BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033363
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 460 PSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSY 519
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 520 RIFCVNEWKQVHPEDHKLNKYHDWL 544
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 30 PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAF 89
P A+ A D ++ +++ LGL RA I +FS EYL + W + +LHG+GKY D++
Sbjct: 486 PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 545
Query: 90 AIFCTGKWDRVRPTDHMLNYYWEFL 114
IFC +W +V P DH LN Y ++L
Sbjct: 546 RIFCVNEWKQVHPEDHKLNKYHDWL 570
>sp|Q7NBV2|DER_MYCGA GTPase Der OS=Mycoplasma gallisepticum (strain R(low / passage 15 /
clone 2)) GN=der PE=3 SV=2
Length = 456
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 15 LLKAGRV-ISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKR--APMIKRFS----QEY 67
LLK RV +SD+ DA AT +E+ K+I T G+++K A I++FS Q+
Sbjct: 195 LLKKERVLVSDIPGTTRDAIDATFSYNKELYKVIDTAGIRRKGKIATRIEKFSVQRTQQA 254
Query: 68 LGESWTHVTQLHG----------VGK--YAADAFAIFCTGKWDRVRPTDHMLNYY 110
+ S + L G +G Y A+ I KWD V+ D + +
Sbjct: 255 ISRSKMILLMLDGSVDLSEQDEVIGGLCYEANLPTIIVVNKWDLVKKDDKTMELF 309
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 25 LFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVT-------Q 77
LF PDA E+++++ + G + +A I R SQE +G V
Sbjct: 69 LFARFPDAHAMAAATEPELQELVRSTGFYRNKASAILRLSQELVGRHDGEVPARLEDLVA 128
Query: 78 LHGVGKYAA 86
L GVG+ A
Sbjct: 129 LPGVGRKTA 137
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 39 DAEEIEKIISTLGLQKKRAPMIKRFS 64
D +E+E + TLGLQK AP I FS
Sbjct: 121 DVDELEGSLRTLGLQKVNAPTISSFS 146
>sp|Q7VKV4|RUVA_HAEDU Holliday junction ATP-dependent DNA helicase RuvA OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=ruvA PE=3 SV=1
Length = 201
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 60 IKRFSQEYLGESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVST 117
+ +F+ E +T++ GVG+ A+ + GK+ + TD + + E +V+T
Sbjct: 95 VVQFANAVENEELVKLTKIPGVGRKTAERLLVELKGKFKGIAQTDFFVEHSHETMVAT 152
>sp|A6VFI9|ARGJ_METM7 Arginine biosynthesis bifunctional protein ArgJ OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=argJ PE=3
SV=1
Length = 408
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 4 IYSIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGL 52
I I L++ AIL+K+G I+D T P+ K A E+ E+ KII L +
Sbjct: 337 ISDISLEKQAILVKSGEQIADCGT--PELKLAEEIMKEDKIKIIVDLKM 383
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 17 KAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMI----KRFSQEYLGESW 72
+ +V LF PDA D +EIE++I + G + +A I ++ +E+ GE
Sbjct: 55 RVNKVTPALFQRYPDANALAYGDRQEIEELIHSTGFFRNKAKNIQGACRKIVEEFDGEVP 114
Query: 73 THVTQ---LHGVGKYAAD-----AFAIF 92
+ + L GV + A+ AF I
Sbjct: 115 QRMEELLTLPGVARKTANVVLAHAFGIL 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,726,274
Number of Sequences: 539616
Number of extensions: 1544670
Number of successful extensions: 3874
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3865
Number of HSP's gapped (non-prelim): 15
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)