Your job contains 1 sequence.
>033363
MAQIYSIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMI
KRFSQEYLGESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVSTKGN
L
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033363
(121 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077357 - symbol:AT3G07930 species:3702 "Arabi... 397 6.3e-37 1
UNIPROTKB|O95243 - symbol:MBD4 "Methyl-CpG-binding domain... 203 1.3e-16 2
UNIPROTKB|Q2MD36 - symbol:MBD4 "Methyl-CpG-binding domain... 203 2.3e-16 1
UNIPROTKB|E1BVB1 - symbol:MBD4 "Uncharacterized protein" ... 198 7.7e-16 1
UNIPROTKB|F1P366 - symbol:MBD4 "Uncharacterized protein" ... 198 7.7e-16 1
MGI|MGI:1333850 - symbol:Mbd4 "methyl-CpG binding domain ... 202 2.4e-15 1
UNIPROTKB|E2RL50 - symbol:MBD4 "Uncharacterized protein" ... 201 3.3e-15 1
UNIPROTKB|F1MUX1 - symbol:MBD4 "Uncharacterized protein" ... 200 4.0e-15 1
UNIPROTKB|E9PEE4 - symbol:MBD4 "Methyl-CpG-binding domain... 171 3.3e-13 2
RGD|1585874 - symbol:Mbd4 "methyl-CpG binding domain prot... 167 1.3e-11 1
>TAIR|locus:2077357 [details] [associations]
symbol:AT3G07930 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA;ISS] [GO:0006306
"DNA methylation" evidence=RCA] InterPro:IPR003265
InterPro:IPR011257 Pfam:PF00730 EMBL:CP002686 GO:GO:0003824
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 KO:K10801
EMBL:BT028919 IPI:IPI00543489 RefSeq:NP_974253.1 UniGene:At.40281
ProteinModelPortal:Q0IGK1 STRING:Q0IGK1 EnsemblPlants:AT3G07930.3
GeneID:819984 KEGG:ath:AT3G07930 TAIR:At3g07930 eggNOG:NOG320706
HOGENOM:HOG000119219 InParanoid:Q0IGK1 OMA:LQESWTH PhylomeDB:Q0IGK1
ProtClustDB:CLSN2688163 Genevestigator:Q0IGK1 Uniprot:Q0IGK1
Length = 445
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 73/94 (77%), Positives = 79/94 (84%)
Query: 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHG 80
VISDLF LC DAKTATEV EEIE +I LGLQKKR MI+R S EYL ESWTHVTQLHG
Sbjct: 346 VISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLEYLQESWTHVTQLHG 405
Query: 81 VGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114
VGKYAADA+AIFC G WDRV+P DHMLNYYW++L
Sbjct: 406 VGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439
>UNIPROTKB|O95243 [details] [associations]
symbol:MBD4 "Methyl-CpG-binding domain protein 4"
species:9606 "Homo sapiens" [GO:0000785 "chromatin" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008630 "intrinsic
apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=IEA] [GO:0004520
"endodeoxyribonuclease activity" evidence=TAS] [GO:0008263
"pyrimidine-specific mismatch base pair DNA N-glycosylase activity"
evidence=IDA] [GO:0003696 "satellite DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006285 "base-excision repair, AP site formation" evidence=TAS]
[GO:0045008 "depyrimidination" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_216
InterPro:IPR001739 InterPro:IPR003265 InterPro:IPR011257
InterPro:IPR016177 Pfam:PF00730 Pfam:PF01429 PROSITE:PS50982
SMART:SM00391 GO:GO:0005737 GO:GO:0008630 GO:GO:0005654
Gene3D:1.10.340.30 SUPFAM:SSF48150 EMBL:CH471052 GO:GO:0000785
SUPFAM:SSF54171 GO:GO:0009314 GO:GO:0004520 Gene3D:3.30.890.10
GO:GO:0045008 GO:GO:0003696 EMBL:AF072250 EMBL:AF120999
EMBL:AF120997 EMBL:AF120998 EMBL:AF114784 EMBL:AF532602
EMBL:CR450305 EMBL:AF494057 EMBL:BC011752 IPI:IPI00426727
IPI:IPI00426728 IPI:IPI00426729 RefSeq:NP_003916.1 UniGene:Hs.35947
PDB:3IHO PDB:4DK9 PDB:4E9E PDB:4E9F PDB:4E9G PDB:4E9H PDB:4EA4
PDB:4EA5 PDBsum:3IHO PDBsum:4DK9 PDBsum:4E9E PDBsum:4E9F
PDBsum:4E9G PDBsum:4E9H PDBsum:4EA4 PDBsum:4EA5
ProteinModelPortal:O95243 SMR:O95243 IntAct:O95243 MINT:MINT-264766
STRING:O95243 PhosphoSite:O95243 PaxDb:O95243 PRIDE:O95243
Ensembl:ENST00000249910 Ensembl:ENST00000429544
Ensembl:ENST00000503197 GeneID:8930 KEGG:hsa:8930 UCSC:uc003emh.1
UCSC:uc003emi.1 UCSC:uc003emj.1 CTD:8930 GeneCards:GC03M129149
HGNC:HGNC:6919 HPA:HPA002031 MIM:603574 neXtProt:NX_O95243
PharmGKB:PA30663 eggNOG:NOG264445 HOGENOM:HOG000113489
HOVERGEN:HBG052418 InParanoid:O95243 KO:K10801 OMA:RTADWRD
OrthoDB:EOG48GW3R PhylomeDB:O95243 EvolutionaryTrace:O95243
GenomeRNAi:8930 NextBio:33578 ArrayExpress:O95243 Bgee:O95243
CleanEx:HS_MBD4 CleanEx:HS_MED1 Genevestigator:O95243
GermOnline:ENSG00000129071 GO:GO:0008263 InterPro:IPR017352
PIRSF:PIRSF038005 Uniprot:O95243
Length = 580
Score = 203 (76.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 486 PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 545
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 546 RIFCVNEWKQVHPEDHKLNKYHDWL 570
Score = 34 (17.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTA 35
S+ +E +++ K R +S C + KT+
Sbjct: 301 SVTSEENSLVKKKERSLSSGSNFCSEQKTS 330
>UNIPROTKB|Q2MD36 [details] [associations]
symbol:MBD4 "Methyl-CpG-binding domain protein 4"
species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 GO:GO:0003824
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 EMBL:AL449212
IPI:IPI00426729 UniGene:Hs.35947 HGNC:HGNC:6919 EMBL:AM180876
SMR:Q2MD36 STRING:Q2MD36 Ensembl:ENST00000393278 UCSC:uc003emk.1
HOGENOM:HOG000128263 Uniprot:Q2MD36
Length = 262
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 168 PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 227
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 228 RIFCVNEWKQVHPEDHKLNKYHDWL 252
>UNIPROTKB|E1BVB1 [details] [associations]
symbol:MBD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000785 "chromatin" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008263 "pyrimidine-specific mismatch
base pair DNA N-glycosylase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=IEA]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 GO:GO:0005634
GO:GO:0005737 GO:GO:0008630 GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677 GO:GO:0000785
GO:GO:0009314 GeneTree:ENSGT00530000063687 EMBL:AADN02014522
EMBL:AADN02014523 IPI:IPI00591821 Ensembl:ENSGALT00000013725
ArrayExpress:E1BVB1 Uniprot:E1BVB1
Length = 108
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P + A D +E+ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 14 PSPEVARTADWKEMSELLRPLGLYALRAKTIIKFSDEYLNKQWKYPIELHGIGKYGNDSY 73
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W V+P DH LN Y +L
Sbjct: 74 RIFCVNEWKEVQPQDHKLNIYHAWL 98
>UNIPROTKB|F1P366 [details] [associations]
symbol:MBD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0000785 "chromatin" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008263 "pyrimidine-specific mismatch
base pair DNA N-glycosylase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009314 "response to radiation" evidence=IEA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=IEA]
InterPro:IPR003265 InterPro:IPR011257 Pfam:PF00730 GO:GO:0005634
GO:GO:0005737 GO:GO:0008630 GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677 GO:GO:0000785
GO:GO:0009314 GeneTree:ENSGT00530000063687 EMBL:AADN02014522
EMBL:AADN02014523 IPI:IPI00601580 Ensembl:ENSGALT00000033241
OMA:WKEVQPQ ArrayExpress:F1P366 Uniprot:F1P366
Length = 199
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P + A D +E+ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 105 PSPEVARTADWKEMSELLRPLGLYALRAKTIIKFSDEYLNKQWKYPIELHGIGKYGNDSY 164
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W V+P DH LN Y +L
Sbjct: 165 RIFCVNEWKEVQPQDHKLNIYHAWL 189
>MGI|MGI:1333850 [details] [associations]
symbol:Mbd4 "methyl-CpG binding domain protein 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0006306 "DNA methylation" evidence=TAS] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0008152 "metabolic
process" evidence=ISO] [GO:0008263 "pyrimidine-specific mismatch
base pair DNA N-glycosylase activity" evidence=ISO] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IMP] [GO:0009314 "response to radiation" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0031572 "G2 DNA
damage checkpoint" evidence=IMP] InterPro:IPR001739
InterPro:IPR003265 InterPro:IPR011257 InterPro:IPR016177
Pfam:PF00730 Pfam:PF01429 PROSITE:PS50982 SMART:SM00391
MGI:MGI:1333850 GO:GO:0005634 GO:GO:0005737 GO:GO:0008630
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677
GO:GO:0000785 GO:GO:0016787 SUPFAM:SSF54171 GO:GO:0006306
GO:GO:0009314 GO:GO:0031572 Gene3D:3.30.890.10 CTD:8930
eggNOG:NOG264445 HOGENOM:HOG000113489 HOVERGEN:HBG052418 KO:K10801
OrthoDB:EOG48GW3R InterPro:IPR017352 PIRSF:PIRSF038005
EMBL:AF072249 EMBL:AF120996 EMBL:BC024812 IPI:IPI00321709
RefSeq:NP_034904.2 UniGene:Mm.259308 PDB:1NGN PDB:3VXV PDB:3VXX
PDB:3VYB PDB:3VYQ PDB:4EVV PDB:4EW0 PDB:4EW4 PDBsum:1NGN
PDBsum:3VXV PDBsum:3VXX PDBsum:3VYB PDBsum:3VYQ PDBsum:4EVV
PDBsum:4EW0 PDBsum:4EW4 ProteinModelPortal:Q9Z2D7 SMR:Q9Z2D7
STRING:Q9Z2D7 PhosphoSite:Q9Z2D7 PRIDE:Q9Z2D7
Ensembl:ENSMUST00000032469 GeneID:17193 KEGG:mmu:17193
UCSC:uc009dje.2 GeneTree:ENSGT00530000063687 InParanoid:Q9Z2D7
EvolutionaryTrace:Q9Z2D7 NextBio:291542 Bgee:Q9Z2D7 CleanEx:MM_MBD4
Genevestigator:Q9Z2D7 GermOnline:ENSMUSG00000030322 Uniprot:Q9Z2D7
Length = 554
Score = 202 (76.2 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 460 PSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSY 519
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 520 RIFCVNEWKQVHPEDHKLNKYHDWL 544
>UNIPROTKB|E2RL50 [details] [associations]
symbol:MBD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001739 InterPro:IPR003265 InterPro:IPR011257
InterPro:IPR016177 Pfam:PF00730 Pfam:PF01429 PROSITE:PS50982
SMART:SM00391 GO:GO:0005634 GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677 SUPFAM:SSF54171
Gene3D:3.30.890.10 CTD:8930 KO:K10801 OMA:RTADWRD
InterPro:IPR017352 PIRSF:PIRSF038005 GeneTree:ENSGT00530000063687
EMBL:AAEX03012060 RefSeq:XP_003432809.1 Ensembl:ENSCAFT00000007837
GeneID:100684130 KEGG:cfa:100684130 Uniprot:E2RL50
Length = 570
Score = 201 (75.8 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 476 PSAEVARTADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSY 535
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 536 RIFCINEWKQVHPEDHKLNKYHDWL 560
>UNIPROTKB|F1MUX1 [details] [associations]
symbol:MBD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031572 "G2 DNA damage checkpoint" evidence=IEA]
[GO:0009314 "response to radiation" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008263 "pyrimidine-specific mismatch base pair
DNA N-glycosylase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] InterPro:IPR001739
InterPro:IPR003265 InterPro:IPR011257 InterPro:IPR016177
Pfam:PF00730 Pfam:PF01429 PROSITE:PS50982 SMART:SM00391
GO:GO:0005634 GO:GO:0005737 GO:GO:0008630 GO:GO:0003824
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677
GO:GO:0000785 SUPFAM:SSF54171 GO:GO:0009314 Gene3D:3.30.890.10
OMA:RTADWRD InterPro:IPR017352 PIRSF:PIRSF038005
GeneTree:ENSGT00530000063687 EMBL:DAAA02054573 IPI:IPI00713653
UniGene:Bt.49400 Ensembl:ENSBTAT00000028844 Uniprot:F1MUX1
Length = 554
Score = 200 (75.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ + + LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 460 PSAEAARTADWRDVSEFLKPLGLYDLRAKTIIKFSDEYLTKQWKYPIELHGIGKYGNDSY 519
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 520 RIFCVNEWKQVHPEDHKLNKYHDWL 544
>UNIPROTKB|E9PEE4 [details] [associations]
symbol:MBD4 "Methyl-CpG-binding domain protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001739 InterPro:IPR003265 InterPro:IPR011257
InterPro:IPR016177 Pfam:PF00730 Pfam:PF01429 PROSITE:PS50982
SMART:SM00391 GO:GO:0005634 GO:GO:0003824 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0003677 SUPFAM:SSF54171
Gene3D:3.30.890.10 EMBL:AL449212 HGNC:HGNC:6919 InterPro:IPR017352
PIRSF:PIRSF038005 IPI:IPI00791816 ProteinModelPortal:E9PEE4
SMR:E9PEE4 Ensembl:ENST00000507208 UCSC:uc011bkw.1
ArrayExpress:E9PEE4 Bgee:E9PEE4 Uniprot:E9PEE4
Length = 572
Score = 171 (65.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 486 PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 545
Query: 90 AIFCTGKWDRVRPT 103
IFC +W +VR T
Sbjct: 546 RIFCVNEWKQVRLT 559
Score = 34 (17.0 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTA 35
S+ +E +++ K R +S C + KT+
Sbjct: 301 SVTSEENSLVKKKERSLSSGSNFCSEQKTS 330
>RGD|1585874 [details] [associations]
symbol:Mbd4 "methyl-CpG binding domain protein 4" species:10116
"Rattus norvegicus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008263 "pyrimidine-specific
mismatch base pair DNA N-glycosylase activity" evidence=ISO]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=ISO] [GO:0009314 "response to radiation"
evidence=ISO] [GO:0031572 "G2 DNA damage checkpoint" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001739
InterPro:IPR011257 InterPro:IPR016177 Pfam:PF01429 GO:GO:0005634
GO:GO:0005737 GO:GO:0008630 GO:GO:0003824 Gene3D:1.10.340.30
SUPFAM:SSF48150 GO:GO:0003677 GO:GO:0006281 GO:GO:0000785
SUPFAM:SSF54171 GO:GO:0009314 Gene3D:3.30.890.10 OrthoDB:EOG48GW3R
GeneTree:ENSGT00530000063687 IPI:IPI00358415
Ensembl:ENSRNOT00000014537 Uniprot:D4A9W8
Length = 530
Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 50 LGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNY 109
L L RA I +FS EYL + W + +LHG+GKY D++ IFC +W +V P DH LN
Sbjct: 456 LELYDLRAKTIIKFSDEYLTKPWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNK 515
Query: 110 YWEFL 114
Y ++L
Sbjct: 516 YHDWL 520
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 121 121 0.00091 102 3 11 22 0.46 30
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 602 (64 KB)
Total size of DFA: 139 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.94u 0.11s 13.05t Elapsed: 00:00:00
Total cpu time: 12.94u 0.11s 13.05t Elapsed: 00:00:00
Start: Sat May 11 00:33:18 2013 End: Sat May 11 00:33:18 2013