899998888885
Q ss_pred C
Q 033359 84 Q 84 (121)
Q Consensus 84 ~ 84 (121)
+
T Consensus 137 ~ 137 (365)
T KOG2391|consen 137 E 137 (365)
T ss_pred C
Confidence 5
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.24 E-value=0.063 Score=35.25 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCC-------cceeeC-----CCceeecCCCCCCCCCCcc-cHHHHHH
Q 033359 10 KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF-------HPNVYP-----SGTVCLSILNEDNGWRPAI-TVKQILV 76 (121)
Q Consensus 10 p~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~-------Hpnv~~-----~G~ic~~~l~~~~~W~p~~-~i~~il~ 76 (121)
.+.+.|.+..-.+.|.+|..||..+|-+.+..+-. .|+=.. .|+.--........|+|.. +|.+.|.
T Consensus 34 LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~ 113 (122)
T PF14462_consen 34 LPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLA 113 (122)
T ss_pred CCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHH
Confidence 45667999999999999999999998876654322 121100 1221111111123799987 8999888
Q ss_pred HHHHhhc
Q 033359 77 GIQDLLD 83 (121)
Q Consensus 77 ~i~~~l~ 83 (121)
.|...|.
T Consensus 114 ~v~~~L~ 120 (122)
T PF14462_consen 114 RVEHALA 120 (122)
T ss_pred HHHHHHh
Confidence 8887763
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.67 E-value=0.021 Score=39.30 Aligned_cols=62 Identities=24% Similarity=0.389 Sum_probs=49.0
Q ss_pred EEEEcCCCCCCCCCcceecCCCC---cceeeCC-----CceeecCCCCCCCCCCcccHHHHHHHHHHhhcC
Q 033359 22 LTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 84 (121)
Q Consensus 22 ~~i~f~~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~ 84 (121)
+.|.|+.+||..+|.|.++-..| +||++.. ..+|+---.-. .|.+..++..+|..|...|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-EWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-HhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999877665443 5777654 67998766553 799999999999999999844
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.86 E-value=0.035 Score=37.29 Aligned_cols=66 Identities=27% Similarity=0.558 Sum_probs=30.5
Q ss_pred CCCCCCCCCCE----------EEEEEEcCCCCCCCCCcceecCCC-CcceeeCCCceeecCCCCCCCC---CCcccHHHH
Q 033359 9 GKTGTDWEGGY----------FPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNGW---RPAITVKQI 74 (121)
Q Consensus 9 Gp~~tpy~gg~----------f~~~i~f~~~yP~~pP~v~f~t~i-~Hpnv~~~G~ic~~~l~~~~~W---~p~~~i~~i 74 (121)
-+.||-|.|.+ |.+++.+|..||..+|.|....-- --.-.|..|+||++.-... -| .|...|...
T Consensus 56 n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHa 134 (161)
T PF08694_consen 56 NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHA 134 (161)
T ss_dssp -TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHH
T ss_pred CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHH
Confidence 35666666643 345566799999999999764311 1123355799999876542 35 345566654
Q ss_pred H
Q 033359 75 L 75 (121)
Q Consensus 75 l 75 (121)
|
T Consensus 135 l 135 (161)
T PF08694_consen 135 L 135 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.67 E-value=0.1 Score=32.48 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.3
Q ss_pred CEEEEEEEcCCCCCCCCCcceecC
Q 033359 18 GYFPLTLYFSEDYPSKPPKCKFPQ 41 (121)
Q Consensus 18 g~f~~~i~f~~~yP~~pP~v~f~t 41 (121)
-.+.+.+.+|++||..+|.|.+.+
T Consensus 41 ~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 41 VSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred eEEEEEEECCCCCCCCCCCeEEEC
Confidence 458899999999999999987654
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.41 E-value=0.069 Score=33.50 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEEEcCCCCCCCCCcceecC
Q 033359 13 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 41 (121)
Q Consensus 13 tpy~gg~f~~~i~f~~~yP~~pP~v~f~t 41 (121)
+.-....+.+.+.||++||..+|.|...+
T Consensus 44 ~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 44 ESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp TTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred ccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 33445688999999999999999997543
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=88.83 E-value=0.7 Score=32.04 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=28.5
Q ss_pred cCCCCc---ceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHhhcCCCCCCC
Q 033359 40 PQGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 90 (121)
Q Consensus 40 ~t~i~H---pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~~ 90 (121)
.|+.|| +||+.+|+||+..... |.......+..+.+.|.+....++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHHhCCCccCC
Confidence 455666 7889999999987544 344444556666666644333333
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=87.02 E-value=2.1 Score=32.74 Aligned_cols=60 Identities=25% Similarity=0.558 Sum_probs=42.0
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCcceec-CCCCcceeeCCCceeecCCCCCCCCCCcc--cHHHHHHHHHHh
Q 033359 14 DWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNGWRPAI--TVKQILVGIQDL 81 (121)
Q Consensus 14 py~gg~f~~~i~f~~~yP~~pP~v~f~-t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~--~i~~il~~i~~~ 81 (121)
||.|...+-.|.|...+|..||-+.|. ..-|+|..+ . ++.|. +|++.- .+..++..|...
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L~---~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSLV---NWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchhh---cCCCCCchHHHHHHHHHHHH
Confidence 688888888999999999999999996 445888432 1 23343 588774 555555555443
No 36
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.77 E-value=2.9 Score=27.81 Aligned_cols=60 Identities=25% Similarity=0.511 Sum_probs=37.5
Q ss_pred cCCCCCCCCCCE----------EEEEEEcCCCCCCCCCcceecCCCC-cceeeCCCceeecCCCCCCCCCCc
Q 033359 8 PGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKCKFPQGFF-HPNVYPSGTVCLSILNEDNGWRPA 68 (121)
Q Consensus 8 ~Gp~~tpy~gg~----------f~~~i~f~~~yP~~pP~v~f~t~i~-Hpnv~~~G~ic~~~l~~~~~W~p~ 68 (121)
..++||-|-|.+ |.+++.+|-.||-.+|.+....--- -.-.+..|+||+.--... -|...
T Consensus 58 sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkp-lwarn 128 (167)
T KOG3357|consen 58 SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKP-LWARN 128 (167)
T ss_pred cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccch-hhhhc
Confidence 446777777754 3455566999999999987532110 112245699999866553 56543
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=74.96 E-value=5.9 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=28.8
Q ss_pred CCCCc---ceeeCCCceeecCCCCCCCCCCcc-cHHHHHHHHHHhhcCCCCCC
Q 033359 41 QGFFH---PNVYPSGTVCLSILNEDNGWRPAI-TVKQILVGIQDLLDQPNPAD 89 (121)
Q Consensus 41 t~i~H---pnv~~~G~ic~~~l~~~~~W~p~~-~i~~il~~i~~~l~~p~~~~ 89 (121)
|+.|| +||+.+|+||+.... .|.. ++.+ +....+.|.+-.+.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~S~FTH 177 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFSSRFTH 177 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhCCcccC
Confidence 34555 688889999998654 3443 6666 888888876544433
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=66.64 E-value=5.6 Score=28.62 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=18.2
Q ss_pred EEEEEEEcCCCCCCCCCcce
Q 033359 19 YFPLTLYFSEDYPSKPPKCK 38 (121)
Q Consensus 19 ~f~~~i~f~~~yP~~pP~v~ 38 (121)
.+.+.+.++++||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 68889999999999999993
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=60.12 E-value=11 Score=25.19 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=21.3
Q ss_pred CCEEEEEEEcCCCCC-CCCCcceec
Q 033359 17 GGYFPLTLYFSEDYP-SKPPKCKFP 40 (121)
Q Consensus 17 gg~f~~~i~f~~~yP-~~pP~v~f~ 40 (121)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 489999999999999 999998764
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=58.28 E-value=12 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCcceec
Q 033359 16 EGGYFPLTLYFSEDYPSKPPKCKFP 40 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP~~pP~v~f~ 40 (121)
+.|.|.|+-.+|--||.++|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4589999999999999999999774
No 41
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.83 E-value=20 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=24.2
Q ss_pred EEecCCCCCCCCCCEE-EEEEEcCCCCCCC-CCcceecC
Q 033359 5 CIIPGKTGTDWEGGYF-PLTLYFSEDYPSK-PPKCKFPQ 41 (121)
Q Consensus 5 ~~i~Gp~~tpy~gg~f-~~~i~f~~~yP~~-pP~v~f~t 41 (121)
+.+-||-... +|.+| ++.|.||.+||.+ +|.+.|..
T Consensus 453 vsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 453 VSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred EEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 3455544333 44444 6788999999987 78888864
No 42
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=56.94 E-value=8.2 Score=29.05 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=32.1
Q ss_pred EEEEEEEcCCCCCCCCCcceecCCCCcceeeCCCceeecCCCCCCCCCC-cccHHHHHHHHHHhhc
Q 033359 19 YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD 83 (121)
Q Consensus 19 ~f~~~i~f~~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~~l~ 83 (121)
.-.++|.++.+||.++|.+...-++ .. .. .|.+ ..++.+++...+..+.
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~~P~-~~-------------~~--~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLDLPI-PF-------------SL--SWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-TTS--H-------------HH--HHHCHT-SHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCceeeCCCCc-ch-------------hh--hhcccccCHHHHHHHHHHHHH
Confidence 4567899999999999976543222 11 11 5888 6788888777666653
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.53 E-value=18 Score=24.62 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCEEEEEEEcCCCCC-----CCCCcceec
Q 033359 17 GGYFPLTLYFSEDYP-----SKPPKCKFP 40 (121)
Q Consensus 17 gg~f~~~i~f~~~yP-----~~pP~v~f~ 40 (121)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 789998764
No 44
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=50.18 E-value=42 Score=19.60 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=31.5
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 77 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 77 ~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
.|+.++..-++...+.++|...+.+--+.|...+-+.+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555666778999999998888888887777766554
No 45
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=46.52 E-value=39 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.5
Q ss_pred CCCCEEEEEEEcCCCCCCCCCcceecCC
Q 033359 15 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 42 (121)
Q Consensus 15 y~gg~f~~~i~f~~~yP~~pP~v~f~t~ 42 (121)
-||..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46888889988899999 599988764
No 46
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=46.36 E-value=55 Score=19.69 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 88 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 88 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
.+|-+.+|-..|..-.++..+..+++.++|.+
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46778999999988888888888888888875
No 47
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=44.53 E-value=24 Score=22.42 Aligned_cols=19 Identities=37% Similarity=0.863 Sum_probs=16.8
Q ss_pred EeEEEecCCCCCCCCCCEEEE
Q 033359 2 IWECIIPGKTGTDWEGGYFPL 22 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~ 22 (121)
+|+|.|=| +..|+|-.|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 79999987 77999999977
No 48
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=43.33 E-value=37 Score=26.07 Aligned_cols=40 Identities=13% Similarity=0.369 Sum_probs=29.5
Q ss_pred EeEEEecCCCCC-CCCCCEEEEEEEcC--CCCCCCCCcceecC
Q 033359 2 IWECIIPGKTGT-DWEGGYFPLTLYFS--EDYPSKPPKCKFPQ 41 (121)
Q Consensus 2 ~W~~~i~Gp~~t-py~gg~f~~~i~f~--~~yP~~pP~v~f~t 41 (121)
+|+..+.|-.++ -|++|.+++++.-. ++-=.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 578899997777 89999999888631 33345577999853
No 49
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=42.38 E-value=64 Score=18.77 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=28.4
Q ss_pred HHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 77 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 77 ~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
.|+.++..-++...+++++..++.+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788777888889999999888878888877776665543
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.93 E-value=29 Score=26.74 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCCCCCcceecC
Q 033359 20 FPLTLYFSEDYPSKPPKCKFPQ 41 (121)
Q Consensus 20 f~~~i~f~~~yP~~pP~v~f~t 41 (121)
|-+.|.+|..||...|.++|.+
T Consensus 308 flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 308 FLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEeccCCCCCcCCeEEEEe
Confidence 4455667999999999999865
No 51
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.67 E-value=8.1 Score=27.34 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.0
Q ss_pred CCceeecCCCCCCCCCCcccHHHHHHHHHHhhcC
Q 033359 51 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 84 (121)
Q Consensus 51 ~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~ 84 (121)
.+..|+++++. .|+|.+|..+.+.-++.++.+
T Consensus 135 ~~~f~~sIlDr--~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDR--YYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHh--hhCCCCCHHHHHHHHHHHHHH
Confidence 46799999999 899999999887777666543
No 52
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=38.81 E-value=29 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCCcCHHHHHHHhhCHHHHHHHHHHHHHHcCC
Q 033359 88 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 119 (121)
Q Consensus 88 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~~ 119 (121)
..-.+.+++..|.++++.|...+.+.+++.++
T Consensus 236 y~F~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 236 YAFSSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred EEeCCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 34568999999999999999999999988754
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=36.61 E-value=40 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.6
Q ss_pred CCEEEEEEEcCCCCCC-----CCCccee
Q 033359 17 GGYFPLTLYFSEDYPS-----KPPKCKF 39 (121)
Q Consensus 17 gg~f~~~i~f~~~yP~-----~pP~v~f 39 (121)
.|.|.|+-..|-.||. .||.|.|
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~ 123 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINV 123 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEE
Confidence 4889999999999998 6666644
No 54
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.98 E-value=43 Score=23.51 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=17.7
Q ss_pred CCEEEEEEEcCCCCCC-----CCCccee
Q 033359 17 GGYFPLTLYFSEDYPS-----KPPKCKF 39 (121)
Q Consensus 17 gg~f~~~i~f~~~yP~-----~pP~v~f 39 (121)
.|.|.|+-.+|--||. .||.|.|
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~ 119 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINV 119 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEE
Confidence 4889999999999995 5665533
No 55
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=34.59 E-value=46 Score=18.88 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=11.9
Q ss_pred CCCCcccHHHHHHHHHHhh
Q 033359 64 GWRPAITVKQILVGIQDLL 82 (121)
Q Consensus 64 ~W~p~~~i~~il~~i~~~l 82 (121)
+|.|.++|.++|...-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998765544
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.35 E-value=54 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.1
Q ss_pred CEEEEEEEcCCCCCCCCCcceecCC
Q 033359 18 GYFPLTLYFSEDYPSKPPKCKFPQG 42 (121)
Q Consensus 18 g~f~~~i~f~~~yP~~pP~v~f~t~ 42 (121)
-++.+.++.++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3677888899999999999988653
No 57
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.73 E-value=46 Score=23.98 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=41.9
Q ss_pred CCCCcceecCCCCcceee--CCCceeecCCCCCCCCCCcccHHHHHHHHHHhhcCCCCC
Q 033359 32 SKPPKCKFPQGFFHPNVY--PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA 88 (121)
Q Consensus 32 ~~pP~v~f~t~i~Hpnv~--~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~ 88 (121)
..||.|.|-.+.|...|+ +.|-|-..+.+.+..--|+..+.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999999988 356555555555323367789999999999988666543
No 58
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=30.51 E-value=87 Score=17.69 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.0
Q ss_pred cCHHHHHHHhhCHHHHHHHHHH
Q 033359 91 AQTDGYQLFIQDPAEYKRRVRQ 112 (121)
Q Consensus 91 ~n~~a~~~~~~~~~~f~~~~~~ 112 (121)
.|++...+..+|+++|.+...+
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLNE 55 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHHS
T ss_pred cCHHHHHHHHHCHHHHHHHHcC
Confidence 5999999999999999887653
No 59
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=30.28 E-value=68 Score=18.96 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=24.4
Q ss_pred ceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHhhcC
Q 033359 46 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 84 (121)
Q Consensus 46 pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~ 84 (121)
--|+++|.|.++.+.. -=-.+.|+.++=..|...+..
T Consensus 33 ~~V~~dG~I~lP~iG~--v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 33 YTVDPDGTISLPLIGP--VKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp EE--TTSEEEETTTEE--EE-TT--HHHHHHHHHHHHTT
T ss_pred eEECCCCcEeecccce--EEECCCCHHHHHHHHHHHHHH
Confidence 3478899999999977 345567888887777777754
No 60
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=30.25 E-value=49 Score=27.43 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCCCCCEEEEEEEcCCCCCCC---CCcceecCC
Q 033359 13 TDWEGGYFPLTLYFSEDYPSK---PPKCKFPQG 42 (121)
Q Consensus 13 tpy~gg~f~~~i~f~~~yP~~---pP~v~f~t~ 42 (121)
+||.=|.|.+ +.+|++||+. -|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5788888887 4568889984 799999986
No 61
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=28.89 E-value=1.2e+02 Score=18.40 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHH
Q 033359 93 TDGYQLFIQDPAEYKRRVRQQAKQ 116 (121)
Q Consensus 93 ~~a~~~~~~~~~~f~~~~~~~~~k 116 (121)
.+...++++|+++|.+..++.++.
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 356678899999998888777653
No 62
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=27.22 E-value=70 Score=24.10 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=13.9
Q ss_pred CCCEEEEEEEcCCCCC
Q 033359 16 EGGYFPLTLYFSEDYP 31 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP 31 (121)
+.|.|.|+-..|.-||
T Consensus 179 ~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 179 AEGRYRARSIVPSGYG 194 (285)
T ss_pred CCCCEEEEEECCCCCc
Confidence 3589999999999997
No 63
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=98 Score=21.19 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=25.9
Q ss_pred cceeeCCCceeecCCCCCCCCCCcccHHHHHHHHHHh
Q 033359 45 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 81 (121)
Q Consensus 45 Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~ 81 (121)
.--|+++|+|.... . ++++.-+...++..|..+
T Consensus 123 TfvId~dG~I~~~~--~--~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 123 TFVIDPDGKIRYVW--R--KVKVKGHADEVLAALKKL 155 (157)
T ss_pred EEEECCCCeEEEEe--c--CCCCcccHHHHHHHHHHh
Confidence 34567889998876 3 578888999999888775
No 64
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.14 E-value=98 Score=16.25 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=15.3
Q ss_pred hCHHHHHHHHHHHHHHcC
Q 033359 101 QDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 101 ~~~~~f~~~~~~~~~k~~ 118 (121)
+|.-.|.++++..+.+|.
T Consensus 13 ~Dp~~yi~~i~~~~~~yG 30 (42)
T smart00545 13 KDPLAYISKIRPQAEKYG 30 (42)
T ss_pred HCHHHHHHHHHHHHhhCC
Confidence 478899999999988875
No 65
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=26.12 E-value=1.1e+02 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.4
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 92 QTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 92 n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
-.++.++..+|++.|.+.++++..++
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rh 296 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARH 296 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 35667777889999999999988765
No 66
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=25.38 E-value=25 Score=17.42 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=9.9
Q ss_pred CCcceeeCCCc-eeecCC
Q 033359 43 FFHPNVYPSGT-VCLSIL 59 (121)
Q Consensus 43 i~Hpnv~~~G~-ic~~~l 59 (121)
.|||.+..+|+ .|-...
T Consensus 2 ~yHPg~~~~g~W~CC~q~ 19 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQT 19 (32)
T ss_dssp EE-SS-EETTCESSSS-S
T ss_pred CcCCCcccCCcCcCCCCc
Confidence 48999998887 555443
No 67
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=24.61 E-value=83 Score=23.61 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.4
Q ss_pred CCCEEEEEEEcCCCCCC
Q 033359 16 EGGYFPLTLYFSEDYPS 32 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP~ 32 (121)
+.|.|.|.-..|.-||.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 171 EDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCCCEEEEEECCCCcCC
Confidence 36899999999999983
No 68
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=24.34 E-value=1.5e+02 Score=19.71 Aligned_cols=31 Identities=6% Similarity=0.206 Sum_probs=20.1
Q ss_pred CcCHHHHHHHhhCH-------HHHHHHHHHHHHHcCCCC
Q 033359 90 PAQTDGYQLFIQDP-------AEYKRRVRQQAKQYPPVI 121 (121)
Q Consensus 90 ~~n~~a~~~~~~~~-------~~f~~~~~~~~~k~~~~~ 121 (121)
-.||+....+..++ +.|...+++++ ++..||
T Consensus 39 r~sPELrkr~~~~r~~Rq~e~~~~~~~lKe~s-kSdkPI 76 (128)
T PF07960_consen 39 RYSPELRKRYLENRELRQQEFDEFMKILKETS-KSDKPI 76 (128)
T ss_pred hcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-ccCCCc
Confidence 46888888776554 46777777766 444444
No 69
>PRK05414 urocanate hydratase; Provisional
Probab=23.75 E-value=1.2e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.1
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 92 QTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 92 n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
-.++..+..+|++.|.+.|+++..++
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 306 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARH 306 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45777788899999999999988775
No 70
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.71 E-value=1.2e+02 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 92 QTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 92 n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
-.++.++..+|++.|.+.|+++..++
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 297 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKH 297 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45777788889999999999988765
No 71
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=23.15 E-value=1.8e+02 Score=20.08 Aligned_cols=53 Identities=13% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCCcc-cHHHHHHHHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 65 WRPAI-TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 65 W~p~~-~i~~il~~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
..|.+ ++.+++..|..+|.....+-..-..+-..|+.|+.++.+.|+.---+|
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 45554 788889999998864332211111223356778888777776544444
No 72
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=23.09 E-value=93 Score=23.97 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=19.4
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHHcCCC
Q 033359 92 QTDGYQLFIQDPAEYKRRVRQQAKQYPPV 120 (121)
Q Consensus 92 n~~a~~~~~~~~~~f~~~~~~~~~k~~~~ 120 (121)
+.+++..|.+.-+.=+++||+.+.|++.|
T Consensus 310 dk~s~~~f~k~LD~EEekaRkls~k~~~p 338 (358)
T PF08405_consen 310 DKNSGAAFMKTLDMEEEKARKLSTKSASP 338 (358)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHhhccCCC
Confidence 44555555555555578888888888775
No 73
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.95 E-value=87 Score=23.16 Aligned_cols=49 Identities=8% Similarity=0.203 Sum_probs=35.1
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 64 GWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 64 ~W~p~~~i~~il~~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
-|-.-..+..++..|..-|..- +++-+..|++|-+.|.++.++.-+++.
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~------dP~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSAL------DPDNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667778888888888633 344456888888888888877666543
No 74
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=22.75 E-value=1.3e+02 Score=15.88 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=15.6
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 93 TDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 93 ~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
.+|-..+.+=+--..+++|..+++||
T Consensus 3 ~eA~~~L~~iP~fvR~~~r~~~E~~A 28 (45)
T PF08369_consen 3 DEAEARLDRIPFFVRKKLRDAAEKYA 28 (45)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 34445555555555677787777775
No 75
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.61 E-value=91 Score=19.65 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=19.7
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHHc
Q 033359 92 QTDGYQLFIQDPAEYKRRVRQQAKQY 117 (121)
Q Consensus 92 n~~a~~~~~~~~~~f~~~~~~~~~k~ 117 (121)
.++++...++.++++++.|-..++|-
T Consensus 75 seeake~irq~rq~~EklAg~lTkki 100 (103)
T COG4847 75 SEEAKESIRQVRQEVEKLAGDLTKKI 100 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888877763
No 76
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=22.56 E-value=62 Score=15.88 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.9
Q ss_pred HhhCHHHHHHHHHHHHHHcC
Q 033359 99 FIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 99 ~~~~~~~f~~~~~~~~~k~~ 118 (121)
+..|...|+..|++.+=+.+
T Consensus 8 i~~d~~~Fr~lVQ~LTG~~~ 27 (31)
T PF05678_consen 8 IHTDPSNFRALVQRLTGAPS 27 (31)
T ss_pred EEeCHHHHHHHHHHhHCcCC
Confidence 45678899999998775443
No 77
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.52 E-value=97 Score=23.32 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=13.9
Q ss_pred CCCEEEEEEEcCCCCC
Q 033359 16 EGGYFPLTLYFSEDYP 31 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP 31 (121)
+.|.|.|+-..|.-||
T Consensus 175 ~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 175 ADGRYRFRSIMPSGYG 190 (282)
T ss_pred CCCCEEEEEECCCCCc
Confidence 3589999999999996
No 78
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=21.88 E-value=1.6e+02 Score=21.21 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=30.3
Q ss_pred eEEEecCCCCCCCCCCEEEEEEEcCCCC-------------------C---CCCCcceecC--CCCcceeeCCCc
Q 033359 3 WECIIPGKTGTDWEGGYFPLTLYFSEDY-------------------P---SKPPKCKFPQ--GFFHPNVYPSGT 53 (121)
Q Consensus 3 W~~~i~Gp~~tpy~gg~f~~~i~f~~~y-------------------P---~~pP~v~f~t--~i~Hpnv~~~G~ 53 (121)
|.+.+..-.+.-| || |.|.+.|.++= - ..-|.+.|.| .+.|-..++.+.
T Consensus 32 W~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 32 WKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred eEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEecCCceEEEEEeCCceEEEccCCCcc
Confidence 9999984333335 45 88888886543 1 2237777776 367877665433
No 79
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.59 E-value=1.2e+02 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CcceecC
Q 033359 12 GTDWEGGYFPLTLYFSEDYPSKP--PKCKFPQ 41 (121)
Q Consensus 12 ~tpy~gg~f~~~i~f~~~yP~~p--P~v~f~t 41 (121)
.+.+.|..|++-|..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 56788999999999999999877 9998876
No 80
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.53 E-value=1.6e+02 Score=17.79 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=14.3
Q ss_pred eEEEecCCCCCCCCCCEEEEEEEcC
Q 033359 3 WECIIPGKTGTDWEGGYFPLTLYFS 27 (121)
Q Consensus 3 W~~~i~Gp~~tpy~gg~f~~~i~f~ 27 (121)
|++.|.|. .+|..|.++|.-+
T Consensus 49 w~~~v~~~----~~g~~Y~y~i~~~ 69 (100)
T cd02860 49 WSVTLDGD----LEGYYYLYEVKVY 69 (100)
T ss_pred EEEEeCCc----cCCcEEEEEEEEe
Confidence 77777642 5677788877654
No 81
>PF15572 Imm26: Immunity protein 26
Probab=21.27 E-value=77 Score=19.93 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCcceecC---C---CCcceee----CCCceeecCCCC-CCCCCCcccHHHHHHHH
Q 033359 10 KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ---G---FFHPNVY----PSGTVCLSILNE-DNGWRPAITVKQILVGI 78 (121)
Q Consensus 10 p~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t---~---i~Hpnv~----~~G~ic~~~l~~-~~~W~p~~~i~~il~~i 78 (121)
+.+..+.|.+|++ |..||++ +.|.|+- . .-+-.+. ..|.+....-.+ ..++..+.+-.-++...
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV~e~~~~~~~~~L~v~sG~kAG~i~~~fP~Ea~~~~~~aiSt~Wli~NW 81 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMVFEDPDFGRGFGLVVISGYKAGLILVKFPKEAESKEGRAISTEWLIENW 81 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEEEeccCCCCceeEEEEeeEecceEEEeCCHHHhhcccccccHHHHHHHH
Confidence 3456677777765 5559999 6776652 1 1122221 245666443333 11333355666677776
Q ss_pred HHhh
Q 033359 79 QDLL 82 (121)
Q Consensus 79 ~~~l 82 (121)
+..+
T Consensus 82 ~kwi 85 (96)
T PF15572_consen 82 EKWI 85 (96)
T ss_pred HHhh
Confidence 6655
No 82
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=21.25 E-value=1.1e+02 Score=22.17 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=19.0
Q ss_pred CCEEEEEEEcCCCCCC-------CCCccee
Q 033359 17 GGYFPLTLYFSEDYPS-------KPPKCKF 39 (121)
Q Consensus 17 gg~f~~~i~f~~~yP~-------~pP~v~f 39 (121)
.|.|.|.-..|--||. .||.|.|
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~ 151 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHF 151 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEE
Confidence 5899999999999964 6888765
No 83
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.00 E-value=87 Score=21.81 Aligned_cols=47 Identities=9% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHHHH
Q 033359 64 GWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 116 (121)
Q Consensus 64 ~W~p~~~i~~il~~i~~~l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 116 (121)
-|..-..+..+...|..-|..-++ +-+..|++|.+.|.++.++.-++
T Consensus 110 ~Wldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~l~~l~~~ 156 (203)
T cd01145 110 VWLDPNNAPALAKALADALIELDP------SEQEEYKENLRVFLAKLNKLLRE 156 (203)
T ss_pred eecCHHHHHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 477777788888888888864333 23457777778777776655443
No 84
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=20.91 E-value=1e+02 Score=21.73 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=15.8
Q ss_pred EEEecCCCCCCCCCCEEEEEEEcCCC
Q 033359 4 ECIIPGKTGTDWEGGYFPLTLYFSED 29 (121)
Q Consensus 4 ~~~i~Gp~~tpy~gg~f~~~i~f~~~ 29 (121)
|+.+..+.++...|..++++|.+.++
T Consensus 1 h~yl~~~~gGl~~GD~l~~~i~v~~g 26 (209)
T PF01774_consen 1 HVYLMNPSGGLLGGDRLRIDITVGPG 26 (209)
T ss_dssp -EEEEE--S-B-TT-EEEEEEEE-TT
T ss_pred CEEEEeCCCcCcCCCEEEEEEEECCC
Confidence 45566799999999999999988764
No 85
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=20.79 E-value=1.1e+02 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.5
Q ss_pred CCCEEEEEEEcCCCCC
Q 033359 16 EGGYFPLTLYFSEDYP 31 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP 31 (121)
+.|.|.|+-..|..||
T Consensus 183 adG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQ 198 (281)
T ss_pred CCCCEEEEEECCCCcC
Confidence 3588999999998887
No 86
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=20.60 E-value=2.1e+02 Score=17.24 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=27.5
Q ss_pred EeEEEecCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecCCCC
Q 033359 2 IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 44 (121)
Q Consensus 2 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~yP~~pP~v~f~t~i~ 44 (121)
+|.+-|.|+.+..-..-+=++...+.+.|+. |...+..+-|
T Consensus 3 ~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 3 KWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred EEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 6999999998875555666788888888876 6655555533
No 87
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.55 E-value=1.6e+02 Score=16.83 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=22.2
Q ss_pred CcCHHHHHHHhhCHHHHHHHHHHHHHHcC
Q 033359 90 PAQTDGYQLFIQDPAEYKRRVRQQAKQYP 118 (121)
Q Consensus 90 ~~n~~a~~~~~~~~~~f~~~~~~~~~k~~ 118 (121)
-++.+++..+..+-+.+.+.+-+.+.+++
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777776654
No 88
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.54 E-value=1.1e+02 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=19.6
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCccee
Q 033359 16 EGGYFPLTLYFSEDYPS-------KPPKCKF 39 (121)
Q Consensus 16 ~gg~f~~~i~f~~~yP~-------~pP~v~f 39 (121)
+.|.|.|.-..|--||. .||.|.|
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~ 146 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHF 146 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEE
Confidence 35899999999999975 7888765
No 89
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.49 E-value=34 Score=29.55 Aligned_cols=20 Identities=35% Similarity=0.830 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCCCcceecC
Q 033359 22 LTLYFSEDYPSKPPKCKFPQ 41 (121)
Q Consensus 22 ~~i~f~~~yP~~pP~v~f~t 41 (121)
++|.+|.+||..+|.+.+.+
T Consensus 718 l~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp --------------------
T ss_pred eeEeCCCCCCccCCcCcccH
Confidence 55677888888888876644
Done!