Citrus Sinensis ID: 033361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHcccccccccEEHHHHHHHHcccEEEEEEccccEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mykspeyhkHVRKEVVKQLKDCRSmyegyvpmkYKRYYKNMakvgewgdhVTLQAAADKFAAKICLLTSfrdtcfieimpqhqapkRELWLSFWSEVHYnslydirdapvpkkprkkhwlf
Flexible Loop (DISEMBL)
mykspeyhkhvrkEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSlydirdapvpkkprkkhwlf
Low Complexity Region (SEG)
MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Disordered region (IsUnstruct)
************KEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRD**************
Disordered Region (DISOPRED)
MYK**EYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEI****QAPKRELWLSFWSEVHYNSLY**************HWLF
Disordered Region (DISEMBL)
MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV***********
Disordered Region (DISPRO)
MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.876	0.138	0.327	2e-09

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 10/116 (8%)

Query: 1   MYKSPEYHKHVRKEVVK--------QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVT 52
           +Y    + + VRK +V         QL +  ++ +      +  Y  +M+K G WGDH+T
Sbjct: 651 LYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLT 710

Query: 53  LQAAADKFAAKICLLTSF--RDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 106
           L AAA+ F +KI +++S   +   FIEI+P      + L LS ++E HY SL  +R
Sbjct: 711 LLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGSLCPLR 766

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
225451683	226	PREDICTED: OTU domain-containing protein	1.0	0.535	0.884	3e-60
296082232	262	unnamed protein product [Vitis vinifera]	1.0	0.461	0.884	5e-60
449455768	226	PREDICTED: OTU domain-containing protein	1.0	0.535	0.867	2e-58
224128706	219	predicted protein [Populus trichocarpa]	1.0	0.552	0.876	5e-58
297832724	219	predicted protein [Arabidopsis lyrata su	1.0	0.552	0.834	8e-57
388497542	228	unknown [Lotus japonicus]	1.0	0.530	0.826	1e-56
15232843	219	cysteine proteinase-like protein [Arabid	1.0	0.552	0.826	1e-55
326525421	227	predicted protein [Hordeum vulgare subsp	1.0	0.533	0.818	1e-54
357113786	227	PREDICTED: OTU domain-containing protein	1.0	0.533	0.809	2e-54
222628798	228	hypothetical protein OsJ_14667 [Oryza sa	1.0	0.530	0.809	5e-54

>gi|225451683|ref|XP_002278321.1| PREDICTED: OTU domain-containing protein DDB_G0284757 [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 117/121 (96%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           MYKSPEYHKHVRKE+VKQLKD RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+F
Sbjct: 106 MYKSPEYHKHVRKEIVKQLKDYRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRF 165

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEI+PQ+QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWL
Sbjct: 166 AAKICLLTSFRDTCFIEIIPQYQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWL 225

Query: 121 F 121
           F
Sbjct: 226 F 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082232|emb|CBI21237.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 117/121 (96%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           MYKSPEYHKHVRKE+VKQLKD RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+F
Sbjct: 142 MYKSPEYHKHVRKEIVKQLKDYRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRF 201

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEI+PQ+QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWL
Sbjct: 202 AAKICLLTSFRDTCFIEIIPQYQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWL 261

Query: 121 F 121
           F
Sbjct: 262 F 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455768|ref|XP_004145623.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Cucumis sativus]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 113/121 (93%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           MY+SPEYHKHVRK+VVKQLKD RS+YEGYVPMKY RYYK MAK GEWGDHVTLQAAADKF
Sbjct: 106 MYRSPEYHKHVRKDVVKQLKDHRSLYEGYVPMKYSRYYKKMAKSGEWGDHVTLQAAADKF 165

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEI+PQ Q PKRELWLSFWSEVHYNSLY+I+D PV +KPR+KHWL
Sbjct: 166 AAKICLLTSFRDTCFIEIVPQSQTPKRELWLSFWSEVHYNSLYEIKDVPVQEKPRRKHWL 225

Query: 121 F 121
           F
Sbjct: 226 F 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128706|ref|XP_002320400.1| predicted protein [Populus trichocarpa] gi|222861173|gb|EEE98715.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 116/121 (95%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           M+KSPE+HKHVRK+VVKQLK+ RS+YEG+VPMKYKRY K MAK GEWGDHVTLQAAADKF
Sbjct: 99  MFKSPEHHKHVRKDVVKQLKEHRSLYEGHVPMKYKRYCKKMAKSGEWGDHVTLQAAADKF 158

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEIMPQ+Q PKRELWLSFWSEVHYNSLY+IRDAPVP+KP+KKHWL
Sbjct: 159 AAKICLLTSFRDTCFIEIMPQYQPPKRELWLSFWSEVHYNSLYEIRDAPVPQKPKKKHWL 218

Query: 121 F 121
           F
Sbjct: 219 F 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832724|ref|XP_002884244.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330084|gb|EFH60503.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SPEYHK VR+EVVKQLKDCRSMYE YVPMKYKRYYK M K+GEWGDH+TLQAAAD+F
Sbjct: 99  LYRSPEYHKQVRREVVKQLKDCRSMYESYVPMKYKRYYKRMGKLGEWGDHITLQAAADRF 158

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEI+PQ+QAPKRELWLSFWSEVHYNSLYDI+  PV  K ++KHWL
Sbjct: 159 AAKICLLTSFRDTCFIEIIPQYQAPKRELWLSFWSEVHYNSLYDIQAVPVQHKAKRKHWL 218

Query: 121 F 121
           F
Sbjct: 219 F 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497542|gb|AFK36837.1| unknown [Lotus japonicus]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 115/121 (95%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SPE+HKHVRKE+V+QLKD RS+YE YVPMKYKRYYK MAK+GEWGDHVTLQAA+DKF
Sbjct: 108 LYRSPEHHKHVRKEIVRQLKDHRSLYECYVPMKYKRYYKKMAKLGEWGDHVTLQAASDKF 167

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEIMP +QAP+RE+WLSFWSEVHYNSLY++RDAP+  KP+KKHWL
Sbjct: 168 AAKICLLTSFRDTCFIEIMPLYQAPQREIWLSFWSEVHYNSLYEVRDAPIQHKPKKKHWL 227

Query: 121 F 121
           F
Sbjct: 228 F 228

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232843|ref|NP_186856.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|6513925|gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gi|45773792|gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gi|46402444|gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] gi|222424391|dbj|BAH20151.1| AT3G02070 [Arabidopsis thaliana] gi|332640238|gb|AEE73759.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078859|gb|AFS88961.1| OTU-containing deubiquitinating enzyme OTU12 [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 111/121 (91%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SPEYHK VR+EVVKQLK+CRSMYE YVPMKYKRYYK M K GEWGDH+TLQAAAD+F
Sbjct: 99  LYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRF 158

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCFIEI+PQ+QAPK  LWLSFWSEVHYNSLYDI+ APV  KP++KHWL
Sbjct: 159 AAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSEVHYNSLYDIQAAPVQHKPKRKHWL 218

Query: 121 F 121
           F
Sbjct: 219 F 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326525421|dbj|BAK07975.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 109/121 (90%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SPEYHKHVRKE+VKQLK C S+YEG+VPMKYK Y K M K GEWGDHVTLQAAADKF
Sbjct: 107 LYRSPEYHKHVRKEIVKQLKACNSLYEGHVPMKYKHYCKKMKKSGEWGDHVTLQAAADKF 166

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCF+EI+PQ+QAP+RELWLSFWSE+HYNSLYD RD P   KPRKKHWL
Sbjct: 167 AAKICLLTSFRDTCFVEIVPQYQAPQRELWLSFWSEIHYNSLYDARDLPSKYKPRKKHWL 226

Query: 121 F 121
           F
Sbjct: 227 F 227

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357113786|ref|XP_003558682.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Brachypodium distachyon]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 109/121 (90%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SPEYHKHVRKE+VKQLK C S+YEG+VPM+YK Y K M K GEWGDHVTLQAAADKF
Sbjct: 107 LYRSPEYHKHVRKEIVKQLKACNSLYEGHVPMRYKHYCKKMKKSGEWGDHVTLQAAADKF 166

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCF+EI+PQ+QAP+RELWLSFWSE+HYNSLYD RD P   KPRKKHWL
Sbjct: 167 AAKICLLTSFRDTCFVEIVPQYQAPQRELWLSFWSEIHYNSLYDARDIPSKYKPRKKHWL 226

Query: 121 F 121
           F
Sbjct: 227 F 227

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628798|gb|EEE60930.1| hypothetical protein OsJ_14667 [Oryza sativa Japonica Group]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 108/121 (89%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y+SP+YHKHVRKE+VKQLK C S+YEGYVPMKYK Y K M K GEWGDHVTLQAAADKF
Sbjct: 107 LYRSPDYHKHVRKEIVKQLKACNSLYEGYVPMKYKHYCKKMKKSGEWGDHVTLQAAADKF 166

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
           AAKICLLTSFRDTCF+EI+PQ+QAP+RE+WLSFWSEVHYNSLYD RD P   KPRKKHWL
Sbjct: 167 AAKICLLTSFRDTCFVEIVPQYQAPQREIWLSFWSEVHYNSLYDARDLPSKYKPRKKHWL 226

Query: 121 F 121
            
Sbjct: 227 L 227

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	1.0	0.552	0.826	2.3e-55
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	1.0	0.493	0.656	8.4e-42
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	1.0	0.350	0.557	2.4e-35
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.983	0.334	0.537	1.5e-33
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.578	0.091	0.430	3.5e-10
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.677	0.433	0.321	5.9e-09
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.818	0.105	0.298	2.2e-07
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.818	0.105	0.298	2.2e-07
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.801	0.319	0.242	7.3e-05
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.884	0.244	0.241	0.00017

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 100/121 (82%), Positives = 111/121 (91%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
             +Y+SPEYHK VR+EVVKQLK+CRSMYE YVPMKYKRYYK M K GEWGDH+TLQAAAD+F
Sbjct:    99 LYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRF 158

Query:    61 AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 120
             AAKICLLTSFRDTCFIEI+PQ+QAPK  LWLSFWSEVHYNSLYDI+ APV  KP++KHWL
Sbjct:   159 AAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSEVHYNSLYDIQAAPVQHKPKRKHWL 218

Query:   121 F 121
             F
Sbjct:   219 F 219

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 82/125 (65%), Positives = 99/125 (79%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
             ++++ +YHKHVRK VVKQLK  R +YE YVPMKY+ Y + M K GEWGDHVTLQAAAD+F
Sbjct:   121 LFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAADRF 180

Query:    61 AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY--DIRDAP-VP-KKPRK 116
              AKICL+TSFRD  +IEI+P ++ P RE WLSFWSEVHYNSLY   +   P VP +KPR+
Sbjct:   181 EAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWSEVHYNSLYANGVLALPDVPTRKPRR 240

Query:   117 KHWLF 121
             KHWLF
Sbjct:   241 KHWLF 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/122 (55%), Positives = 91/122 (74%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
             +Y+SPE+H  VR++VV QL   R +YEGYVPM Y  Y K M + GEWGDHVTLQAAAD F
Sbjct:   224 LYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLF 283

Query:    61 AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPK-KPRKKHW 119
               ++ ++TSF+DTC+IEI+P  Q   R + LSFW+EVHYNS+Y   + P+P+ K +KK+W
Sbjct:   284 GVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEGKKKKKYW 343

Query:   120 LF 121
             +F
Sbjct:   344 VF 345

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 64/119 (53%), Positives = 87/119 (73%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
             +YK+ + HKHVR+++VKQLK     Y+GYVPM +  Y + M++ GEWGDHVTLQAAAD +
Sbjct:   233 LYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAADAY 292

Query:    61 AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHW 119
               KI +LTSF+DTC+IEI+P  Q  K  ++LSFW+EVHYN++Y  RD    +  RK+ W
Sbjct:   293 RVKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIYLNRDTSETELQRKRKW 351

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query:    37 YYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF--RDTCFIEIMPQHQAPKRELWLSFW 94
             Y  +M+K G WGDH+TL AAA+ F +KI +++S   +   FIEI+P      + L LS +
Sbjct:   695 YCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHY 754

Query:    95 SEVHYNSLYDIR 106
             +E HY SL  +R
Sbjct:   755 AEFHYGSLCPLR 766

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    18 QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE 77
             Q  DC  +    V  +  +   +++   +WGD VTL+ AAD +  KI L+TS +   F+E
Sbjct:    19 QNSDCHEL----VRQEIVKQNMSLSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFME 74

Query:    78 IMPQHQA-PKRELWLSFWSEVHYNSLY 103
              +P+ Q  P + + +S+ + +H+NS+Y
Sbjct:    75 FLPKSQKEPDKVIHMSYLAGIHFNSIY 101

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/104 (29%), Positives = 53/104 (50%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYKNMAKVGEWGDHVTLQAAAD 58
             +Y   E +K +RK+VV+ L     +Y+ ++     YK Y + ++  G WG  + LQA  +
Sbjct:    70 LYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISLDGTWGGQLELQAVGE 129

Query:    59 KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSL 102
              +  K+ +L    + C +EI   H    + L L + S  HYNS+
Sbjct:   130 IY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/104 (29%), Positives = 53/104 (50%)

Query:     1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYKNMAKVGEWGDHVTLQAAAD 58
             +Y   E +K +RK+VV+ L     +Y+ ++     YK Y + ++  G WG  + LQA  +
Sbjct:    70 LYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISLDGTWGGQLELQAVGE 129

Query:    59 KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSL 102
              +  K+ +L    + C +EI   H    + L L + S  HYNS+
Sbjct:   130 IY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 101 (40.6 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 25/103 (24%), Positives = 44/103 (42%)

Query:     5 PEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKI 64
             P Y + VR+     + D    +  ++      Y + M    EWG H+ L A A  +  ++
Sbjct:   199 PAY-RIVRRAASSYISDHADDFAPFLEEPLDDYVRKMRDTAEWGGHMELLALASTYNVEV 257

Query:    65 CLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE-----VHYNSL 102
              ++   R        P+   P R++WL+++        HYNSL
Sbjct:   258 RVIADGRTAVVQPKEPKEDEPARQVWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 100 (40.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 28/116 (24%), Positives = 56/116 (48%)

Query:     4 SPEYHKHVRKEVVKQLKDCRSMYEGYVPMK----YKRYYKNMAKVGEWGDHVTLQAAADK 59
             +P  H+  R+ + K ++  + M+  ++  +    ++ Y + M +   WG HV +QAA+  
Sbjct:    87 APNEHRKYREAICKYIEKNKDMFAPFIDDEEFESFEEYIQEMREDATWGGHVEIQAAS-- 144

Query:    60 FAAKICLLTSFRDTCFIEIMPQHQAPKRE--LWLSFWSEVHYNSLYDIRDAPVPKK 113
              A  + +     D    EI+  H  P++   + LS+ ++ HYNS+     +  P K
Sbjct:   145 LAYNVNITIHQMDQPRWEIV-NHFPPEKNKTIHLSYHNDEHYNSVRPANQSLYPTK 199

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	4e-19

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 76.0 bits (187), Expect = 4e-19
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 4   SPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAK 63
             E H  +R+ VV+ L++ R  +E ++      YYK ++K G WG ++ + A A      
Sbjct: 20  RQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDGAWGGNIEIFALAHILRVP 79

Query: 64  ICLL--TSFRDTCFIEIMP--QHQAPKRELWLSFWS----EVHY 99
           I +      R T +I+I         K  + LS+        HY
Sbjct: 80  IIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.86
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.84
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.6
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.54
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.44
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.31
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.81
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	96.87
TIGR02934	67	nifT_nitrog probable nitrogen fixation protein Fix	82.37

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.3e-22  Score=152.76  Aligned_cols=97  Identities=15%  Similarity=0.343  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeE
Q 033361            7 YHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFI   76 (121)
Q Consensus         7 ~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~   76 (121)
                      .-..||..+++||++|.++|.+|+.          .+|++||+.|++++.|||+|||.|+|.+|++||.|++.+.+.  +
T Consensus       188 ~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~  265 (302)
T KOG2606|consen  188 SVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--L  265 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--e
Confidence            3568999999999999999999992          369999999999999999999999999999999999987653  6


Q ss_pred             EecCCCCCCCCeEEEEecCC-----CcccceecCC
Q 033361           77 EIMPQHQAPKRELWLSFWSE-----VHYNSLYDIR  106 (121)
Q Consensus        77 ~~~~~~~~~~~~i~L~y~~~-----~HYdsv~~~~  106 (121)
                      .+++...+ .++|.|+|++.     +||||+.+.+
T Consensus       266 ~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~~  299 (302)
T KOG2606|consen  266 EYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPLK  299 (302)
T ss_pred             eechhhCC-CCCeeeehHHhHHHHHhhhccccccc
Confidence            77765533 68899999875     8999997653

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.84  E-value=3.5e-21  Score=129.76  Aligned_cols=91  Identities=27%  Similarity=0.472  Sum_probs=77.2

Q ss_pred             CChhhHHHHHHHHHHHHH-hCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCc--eeEEec
Q 033361            3 KSPEYHKHVRKEVVKQLK-DCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT--CFIEIM   79 (121)
Q Consensus         3 g~q~~h~~lR~~vv~ym~-~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~--~~~~~~   79 (121)
                      |++..|.+||++|++||+ .|++.|++|+..+      +|+++|+|||++||+|||++|+++|.|++.....  .++.+.
T Consensus        21 ~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~   94 (121)
T PF02338_consen   21 GSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFT   94 (121)
T ss_dssp             SSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeec
Confidence            899999999999999999 9999999999766      9999999999999999999999999998875442  233433


Q ss_pred             C--CCCCCCCeEEEEecC-----CCcc
Q 033361           80 P--QHQAPKRELWLSFWS-----EVHY   99 (121)
Q Consensus        80 ~--~~~~~~~~i~L~y~~-----~~HY   99 (121)
                      +  ......++|.|+|+.     ++||
T Consensus        95 ~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   95 GKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             CEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CccccCCCCCeEEEEEcCCccCCCCCC
Confidence            2  123457889999998     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.8e-16  Score=121.63  Aligned_cols=121  Identities=37%  Similarity=0.571  Sum_probs=96.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHH--HhCCcEEEEecCCCceeEEe
Q 033361            1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAAD--KFAAKICLLTSFRDTCFIEI   78 (121)
Q Consensus         1 lyg~q~~h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~--~~~~~I~V~~~~~~~~~~~~   78 (121)
                      ||++++.|..+|+++++++..+++.|+.|++++|.+|++.|+.++.||+|+|+||+|.  -+..+...++..++++++..
T Consensus       238 vy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~  317 (371)
T KOG2605|consen  238 VYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQT  317 (371)
T ss_pred             hhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceecc
Confidence            6999999999999999999999999999999999999999999999999999999996  44445555555556667777


Q ss_pred             cCCCCCCCCeEEEEecCCCcccceecC----CCCCCCCCcccccccC
Q 033361           79 MPQHQAPKRELWLSFWSEVHYNSLYDI----RDAPVPKKPRKKHWLF  121 (121)
Q Consensus        79 ~~~~~~~~~~i~L~y~~~~HYdsv~~~----~~~p~~~~~~~~~~~~  121 (121)
                      .|....+...+++.+....||+.++.-    ......-+.|.++|.+
T Consensus       318 ~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~  364 (371)
T KOG2605|consen  318 PPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRR  364 (371)
T ss_pred             CcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhh
Confidence            665555566677777777999999873    2222333667777754

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.1e-15  Score=111.05  Aligned_cols=95  Identities=16%  Similarity=0.319  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhCccccCCCC-cccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCC
Q 033361            9 KHVRKEVVKQLKDCRSMYEGYV-PMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKR   87 (121)
Q Consensus         9 ~~lR~~vv~ym~~n~~~f~~fi-~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~~~~~~~   87 (121)
                      .+||+.+++-..+||+.|...| +.+-.+||+++.++.+|||-|||..||+.|++.|.|++..... .-.+++ +.....
T Consensus       139 ~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~r-id~fge-d~~~~~  216 (307)
T KOG3288|consen  139 YELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVR-IDRFGE-DKNFDN  216 (307)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecceee-ehhcCC-CCCCCc
Confidence            5899999999999999998555 8899999999999999999999999999999999999875432 123333 323455


Q ss_pred             eEEEEecCCCcccceecCC
Q 033361           88 ELWLSFWSEVHYNSLYDIR  106 (121)
Q Consensus        88 ~i~L~y~~~~HYdsv~~~~  106 (121)
                      .++|.| +|.|||++.--.
T Consensus       217 rv~lly-dGIHYD~l~m~~  234 (307)
T KOG3288|consen  217 RVLLLY-DGIHYDPLAMNE  234 (307)
T ss_pred             eEEEEe-cccccChhhhcc
Confidence            677876 799999996544

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.44  E-value=6.9e-13  Score=99.66  Aligned_cols=94  Identities=21%  Similarity=0.323  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhCccccCCCCc----ccHHHHHHh-cCCCCccCCHHHHHHHHHHhCCcEEEEecCCC---c--eeEEec
Q 033361           10 HVRKEVVKQLKDCRSMYEGYVP----MKYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---T--CFIEIM   79 (121)
Q Consensus        10 ~lR~~vv~ym~~n~~~f~~fi~----~~~~~Yl~~-m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~---~--~~~~~~   79 (121)
                      -+|..++.||+.|++.|++|++    .++++||++ +...+.-+||+.+.|||++++++|.|+..+++   .  ....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            6899999999999999999996    789999976 99999999999999999999999999987643   1  122332


Q ss_pred             CCCCCCCCeEEEEecCCCcccceec
Q 033361           80 PQHQAPKRELWLSFWSEVHYNSLYD  104 (121)
Q Consensus        80 ~~~~~~~~~i~L~y~~~~HYdsv~~  104 (121)
                      |.+....+.|.|.| .++|||.+++
T Consensus       221 ~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CccCCCCCEEEEEE-cCCccccccC
Confidence            22334567899997 5679999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=6e-12  Score=93.27  Aligned_cols=93  Identities=19%  Similarity=0.317  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhCccccCCCCc--ccHHHHHHh-cCCCCccCCHHHHHHHHHHhCCcEEEEecCCCce---eEEecCCC
Q 033361            9 KHVRKEVVKQLKDCRSMYEGYVP--MKYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTC---FIEIMPQH   82 (121)
Q Consensus         9 ~~lR~~vv~ym~~n~~~f~~fi~--~~~~~Yl~~-m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~---~~~~~~~~   82 (121)
                      ..+|..++.+|++|+|.|+|||+  ++.++||.. +.....-.|||+|.|||+++++.|.|...+++..   .....|+ 
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe-  235 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPE-  235 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCcc-
Confidence            36899999999999999999996  799999997 7788899999999999999999999999876532   1122332 


Q ss_pred             CCCCCeEEEEecCCCcccceec
Q 033361           83 QAPKRELWLSFWSEVHYNSLYD  104 (121)
Q Consensus        83 ~~~~~~i~L~y~~~~HYdsv~~  104 (121)
                       .+.+.|.|.| +++|||.|++
T Consensus       236 -~s~P~I~LLY-rpGHYdilY~  255 (256)
T KOG3991|consen  236 -ASAPEIYLLY-RPGHYDILYK  255 (256)
T ss_pred             -ccCceEEEEe-cCCccccccC
Confidence             3577899987 6899999986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=9e-09  Score=78.74  Aligned_cols=67  Identities=12%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCC----Ccccce
Q 033361           32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE----VHYNSL  102 (121)
Q Consensus        32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~~~~~~~~i~L~y~~~----~HYdsv  102 (121)
                      -+|++|++.|..+..||+.+|++|||..|++++.++....+.  +.+++.+....  ..+.|+..    +|||++
T Consensus       234 ~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~--ik~n~c~~~~~--~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         234 VLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPS--IKCNICGTGFV--GEKDYYAHALATGHYNFG  304 (306)
T ss_pred             chHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCce--EEeeccccccc--hhhHHHHHHHhhcCcccc
Confidence            389999999999999999999999999999999999876653  77776554332  33334332    599987

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00012  Score=56.46  Aligned_cols=92  Identities=12%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHhCccccCCCCc-ccHHHHHHhcCCCCccC-CHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCC
Q 033361            8 HKHVRKEVVKQLKDCRSMYEGYVP-MKYKRYYKNMAKVGEWG-DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAP   85 (121)
Q Consensus         8 h~~lR~~vv~ym~~n~~~f~~fi~-~~~~~Yl~~m~~~g~WG-g~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~~~~~   85 (121)
                      -.+||..|+.-+.+|||.|.+.+. -+--.|+.++.++..|| |++|+.++|+.+++.|+++..+++. ..++.+..  .
T Consensus       137 v~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~-~dr~~~~~--~  213 (306)
T COG5539         137 VAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDS-EDRYNSHP--Y  213 (306)
T ss_pred             HHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhH-HhhccCCh--h
Confidence            357899999999999999999995 78889999999999999 9999999999999999999988653 13344322  2


Q ss_pred             CCeEEEEecCCCccccee
Q 033361           86 KRELWLSFWSEVHYNSLY  103 (121)
Q Consensus        86 ~~~i~L~y~~~~HYdsv~  103 (121)
                      ...+.+.| .|.|||...
T Consensus       214 ~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         214 VQRISILF-TGIHFDEET  230 (306)
T ss_pred             hhhhhhhh-cccccchhh
Confidence            23356666 589999875

>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT

Probab=82.37  E-value=0.062  Score=32.98  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=27.1

Q ss_pred             HhCccc-cCCCCc-ccHHHHHHhcCCCCccCCHHHH
Q 033361           20 KDCRSM-YEGYVP-MKYKRYYKNMAKVGEWGDHVTL   53 (121)
Q Consensus        20 ~~n~~~-f~~fi~-~~~~~Yl~~m~~~g~WGg~ieL   53 (121)
                      |+|.+- +..||+ .|+|+=+-.|.+++.|||.+.|
T Consensus         6 R~~~~g~l~~YvpKKDLEE~Vv~~e~~~~WGG~v~L   41 (67)
T TIGR02934         6 RRNRAGELSAYVPKKDLEEVIVSVEKEELWGGWVTL   41 (67)
T ss_pred             EeCCCCCEEEEEECCcchhheeeeecCccccCEEEE
Confidence            555554 778887 7899999999999999997654

This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3pfy_A	185	OTU domain-containing protein 5; structural genomi	7e-23
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-17
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	4e-17
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-10

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 87.1 bits (215), Expect = 7e-23
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 1   MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKF 60
           +Y   + H+ VRK  +  L      +  YV   +  Y     K    G+H+ +QA A+ +
Sbjct: 79  VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMY 138

Query: 61  AAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDA 108
              + +   +           HQ     + +S+   +HYNS+ +   A
Sbjct: 139 NRPVEVY-QYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKA 185

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 72.4 bits (177), Expect = 3e-17
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 8   HKHVRKEVVKQLKDCRSMYEGYVP------MKYKRYYKNMAKVGEWGDHVTLQAAADKFA 61
             H    + +  +     Y    P      +  + Y K M    EWG  +     A +  
Sbjct: 56  TDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMG 115

Query: 62  AKICLLTSFRDTCFIEIM-PQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPR 115
             I + T          +          + L    + H+++L  +       +  
Sbjct: 116 ITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREA 170

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 72.5 bits (177), Expect = 4e-17
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 5/120 (4%)

Query: 1   MYKSPEYHK-HVRKEVVKQLKDC---RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAA 56
              +   H  H  K + +               V +  + Y K M    EWG  +     
Sbjct: 51  TMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110

Query: 57  ADKFAAKICLLTSFRDTCFIEIMPQHQA-PKRELWLSFWSEVHYNSLYDIRDAPVPKKPR 115
           A +    I + T          +          + L    + H+++L  +       +  
Sbjct: 111 AKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREA 170

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 5   PEYHKHVRKEVVKQLKDCRSMY-EGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAK 63
            +  + +R+ V K++ +    + +  +    K Y + + K+  WG  + +   +D  A  
Sbjct: 43  QDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVA 102

Query: 64  ICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKK 113
           I ++    D   IE   + +     L L  ++ +HY+SL       V  K
Sbjct: 103 IYVVDI--DAVKIEKFNEDKFDNYILIL--FNGIHYDSLTMNEFKTVFNK 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.97
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.96
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.86
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.85
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.82
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.69
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	97.14
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	96.39

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.97  E-value=8e-32  Score=194.43  Aligned_cols=104  Identities=21%  Similarity=0.392  Sum_probs=73.5

Q ss_pred             CCCChhhHHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecC
Q 033361            1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMP   80 (121)
Q Consensus         1 lyg~q~~h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~   80 (121)
                      |||+|+.|.+||+.||+||++|++.|++||+++|++||++|+++|+|||++||+|||++|+++|.|++.+... ...+.+
T Consensus        79 L~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~-i~i~~g  157 (185)
T 3pfy_A           79 VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP-INTFHG  157 (185)
T ss_dssp             HHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSSC-SEEECT
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCC-eEEecC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999976432 122222


Q ss_pred             CCCCCCCeEEEEecCCCcccceecC
Q 033361           81 QHQAPKRELWLSFWSEVHYNSLYDI  105 (121)
Q Consensus        81 ~~~~~~~~i~L~y~~~~HYdsv~~~  105 (121)
                      ......++|+|+|++++|||||++-
T Consensus       158 ~~~~~~~~I~L~Y~~~~HYnSv~~p  182 (185)
T 3pfy_A          158 IHQNEDEPIRVSYHRNIHYNSVVNP  182 (185)
T ss_dssp             TSCCTTSCEEEEEETTTEEEEEECC
T ss_pred             ccCCCCCEEEEEECCCCCcccccCC
Confidence            2223568899999999999999753

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.96  E-value=3.8e-29  Score=183.82  Aligned_cols=98  Identities=16%  Similarity=0.241  Sum_probs=86.2

Q ss_pred             CChhhHHHHHHHHHHHHHhCccccC-CCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCC
Q 033361            3 KSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ   81 (121)
Q Consensus         3 g~q~~h~~lR~~vv~ym~~n~~~f~-~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~   81 (121)
                      |+|+.|.+||+.||+||++|++.|. .|++.+|++||++|+++++|||++||+|||++|+++|.|++.... +...+.+.
T Consensus        41 ~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~-~~~~~~~~  119 (212)
T 3by4_A           41 FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAV-KIEKFNED  119 (212)
T ss_dssp             HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTT-EEEEESTT
T ss_pred             CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCC-CeEEeCCC
Confidence            5788999999999999999999997 455899999999999999999999999999999999999997633 34566543


Q ss_pred             CCCCCCeEEEEecCCCcccceec
Q 033361           82 HQAPKRELWLSFWSEVHYNSLYD  104 (121)
Q Consensus        82 ~~~~~~~i~L~y~~~~HYdsv~~  104 (121)
                      .  ..++|+|+|+ |+|||||+.
T Consensus       120 ~--~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A          120 K--FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             T--CSEEEEEEEC-SSCEEEEEE
T ss_pred             C--CCCeEEEEEc-CCcceEEec
Confidence            3  4678999997 899999998

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.94  E-value=2.9e-27  Score=170.65  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=86.3

Q ss_pred             CCCC-hhh-----HHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCc-
Q 033361            1 MYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT-   73 (121)
Q Consensus         1 lyg~-q~~-----h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~-   73 (121)
                      |||+ +..     |.+||+.|++||++|++.  .+++++|++||++|+++|+|||++||+|||++|+++|.|++.+.++ 
T Consensus        51 L~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~  128 (185)
T 3phx_A           51 TMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDE  128 (185)
T ss_dssp             HSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCB
T ss_pred             HhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCC
Confidence            4666 555     999999999999999999  3458999999999999999999999999999999999999876543 


Q ss_pred             --eeEEecCCCCCCCCeEEEEecCCCcccceecCCCC
Q 033361           74 --CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDA  108 (121)
Q Consensus        74 --~~~~~~~~~~~~~~~i~L~y~~~~HYdsv~~~~~~  108 (121)
                        ..+.+.+.  ...++|+|+|++++|||||+++.+-
T Consensus       129 ~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~  163 (185)
T 3phx_A          129 VEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF  163 (185)
T ss_dssp             CCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGG
T ss_pred             ceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCC
Confidence              23555543  2368899999888999999988543

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.94  E-value=1.2e-26  Score=171.05  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             CCCC-hhh-----HHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC--
Q 033361            1 MYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--   72 (121)
Q Consensus         1 lyg~-q~~-----h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~--   72 (121)
                      |||+ +..     |.+||+.|++||++|++.  .+++++|++||++|+++|+|||++||+|||++|+++|+|++.+.+  
T Consensus        51 L~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~  128 (219)
T 3phu_A           51 TMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDE  128 (219)
T ss_dssp             HCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSB
T ss_pred             HhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCC
Confidence            3566 555     999999999999999999  346899999999999999999999999999999999999987654  


Q ss_pred             c-eeEEecCCCCCCCCeEEEEecCCCcccceecCCCCCC
Q 033361           73 T-CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV  110 (121)
Q Consensus        73 ~-~~~~~~~~~~~~~~~i~L~y~~~~HYdsv~~~~~~p~  110 (121)
                      . ..+.+.+.  ...++|+|+|++++|||||+++.+-.+
T Consensus       129 ~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~  165 (219)
T 3phu_A          129 VEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET  165 (219)
T ss_dssp             EEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred             ceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence            2 24555543  236889999988899999999876443

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.86  E-value=1.5e-21  Score=145.18  Aligned_cols=95  Identities=14%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEE--ecCCCC
Q 033361            9 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ   83 (121)
Q Consensus         9 ~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~--~~~~~~   83 (121)
                      ..||..++.||++|+++|+||+++  ++++||+ .|...++||||+||+|||++++++|.|++.+++...+.  ..|.  
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~--  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE--  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence            468999999999999999999974  8999999 79999999999999999999999999999776531111  1232  


Q ss_pred             CCCCeEEEEecCCCcccceecCC
Q 033361           84 APKRELWLSFWSEVHYNSLYDIR  106 (121)
Q Consensus        84 ~~~~~i~L~y~~~~HYdsv~~~~  106 (121)
                      ...+.|+|+|. ++|||+|++..
T Consensus       211 ~~~~~I~LlY~-pgHYdily~~~  232 (234)
T 1tff_A          211 AATPSVYLLYK-TSHYNILYAAD  232 (234)
T ss_dssp             CSSCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCCeEEEEEC-CCCceecccCC
Confidence            24677999997 56999999864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.85  E-value=5.8e-21  Score=142.02  Aligned_cols=93  Identities=18%  Similarity=0.287  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCc---eeEEecCCC
Q 033361            9 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQH   82 (121)
Q Consensus         9 ~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~---~~~~~~~~~   82 (121)
                      ..+|..++.||++|+++|+||+++  ++++||+ .+..+++||||+||+|||++++++|.|++.+++.   ......|.+
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~  215 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG  215 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC
Confidence            479999999999999999999974  8999997 6999999999999999999999999999976542   122223433


Q ss_pred             CCCCCeEEEEecCCCcccceec
Q 033361           83 QAPKRELWLSFWSEVHYNSLYD  104 (121)
Q Consensus        83 ~~~~~~i~L~y~~~~HYdsv~~  104 (121)
                        ..+.|+|+|. ++|||+|++
T Consensus       216 --~~p~I~LlY~-pgHYdiLy~  234 (234)
T 2zfy_A          216 --SEPKVYLLYR-PGHYDILYK  234 (234)
T ss_dssp             --CCCSEEEEEE-TTEEEEEEC
T ss_pred             --CCCeEEEEEC-CCCcccCCC
Confidence              3567999997 569999985

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.82  E-value=5.3e-20  Score=139.84  Aligned_cols=100  Identities=16%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhCccccCCCCc--ccHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC--c--eeEE-ecC
Q 033361            9 KHVRKEVVKQLKDCRSMYEGYVP--MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IMP   80 (121)
Q Consensus         9 ~~lR~~vv~ym~~n~~~f~~fi~--~~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~--~--~~~~-~~~   80 (121)
                      ..||..++.||+.|+++|+||++  .++++||+ +|...++||||+||+|||++++++|.|+..+++  +  .... + |
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p  249 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P  249 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence            47999999999999999999996  48999999 799999999999999999999999999987642  1  1233 4 6


Q ss_pred             CCCC-CCCeEEEEecCCCcccceecCCCCCC
Q 033361           81 QHQA-PKRELWLSFWSEVHYNSLYDIRDAPV  110 (121)
Q Consensus        81 ~~~~-~~~~i~L~y~~~~HYdsv~~~~~~p~  110 (121)
                      .+.. ..+.|.|.| +++|||.|++....|.
T Consensus       250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~  279 (284)
T 4dhi_B          250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEA  279 (284)
T ss_dssp             CCCSCCCCSEEEEE-ETTEEEEEEECC----
T ss_pred             CCCCCCCCEEEEee-cCCCccccccCCCCch
Confidence            5532 346799998 5799999999876554

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.69  E-value=3.9e-17  Score=129.36  Aligned_cols=95  Identities=19%  Similarity=0.288  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC---ceeEEecC
Q 033361            7 YHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---TCFIEIMP   80 (121)
Q Consensus         7 ~h~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~---~~~~~~~~   80 (121)
                      -...||..++.||+.|+++|++|+++  ++++||+ +|...++||||++|+|||++++++|.|+..+++   .......|
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~  378 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP  378 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence            34589999999999999999999974  8999999 899999999999999999999999999976552   11122334


Q ss_pred             CCCCCCCeEEEEecCCCcccceec
Q 033361           81 QHQAPKRELWLSFWSEVHYNSLYD  104 (121)
Q Consensus        81 ~~~~~~~~i~L~y~~~~HYdsv~~  104 (121)
                      .+  ..+.|+|.| .++|||.|++
T Consensus       379 ~~--~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          379 EG--SEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             TT--CCCCCEEEE-ETBEEEEEEC
T ss_pred             CC--CCCEEEEEE-cCCccccCCC
Confidence            43  357899998 5789999985

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=97.14  E-value=0.0026  Score=49.67  Aligned_cols=109  Identities=13%  Similarity=0.197  Sum_probs=71.3

Q ss_pred             CCChhhHHHHHHHHHHHHHhCcc-c-----------cCCCC-----------cccHHHHHHhcCCCCc------c---CC
Q 033361            2 YKSPEYHKHVRKEVVKQLKDCRS-M-----------YEGYV-----------PMKYKRYYKNMAKVGE------W---GD   49 (121)
Q Consensus         2 yg~q~~h~~lR~~vv~ym~~n~~-~-----------f~~fi-----------~~~~~~Yl~~m~~~g~------W---Gg   49 (121)
                      +|-+++...||++..+-|++... .           .+.|.           ..+|+.=++.-+.+..      -   =-
T Consensus       133 WGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~Asp~~~~~~~~~~y~sLE  212 (390)
T 3dkb_A          133 WGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTDTPMARSGLQYNSLE  212 (390)
T ss_dssp             HSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHHTSSCCCSSSSSCSSCCCC
T ss_pred             cCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHHhCCCCCCCCCcchhhhHH
Confidence            67788889999999999998752 1           23343           1567666655444321      1   23


Q ss_pred             HHHHHHHHHHhCCcEEEEecC--CC---ceeE-------EecC----CCCCCCCeEEEEecCCCcccceecCCCCCCC
Q 033361           50 HVTLQAAADKFAAKICLLTSF--RD---TCFI-------EIMP----QHQAPKRELWLSFWSEVHYNSLYDIRDAPVP  111 (121)
Q Consensus        50 ~ieL~Ala~~~~~~I~V~~~~--~~---~~~~-------~~~~----~~~~~~~~i~L~y~~~~HYdsv~~~~~~p~~  111 (121)
                      ++-+.+||.++++||+|+...  ++   ...+       .|.|    ...-...+|.|+|.+ +||.+|+.+++.+++
T Consensus       213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~~~~~  289 (390)
T 3dkb_A          213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKDSGPE  289 (390)
T ss_dssp             HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCSSSSC
T ss_pred             HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-CceeeeeecccCCCC
Confidence            778999999999999999632  11   1001       1222    122346789999975 899999999865443

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=96.39  E-value=0.03  Score=44.52  Aligned_cols=108  Identities=13%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             CCCChhhHHHHHHHHHHHHHhCcccc----------------CCCC--c----ccHHHHHHhcCCCCccCCHHHHHHHHH
Q 033361            1 MYKSPEYHKHVRKEVVKQLKDCRSMY----------------EGYV--P----MKYKRYYKNMAKVGEWGDHVTLQAAAD   58 (121)
Q Consensus         1 lyg~q~~h~~lR~~vv~ym~~n~~~f----------------~~fi--~----~~~~~Yl~~m~~~g~WGg~ieL~Ala~   58 (121)
                      ++|-++....||++..+-|.+....|                -.|.  +    .+|+.=+..-+.+|+==-++-+.+||+
T Consensus       209 mWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As~Pg~sLEeiHIFvLAh  288 (454)
T 3zrh_A          209 TWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAH  288 (454)
T ss_dssp             TTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            57889999999999999998754322                1343  2    577777887888887777888999999


Q ss_pred             HhCCcEEEEecCCCcee-------E----EecCC----CCCCCCeEEEEecCCCcccceecCCCCC
Q 033361           59 KFAAKICLLTSFRDTCF-------I----EIMPQ----HQAPKRELWLSFWSEVHYNSLYDIRDAP  109 (121)
Q Consensus        59 ~~~~~I~V~~~~~~~~~-------~----~~~~~----~~~~~~~i~L~y~~~~HYdsv~~~~~~p  109 (121)
                      ++++||+|+...--..+       +    .|.|-    ..-...+|.|+|.+ .||.+|+.+++.+
T Consensus       289 VLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaLV~~~~~~  353 (454)
T 3zrh_A          289 ILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSALVAMENDG  353 (454)
T ss_dssp             HTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEEEEBCCC-
T ss_pred             HhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeeeeeccccc
Confidence            99999999985311000       1    12221    11246789999975 7999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	9e-10

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 9e-10
 Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 2   YKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKR---YYKNMAKVGEWGDHVTLQAAAD 58
             S    + +R      +++    +  ++  +          +  +    DH+ + A + 
Sbjct: 120 SASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQ 179

Query: 59  KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY 103
             +  + +         +      +A    ++L +    HYN LY
Sbjct: 180 ALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILY 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.81

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.4e-20  Score=134.75  Aligned_cols=97  Identities=13%  Similarity=0.245  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhCccccCCCCc--ccHHHHHHh-cCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCCCCCCC
Q 033361           10 HVRKEVVKQLKDCRSMYEGYVP--MKYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPK   86 (121)
Q Consensus        10 ~lR~~vv~ym~~n~~~f~~fi~--~~~~~Yl~~-m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~~~~~~   86 (121)
                      .+|..++.||+.|++.|.+|++  .++++||.+ |.+.++|||++||+|+|++|+++|.|+..+.+...+.....+....
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4799999999999999999995  589999986 9999999999999999999999999998776533222211222356


Q ss_pred             CeEEEEecCCCcccceecCCC
Q 033361           87 RELWLSFWSEVHYNSLYDIRD  107 (121)
Q Consensus        87 ~~i~L~y~~~~HYdsv~~~~~  107 (121)
                      ++|+|.| .++|||+|++.+.
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~~  227 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAADK  227 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECCC
T ss_pred             CEEEEEe-CCCCcccCccCCC
Confidence            7899998 4689999998753