Query 033360
Match_columns 121
No_of_seqs 128 out of 425
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 99.9 2.5E-24 8.4E-29 191.2 4.6 119 2-120 599-739 (751)
2 3eh2_A Protein transport prote 99.9 5.8E-23 2E-27 182.6 4.9 116 2-120 618-751 (766)
3 3efo_B SEC24 related gene fami 99.9 8.8E-23 3E-27 181.6 5.6 116 2-120 622-755 (770)
4 1pcx_A Protein transport prote 99.8 7E-22 2.4E-26 176.5 5.4 119 2-120 635-798 (810)
5 1m2v_B SEC24, protein transpor 99.8 1.6E-21 5.4E-26 176.7 3.5 119 2-120 751-914 (926)
6 1m2o_A SEC23, protein transpor 99.0 7.7E-11 2.6E-15 104.7 3.0 63 2-73 624-687 (768)
7 2nut_A Protein transport prote 98.9 3.8E-10 1.3E-14 100.4 3.9 55 2-65 622-676 (769)
8 1kcq_A Gelsolin, brevin, ADF, 98.0 9.4E-06 3.2E-10 55.5 4.9 49 5-59 3-51 (104)
9 3fg7_A Villin-1; actin binding 97.9 1.4E-05 4.9E-10 66.4 5.4 57 4-64 282-338 (398)
10 2fh1_A Gelsolin; calcium, cont 97.9 1.5E-05 5.2E-10 64.4 5.2 57 3-63 227-284 (344)
11 3fg6_A Adseverin, scinderin; C 97.8 2.3E-05 8E-10 64.3 5.4 58 5-66 270-328 (371)
12 1svq_A Severin; actin-binding; 97.8 1.7E-05 5.8E-10 55.2 3.6 49 5-59 13-61 (114)
13 1j72_A Macrophage capping prot 97.7 2.3E-05 7.8E-10 63.1 4.4 54 4-61 247-305 (347)
14 1d0n_A Horse plasma gelsolin; 97.6 5.9E-05 2E-09 66.7 4.6 53 3-59 612-665 (729)
15 1d0n_A Horse plasma gelsolin; 97.2 0.00016 5.5E-09 63.9 3.1 52 5-60 245-301 (729)
16 1j72_A Macrophage capping prot 96.7 0.0016 5.5E-08 52.3 4.6 34 26-59 151-184 (347)
17 2fh1_A Gelsolin; calcium, cont 96.5 0.0023 7.8E-08 51.6 4.5 33 27-59 143-175 (344)
18 3fg6_A Adseverin, scinderin; C 96.4 0.0034 1.2E-07 51.4 4.9 33 27-59 184-217 (371)
19 3fg7_A Villin-1; actin binding 95.4 0.0025 8.5E-08 52.9 0.0 34 26-59 196-229 (398)
20 1yd6_A UVRC; DNA binding prote 74.6 1.4 4.7E-05 29.8 1.7 31 36-66 15-46 (99)
21 1yd0_A Uvrabc system protein C 70.5 1.7 6E-05 29.2 1.5 21 36-57 15-35 (96)
22 2vik_A Villin 14T; actin-bindi 55.9 8.5 0.00029 26.8 2.9 32 30-61 35-74 (126)
23 3tu5_B Gelsolin, protein cordo 47.8 19 0.00064 28.6 4.0 30 30-59 52-90 (297)
24 3uma_A Hypothetical peroxiredo 42.7 21 0.00073 25.4 3.4 20 36-55 149-168 (184)
25 3mng_A Peroxiredoxin-5, mitoch 38.4 25 0.00086 24.8 3.1 21 35-55 137-157 (173)
26 3cip_G Gelsolin; actin, dictyo 36.3 21 0.0007 24.9 2.3 32 30-61 37-77 (128)
27 1t44_G Chimera of gelsolin dom 33.5 24 0.00082 25.1 2.3 32 30-61 34-74 (147)
28 2ff3_A Gelsolin; protein-prote 32.2 26 0.00088 25.2 2.3 32 30-61 56-96 (150)
29 2k6v_A Putative cytochrome C o 30.6 20 0.00067 23.8 1.4 27 37-63 139-167 (172)
30 2jsy_A Probable thiol peroxida 29.3 63 0.0022 21.4 3.9 20 37-56 129-149 (167)
31 2ggt_A SCO1 protein homolog, m 28.6 60 0.0021 21.1 3.6 26 38-63 129-155 (164)
32 3drn_A Peroxiredoxin, bacterio 26.7 70 0.0024 21.2 3.7 28 37-64 112-140 (161)
33 3lor_A Thiol-disulfide isomera 26.4 65 0.0022 20.8 3.4 23 38-60 123-146 (160)
34 1tp9_A Peroxiredoxin, PRX D (t 25.8 47 0.0016 22.4 2.7 19 36-54 128-146 (162)
35 2wsh_A Endonuclease II; GIY-YI 25.6 27 0.00093 25.2 1.4 21 36-57 40-60 (143)
36 1psq_A Probable thiol peroxida 24.6 67 0.0023 21.4 3.3 20 37-56 127-147 (163)
37 2yzh_A Probable thiol peroxida 22.9 1.1E+02 0.0036 20.5 4.1 20 36-55 133-153 (171)
38 3me7_A Putative uncharacterize 22.9 1E+02 0.0036 20.8 4.1 28 38-65 129-157 (170)
39 2xhf_A Peroxiredoxin 5; oxidor 22.6 67 0.0023 22.9 3.1 21 35-55 133-153 (171)
40 2rli_A SCO2 protein homolog, m 22.1 87 0.003 20.5 3.4 26 38-63 132-158 (171)
41 4g4f_A Tumor necrosis factor l 21.2 61 0.0021 22.9 2.5 20 34-53 84-103 (126)
42 2lja_A Putative thiol-disulfid 20.8 66 0.0022 20.6 2.5 25 38-62 111-136 (152)
43 2obi_A PHGPX, GPX-4, phospholi 20.4 84 0.0029 21.3 3.1 25 38-62 152-177 (183)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=99.89 E-value=2.5e-24 Score=191.20 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=103.7
Q ss_pred ceecceeecCcCCCCC-----CCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--
Q 033360 2 LIYPRMMAVHTLFSEE-----ADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP-- 74 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~~-----~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~-- 74 (121)
++||+||++|++.++. ++.+++|+.++||+++|+++|+||||||..+|||+|++|+|++++||||++++++++
T Consensus 599 ~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~ 678 (751)
T 3eh1_A 599 MIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQK 678 (751)
T ss_dssp HHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSS
T ss_pred hccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcc
Confidence 6899999999987652 234578999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcceeeee---------------eecCCCCeeEeeecceeccccccceec
Q 033360 75 QVVFVHGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDYESEYSYR 120 (121)
Q Consensus 75 ~~~Lp~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (121)
+..||++||++|++.+..+ ....|+....|...|+||+-+++.||.
T Consensus 679 ~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~ 739 (751)
T 3eh1_A 679 MTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYY 739 (751)
T ss_dssp BCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBTTBCCHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCCCCCCHH
Confidence 6899999999998766553 344455566688899999999999984
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=99.86 E-value=5.8e-23 Score=182.64 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=100.4
Q ss_pred ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--ccccC
Q 033360 2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--QVVFV 79 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~~~Lp 79 (121)
++||+||++|++..+. ..+|++++||+++|+++|+||||||..+|||+|++|+|++++++||++++++++ +..||
T Consensus 618 ~iyP~L~~~h~~~~~~---~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp 694 (766)
T 3eh2_A 618 FFYPRLLPLTKSPVES---TTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLP 694 (766)
T ss_dssp HHSCEEEECSSCCCSC---C--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCC
T ss_pred HHhheEEEeecCCccc---ccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCC
Confidence 6899999999986553 357999999999999999999999999999999999999999999999999999 78899
Q ss_pred CCCCCCCcceeeee---------------eecCCCCeeEeeecceeccccc-cceec
Q 033360 80 HGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDYES-EYSYR 120 (121)
Q Consensus 80 ~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 120 (121)
++||++|++.+..+ ....|+....|.+.|+||+-++ +.||.
T Consensus 695 ~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~~~~SY~ 751 (766)
T 3eh2_A 695 VLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYV 751 (766)
T ss_dssp CCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTTTCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCCCCCCHH
Confidence 99999998776653 3445667778889999999876 78884
No 3
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=99.86 E-value=8.8e-23 Score=181.56 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=100.6
Q ss_pred ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCCCCCC--ccccC
Q 033360 2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLTRFSP--QVVFV 79 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~~~i~--~~~Lp 79 (121)
++||+||++|++..+.. .+|++++||.++|+++|+||||||..+|||+|++|+|++++++||++++++++ +..||
T Consensus 622 ~iyP~L~~~h~l~~~~~---~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp 698 (770)
T 3efo_B 622 FFYPQLLPIHTLDVKST---MLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLP 698 (770)
T ss_dssp HHSCEEEECTTCCSSSC---SCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCC
T ss_pred hhccceEEEeccccccc---cCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCC
Confidence 68999999999876533 57999999999999999999999999999999999999999999999999999 78999
Q ss_pred CCCCCCCcceeeee---------------eecCCCCeeEeeecceeccc-cccceec
Q 033360 80 HGSGPITPMSVSYS---------------SFDLDGSCLVLTESLHFTDY-ESEYSYR 120 (121)
Q Consensus 80 ~~dn~ls~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 120 (121)
++||++|++.+..+ ....|+....|.+.|+||+. +.+.||.
T Consensus 699 ~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~~~~~SY~ 755 (770)
T 3efo_B 699 EVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYV 755 (770)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC---CCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCCCCCCCHH
Confidence 99999998776653 34446666778889999998 8888884
No 4
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=99.84 E-value=7e-22 Score=176.47 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=99.0
Q ss_pred ceecceeecCcCCCC-----------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCC
Q 033360 2 LIYPRMMAVHTLFSE-----------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLT 70 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~-----------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~ 70 (121)
++||+||++|++.++ +++.+.+|++++||.++|+++|+||||||..+|+|+|++++|++++++||++++
T Consensus 635 ~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~ 714 (810)
T 1pcx_A 635 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI 714 (810)
T ss_dssp HHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCG
T ss_pred hccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCch
Confidence 789999999998533 345688999999999999999999999999999999999999999999999999
Q ss_pred CCCC--ccccCCC-CCCCCcceeeeeeecCCCCe-------eE------------------------eeecceecccccc
Q 033360 71 RFSP--QVVFVHG-SGPITPMSVSYSSFDLDGSC-------LV------------------------LTESLHFTDYESE 116 (121)
Q Consensus 71 ~~i~--~~~Lp~~-dn~ls~~~~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~~~~ 116 (121)
.+++ +..||++ +|++|++.+..+...|..|. .+ |...|+||+.+++
T Consensus 715 ~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~ 794 (810)
T 1pcx_A 715 FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNN 794 (810)
T ss_dssp GGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTB
T ss_pred hhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCC
Confidence 9999 7889999 99999888777643332221 22 2357889998888
Q ss_pred ceec
Q 033360 117 YSYR 120 (121)
Q Consensus 117 ~~~~ 120 (121)
.||.
T Consensus 795 ~SY~ 798 (810)
T 1pcx_A 795 ESYR 798 (810)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8874
No 5
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=99.82 E-value=1.6e-21 Score=176.69 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=78.7
Q ss_pred ceecceeecCcCCCC-----------CCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhCCCCC
Q 033360 2 LIYPRMMAVHTLFSE-----------EADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFGISLT 70 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~-----------~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFGv~s~ 70 (121)
++||+||++|++.++ +++.+.+|++++||.++|+++|+||||||..+|+|+|++++|++++++||++++
T Consensus 751 ~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~ 830 (926)
T 1m2v_B 751 NIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI 830 (926)
T ss_dssp HHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC--------
T ss_pred hccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCch
Confidence 789999999998533 345688999999999999999999999999999999999999999999999999
Q ss_pred CCCC--ccccCCC-CCCCCcceeeeeeecCCCCe-------eEe------------------------eecceecccccc
Q 033360 71 RFSP--QVVFVHG-SGPITPMSVSYSSFDLDGSC-------LVL------------------------TESLHFTDYESE 116 (121)
Q Consensus 71 ~~i~--~~~Lp~~-dn~ls~~~~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~~~ 116 (121)
.+++ +..||++ ||++|++.+..+...|..|. .|. ...|+||+.+++
T Consensus 831 ~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~ 910 (926)
T 1m2v_B 831 FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILNN 910 (926)
T ss_dssp -----------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTTC
T ss_pred hhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCCC
Confidence 9999 7889999 99999988877654443331 222 256888888888
Q ss_pred ceec
Q 033360 117 YSYR 120 (121)
Q Consensus 117 ~~~~ 120 (121)
.||.
T Consensus 911 ~SY~ 914 (926)
T 1m2v_B 911 ESYR 914 (926)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8874
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.02 E-value=7.7e-11 Score=104.75 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=54.4
Q ss_pred ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhC-CCCCCCC
Q 033360 2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFG-ISLTRFS 73 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFG-v~s~~~i 73 (121)
++||+||++|.. ..|++++||.++|+++|+||||||..++||+|+.++ +|.++.|+ .+..+++
T Consensus 624 ~iyP~L~~~~~~--------~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~~~~~~~~~~~~~~~~ 687 (768)
T 1m2o_A 624 MIQPTLTSFSME--------DDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIA-QWRKAGYQDDPQYADF 687 (768)
T ss_dssp HHSCEEEEECSS--------SCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTGGGSTTCHHH
T ss_pred hhCCeEEEecCC--------CCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcch-HHHhcccCCCchhhhH
Confidence 689999999962 148899999999999999999999999999999996 79999997 4444433
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.93 E-value=3.8e-10 Score=100.37 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=48.3
Q ss_pred ceecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhh
Q 033360 2 LIYPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLF 65 (121)
Q Consensus 2 ~lYPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlF 65 (121)
++||+||++|.. ..|++++||.++|+++|+||||||..++||+|+.++ +|.+.-|
T Consensus 622 ~iyP~L~~~~~~--------~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~-~w~~~~~ 676 (769)
T 2nut_A 622 MIQPILYAYSFS--------GPPEPVLLDSSSILADRILLMDTFFQILIYHGETIA-QWRKSGY 676 (769)
T ss_dssp HHSCEEEEECSS--------SSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHH-HHHHHTT
T ss_pred hhcCEEEeccCC--------CCCCceeCCHHHccCCCEEEEECCCEEEEEECCcch-HHHhCCC
Confidence 689999999973 148889999999999999999999999999999994 6777533
No 8
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.96 E-value=9.4e-06 Score=55.47 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=39.1
Q ss_pred cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
||||.++-- + ...-..++++.++|.++.+|+||+|..+|+|+|+.+++.
T Consensus 3 ~rL~~v~g~-----~-~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~ 51 (104)
T 1kcq_A 3 QRLFQVKGR-----R-VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRY 51 (104)
T ss_dssp CEEEEEEES-----S-SEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHH
T ss_pred cEEEEEECC-----C-cEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHH
Confidence 788888641 1 122234689999999999999999999999999999964
No 9
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=97.87 E-value=1.4e-05 Score=66.40 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=43.3
Q ss_pred ecceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHh
Q 033360 4 YPRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQL 64 (121)
Q Consensus 4 YPrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dl 64 (121)
.||||.+.+ ..|.+......+++-+.|.++.+||||+|..+|+|+|+.+++.--+..
T Consensus 282 ~~rLf~~s~----~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~A 338 (398)
T 3fg7_A 282 TPRLFECSN----KTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAA 338 (398)
T ss_dssp CCEEEEEEC----TTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHHH
T ss_pred cCeeEEEEc----CCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHH
Confidence 688888754 234333333347999999999999999999999999999997643333
No 10
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=97.86 E-value=1.5e-05 Score=64.35 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=42.2
Q ss_pred eecceeecCcCCCCCCCCccCCCc-ccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHH
Q 033360 3 IYPRMMAVHTLFSEEADGSLTTPI-IPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQ 63 (121)
Q Consensus 3 lYPrLy~Lh~l~~~~~~~~~lPp~-l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~d 63 (121)
..||||.+.+ +.|.+..... -+++-+.|.++.+||||+|..+|+|+|+.+++.--+.
T Consensus 227 ~~~rLf~~s~----~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~ 284 (344)
T 2fh1_A 227 HPPRLFACSN----KIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTE 284 (344)
T ss_dssp CCCEEEEEEC----TTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHH
T ss_pred cCCEEEEEEc----CCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHH
Confidence 3588888754 2233322222 2789999999999999999999999999999864443
No 11
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=97.80 E-value=2.3e-05 Score=64.35 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=43.0
Q ss_pred cceeecCcCCCCCCCCccCCCc-ccCccccccCCcEEEEEcCCEEEEEecCCCCHHHHHHhhC
Q 033360 5 PRMMAVHTLFSEEADGSLTTPI-IPLTSEHITEDGIFLLENGEDALIYIGDRVNSYILDQLFG 66 (121)
Q Consensus 5 PrLy~Lh~l~~~~~~~~~lPp~-l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ll~dlFG 66 (121)
||||.+.+ +.|.+..... -+++-+.|.++.+||||+|..+|+|+|+.+++.--+..+.
T Consensus 270 ~rLf~~s~----~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~ 328 (371)
T 3fg6_A 270 PRLYGCSN----KTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK 328 (371)
T ss_dssp CEEEEEEC----TTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHH
T ss_pred cEEEEEEc----CCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHH
Confidence 67777643 2233222221 2689999999999999999999999999999876666553
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.77 E-value=1.7e-05 Score=55.25 Aligned_cols=49 Identities=18% Similarity=0.408 Sum_probs=38.4
Q ss_pred cceeecCcCCCCCCCCccCCCcccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 5 PRMMAVHTLFSEEADGSLTTPIIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 5 PrLy~Lh~l~~~~~~~~~lPp~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
||||.+.-- ....-..++++.++|.++.+|+||+|..+|+|+|+.++..
T Consensus 13 ~rL~~v~G~------~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~ 61 (114)
T 1svq_A 13 PRLLHISGD------KNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQ 61 (114)
T ss_dssp EEEEEEECT------TSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHH
T ss_pred cEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHH
Confidence 677777621 1112234689999999999999999999999999999964
No 13
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=97.74 E-value=2.3e-05 Score=63.12 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.7
Q ss_pred ecceeecCcCCCCCCCCccC---CCcccCccccccCCcEEEEEcC--CEEEEEecCCCCHHHH
Q 033360 4 YPRMMAVHTLFSEEADGSLT---TPIIPLTSEHITEDGIFLLENG--EDALIYIGDRVNSYIL 61 (121)
Q Consensus 4 YPrLy~Lh~l~~~~~~~~~l---Pp~l~LS~e~l~~~GiYLLdnG--~~l~LWvG~~v~p~ll 61 (121)
.||||.+.+ ..|.+.. +..-+++.+.|.++.+||||+| ..+|+|+|+.++++--
T Consensus 247 ~~rLy~vs~----~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er 305 (347)
T 1j72_A 247 AAALYKVSD----ATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKER 305 (347)
T ss_dssp CCEEEEEEC----TTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHH
T ss_pred CCEEEEEEC----CCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHH
Confidence 478888754 2233322 2223899999999999999999 9999999999998543
No 14
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=97.55 E-value=5.9e-05 Score=66.68 Aligned_cols=53 Identities=15% Similarity=0.362 Sum_probs=41.8
Q ss_pred eecceeecCcCCCCCCCCccCCCcc-cCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 3 IYPRMMAVHTLFSEEADGSLTTPII-PLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 3 lYPrLy~Lh~l~~~~~~~~~lPp~l-~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
..||||.+.+ +.|.+...... +.+-+.|.++.+||||+|..+|+|||+.++..
T Consensus 612 ~~~rLf~~s~----~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~ 665 (729)
T 1d0n_A 612 HPPRLFACSN----KIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDE 665 (729)
T ss_dssp SCCEEEEEEC----TTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHH
T ss_pred cCCeEEEEEc----CCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence 3688998864 23434333334 68999999999999999999999999999875
No 15
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=97.20 E-value=0.00016 Score=63.90 Aligned_cols=52 Identities=15% Similarity=0.394 Sum_probs=37.7
Q ss_pred cceeecCcCCCCCCCCccCCCc---ccCccccccCCcEEEEEcC-CE-EEEEecCCCCHHH
Q 033360 5 PRMMAVHTLFSEEADGSLTTPI---IPLTSEHITEDGIFLLENG-ED-ALIYIGDRVNSYI 60 (121)
Q Consensus 5 PrLy~Lh~l~~~~~~~~~lPp~---l~LS~e~l~~~GiYLLdnG-~~-l~LWvG~~v~p~l 60 (121)
||||.+.+ .+|.+.+... -+++.+.|+++.+||||+| .. ||+|+|+.++++-
T Consensus 245 ~rLy~vs~----~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~e 301 (729)
T 1d0n_A 245 AKLYKVSN----GAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEE 301 (729)
T ss_dssp CEEEEEEC----SSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHH
T ss_pred cEEEEEEC----CCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHH
Confidence 56777653 2233322222 2789999999999999999 43 9999999999743
No 16
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=96.69 E-value=0.0016 Score=52.27 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=31.2
Q ss_pred cccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
.++++..+|.++.+|+|++|..+|+|+|+.+++.
T Consensus 151 eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~ 184 (347)
T 1j72_A 151 ERALNWDSFNTGDCFILDLGQNIFAWCGGKSNIL 184 (347)
T ss_dssp EECSSGGGCBTTSEEEEEETTEEEEEECTTCCHH
T ss_pred EEeeeHHHcCCCceEEEecCCEEEEEECCCCCHH
Confidence 4678899999999999999999999999999964
No 17
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.53 E-value=0.0023 Score=51.56 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=30.6
Q ss_pred ccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 27 IPLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 27 l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
++++..+|.++.+|+|++|..+|+|+|+.+++.
T Consensus 143 V~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~ 175 (344)
T 2fh1_A 143 VLPKAGALNSNDAFVLKTPSAAYLWVGTGASEA 175 (344)
T ss_dssp ECCSGGGCBTTSEEEEECSSCEEEEECTTCCHH
T ss_pred ecCchhhcCCCceEEEecCCEEEEEECCCCCHH
Confidence 578999999999999999999999999999864
No 18
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=96.40 E-value=0.0034 Score=51.41 Aligned_cols=33 Identities=12% Similarity=0.425 Sum_probs=30.8
Q ss_pred ccCccccccCCcEEEEEcC-CEEEEEecCCCCHH
Q 033360 27 IPLTSEHITEDGIFLLENG-EDALIYIGDRVNSY 59 (121)
Q Consensus 27 l~LS~e~l~~~GiYLLdnG-~~l~LWvG~~v~p~ 59 (121)
++++.++|.++.+|||++| ..+|+|.|+.++..
T Consensus 184 V~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~ 217 (371)
T 3fg6_A 184 VDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQE 217 (371)
T ss_dssp ECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHH
T ss_pred ecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHH
Confidence 6789999999999999999 99999999999864
No 19
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.45 E-value=0.0025 Score=52.88 Aligned_cols=34 Identities=12% Similarity=0.382 Sum_probs=0.0
Q ss_pred cccCccccccCCcEEEEEcCCEEEEEecCCCCHH
Q 033360 26 IIPLTSEHITEDGIFLLENGEDALIYIGDRVNSY 59 (121)
Q Consensus 26 ~l~LS~e~l~~~GiYLLdnG~~l~LWvG~~v~p~ 59 (121)
.++++..+|.++.+|||++|..+|+|.|+.+++.
T Consensus 196 EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~ 229 (398)
T 3fg7_A 196 EVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGD 229 (398)
T ss_dssp ----------------------------------
T ss_pred EecCCHHHccCCceEEEEeCCeEEEEeCCCCCHH
Confidence 4678999999999999999999999999998764
No 20
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=74.64 E-value=1.4 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCEEEEEecCCCCH-HHHHHhhC
Q 033360 36 EDGIFLLENGEDALIYIGDRVNS-YILDQLFG 66 (121)
Q Consensus 36 ~~GiYLLdnG~~l~LWvG~~v~p-~ll~dlFG 66 (121)
.-|||++-|...-.||||++.+= .=+.+-|.
T Consensus 15 ~pGVY~~~d~~g~vlYVGKAknLr~Rv~syf~ 46 (99)
T 1yd6_A 15 QPGCYLMKDKHGTVIYVGKAKSLKERVRSYFT 46 (99)
T ss_dssp SCEEEEEECSSCCEEEEEEESCHHHHHHGGGS
T ss_pred CCeEEEEEcCCCCEEEEecCcCHHHHHHHHcc
Confidence 46999999976678999998652 23344443
No 21
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=70.46 E-value=1.7 Score=29.19 Aligned_cols=21 Identities=33% Similarity=0.754 Sum_probs=18.0
Q ss_pred CCcEEEEEcCCEEEEEecCCCC
Q 033360 36 EDGIFLLENGEDALIYIGDRVN 57 (121)
Q Consensus 36 ~~GiYLLdnG~~l~LWvG~~v~ 57 (121)
.-|+|++-| ..-.||||++.+
T Consensus 15 ~pGVY~~~d-~g~vlYVGKAkn 35 (96)
T 1yd0_A 15 EPGVYIFKN-KGVPIYIGKAKR 35 (96)
T ss_dssp SCEEEEEEE-TTEEEEEEEESS
T ss_pred CCeEEEEEC-CCeEEEEecCcC
Confidence 469999999 777999999875
No 22
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=55.86 E-value=8.5 Score=26.83 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=24.5
Q ss_pred ccccccCCcEEEEEc--------CCEEEEEecCCCCHHHH
Q 033360 30 TSEHITEDGIFLLEN--------GEDALIYIGDRVNSYIL 61 (121)
Q Consensus 30 S~e~l~~~GiYLLdn--------G~~l~LWvG~~v~p~ll 61 (121)
..-.+..+.+|++-. ...+|.|+|++++.+=.
T Consensus 35 ~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~ 74 (126)
T 2vik_A 35 SYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQ 74 (126)
T ss_dssp TTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHH
T ss_pred hcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhH
Confidence 456788888888754 36799999999997643
No 23
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=47.76 E-value=19 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=24.3
Q ss_pred ccccccCCcEEEEE------cC---CEEEEEecCCCCHH
Q 033360 30 TSEHITEDGIFLLE------NG---EDALIYIGDRVNSY 59 (121)
Q Consensus 30 S~e~l~~~GiYLLd------nG---~~l~LWvG~~v~p~ 59 (121)
..-++..+-+|++- +| ..+|.|+|++++++
T Consensus 52 ~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~d 90 (297)
T 3tu5_B 52 LYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQD 90 (297)
T ss_dssp GTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHH
T ss_pred HcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChh
Confidence 56778888999885 44 47999999999975
No 24
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=42.70 E-value=21 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCEEEEEecCC
Q 033360 36 EDGIFLLENGEDALIYIGDR 55 (121)
Q Consensus 36 ~~GiYLLdnG~~l~LWvG~~ 55 (121)
....|+|++|...+.|+|.+
T Consensus 149 ~r~tfiIddG~I~~~~~~~~ 168 (184)
T 3uma_A 149 KRYSMLVEDGVVKALNIEES 168 (184)
T ss_dssp CCEEEEEETTEEEEEEECSS
T ss_pred eeEEEEECCCEEEEEEEeCC
Confidence 34699999999999999975
No 25
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=38.42 E-value=25 Score=24.77 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=18.0
Q ss_pred cCCcEEEEEcCCEEEEEecCC
Q 033360 35 TEDGIFLLENGEDALIYIGDR 55 (121)
Q Consensus 35 ~~~GiYLLdnG~~l~LWvG~~ 55 (121)
...+.|+||+|...+.|++..
T Consensus 137 ~~r~tfvIDdG~I~~~~v~~~ 157 (173)
T 3mng_A 137 LKRFSMVVQDGIVKALNVEPD 157 (173)
T ss_dssp BCCEEEEEETTEEEEEEECTT
T ss_pred eEEEEEEEECCEEEEEEEeCC
Confidence 446899999999999999864
No 26
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=36.34 E-value=21 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=23.9
Q ss_pred ccccccCCcEEEEEc------C---CEEEEEecCCCCHHHH
Q 033360 30 TSEHITEDGIFLLEN------G---EDALIYIGDRVNSYIL 61 (121)
Q Consensus 30 S~e~l~~~GiYLLdn------G---~~l~LWvG~~v~p~ll 61 (121)
..-.+..+.+|++-. | ..+|.|+|++++++=.
T Consensus 37 ~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~ 77 (128)
T 3cip_G 37 LYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDES 77 (128)
T ss_dssp GTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHH
T ss_pred HcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchH
Confidence 345777888888643 3 4799999999998654
No 27
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=33.54 E-value=24 Score=25.15 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=23.9
Q ss_pred ccccccCCcEEEEEc------C---CEEEEEecCCCCHHHH
Q 033360 30 TSEHITEDGIFLLEN------G---EDALIYIGDRVNSYIL 61 (121)
Q Consensus 30 S~e~l~~~GiYLLdn------G---~~l~LWvG~~v~p~ll 61 (121)
..-.+..+.+|++-. | ..+|+|+|++++++=.
T Consensus 34 ~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~ 74 (147)
T 1t44_G 34 LYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDES 74 (147)
T ss_dssp GTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHH
T ss_pred HcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHH
Confidence 345778888888643 3 4799999999998743
No 28
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=32.19 E-value=26 Score=25.23 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=24.0
Q ss_pred ccccccCCcEEEEEc------C---CEEEEEecCCCCHHHH
Q 033360 30 TSEHITEDGIFLLEN------G---EDALIYIGDRVNSYIL 61 (121)
Q Consensus 30 S~e~l~~~GiYLLdn------G---~~l~LWvG~~v~p~ll 61 (121)
..-.+.++.+|++-. | ..+|+|+|++++++=.
T Consensus 56 ~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~ 96 (150)
T 2ff3_A 56 LYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDES 96 (150)
T ss_dssp GTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHH
T ss_pred HcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhH
Confidence 355788888888532 3 4799999999998744
No 29
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=30.62 E-value=20 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=20.0
Q ss_pred CcEEEEEcCCEEEEEecCC--CCHHHHHH
Q 033360 37 DGIFLLENGEDALIYIGDR--VNSYILDQ 63 (121)
Q Consensus 37 ~GiYLLdnG~~l~LWvG~~--v~p~ll~d 63 (121)
...||+|+|..+..|.|.. -..++.+.
T Consensus 139 P~~~lid~G~i~~~~~g~~~~~~~~l~~~ 167 (172)
T 2k6v_A 139 ATTFVVKEGRLVLLYSPDKAEATDRVVAD 167 (172)
T ss_dssp CCEEEEETTEEEEEECHHHHTCHHHHHHH
T ss_pred CEEEEEECCEEEEEECCCCCCCHHHHHHH
Confidence 4689999999999999875 44444443
No 30
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=29.28 E-value=63 Score=21.36 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.5
Q ss_pred CcEEEEE-cCCEEEEEecCCC
Q 033360 37 DGIFLLE-NGEDALIYIGDRV 56 (121)
Q Consensus 37 ~GiYLLd-nG~~l~LWvG~~v 56 (121)
...||+| +|..++.|+|...
T Consensus 129 p~~~lid~~G~i~~~~~g~~~ 149 (167)
T 2jsy_A 129 RSVFVLDENGKVVYAEYVSEA 149 (167)
T ss_dssp CEEEEECTTSCEEEEEECSBT
T ss_pred eEEEEEcCCCcEEEEEecCCc
Confidence 3589998 7999999998654
No 31
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=28.55 E-value=60 Score=21.06 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.2
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHHHHH
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYILDQ 63 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~ll~d 63 (121)
..||+| +|..+..|.|..-..++.+.
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~ 155 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAAS 155 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHH
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHH
Confidence 589997 79999999887655555444
No 32
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=26.68 E-value=70 Score=21.17 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=20.3
Q ss_pred CcEEEEE-cCCEEEEEecCCCCHHHHHHh
Q 033360 37 DGIFLLE-NGEDALIYIGDRVNSYILDQL 64 (121)
Q Consensus 37 ~GiYLLd-nG~~l~LWvG~~v~p~ll~dl 64 (121)
-..||+| +|...+.|.|..-+...++++
T Consensus 112 P~~~lid~~G~i~~~~~g~~~~~~~~~~i 140 (161)
T 3drn_A 112 RITFVIDKKGIIRHIYNSQMNPANHVNEA 140 (161)
T ss_dssp CEEEEECTTSBEEEEEECSSCTTHHHHHH
T ss_pred ceEEEECCCCEEEEEEecCCCCCcCHHHH
Confidence 3589998 899999999954444444444
No 33
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=26.35 E-value=65 Score=20.81 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.6
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHH
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYI 60 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~l 60 (121)
..||+| +|..++.+.|..-..++
T Consensus 123 ~~~lid~~G~i~~~~~g~~~~~~l 146 (160)
T 3lor_A 123 SIILADRKGRIRQVQFGQVDDFVL 146 (160)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHH
T ss_pred eEEEECCCCcEEEEecCcCCHHHH
Confidence 369998 89999999997554433
No 34
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=25.84 E-value=47 Score=22.37 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCEEEEEecC
Q 033360 36 EDGIFLLENGEDALIYIGD 54 (121)
Q Consensus 36 ~~GiYLLdnG~~l~LWvG~ 54 (121)
....|++|+|...+.|+|.
T Consensus 128 ~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 128 RRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp CCEEEEEETTEEEEEEECS
T ss_pred eeEEEEEECCEEEEEEeeC
Confidence 3468999999999999987
No 35
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=25.58 E-value=27 Score=25.21 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCEEEEEecCCCC
Q 033360 36 EDGIFLLENGEDALIYIGDRVN 57 (121)
Q Consensus 36 ~~GiYLLdnG~~l~LWvG~~v~ 57 (121)
..|+|++-+ ..-.||||++-+
T Consensus 40 ~~GVY~~~~-~g~ViYVGKAkn 60 (143)
T 2wsh_A 40 YNVIYAIAI-NDELVYIGKTKN 60 (143)
T ss_dssp CSEEEEEEE-TTEEEEEEEESC
T ss_pred CceEEEEEc-CCeEEEEEeccc
Confidence 678999976 444799999865
No 36
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=24.63 E-value=67 Score=21.41 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=16.9
Q ss_pred CcEEEEE-cCCEEEEEecCCC
Q 033360 37 DGIFLLE-NGEDALIYIGDRV 56 (121)
Q Consensus 37 ~GiYLLd-nG~~l~LWvG~~v 56 (121)
...||+| +|...+.|+|...
T Consensus 127 p~~~liD~~G~i~~~~~g~~~ 147 (163)
T 1psq_A 127 RAVFVLDTDNTIRYVEYVDNI 147 (163)
T ss_dssp CEEEEECTTCBEEEEEECSBT
T ss_pred EEEEEEcCCCeEEEEEecCCc
Confidence 5789998 7999999998644
No 37
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=22.87 E-value=1.1e+02 Score=20.49 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=16.7
Q ss_pred CCcEEEEE-cCCEEEEEecCC
Q 033360 36 EDGIFLLE-NGEDALIYIGDR 55 (121)
Q Consensus 36 ~~GiYLLd-nG~~l~LWvG~~ 55 (121)
....||+| +|...+.|+|..
T Consensus 133 ~p~~~liD~~G~i~~~~~~~~ 153 (171)
T 2yzh_A 133 ARAVFIIDKEGKVAYVQLVPE 153 (171)
T ss_dssp CCEEEEECTTSBEEEEEECSB
T ss_pred eeEEEEEcCCCeEEEEEeCCC
Confidence 35799999 899999999754
No 38
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=22.86 E-value=1e+02 Score=20.78 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=21.7
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHHHHHhh
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYILDQLF 65 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~ll~dlF 65 (121)
..|||| +|.....|.|...+++=+.+.+
T Consensus 129 ~~~lID~~G~i~~~~~g~~~~~~~i~~~l 157 (170)
T 3me7_A 129 VVVVLSPELQIKDYIYGVNYNYLEFVNAL 157 (170)
T ss_dssp EEEEECTTSBEEEEEESSSCCHHHHHHHH
T ss_pred eEEEECCCCeEEEEEeCCCCCHHHHHHHH
Confidence 489998 7999999999887776554443
No 39
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=22.55 E-value=67 Score=22.91 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=18.0
Q ss_pred cCCcEEEEEcCCEEEEEecCC
Q 033360 35 TEDGIFLLENGEDALIYIGDR 55 (121)
Q Consensus 35 ~~~GiYLLdnG~~l~LWvG~~ 55 (121)
....+|+||+|...++|+...
T Consensus 133 ~~R~tfvIddG~V~~~~v~~~ 153 (171)
T 2xhf_A 133 SRRYAMLIDDNKIRSVSTEPD 153 (171)
T ss_dssp BCCEEEEEETTEEEEEEETTS
T ss_pred eEEEEEEEeCCEEEEEEEeCC
Confidence 456799999999999999764
No 40
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=22.08 E-value=87 Score=20.47 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=19.1
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHHHHH
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYILDQ 63 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~ll~d 63 (121)
..||+| +|..+..|.|..-..++.+.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~ 158 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDS 158 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHH
Confidence 579997 69999999987655455443
No 41
>4g4f_A Tumor necrosis factor ligand superfamily member 1; glucocorticoid-induced TNF receptor ligand, immune system, T structural genomics; 1.85A {Otolemur garnettii}
Probab=21.19 E-value=61 Score=22.89 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=18.3
Q ss_pred ccCCcEEEEEcCCEEEEEec
Q 033360 34 ITEDGIFLLENGEDALIYIG 53 (121)
Q Consensus 34 l~~~GiYLLdnG~~l~LWvG 53 (121)
-..+|+|-|+-|+.++++|.
T Consensus 84 ~~~GGVF~L~~GD~Ifv~vn 103 (126)
T 4g4f_A 84 YDVGGTYEFHAGDIIDLIFD 103 (126)
T ss_dssp SCCCEEEEECTTCEEEEEES
T ss_pred eecccEEEeCCCCEEEEEEc
Confidence 45899999999999999995
No 42
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=20.76 E-value=66 Score=20.59 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.7
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHHHH
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYILD 62 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~ll~ 62 (121)
.+|++| +|..++.+.|..-.+++.+
T Consensus 111 ~~~lid~~G~i~~~~~g~~~~~~l~~ 136 (152)
T 2lja_A 111 RFILLDRDGKIISANMTRPSDPKTAE 136 (152)
T ss_dssp CEEEECTTSCEEESSCCCTTCHHHHH
T ss_pred EEEEECCCCeEEEccCCCCCHHHHHH
Confidence 479998 9999998888665555443
No 43
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=20.36 E-value=84 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=18.8
Q ss_pred cEEEEE-cCCEEEEEecCCCCHHHHH
Q 033360 38 GIFLLE-NGEDALIYIGDRVNSYILD 62 (121)
Q Consensus 38 GiYLLd-nG~~l~LWvG~~v~p~ll~ 62 (121)
..||+| +|..++.|.|..-..++.+
T Consensus 152 ~~~lid~~G~i~~~~~g~~~~~~l~~ 177 (183)
T 2obi_A 152 TKFLIDKNGCVVKRYGPMEEPLVIEK 177 (183)
T ss_dssp CEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHH
Confidence 579997 7999999999755555443
Done!