Query 033363
Match_columns 121
No_of_seqs 189 out of 1029
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e9f_A Methyl-CPG-binding doma 100.0 2.9E-35 9.8E-40 212.9 10.4 114 5-118 32-149 (161)
2 1orn_A Endonuclease III; DNA r 99.9 5E-27 1.7E-31 177.1 12.9 107 6-114 39-152 (226)
3 1kea_A Possible G-T mismatches 99.9 6.1E-27 2.1E-31 176.0 12.5 108 7-116 42-156 (221)
4 2abk_A Endonuclease III; DNA-r 99.9 3.9E-27 1.3E-31 175.8 9.8 107 6-114 35-148 (211)
5 1kg2_A A/G-specific adenine gl 99.9 2.3E-26 7.9E-31 173.1 12.6 106 8-116 38-150 (225)
6 1pu6_A 3-methyladenine DNA gly 99.9 4.3E-26 1.5E-30 171.2 11.5 107 5-113 35-159 (218)
7 3n5n_X A/G-specific adenine DN 99.9 1.4E-25 4.8E-30 174.8 13.1 105 8-115 57-169 (287)
8 4b21_A Probable DNA-3-methylad 99.9 2.3E-25 7.9E-30 168.9 11.7 109 4-117 64-194 (232)
9 2h56_A DNA-3-methyladenine gly 99.9 3.8E-25 1.3E-29 167.5 12.0 108 5-116 56-181 (233)
10 2yg9_A DNA-3-methyladenine gly 99.9 4E-25 1.4E-29 166.7 11.7 106 4-114 65-187 (225)
11 3s6i_A DNA-3-methyladenine gly 99.9 6.9E-25 2.4E-29 165.8 11.5 107 6-117 56-183 (228)
12 3fsp_A A/G-specific adenine gl 99.9 8.6E-25 2.9E-29 174.3 11.2 109 5-116 40-159 (369)
13 1mpg_A ALKA, 3-methyladenine D 99.9 6.6E-24 2.3E-28 164.2 9.7 104 4-111 117-245 (282)
14 2jhn_A ALKA, 3-methyladenine D 99.9 6E-23 2.1E-27 159.9 8.4 107 5-116 123-252 (295)
15 3i0w_A 8-oxoguanine-DNA-glycos 99.9 4.1E-22 1.4E-26 155.1 11.9 107 4-116 119-253 (290)
16 3n0u_A Probable N-glycosylase/ 99.9 3.2E-22 1.1E-26 150.6 8.1 97 10-114 60-169 (219)
17 3fhf_A Mjogg, N-glycosylase/DN 99.9 7.1E-22 2.4E-26 148.3 9.1 101 6-114 50-164 (214)
18 3fhg_A Mjogg, N-glycosylase/DN 99.9 1E-21 3.5E-26 146.3 9.7 101 6-114 39-156 (207)
19 2xhi_A N-glycosylase/DNA lyase 99.9 1.6E-21 5.4E-26 155.9 11.2 105 6-115 158-294 (360)
20 2ztd_A Holliday junction ATP-d 96.3 0.011 3.8E-07 43.8 6.8 56 41-96 84-146 (212)
21 4gfj_A Topoisomerase V; helix- 96.2 0.0033 1.1E-07 51.7 3.8 64 23-90 532-639 (685)
22 1ixr_A Holliday junction DNA h 96.0 0.021 7.3E-07 41.5 6.8 50 47-96 75-130 (191)
23 1z00_A DNA excision repair pro 95.9 0.02 6.7E-07 36.2 5.5 46 51-96 26-74 (89)
24 1x2i_A HEF helicase/nuclease; 95.9 0.024 8.1E-07 34.1 5.7 45 51-95 21-68 (75)
25 1kft_A UVRC, excinuclease ABC 95.8 0.013 4.3E-07 36.2 4.3 41 52-92 32-75 (78)
26 2fmp_A DNA polymerase beta; nu 95.7 0.032 1.1E-06 43.7 7.1 54 40-93 19-77 (335)
27 2a1j_B DNA excision repair pro 95.5 0.021 7.2E-07 36.3 4.5 45 51-95 39-86 (91)
28 4glx_A DNA ligase; inhibitor, 95.3 0.044 1.5E-06 46.1 7.2 71 20-93 457-564 (586)
29 1cuk_A RUVA protein; DNA repai 95.3 0.027 9.2E-07 41.3 5.3 46 48-93 77-128 (203)
30 2ihm_A POL MU, DNA polymerase 95.3 0.033 1.1E-06 44.0 6.1 54 40-94 24-82 (360)
31 2bcq_A DNA polymerase lambda; 95.0 0.06 2E-06 42.2 6.7 50 42-92 22-76 (335)
32 1jms_A Terminal deoxynucleotid 95.0 0.044 1.5E-06 43.7 5.9 54 40-94 43-101 (381)
33 3vdp_A Recombination protein R 94.8 0.025 8.4E-07 42.0 3.8 29 69-97 22-50 (212)
34 2csb_A Topoisomerase V, TOP61; 94.8 0.12 4.1E-06 40.4 7.8 70 21-98 366-435 (519)
35 2a1j_A DNA repair endonuclease 94.6 0.072 2.5E-06 31.8 4.9 39 21-64 16-55 (63)
36 2duy_A Competence protein come 94.5 0.0029 9.9E-08 39.0 -1.7 54 32-91 18-71 (75)
37 2duy_A Competence protein come 94.5 0.025 8.5E-07 34.6 2.6 22 71-92 25-46 (75)
38 1vdd_A Recombination protein R 94.3 0.039 1.3E-06 41.3 3.8 29 69-97 8-36 (228)
39 1s5l_U Photosystem II 12 kDa e 94.2 0.029 1E-06 38.8 2.7 48 35-91 57-107 (134)
40 2edu_A Kinesin-like protein KI 93.9 0.12 4.2E-06 33.1 5.3 59 32-93 31-90 (98)
41 2a1j_A DNA repair endonuclease 93.4 0.047 1.6E-06 32.6 2.4 23 72-95 3-25 (63)
42 2owo_A DNA ligase; protein-DNA 93.0 0.29 9.8E-06 41.8 7.4 69 22-93 459-564 (671)
43 2bgw_A XPF endonuclease; hydro 92.8 0.14 4.6E-06 37.2 4.5 43 51-93 169-214 (219)
44 1z00_B DNA repair endonuclease 92.6 0.19 6.4E-06 31.9 4.4 40 21-64 30-69 (84)
45 3arc_U Photosystem II 12 kDa e 92.5 0.013 4.5E-07 38.4 -1.2 55 29-91 14-70 (97)
46 2fmp_A DNA polymerase beta; nu 92.5 0.38 1.3E-05 37.5 7.0 41 51-91 64-116 (335)
47 2kp7_A Crossover junction endo 92.2 0.18 6E-06 32.2 4.0 35 56-90 36-75 (87)
48 1s5l_U Photosystem II 12 kDa e 92.1 0.088 3E-06 36.4 2.6 20 71-90 61-80 (134)
49 1wcn_A Transcription elongatio 92.0 0.16 5.5E-06 31.0 3.5 40 24-66 22-62 (70)
50 1z00_B DNA repair endonuclease 91.9 0.094 3.2E-06 33.3 2.4 24 71-95 16-39 (84)
51 2i5h_A Hypothetical protein AF 91.9 0.055 1.9E-06 39.9 1.4 23 71-93 130-152 (205)
52 3arc_U Photosystem II 12 kDa e 91.3 0.065 2.2E-06 35.0 1.2 21 71-91 24-44 (97)
53 1dgs_A DNA ligase; AMP complex 91.2 0.17 5.8E-06 43.2 3.9 23 71-93 537-559 (667)
54 2ihm_A POL MU, DNA polymerase 91.0 0.34 1.2E-05 38.2 5.3 21 71-91 100-120 (360)
55 2edu_A Kinesin-like protein KI 90.9 0.15 5E-06 32.8 2.6 24 70-93 37-60 (98)
56 1ixr_A Holliday junction DNA h 90.8 0.16 5.4E-06 36.8 2.9 21 72-92 71-91 (191)
57 2ztd_A Holliday junction ATP-d 90.6 0.15 5.3E-06 37.6 2.7 21 71-91 86-106 (212)
58 3c1y_A DNA integrity scanning 89.9 0.31 1.1E-05 39.0 4.1 46 20-68 326-371 (377)
59 3b0x_A DNA polymerase beta fam 89.8 0.62 2.1E-05 38.6 6.1 49 41-89 90-144 (575)
60 2jg6_A DNA-3-methyladenine gly 89.8 4.3 0.00015 29.3 9.9 49 21-69 52-104 (186)
61 2w9m_A Polymerase X; SAXS, DNA 89.3 0.4 1.4E-05 39.8 4.6 49 41-89 94-147 (578)
62 1cuk_A RUVA protein; DNA repai 89.0 0.24 8.1E-06 36.2 2.7 20 72-91 72-91 (203)
63 1z00_A DNA excision repair pro 88.7 1.4 4.6E-05 27.4 5.8 41 21-64 31-71 (89)
64 1jms_A Terminal deoxynucleotid 88.5 0.42 1.4E-05 38.0 4.0 21 71-91 119-139 (381)
65 3sgi_A DNA ligase; HET: DNA AM 88.5 0.086 2.9E-06 44.6 0.0 25 71-95 559-583 (615)
66 1kft_A UVRC, excinuclease ABC 88.2 0.81 2.8E-05 27.8 4.4 39 22-63 37-75 (78)
67 1x2i_A HEF helicase/nuclease; 88.1 1.3 4.5E-05 26.1 5.3 41 21-64 26-66 (75)
68 2ofk_A 3-methyladenine DNA gly 87.5 5.7 0.00019 28.6 9.1 49 21-69 52-104 (183)
69 2bcq_A DNA polymerase lambda; 87.4 0.29 9.9E-06 38.2 2.4 40 51-90 64-113 (335)
70 2a1j_B DNA excision repair pro 86.7 1.4 4.8E-05 27.5 5.0 41 21-64 44-84 (91)
71 1u9l_A Transcription elongatio 86.7 0.86 2.9E-05 27.8 3.8 40 27-69 25-64 (70)
72 1z3e_B DNA-directed RNA polyme 85.2 0.74 2.5E-05 28.3 3.0 44 47-91 11-59 (73)
73 2w9m_A Polymerase X; SAXS, DNA 83.9 0.58 2E-05 38.9 2.7 22 71-92 95-116 (578)
74 3k4g_A DNA-directed RNA polyme 83.5 1.3 4.5E-05 28.2 3.7 44 47-91 14-62 (86)
75 4gfj_A Topoisomerase V; helix- 82.4 0.81 2.8E-05 37.8 2.9 42 22-67 481-522 (685)
76 1dgs_A DNA ligase; AMP complex 82.2 1.3 4.3E-05 37.9 4.1 68 21-91 453-525 (667)
77 1vq8_Y 50S ribosomal protein L 82.1 0.27 9.2E-06 36.9 0.0 41 50-92 21-67 (241)
78 2bgw_A XPF endonuclease; hydro 80.9 2.4 8.1E-05 30.5 4.8 42 20-64 173-214 (219)
79 1b22_A DNA repair protein RAD5 80.2 0.72 2.5E-05 30.7 1.6 41 24-67 40-81 (114)
80 3gfk_B DNA-directed RNA polyme 80.1 1.4 4.9E-05 27.5 2.9 44 47-91 18-66 (79)
81 3r8n_M 30S ribosomal protein S 78.8 1.4 4.9E-05 29.4 2.7 26 72-97 15-40 (114)
82 1vq8_Y 50S ribosomal protein L 78.3 0.43 1.5E-05 35.8 0.0 44 23-69 29-73 (241)
83 3b0x_A DNA polymerase beta fam 77.7 6.9 0.00024 32.3 7.2 21 75-96 95-115 (575)
84 3u5c_S 40S ribosomal protein S 74.6 2.1 7E-05 29.8 2.7 25 73-97 30-54 (146)
85 3c65_A Uvrabc system protein C 74.5 0.62 2.1E-05 34.7 0.0 19 71-90 203-221 (226)
86 2nrt_A Uvrabc system protein C 74.2 4.2 0.00014 30.1 4.4 23 24-46 183-205 (220)
87 3iz6_M 40S ribosomal protein S 72.7 2.5 8.6E-05 29.6 2.8 26 72-97 27-52 (152)
88 3sgi_A DNA ligase; HET: DNA AM 72.4 0.76 2.6E-05 38.9 0.0 74 21-96 469-551 (615)
89 3im1_A Protein SNU246, PRE-mRN 72.3 4.4 0.00015 30.9 4.4 41 48-90 131-174 (328)
90 3j20_O 30S ribosomal protein S 72.1 2.2 7.7E-05 29.7 2.4 26 72-97 22-47 (148)
91 3bqs_A Uncharacterized protein 71.8 1.1 3.8E-05 28.8 0.7 24 72-95 3-26 (93)
92 2xzm_M RPS18E; ribosome, trans 71.6 2.6 8.9E-05 29.6 2.7 23 72-94 29-51 (155)
93 2kz5_A Transcription factor NF 71.6 7.4 0.00025 24.9 4.5 37 31-67 36-72 (91)
94 1skn_P DNA-binding domain of S 71.0 7.7 0.00026 24.9 4.5 39 31-69 32-70 (92)
95 2nrt_A Uvrabc system protein C 70.9 2.3 7.7E-05 31.5 2.3 24 73-97 168-191 (220)
96 3mab_A Uncharacterized protein 69.8 1.2 4E-05 28.7 0.5 24 72-95 3-26 (93)
97 3c1y_A DNA integrity scanning 69.7 5.5 0.00019 31.8 4.4 21 70-90 344-364 (377)
98 3bzc_A TEX; helix-turn-helix, 69.4 2.7 9.2E-05 36.5 2.8 53 38-94 505-559 (785)
99 1rxw_A Flap structure-specific 69.1 3 0.0001 32.1 2.8 20 72-91 234-253 (336)
100 1exn_A 5'-exonuclease, 5'-nucl 69.0 2.2 7.7E-05 32.7 2.0 22 70-91 200-221 (290)
101 1b22_A DNA repair protein RAD5 68.3 2.1 7.2E-05 28.4 1.5 26 70-95 55-80 (114)
102 2rhf_A DNA helicase RECQ; HRDC 68.0 4.8 0.00016 24.2 3.0 30 58-88 33-62 (77)
103 2lz1_A Nuclear factor erythroi 67.2 13 0.00046 23.7 5.0 38 29-66 33-71 (90)
104 1a76_A Flap endonuclease-1 pro 66.4 3.8 0.00013 31.4 2.8 41 46-92 203-244 (326)
105 3psf_A Transcription elongatio 66.0 1.9 6.4E-05 38.6 1.1 45 50-94 723-769 (1030)
106 3ory_A Flap endonuclease 1; hy 65.7 3.9 0.00013 32.1 2.8 39 47-91 230-269 (363)
107 3psi_A Transcription elongatio 65.6 2.6 8.7E-05 38.4 1.9 45 50-94 720-766 (1219)
108 2vqe_M 30S ribosomal protein S 65.5 2.2 7.4E-05 29.0 1.1 22 72-93 16-37 (126)
109 2izo_A FEN1, flap structure-sp 65.1 3.6 0.00012 31.8 2.5 28 72-100 232-260 (346)
110 1b43_A Protein (FEN-1); nuclea 63.8 4.6 0.00016 31.1 2.9 44 46-96 215-259 (340)
111 3q8k_A Flap endonuclease 1; he 63.0 3.3 0.00011 32.2 1.9 17 75-91 234-250 (341)
112 2b1e_A Exocyst complex compone 59.8 3.7 0.00013 34.0 1.8 37 15-51 523-563 (564)
113 2kv2_A Bloom syndrome protein; 58.9 6.6 0.00022 24.2 2.5 29 58-87 35-63 (85)
114 1ul1_X Flap endonuclease-1; pr 58.3 8.8 0.0003 30.1 3.6 39 47-91 212-250 (379)
115 1wud_A ATP-dependent DNA helic 57.8 8.8 0.0003 23.8 2.9 29 58-87 41-69 (89)
116 1ci4_A Protein (barrier-TO-aut 57.0 6.9 0.00024 25.0 2.3 24 73-96 18-41 (89)
117 3c65_A Uvrabc system protein C 56.5 2.3 7.9E-05 31.5 0.0 38 22-63 186-223 (226)
118 3e1s_A Exodeoxyribonuclease V, 56.0 2.5 8.5E-05 35.0 0.1 68 40-113 7-80 (574)
119 2va8_A SSO2462, SKI2-type heli 54.3 26 0.00089 29.0 6.1 47 49-96 631-680 (715)
120 2e1f_A Werner syndrome ATP-dep 54.2 9.4 0.00032 24.6 2.7 30 58-88 43-72 (103)
121 3qe9_Y Exonuclease 1; exonucle 52.1 6.6 0.00023 30.6 2.0 18 75-92 227-244 (352)
122 2q0z_X Protein Pro2281; SEC63, 51.5 21 0.00073 27.2 4.8 41 49-90 135-178 (339)
123 2pft_A Exocytosis protein; hel 50.6 16 0.00053 30.1 4.1 36 15-50 525-566 (571)
124 1coo_A RNA polymerase alpha su 50.3 15 0.00051 23.7 3.1 44 47-91 26-74 (98)
125 3psf_A Transcription elongatio 50.3 37 0.0013 30.4 6.6 23 71-93 715-737 (1030)
126 2rrd_A BLM HRDC domain, HRDC d 48.9 12 0.00041 23.9 2.6 29 58-87 50-78 (101)
127 2ziu_A MUS81 protein; helix-ha 44.7 13 0.00045 28.0 2.6 20 72-91 236-255 (311)
128 3bzc_A TEX; helix-turn-helix, 44.7 13 0.00046 32.2 2.9 22 71-92 506-527 (785)
129 2owo_A DNA ligase; protein-DNA 43.2 34 0.0012 29.2 5.1 42 21-65 524-565 (671)
130 2dgz_A Werner syndrome protein 43.0 7.4 0.00025 25.6 0.8 27 58-85 50-76 (113)
131 2js5_A Uncharacterized protein 42.0 22 0.00075 21.7 2.8 50 39-91 4-53 (71)
132 2i1q_A DNA repair and recombin 41.9 38 0.0013 25.1 4.7 40 27-69 22-61 (322)
133 3csx_A Putative uncharacterize 39.4 12 0.00039 23.5 1.2 49 40-91 17-65 (81)
134 3psi_A Transcription elongatio 39.2 53 0.0018 30.0 5.9 23 71-93 712-734 (1219)
135 1ucv_A Ephrin type-A receptor 38.3 64 0.0022 19.3 5.4 55 20-83 21-78 (81)
136 2zj8_A DNA helicase, putative 38.0 35 0.0012 28.3 4.4 45 49-94 620-667 (720)
137 2rnn_A E3 SUMO-protein ligase 36.5 52 0.0018 21.8 4.2 37 33-69 35-73 (114)
138 2kvu_A MKL/myocardin-like prot 36.1 26 0.00088 21.6 2.4 40 30-69 21-62 (75)
139 3im1_A Protein SNU246, PRE-mRN 35.8 72 0.0025 24.0 5.5 36 29-67 178-213 (328)
140 3lda_A DNA repair protein RAD5 35.7 83 0.0028 24.6 6.0 45 22-69 96-141 (400)
141 3bbn_M Ribosomal protein S13; 35.6 3.2 0.00011 28.9 -2.0 21 71-91 60-80 (145)
142 2kz3_A Putative uncharacterize 35.5 77 0.0026 19.5 4.9 36 28-66 24-59 (83)
143 1im4_A DBH; DNA polymerase PAL 34.6 21 0.00072 25.7 2.2 21 75-95 186-206 (221)
144 2i5h_A Hypothetical protein AF 34.6 27 0.00094 25.5 2.8 49 37-89 128-185 (205)
145 2q0z_X Protein Pro2281; SEC63, 33.0 70 0.0024 24.2 5.1 35 29-66 182-216 (339)
146 3rfa_A Ribosomal RNA large sub 30.2 42 0.0014 26.6 3.5 44 33-79 18-64 (404)
147 4glx_A DNA ligase; inhibitor, 30.2 43 0.0015 28.0 3.6 41 22-65 525-565 (586)
148 2do1_A Nuclear protein HCC-1; 29.4 61 0.0021 18.5 3.2 39 32-70 7-47 (55)
149 2dkz_A Hypothetical protein LO 29.2 17 0.00057 22.9 0.8 62 31-95 11-78 (84)
150 4f92_B U5 small nuclear ribonu 28.8 71 0.0024 30.0 5.1 48 47-95 1529-1579(1724)
151 3tl4_X Glutaminyl-tRNA synthet 28.7 1.6E+02 0.0053 20.9 6.2 55 39-94 3-60 (187)
152 4dez_A POL IV 1, DNA polymeras 28.1 30 0.001 26.4 2.2 45 49-95 141-200 (356)
153 2p6r_A Afuhel308 helicase; pro 27.5 38 0.0013 28.0 2.8 30 61-90 617-649 (702)
154 1s69_A Cyanoglobin, hemoglobin 27.3 1.1E+02 0.0036 19.4 4.6 33 1-34 1-33 (124)
155 3osn_A DNA polymerase IOTA; ho 26.9 30 0.001 27.3 2.1 20 75-94 236-255 (420)
156 2g3q_A Protein YBL047C; endocy 26.5 60 0.0021 16.9 2.7 16 45-60 9-24 (43)
157 1jx4_A DNA polymerase IV (fami 26.3 28 0.00095 26.6 1.7 22 74-95 179-200 (352)
158 1ni7_A ER75, hypothetical prot 26.0 1.6E+02 0.0055 20.1 5.6 44 29-75 101-148 (155)
159 1pzn_A RAD51, DNA repair and r 25.7 1.1E+02 0.0037 23.2 5.0 38 28-68 55-92 (349)
160 1zrj_A E1B-55KDA-associated pr 24.6 51 0.0018 18.5 2.2 36 32-67 7-44 (50)
161 1h1j_S THO1 protein; SAP domai 24.0 99 0.0034 17.3 3.4 36 34-69 4-41 (51)
162 1t94_A Polymerase (DNA directe 23.6 40 0.0014 26.8 2.2 19 75-93 284-302 (459)
163 2zix_A Crossover junction endo 22.7 8.1 0.00028 29.2 -2.0 19 72-90 232-250 (307)
164 1wlo_A SUFE protein; structura 22.5 33 0.0011 23.1 1.3 43 30-76 89-135 (136)
165 2lpe_A Kinase suppressor of RA 22.4 1.1E+02 0.0038 21.1 4.0 28 27-54 104-131 (149)
166 3bq0_A POL IV, DBH, DNA polyme 22.0 37 0.0013 25.8 1.7 20 75-94 181-200 (354)
167 2pjp_A Selenocysteine-specific 21.9 53 0.0018 21.0 2.2 64 28-92 19-103 (121)
168 3pzp_A DNA polymerase kappa; D 21.5 44 0.0015 27.3 2.1 19 75-93 340-358 (517)
169 2aq4_A DNA repair protein REV1 21.5 44 0.0015 26.4 2.1 17 75-91 243-259 (434)
170 1gm5_A RECG; helicase, replica 21.3 37 0.0013 29.1 1.7 18 74-91 116-133 (780)
171 2va8_A SSO2462, SKI2-type heli 21.0 1.8E+02 0.0063 23.8 5.8 29 28-62 677-705 (715)
172 1bgx_T TAQ DNA polymerase; DNA 20.3 14 0.00047 32.2 -1.2 24 72-96 190-213 (832)
No 1
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=100.00 E-value=2.9e-35 Score=212.89 Aligned_cols=114 Identities=33% Similarity=0.650 Sum_probs=106.1
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCC
Q 033363 5 YSIRLKEI----AILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHG 80 (121)
Q Consensus 5 ~si~~~~~----~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpG 80 (121)
|.+.+++| |++++|++++.+|+++||||++|+++++++|+++|+++|||++||++|+++|+.++.+++++|++|||
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpG 111 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHG 111 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTT
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCC
Confidence 45555555 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHHhh
Q 033363 81 VGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVSTK 118 (121)
Q Consensus 81 IG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~~~ 118 (121)
||+||||++++||+|++..|+|+|+++++|++|+++..
T Consensus 112 VG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~~ 149 (161)
T 4e9f_A 112 IGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENH 149 (161)
T ss_dssp CCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcCc
Confidence 99999999999999987779999999999999998764
No 2
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.95 E-value=5e-27 Score=177.13 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHHHhccC
Q 033363 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWTHVTQL 78 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~~L~~l 78 (121)
+..++++++.++|++++.+|++.||||++|+++++++|+++|+++||+++||++|+++|+.+.+ +++++|++|
T Consensus 39 ~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~l 118 (226)
T 1orn_A 39 AVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKL 118 (226)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHC
Confidence 3344444556789999999999999999999999999999999999999999999999999987 378999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHH
Q 033363 79 HGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114 (121)
Q Consensus 79 pGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl 114 (121)
||||+|||++|++|++|++ ++|+|.++.|...++
T Consensus 119 pGIG~~TA~~il~~a~g~~--~~~vD~~v~Rv~~rl 152 (226)
T 1orn_A 119 PGVGRKTANVVVSVAFGVP--AIAVDTHVERVSKRL 152 (226)
T ss_dssp TTCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHCCCc--eeeeCHHHHHHHHHh
Confidence 9999999999999999996 778887777766554
No 3
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.94 E-value=6.1e-27 Score=175.96 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHHHhccCC
Q 033363 7 IRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWTHVTQLH 79 (121)
Q Consensus 7 i~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~~L~~lp 79 (121)
..++++++.++|++++.+|++.||||++|+++++++|+++|+++||+++||++|+++|+.+.+ +++++|++||
T Consensus 42 ~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lp 121 (221)
T 1kea_A 42 EILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLP 121 (221)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTST
T ss_pred HHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCC
Confidence 334444456789999999999999999999999999999999999999999999999999987 3689999999
Q ss_pred CCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 80 GVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 80 GIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
|||+|||++|++|++|++ ++|+|.+++|....+++
T Consensus 122 GIG~~TA~~il~~~~~~~--~~~vD~~v~Rv~~rl~g 156 (221)
T 1kea_A 122 GVGKYTCAAVMCLAFGKK--AAMVDANFVRVINRYFG 156 (221)
T ss_dssp TCCHHHHHHHHHHTTCCC--CCCCCHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCC--cceecHHHHHHHHHHhC
Confidence 999999999999999996 68889888888777643
No 4
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.94 E-value=3.9e-27 Score=175.77 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHHHhccC
Q 033363 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWTHVTQL 78 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~~L~~l 78 (121)
+..++++++.++|++++.+|++.||||++|+++++++|+++|+++||+++||++|+++|+.+.+ +++++|++|
T Consensus 35 ~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l 114 (211)
T 2abk_A 35 AVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEAL 114 (211)
T ss_dssp HHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhC
Confidence 3334444556789999999999999999999999999999999999999999999999999987 368999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHH
Q 033363 79 HGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114 (121)
Q Consensus 79 pGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl 114 (121)
||||+|||++|++|++|++ ++|+|.+++|...++
T Consensus 115 ~GIG~~tA~~il~~~~~~~--~~~vD~~v~Rv~~rl 148 (211)
T 2abk_A 115 PGVGRKTANVVLNTAFGWP--TIAVDTHIFRVCNRT 148 (211)
T ss_dssp TTCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCC--cCCcCHHHHHHHHHh
Confidence 9999999999999999997 788888887776655
No 5
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.94 E-value=2.3e-26 Score=173.13 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHHHhccCCC
Q 033363 8 RLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWTHVTQLHG 80 (121)
Q Consensus 8 ~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~~L~~lpG 80 (121)
.++++++.++|.+++.+|++.||||++|+++++++|+++|+++||+ +||++|+++|+.+.+ +++++|++|||
T Consensus 38 IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpG 116 (225)
T 1kg2_A 38 VMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGGKFPETFEEVAALPG 116 (225)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTT
T ss_pred HHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCC
Confidence 3333445678999999999999999999999999999999999999 699999999999987 36899999999
Q ss_pred CcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 81 VGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 81 IG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
||+|||++|++|++|++ .+|+|.+++|..+.+..
T Consensus 117 IG~~TA~~il~~a~~~~--~~~vD~~v~Rv~~rl~~ 150 (225)
T 1kg2_A 117 VGRSTAGAILSLSLGKH--FPILDGNVKRVLARCYA 150 (225)
T ss_dssp CCHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCC--cceeCHHHHHHHHHHcC
Confidence 99999999999999998 46899999998887754
No 6
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.93 E-value=4.3e-26 Score=171.20 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCC------HHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH--------
Q 033363 5 YSIRLKEIAILLKAGRVISDLFTL-CPD------AKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------- 69 (121)
Q Consensus 5 ~si~~~~~~~~~~v~~v~~~l~~~-~pt------~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------- 69 (121)
.+..++++++.+++++++.+|+++ ||| |++|+++++++|+++|+++||+++||++|+++|+.+.+
T Consensus 35 v~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l~~~ 114 (218)
T 1pu6_A 35 LGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENF 114 (218)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCChhhc
Confidence 344444555667899999999999 999 99999999999999999999999999999999999986
Q ss_pred ---hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHH
Q 033363 70 ---ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEF 113 (121)
Q Consensus 70 ---~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~w 113 (121)
+.+++|++|||||||||++|++|++|++ ++|+|.+++|....
T Consensus 115 ~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~--~~~vD~~v~Ri~~r 159 (218)
T 1pu6_A 115 KQEVTREWLLDQKGIGKESADAILCYACAKE--VMVVDKYSYLFLKK 159 (218)
T ss_dssp HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS--CCCCCHHHHHHHHH
T ss_pred cchHHHHHHHcCCCcCHHHHHHHHHHHCCCC--ccccCHHHHHHHHH
Confidence 2578999999999999999999999996 78888887776544
No 7
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=174.78 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHHHhcc-CC
Q 033363 8 RLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWTHVTQ-LH 79 (121)
Q Consensus 8 ~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~~L~~-lp 79 (121)
.++++++.++|.+++.+|+++||||++|+++++++|+++|+++||++ ||++|+++|+.+.+ .++++|++ ||
T Consensus 57 ILsQQts~~~v~~~~~rL~~~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~Lp 135 (287)
T 3n5n_X 57 VMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGGHMPRTAETLQQLLP 135 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHST
T ss_pred HHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcC
Confidence 33344456789999999999999999999999999999999999996 99999999999998 37899999 99
Q ss_pred CCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHH
Q 033363 80 GVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLV 115 (121)
Q Consensus 80 GIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~ 115 (121)
|||+|||++|++|++|++ ++|+|.+++|....+.
T Consensus 136 GIG~kTA~~iL~~a~g~p--~~~VDt~V~Rv~~Rlg 169 (287)
T 3n5n_X 136 GVGRYTAGAIASIAFGQA--TGVVDGNVARVLCRVR 169 (287)
T ss_dssp TCCHHHHHHHHHHHSCCC--CCCCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCC--CccccHHHHHHHHHhC
Confidence 999999999999999997 6789999988877664
No 8
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.93 E-value=2.3e-25 Score=168.88 Aligned_cols=109 Identities=20% Similarity=0.324 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH--------
Q 033363 4 IYSIRLKEIAILLKAGRVISDLFTL------CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------- 69 (121)
Q Consensus 4 ~~si~~~~~~~~~~v~~v~~~l~~~------~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------- 69 (121)
+.+..++|+++.+++++++.+|.+. ||||++|+++++++ |+++||+++|+++|+++|+.+.+
T Consensus 64 Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~----Lr~~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~ 139 (232)
T 4b21_A 64 IIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVET----LHECGFSKLKSQEIHIVAEAALNKQIPSKSE 139 (232)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHH----HHTTTCCHHHHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHH----HHHcCCcHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3344444555567899999999988 99999999999998 68899999999999999999986
Q ss_pred -------hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcc-hHHHHHHHHHHHHh
Q 033363 70 -------ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPT-DHMLNYYWEFLVST 117 (121)
Q Consensus 70 -------~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~-D~~l~~~~~wl~~~ 117 (121)
+.+++|++|||||||||++|++|++|+|| ++|. |.++++..++++..
T Consensus 140 l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd-~fpv~D~~v~r~~~rl~~~ 194 (232)
T 4b21_A 140 IEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLD-IMPADDSTLKNEAKEFFGL 194 (232)
T ss_dssp HHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSS-CCCTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCC-eeeCccHHHHHHHHHHhCC
Confidence 25789999999999999999999999997 6555 99999999887653
No 9
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.92 E-value=3.8e-25 Score=167.49 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-----------
Q 033363 5 YSIRLKEIAILLKAGRVISDLFTL----CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG----------- 69 (121)
Q Consensus 5 ~si~~~~~~~~~~v~~v~~~l~~~----~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~----------- 69 (121)
.+..++|+++.+++.+++.+|+++ ||||++|+++++++ |+++||+++||++|+++|+.+.+
T Consensus 56 v~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~----Lr~~G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~ 131 (233)
T 2h56_A 56 VSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEA----LRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGA 131 (233)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHH----HHHTTCCHHHHHHHHHHHHHHHTTSSCHHHHTTS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHH----HHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHhcC
Confidence 344444555567889999999987 47999999999998 48999999999999999999875
Q ss_pred ---hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 70 ---ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 70 ---~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
+.+++|++|||||||||++|++|++|+||.++++|+++|+..+|.+.
T Consensus 132 p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~ 181 (233)
T 2h56_A 132 EATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYG 181 (233)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhcc
Confidence 35788999999999999999999999998566678999999888764
No 10
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.92 E-value=4e-25 Score=166.71 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh-----------
Q 033363 4 IYSIRLKEIAILLKAGRVISDLFTLC--PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGE----------- 70 (121)
Q Consensus 4 ~~si~~~~~~~~~~v~~v~~~l~~~~--pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~----------- 70 (121)
+.+..++|+++.+++.+++.+|.+.| |||++|+++++++ |+++||+++|+++|+++|+.+.++
T Consensus 65 Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~----Lr~~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~ 140 (225)
T 2yg9_A 65 LVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDD----LRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQP 140 (225)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHH----HHHTTCCHHHHHHHHHHHHHHHTTSSCGGGCTTSC
T ss_pred HHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHH----HHHCCCcHHHHHHHHHHHHHHHhCCcCHHHHhcCC
Confidence 44555555566678999999999999 9999999999998 589999999999999999999762
Q ss_pred ---hHHHhccCCCCcHHHHHHHHHHhcCCCCccCcc-hHHHHHHHHHH
Q 033363 71 ---SWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPT-DHMLNYYWEFL 114 (121)
Q Consensus 71 ---~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~-D~~l~~~~~wl 114 (121)
.+++|++|||||+|||++|++|++|++| +||. |+++++..+++
T Consensus 141 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d-~fpv~D~~v~r~~~~l 187 (225)
T 2yg9_A 141 DELVIAELVQLPGIGRWTAEMFLLFALARPD-VFSSGDLALRQGVERL 187 (225)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHTSCCSC-CCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCCC-eeeCccHHHHHHHHHh
Confidence 3789999999999999999999999997 5555 99999988765
No 11
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.9e-25 Score=165.76 Aligned_cols=107 Identities=14% Similarity=0.270 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh---------
Q 033363 6 SIRLKEIAILLKAGRVISDLFTL------CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGE--------- 70 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~~------~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~--------- 70 (121)
+..++|+++.+++.+++.+| +. ||||++|+++++++ |+++||+++|+++|+++|+.+.++
T Consensus 56 ~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~----Lr~~G~~~rKa~~i~~~A~~~~~g~~p~~~~l~ 130 (228)
T 3s6i_A 56 RAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEI----MRACGFSARKIDSLKSIAEATISGLIPTKEEAE 130 (228)
T ss_dssp HHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHH----HHHHTCCHHHHHHHHHHHHHHHHTSSCCHHHHT
T ss_pred HHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHH----HHHcCCCHHHHHHHHHHHHHHHcCCCCChHHHh
Confidence 33444445567889999999 66 49999999999998 589999999999999999999862
Q ss_pred ------hHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHHh
Q 033363 71 ------SWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVST 117 (121)
Q Consensus 71 ------~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~~ 117 (121)
.+++|++|||||+|||++|++|++|++|.++++|+++++.+++++..
T Consensus 131 ~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~ 183 (228)
T 3s6i_A 131 RLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRL 183 (228)
T ss_dssp TSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCC
Confidence 37899999999999999999999999985566689999999888654
No 12
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.92 E-value=8.6e-25 Score=174.32 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=96.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-------hhHH
Q 033363 5 YSIRLKEI----AILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-------ESWT 73 (121)
Q Consensus 5 ~si~~~~~----~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-------~~~~ 73 (121)
|.+.+++| ++.++|.+++.+|+++||||++|+++++++|+++|+++||++ ||++|+++|+.+.+ ++++
T Consensus 40 ~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g~~p~~~~ 118 (369)
T 3fsp_A 40 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGGKVPDDPD 118 (369)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCCCChhHHH
Confidence 44444444 446789999999999999999999999999999999999997 99999999999997 3799
Q ss_pred HhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 74 HVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 74 ~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
+|++|||||+|||++|++|++|++ ++|+|.+++|....+..
T Consensus 119 ~L~~l~GIG~~tA~~il~~~~~~~--~~~vD~~v~Rv~~rl~~ 159 (369)
T 3fsp_A 119 EFSRLKGVGPYTVGAVLSLAYGVP--EPAVDGNVMRVLSRLFL 159 (369)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHTT
T ss_pred HHhcCCCcCHHHHHHHHHHHCCCC--cccccHHHHHHHHHHcC
Confidence 999999999999999999999997 78999999888777643
No 13
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.90 E-value=6.6e-24 Score=164.22 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 033363 4 IYSIRLKEIAILLKAGRVISDLF-------------TLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGE 70 (121)
Q Consensus 4 ~~si~~~~~~~~~~v~~v~~~l~-------------~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~ 70 (121)
+.+..++|+++.+++.+++.+|. ..||||++|+++++++ |+++||+++|+++|+++|+.+.++
T Consensus 117 lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~----Lr~~G~~~~ra~~i~~~A~~~~~~ 192 (282)
T 1mpg_A 117 GVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQA----LKALGMPLKRAEALIHLANAALEG 192 (282)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHH----HHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHH----HHHcCCCHHHHHHHHHHHHHHHcC
Confidence 33444455555678889999996 4589999999999998 589999999999999999999873
Q ss_pred ------------hHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHH
Q 033363 71 ------------SWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYW 111 (121)
Q Consensus 71 ------------~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~ 111 (121)
.+++|++|||||||||++|++|++|++|.++++|+++++.+
T Consensus 193 ~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r~~l 245 (282)
T 1mpg_A 193 TLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF 245 (282)
T ss_dssp CSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHS
T ss_pred CCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHHHHh
Confidence 48999999999999999999999999986667899988654
No 14
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.88 E-value=6e-23 Score=159.90 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHH----
Q 033363 5 YSIRLKEIAILLKAGRVISDLFTL--------------CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQE---- 66 (121)
Q Consensus 5 ~si~~~~~~~~~~v~~v~~~l~~~--------------~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~---- 66 (121)
.+..++|+++.+++.+++.+|.++ ||||++|+++++++ |+++||+++|+++|+++|+.
T Consensus 123 v~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~----Lr~~G~~~rKa~~i~~~A~~g~l~ 198 (295)
T 2jhn_A 123 AKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEG----LRECGLSRRKAELIVEIAKEENLE 198 (295)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHH----HHHTTCCHHHHHHHHHHHTCSSGG
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHH----HHHcCCCHHHHHHHHHHHHCCCHh
Confidence 344444445566888999999887 89999999999988 58999999999999999987
Q ss_pred -HH----HhhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 67 -YL----GESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 67 -i~----~~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
+. ++.+++|++|||||||||++|++|++| +|.++++|+++++..+++++
T Consensus 199 ~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g 252 (295)
T 2jhn_A 199 ELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYF 252 (295)
T ss_dssp GGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHS
T ss_pred hhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhc
Confidence 11 135899999999999999999999999 98556668999998887754
No 15
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.88 E-value=4.1e-22 Score=155.10 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 4 IYSIRLKEIAILLKAGRVISDLFTL--------------CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 4 ~~si~~~~~~~~~~v~~v~~~l~~~--------------~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
+.+..++++++.+++.+++.+|.++ ||||++|+++++++|.+ +|++ .||++|+++|+.+.+
T Consensus 119 Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~----~g~g-~Ra~~I~~~A~~i~~ 193 (290)
T 3i0w_A 119 LLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE----CTAG-FRAKYLKDTVDRIYN 193 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH----TTCG-GGHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH----cCCc-hHHHHHHHHHHHHHh
Confidence 3444455555567888999999764 89999999999999654 6776 499999999999986
Q ss_pred --------------hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHHH
Q 033363 70 --------------ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLVS 116 (121)
Q Consensus 70 --------------~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~~ 116 (121)
+.+++|++|||||||||++|++|++|+|| ++|+|.++++..+++..
T Consensus 194 g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd-~fpvD~~v~r~~~rl~~ 253 (290)
T 3i0w_A 194 GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYS-AFPVDTWVKKAMMSLYV 253 (290)
T ss_dssp TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTT-CCCCCHHHHHHHHHHTS
T ss_pred CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCC-cceecHHHHHHHHHhcC
Confidence 25789999999999999999999999997 77779999998887653
No 16
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.86 E-value=3.2e-22 Score=150.61 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcC--ChhHHHHHHHHHHHHH---HH-------hhHHHhc-
Q 033363 10 KEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLG--LQKKRAPMIKRFSQEY---LG-------ESWTHVT- 76 (121)
Q Consensus 10 ~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~G--l~~~Ka~~i~~~a~~i---~~-------~~~~~L~- 76 (121)
+++++++++++++.+| |+.++++++++|+++|+++| |+++||++|+++|+.+ .+ +.+++|+
T Consensus 60 sqqts~~~~~~a~~~L------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~ 133 (219)
T 3n0u_A 60 TANWSAEGGIRAQKEI------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVR 133 (219)
T ss_dssp TTTSCHHHHHHHHHHH------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 3445567889999999 68899999999999999999 9999999999999975 22 5789999
Q ss_pred cCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHH
Q 033363 77 QLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114 (121)
Q Consensus 77 ~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl 114 (121)
++||||||||++||+| ++.++ ++|+|.++.|....+
T Consensus 134 ~l~GVG~kTA~~vL~~-~g~~~-~~~VDthv~Ri~~rl 169 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRN-TGVED-LAILDKHVLRLMKRH 169 (219)
T ss_dssp HSTTCCHHHHHHHHHT-TTCCS-CCCCCHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHH-cCCCC-eeeecHHHHHHHHHc
Confidence 9999999999999999 88754 788888887765443
No 17
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.86 E-value=7.1e-22 Score=148.29 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcC--ChhHHHHHHHHHHH--HHHH---------hhH
Q 033363 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLG--LQKKRAPMIKRFSQ--EYLG---------ESW 72 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~G--l~~~Ka~~i~~~a~--~i~~---------~~~ 72 (121)
+..+++++++++|++++.+|+ +.++++++++|+++|+++| |+++||++|+++|+ .+.+ .++
T Consensus 50 ~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~r 123 (214)
T 3fhf_A 50 FCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAR 123 (214)
T ss_dssp HHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHH
Confidence 444445566778899999996 7899999999999999999 99999999999999 5443 368
Q ss_pred HHhc-cCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHH
Q 033363 73 THVT-QLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114 (121)
Q Consensus 73 ~~L~-~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl 114 (121)
++|+ +|||||||||++||+++ +.+ .++++|.++.|....+
T Consensus 124 e~Ll~~LpGVG~KTA~~vL~~~-g~~-~~~vVDthv~Ri~~Rl 164 (214)
T 3fhf_A 124 EFLVRNIKGIGYKEASHFLRNV-GYD-DVAIIDRHILRELYEN 164 (214)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHT-TCC-SCCCCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHc-CCC-CcccCcHHHHHHHHHc
Confidence 8999 99999999999999998 664 4666998888775543
No 18
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.86 E-value=1e-21 Score=146.27 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH--------------
Q 033363 6 SIRLKEIAILLKAGRVISDLFTLCPDAKTATEVDAEEIEKIISTLG--LQKKRAPMIKRFSQEYLG-------------- 69 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~G--l~~~Ka~~i~~~a~~i~~-------------- 69 (121)
+..++++++.++|++++.+| |++++++++++|+++|+++| |+++||++|+++|+.+.+
T Consensus 39 ~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~ 112 (207)
T 3fhg_A 39 LCLLTANSSFISAYQALNCL------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQ 112 (207)
T ss_dssp HHHHHTTSCHHHHHHHHHHH------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCH
T ss_pred HHHHcCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCH
Confidence 33344445567888999998 58999999999999999887 999999999999994422
Q ss_pred -hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHH
Q 033363 70 -ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFL 114 (121)
Q Consensus 70 -~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl 114 (121)
+.+++|++|||||||||++|++|+ +.++ ++|+|.+++|....+
T Consensus 113 ~~~~~~L~~lpGIG~kTA~~il~~~-~~~~-~~~vD~~v~Ri~~rl 156 (207)
T 3fhg_A 113 QLARERLLNIKGIGMQEASHFLRNV-GYFD-LAIIDRHIIDFMRRI 156 (207)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHT-TCCS-SCCCCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHh-CCCC-cceecHHHHHHHHHc
Confidence 468999999999999999999983 3344 899999888877654
No 19
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.86 E-value=1.6e-21 Score=155.89 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-
Q 033363 6 SIRLKEIAILLKAGRVISDLFT---------------LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG- 69 (121)
Q Consensus 6 si~~~~~~~~~~v~~v~~~l~~---------------~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~- 69 (121)
+..++++++.+++.+++.+|.+ .||||++|++++.++ .|+++|| .+||++|+++|+.+.+
T Consensus 158 ~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee---~Lr~~Gl-~~RA~~I~~~A~~i~~~ 233 (360)
T 2xhi_A 158 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA---HLRKLGL-GYRARYVSASARAILEE 233 (360)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH---HHHHTTC-TTHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH---HHHHcCC-cHHHHHHHHHHHHHHhc
Confidence 4444444556678899999987 589999999997543 4889999 4899999999999865
Q ss_pred ----------------hhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchHHHHHHHHHHH
Q 033363 70 ----------------ESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDHMLNYYWEFLV 115 (121)
Q Consensus 70 ----------------~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~~l~~~~~wl~ 115 (121)
+.+++|++|||||||||++|++|++|+|| ++|+|.+++|....++
T Consensus 234 ~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd-~fpvDthV~Ri~~r~~ 294 (360)
T 2xhi_A 234 QGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQ-AVPVNVHMWHIAQRDY 294 (360)
T ss_dssp TCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTT-CCCCSHHHHHHHHHHH
T ss_pred cCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC-EEEecHHHHHHHHHHh
Confidence 35789999999999999999999999997 8888999988876543
No 20
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.31 E-value=0.011 Score=43.78 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHHH-HHhhcCChhHHHHHHHHH------HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcCC
Q 033363 41 EEIEK-IISTLGLQKKRAPMIKRF------SQEYLGESWTHVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 41 ~eL~~-~i~~~Gl~~~Ka~~i~~~------a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
.++.+ +++--|.....|..|.+. .+.+.+++.+.|.++||||+|||+-+..---++
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 34444 334456667788888764 555777899999999999999999987655454
No 21
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=96.22 E-value=0.0033 Score=51.67 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---------------------------------
Q 033363 23 SDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG--------------------------------- 69 (121)
Q Consensus 23 ~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~--------------------------------- 69 (121)
..|.++|.+..++..+|.+| ++.+||+..|...|+.+-+.+.+
T Consensus 532 ~elkr~ygs~savr~~pv~e----lrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g 607 (685)
T 4gfj_A 532 DELKRKYGSASAVRRLPVEE----LRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELG 607 (685)
T ss_dssp HHHHHHSSCHHHHHHSCHHH----HHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSC
T ss_pred HHHHHhhccHHHHHhccHHH----HHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccC
Confidence 46788999999999999999 78899999999999877666554
Q ss_pred -----------hhHHHhccCCCCcHHHHHHHH
Q 033363 70 -----------ESWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 70 -----------~~~~~L~~lpGIG~~tA~~vl 90 (121)
..++.|+.+.||||+.|+-++
T Consensus 608 ~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 608 ATPKAAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp CGGGC---------------------------
T ss_pred CCHHHHHHhcChhHHHhhcccCCCHHHHHHHH
Confidence 157889999999999998765
No 22
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.98 E-value=0.021 Score=41.50 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=38.1
Q ss_pred HhhcCChhHHHHHHHHH------HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcCC
Q 033363 47 ISTLGLQKKRAPMIKRF------SQEYLGESWTHVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~------a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
++--|....+|+.|.+. .+.+.+.+.++|.++||||+|||+-+...--++
T Consensus 75 ~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 75 LSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred hcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 34456667788877754 445667899999999999999999997655454
No 23
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.87 E-value=0.02 Score=36.18 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHH---HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcCC
Q 033363 51 GLQKKRAPMIKRF---SQEYLGESWTHVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 51 Gl~~~Ka~~i~~~---a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
|.....++.|.+- .+.+.+.+.++|.++||||+++|..+..+--+.
T Consensus 26 gIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 26 SVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp SCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3333455555443 234445678899999999999999998876543
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.85 E-value=0.024 Score=34.14 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHH---HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 51 GLQKKRAPMIKRF---SQEYLGESWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 51 Gl~~~Ka~~i~~~---a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
|.....|+.|.+- ...+.+.+.++|.++||||+++|..+..+.-.
T Consensus 21 giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 21 HVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp TCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 3344456655543 23344457889999999999999998876543
No 25
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.81 E-value=0.013 Score=36.23 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHH---HHHHHHhhHHHhccCCCCcHHHHHHHHHH
Q 033363 52 LQKKRAPMIKRF---SQEYLGESWTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 52 l~~~Ka~~i~~~---a~~i~~~~~~~L~~lpGIG~~tA~~vl~f 92 (121)
....+++.|.+- .+.+.+.+.++|.++||||+++|..+..+
T Consensus 32 IG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 32 VGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 333456666553 23444567889999999999999988764
No 26
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=95.66 E-value=0.032 Score=43.66 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHH-----hhHHHhccCCCCcHHHHHHHHHHh
Q 033363 40 AEEIEKIISTLGLQKKRAPMIKRFSQEYLG-----ESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 40 ~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-----~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
.++|..++.-.|=...|++.-.++|..+.. .+.++|.+|||||+++|+.|.-+.
T Consensus 19 L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l 77 (335)
T 2fmp_A 19 LTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFL 77 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHH
Confidence 456666666566667899999999999876 467789999999999999998764
No 27
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.47 E-value=0.021 Score=36.27 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHH---HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 51 GLQKKRAPMIKRF---SQEYLGESWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 51 Gl~~~Ka~~i~~~---a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
|.....++.|.+- .+.+.+.+.++|.++||||+++|..+..+.-+
T Consensus 39 gIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 39 SVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp TCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 4444455555543 23344457889999999999999999876543
No 28
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=95.34 E-value=0.044 Score=46.13 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=46.9
Q ss_pred HHHHHHHHhC--CCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH----------------------------
Q 033363 20 RVISDLFTLC--PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG---------------------------- 69 (121)
Q Consensus 20 ~v~~~l~~~~--pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~---------------------------- 69 (121)
..+..|++.. .++.++..++.++|.++ =||...++..|.+.-+...+
T Consensus 457 ~~i~~L~~~g~i~~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~ 533 (586)
T 4glx_A 457 KIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG 533 (586)
T ss_dssp HHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcC
Confidence 4455565542 57777877777774332 26666666666554332221
Q ss_pred -------hhHHHhccCCCCcHHHHHHHHHHh
Q 033363 70 -------ESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 70 -------~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
.+.++|.+++|||+.+|+.+..|-
T Consensus 534 sl~~l~~a~~e~l~~i~giG~~~A~si~~ff 564 (586)
T 4glx_A 534 TLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (586)
T ss_dssp SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CHHHHHccCHHHHhcCCCccHHHHHHHHHHH
Confidence 256899999999999999998764
No 29
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.34 E-value=0.027 Score=41.32 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=34.6
Q ss_pred hhcCChhHHHHHHHHH------HHHHHHhhHHHhccCCCCcHHHHHHHHHHh
Q 033363 48 STLGLQKKRAPMIKRF------SQEYLGESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 48 ~~~Gl~~~Ka~~i~~~------a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+--|....+|..|.+. .+.|.+.+.++|.++||||+|||+-+...-
T Consensus 77 ~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 3346666677777652 445667899999999999999999987644
No 30
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=95.30 E-value=0.033 Score=44.03 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHH-----hhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 40 AEEIEKIISTLGLQKKRAPMIKRFSQEYLG-----ESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 40 ~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-----~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
.++|.+++.--| ...|++.-.++|..+.. .+.++|.+|||||+++|+.|.-+.-
T Consensus 24 L~~ia~~~e~~g-~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 24 LETLAEAAGFEA-NEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 355666666667 67899999999999876 3566799999999999999987643
No 31
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=95.02 E-value=0.06 Score=42.16 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=31.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHH-----hhHHHhccCCCCcHHHHHHHHHH
Q 033363 42 EIEKIISTLGLQKKRAPMIKRFSQEYLG-----ESWTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 42 eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-----~~~~~L~~lpGIG~~tA~~vl~f 92 (121)
+|..++.-.|=. .|++.-.++|..+.. .+.++|.+|||||+++|+.|.-+
T Consensus 22 ~ia~~~e~~g~~-~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 22 VLAKAYSVQGDK-WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCcc-HhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHH
Confidence 344444444443 677777777777665 35556777777777777777655
No 32
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=94.96 E-value=0.044 Score=43.68 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHH-----hhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 40 AEEIEKIISTLGLQKKRAPMIKRFSQEYLG-----ESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 40 ~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-----~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
.++|..++.--| ...|++.-.++|..+.. ...++|.+|||||+.+|+.|.-+.-
T Consensus 43 L~~ia~~~e~~g-~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 43 LDILAENDELRE-NEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 456666666677 67899999999999876 3566799999999999999987643
No 33
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=94.84 E-value=0.025 Score=42.01 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=24.8
Q ss_pred HhhHHHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 69 GESWTHVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 69 ~~~~~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
++.+++|.+|||||||||.=+..+-+.++
T Consensus 22 ~~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 22 AKLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 35678899999999999999998888764
No 34
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=94.82 E-value=0.12 Score=40.40 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCCCcHHHHHHHHHHhcCCCC
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAIFCTGKWD 98 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~~~~ 98 (121)
+...+++.|-+...+.+.+.++++.+...-.++..-.+ ..++-...+|++-.|||+|||+-++ .+||.|.
T Consensus 366 aadeliehfesiagilatdleeiermyeegrlseeayr-------aaveiqlaeltkkegvgrktaerll-rafgnpe 435 (519)
T 2csb_A 366 AADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYR-------AAVEIQLAELTKKEGVGRKTAERLL-RAFGNPE 435 (519)
T ss_dssp HHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHH-------HHHHHHHHHHHTSTTCCHHHHHHHH-HHHSSHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHH-------HHHHHHHHHHhhhcccchhHHHHHH-HHhCCHH
Confidence 34566778888999999999999998877777743222 2223356789999999999999765 6888764
No 35
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.61 E-value=0.072 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHH-HHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKR-APMIKRFS 64 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~K-a~~i~~~a 64 (121)
-...|++.|.|.+.+.+|+.+||.++ +| ... |+.|.+..
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~v---ig--~~~~A~~I~~~l 55 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI---LG--NAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH---HS--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---cC--chHHHHHHHHHH
Confidence 35678899999999999999999887 45 345 88887644
No 36
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=94.49 E-value=0.0029 Score=38.95 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 32 AKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 32 ~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
+-++..++.++|.++ -|+...+|+.|.+.- ...+.++|.++||+|+++++-+.-
T Consensus 18 ~idiN~a~~~~L~~i---pGIG~~~A~~Il~~r---~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 18 PVSLNEASLEELMAL---PGIGPVLARRIVEGR---PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp SEETTTCCHHHHTTS---TTCCHHHHHHHHHTC---CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred ccChhhCCHHHHHhC---CCCCHHHHHHHHHHc---ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 445677777776542 366667777776632 226788999999999999987653
No 37
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=94.46 E-value=0.025 Score=34.60 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.6
Q ss_pred hHHHhccCCCCcHHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f 92 (121)
+.++|.++||||+++|..++.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999999999874
No 38
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=94.26 E-value=0.039 Score=41.33 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=25.0
Q ss_pred HhhHHHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 69 GESWTHVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 69 ~~~~~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
++.+++|.+|||||||||.=+..+-+.++
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 45678999999999999999988888764
No 39
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.17 E-value=0.029 Score=38.83 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---hhHHHhccCCCCcHHHHHHHHH
Q 033363 35 ATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG---ESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 35 la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~---~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|-.|+.+++++ ==|++..||+.|++ . ...++|..+||||+++-+.+--
T Consensus 57 iNtA~~~eL~~---LpGiGp~~A~~II~------~GpF~svedL~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 57 LNNTNIAAFIQ---YRGLYPTLAKLIVK------NAPYESVEDVLNIPGLTERQKQILRE 107 (134)
T ss_dssp TTTSCGGGGGG---STTCTHHHHHHHHH------TCCCSSGGGGGGCTTCCHHHHHHHHH
T ss_pred CcccCHHHHHH---CCCCCHHHHHHHHH------cCCCCCHHHHHhCCCCCHHHHHHHHH
Confidence 45566666443 23888888888871 2 4788999999999988776643
No 40
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.93 E-value=0.12 Score=33.11 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-hhHHHhccCCCCcHHHHHHHHHHh
Q 033363 32 AKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-ESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 32 ~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+-+|..++.++|.. |. |+....|+.|.+.-+.--. .+.++|..+||||+++++.+...+
T Consensus 31 ~i~iN~a~~~~L~~-ip--GIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQ--RIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHH-ST--TCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CC--CCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHHCc
Confidence 45677788887654 34 5556677777765321100 467889999999999999886554
No 41
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.42 E-value=0.047 Score=32.64 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
...|.++||||++....+|. -||
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fg 25 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVK 25 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCS
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcC
Confidence 35789999999999999885 444
No 42
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=92.99 E-value=0.29 Score=41.83 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHhC--CCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHH---------HHHH---------------------
Q 033363 22 ISDLFTLC--PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQ---------EYLG--------------------- 69 (121)
Q Consensus 22 ~~~l~~~~--pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~---------~i~~--------------------- 69 (121)
...|++.. -++.+|..+..++|.++ =||....++.|.+.-+ .+..
T Consensus 459 i~~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl 535 (671)
T 2owo_A 459 IDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTL 535 (671)
T ss_dssp HHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSH
T ss_pred HHHHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCH
Confidence 44455442 47778888877765432 3666666777665522 2221
Q ss_pred -----hhHHHhccCCCCcHHHHHHHHHHh
Q 033363 70 -----ESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 70 -----~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
.+.++|.++||||+++|..+..|-
T Consensus 536 ~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 536 EALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 146789999999999999888764
No 43
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=92.79 E-value=0.14 Score=37.24 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=29.8
Q ss_pred CChhHHHHHHHHHH---HHHHHhhHHHhccCCCCcHHHHHHHHHHh
Q 033363 51 GLQKKRAPMIKRFS---QEYLGESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 51 Gl~~~Ka~~i~~~a---~~i~~~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
|....+|+.|.+-- +.+.+.+.++|.++||||+++|..+..|-
T Consensus 169 gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 169 GIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp TCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 44456677666542 23334577889999999999999887654
No 44
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.56 E-value=0.19 Score=31.85 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFS 64 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a 64 (121)
-...|+..|.|.+.|.+|+.+||.++ +|- ..+|+.|.+..
T Consensus 30 r~~~LL~~FgSl~~i~~AS~eEL~~v---ig~-~~~A~~I~~~l 69 (84)
T 1z00_B 30 NCRSLMHHVKNIAELAALSQDELTSI---LGN-AANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHHSSCHHHHHHSCHHHHHHH---HSC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---hCc-hHHHHHHHHHH
Confidence 45688899999999999999999988 452 23388887654
No 45
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=92.46 E-value=0.013 Score=38.37 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=41.0
Q ss_pred CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH--hhHHHhccCCCCcHHHHHHHHH
Q 033363 29 CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG--ESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 29 ~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~--~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
.+.+-++-.|+.++|+. | -|+...+|+.|.+ .. .++++|.+++|||+++.+-+.-
T Consensus 14 ~~~~vdiNtAs~~eL~~-l--pGIG~~~A~~IV~-----~GpF~s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQ-Y--RGLYPTLAKLIVK-----NAPYESVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp GGTSEETTTSCGGGGGG-S--TTCTTHHHHHHHH-----HCCCSSGGGGGGCTTCCHHHHHHHHH
T ss_pred cCCceeCCcCCHHHHhH-C--CCCCHHHHHHHHH-----cCCCCCHHHHHhccCCCHHHHHHHHH
Confidence 44555677788888654 3 4666678888887 22 4789999999999999888765
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.45 E-value=0.38 Score=37.51 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHH--------HH----HhhHHHhccCCCCcHHHHHHHHH
Q 033363 51 GLQKKRAPMIKRFSQE--------YL----GESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 51 Gl~~~Ka~~i~~~a~~--------i~----~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|....-|+.|.++.+. +. ...+.+|+++|||||+||.-+--
T Consensus 64 GIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~ 116 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116 (335)
T ss_dssp TCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHH
Confidence 4555666666666431 11 13678999999999999997743
No 47
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=92.22 E-value=0.18 Score=32.19 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHH-----hhHHHhccCCCCcHHHHHHHH
Q 033363 56 RAPMIKRFSQEYLG-----ESWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 56 Ka~~i~~~a~~i~~-----~~~~~L~~lpGIG~~tA~~vl 90 (121)
++....++.+.+.. ...+++..|+|||+++++.+-
T Consensus 36 ~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 36 TRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp THHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHH
Confidence 55666677777665 477899999999999998764
No 48
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=92.14 E-value=0.088 Score=36.41 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=18.9
Q ss_pred hHHHhccCCCCcHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl 90 (121)
+.++|.+||||||+.|..|.
T Consensus 61 ~~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH
Confidence 67899999999999999999
No 49
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.01 E-value=0.16 Score=31.03 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHH-hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 033363 24 DLFT-LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQE 66 (121)
Q Consensus 24 ~l~~-~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~ 66 (121)
+|.+ .|-|.++++.++.++|.++ .|++..|+..|+..|+.
T Consensus 22 kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 22 KLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 4443 4789999999999998664 59999999999999886
No 50
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.93 E-value=0.094 Score=33.27 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=19.8
Q ss_pred hHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
....|.+|||||++....+|. -|+
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~-~Fg 39 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMH-HVK 39 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHH-HSS
T ss_pred HHHHHHhCCCCCHHHHHHHHH-HcC
Confidence 456799999999999999885 444
No 51
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=91.87 E-value=0.055 Score=39.92 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=20.2
Q ss_pred hHHHhccCCCCcHHHHHHHHHHh
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+.++|..|||||+++|..|.-+=
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCcCHHHHHHHHHHH
Confidence 56789999999999999998764
No 52
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.34 E-value=0.065 Score=34.99 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=19.4
Q ss_pred hHHHhccCCCCcHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~ 91 (121)
+.++|..|||||++.|..|..
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH
Confidence 568999999999999999997
No 53
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=91.23 E-value=0.17 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.5
Q ss_pred hHHHhccCCCCcHHHHHHHHHHh
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+.++|.++||||+++|+.+..|-
T Consensus 537 s~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 537 SLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CHHHHHhccCcCHHHHHHHHHHH
Confidence 56789999999999999998764
No 54
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.04 E-value=0.34 Score=38.19 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred hHHHhccCCCCcHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~ 91 (121)
.+.+|+++|||||+||..+--
T Consensus 100 ~l~~l~~I~GvG~kta~~l~~ 120 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRWYQ 120 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHH
Confidence 567899999999999997743
No 55
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=90.92 E-value=0.15 Score=32.76 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.9
Q ss_pred hhHHHhccCCCCcHHHHHHHHHHh
Q 033363 70 ESWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 70 ~~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
.+.++|.++||||+++|..++-+-
T Consensus 37 a~~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 37 GSARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHH
Confidence 367789999999999999999864
No 56
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=90.78 E-value=0.16 Score=36.84 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHhccCCCCcHHHHHHHHHH
Q 033363 72 WTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f 92 (121)
...|.++|||||++|..++..
T Consensus 71 f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHh
Confidence 346899999999999999863
No 57
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=90.55 E-value=0.15 Score=37.58 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.6
Q ss_pred hHHHhccCCCCcHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~ 91 (121)
....|.+++||||++|..++.
T Consensus 86 lf~~L~sv~GIGpk~A~~Ils 106 (212)
T 2ztd_A 86 LFLTLLSVSGVGPRLAMAALA 106 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHhcCcCCcCHHHHHHHHH
Confidence 456799999999999999986
No 58
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=89.88 E-value=0.31 Score=38.99 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 033363 20 RVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYL 68 (121)
Q Consensus 20 ~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~ 68 (121)
.+..+|.+.|.|.+.+.+|+.+||.++ =|....||+.|++....+.
T Consensus 326 ~iae~Lv~~FGsLq~Il~AS~eEL~~V---eGIGe~rAr~IregL~r~~ 371 (377)
T 3c1y_A 326 SIGYNVVRMFKTLDQISKASVEDLKKV---EGIGEKRARAISESISSLK 371 (377)
T ss_dssp HHHHHHHHHHCSHHHHTTCCHHHHTTS---TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhCCHHHHHhc---cCccHHHHHHHHHHHHHHh
Confidence 456788889999999999999997542 4677789999988877664
No 59
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=89.84 E-value=0.62 Score=38.62 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH-----HHHHHH-hhHHHhccCCCCcHHHHHHH
Q 033363 41 EEIEKIISTLGLQKKRAPMIKRF-----SQEYLG-ESWTHVTQLHGVGKYAADAF 89 (121)
Q Consensus 41 ~eL~~~i~~~Gl~~~Ka~~i~~~-----a~~i~~-~~~~~L~~lpGIG~~tA~~v 89 (121)
+.+..+++--|....+|..|..- ...+.. -...+|.++||||+|||.-+
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i 144 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERI 144 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHH
Confidence 34445555556666666665431 111111 01123777777777777766
No 60
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=89.78 E-value=4.3 Score=29.29 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHHHHHhCC--CHHHHhcCCHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHH
Q 033363 21 VISDLFTLCP--DAKTATEVDAEEIEKIISTLGLQ--KKRAPMIKRFSQEYLG 69 (121)
Q Consensus 21 v~~~l~~~~p--t~~~la~a~~~eL~~~i~~~Gl~--~~Ka~~i~~~a~~i~~ 69 (121)
=.+.|.+.|- +|+.++..+++++++++..-|.- +.|.+.+++=|+.+.+
T Consensus 52 KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~ 104 (186)
T 2jg6_A 52 KKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLK 104 (186)
T ss_dssp HHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHH
Confidence 3444555554 79999999999999999998884 4566777777777775
No 61
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=89.28 E-value=0.4 Score=39.84 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH----HHHHHHh-hHHHhccCCCCcHHHHHHH
Q 033363 41 EEIEKIISTLGLQKKRAPMIKRF----SQEYLGE-SWTHVTQLHGVGKYAADAF 89 (121)
Q Consensus 41 ~eL~~~i~~~Gl~~~Ka~~i~~~----a~~i~~~-~~~~L~~lpGIG~~tA~~v 89 (121)
+.+.++++=-|....+|+.|.+. .+.+.+. ....|.++||||+||+.-+
T Consensus 94 ~~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 94 PGLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 34444555556666666666542 0000000 1125666777777777666
No 62
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=88.98 E-value=0.24 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHhccCCCCcHHHHHHHHH
Q 033363 72 WTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~ 91 (121)
...|.++|||||++|..++.
T Consensus 72 f~~L~~V~GIGpk~A~~iL~ 91 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILS 91 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHh
Confidence 34688999999999999986
No 63
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=88.67 E-value=1.4 Score=27.38 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFS 64 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a 64 (121)
...++.+.|.+++++.+++.++|.+ --|+...++..|....
T Consensus 31 ~A~~Ll~~fgsl~~l~~a~~~eL~~---i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 31 DSQTLLTTFGSLEQLIAASREDLAL---CPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHHTCBHHHHHHCCHHHHHT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhCCHHHHHh---CCCCCHHHHHHHHHHH
Confidence 4567778899999999999998644 2477778888887654
No 64
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=88.53 E-value=0.42 Score=38.01 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.0
Q ss_pred hHHHhccCCCCcHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~ 91 (121)
.+.+|+++|||||+||..+--
T Consensus 119 ~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 119 SFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHH
Confidence 567899999999999997743
No 65
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=88.51 E-value=0.086 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred hHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
+.++|.++||||+++|..+..|--.
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~ff~~ 583 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEWFAV 583 (615)
T ss_dssp -------------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999876544
No 66
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=88.20 E-value=0.81 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=29.8
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHH
Q 033363 22 ISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRF 63 (121)
Q Consensus 22 ~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~ 63 (121)
..++.+.|.+++++.+++.++|.++ -|+...++..|...
T Consensus 37 A~~Ll~~fgsl~~l~~a~~eeL~~i---~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKYMGGLQGLRNASVEEIAKV---PGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHSCHHHHHHCCHHHHTTS---SSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHC---CCCCHHHHHHHHHH
Confidence 4567777899999999999996432 36777888888654
No 67
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.13 E-value=1.3 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFS 64 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a 64 (121)
...++...|.+++++.+++.++|.+ --|+...++..|....
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~---i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMK---VEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhc---CCCCCHHHHHHHHHHH
Confidence 4567777889999999999998533 2377778888887654
No 68
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=87.49 E-value=5.7 Score=28.58 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHHHHhCC--CHHHHhcCCHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHH
Q 033363 21 VISDLFTLCP--DAKTATEVDAEEIEKIISTLGLQ--KKRAPMIKRFSQEYLG 69 (121)
Q Consensus 21 v~~~l~~~~p--t~~~la~a~~~eL~~~i~~~Gl~--~~Ka~~i~~~a~~i~~ 69 (121)
=.+.|.+.|- +|+.++..+++++++++..-|.- +.|.+.+++=|+.+.+
T Consensus 52 KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~ 104 (183)
T 2ofk_A 52 KRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLA 104 (183)
T ss_dssp THHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHH
Confidence 3444555554 79999999999999999988884 4577777777887776
No 69
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=87.41 E-value=0.29 Score=38.22 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHHH--H--HH------hhHHHhccCCCCcHHHHHHHH
Q 033363 51 GLQKKRAPMIKRFSQE--Y--LG------ESWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 51 Gl~~~Ka~~i~~~a~~--i--~~------~~~~~L~~lpGIG~~tA~~vl 90 (121)
|.....|+.|.++.+. + ++ ..++.|+++|||||+||.-+-
T Consensus 64 GIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 64 GIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp TCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 5555667776665441 0 00 123444799999999999774
No 70
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=86.67 E-value=1.4 Score=27.50 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFS 64 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a 64 (121)
...++.+.|.+++++.+++.++|.++ -|+...+++.|.+..
T Consensus 44 ~A~~Ll~~fgs~~~l~~as~~eL~~i---~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 44 DSQTLLTTFGSLEQLIAASREDLALC---PGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHSSHHHHHSCCHHHHHTS---SSCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhCCHHHHHhC---CCCCHHHHHHHHHHH
Confidence 35567778999999999999986542 366667888887653
No 71
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=86.65 E-value=0.86 Score=27.77 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred HhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 27 TLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 27 ~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
..|-|.++++-+|.++|.+ --||+..|+.-|++-|+.++.
T Consensus 25 ~Gf~tve~vA~~~~~eL~~---I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 25 EGFSTLEELAYVPMKELLE---IEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp TTCCCHHHHHHSCHHHHTT---STTCCHHHHHHHHHHHHHHHH
T ss_pred cCcCcHHHHHcCCHHHHhh---ccCCCHHHHHHHHHHHHHHHH
Confidence 3589999999999999644 369999999999999987754
No 72
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=85.22 E-value=0.74 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=28.9
Q ss_pred HhhcCChhHHHHHHHHHH-----HHHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFS-----QEYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a-----~~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|..++|+ .|+.+..+-+ ..++..+.++|.+++|+|+++.+-+.-
T Consensus 11 Ie~L~LS-~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 11 IEELDLS-VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp GGGSCCB-HHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 4557887 5554443322 222234788999999999999887654
No 73
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=83.90 E-value=0.58 Score=38.91 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=19.5
Q ss_pred hHHHhccCCCCcHHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f 92 (121)
...+|+++|||||++|..++.-
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCcCHHHHHHHHHc
Confidence 5678999999999999998864
No 74
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=83.53 E-value=1.3 Score=28.16 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=30.6
Q ss_pred HhhcCChhHHHHHHHHHHH-----HHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFSQ-----EYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~-----~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|..++|+ .|+.+..+-+. .++..+.++|.+++|+|+++.+-|.-
T Consensus 14 I~~L~LS-vRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 14 VDDLELT-VRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp GGGGCCC-HHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 4457887 56555444333 23335788999999999999998864
No 75
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=82.45 E-value=0.81 Score=37.79 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 033363 22 ISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEY 67 (121)
Q Consensus 22 ~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i 67 (121)
..+|+++|+|.+.+.+|+++|| +.-|+...|++.|+.+-...
T Consensus 481 AeRLLEkFGSVe~Vm~AteDEL----RedGIGekqarrI~gl~~l~ 522 (685)
T 4gfj_A 481 AERLLKKYGGYSKVREAGVEEL----REDGLTDAQIRELKGLKTLE 522 (685)
T ss_dssp HHHHHHHHTSHHHHHHSCHHHH----HHTTCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcCHHHHHhCCHHHH----HHccccHHHHHHHhhHHHHH
Confidence 4688899999999999999996 44899999999998765443
No 76
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=82.16 E-value=1.3 Score=37.87 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHhC--CCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhh-HHHhc--cCCCCcHHHHHHHHH
Q 033363 21 VISDLFTLC--PDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLGES-WTHVT--QLHGVGKYAADAFAI 91 (121)
Q Consensus 21 v~~~l~~~~--pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~-~~~L~--~lpGIG~~tA~~vl~ 91 (121)
....|++.. -++.+|..+..++|.++ =||...+++.|.+.-+...+.. ...|. .+||||+.+|..++-
T Consensus 453 ~i~~L~~~g~I~~~~DL~~L~~e~L~~l---~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~ 525 (667)
T 1dgs_A 453 LIERLLEKGLVRDVADLYHLRKEDLLGL---ERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLAR 525 (667)
T ss_dssp HHHHHHHTTSCSSGGGGGGGCCHHHHTT---SSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHhcCHHHHhcc---cccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHH
Confidence 344566654 48999999987776543 3787788888877655544434 33343 899999999998764
No 77
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=82.14 E-value=0.27 Score=36.91 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHHHHH-hhH-----HHhccCCCCcHHHHHHHHHH
Q 033363 50 LGLQKKRAPMIKRFSQEYLG-ESW-----THVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 50 ~Gl~~~Ka~~i~~~a~~i~~-~~~-----~~L~~lpGIG~~tA~~vl~f 92 (121)
-|+...+++.|.+. -+.. +.+ ++|.++||||+++|+-+...
T Consensus 21 pGIGpk~a~~Ll~~--gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 21 SGVGPSKAESLREA--GFESVEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp -------------------------------------------------
T ss_pred CCCCHHHHHHHHHc--CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 36666788887765 1211 221 46779999999999988653
No 78
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=80.94 E-value=2.4 Score=30.51 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHH
Q 033363 20 RVISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFS 64 (121)
Q Consensus 20 ~v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a 64 (121)
....++.+.|+|++++.+++.++|.++ -|+...+|+.|.+.-
T Consensus 173 ~~a~~Ll~~fgs~~~l~~a~~e~L~~v---~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 173 RTAERILERFGSLERFFTASKAEISKV---EGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHHHHHHSSHHHHTTCCHHHHHHS---TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHhhC---CCCCHHHHHHHHHHH
Confidence 445678889999999999999997553 477778888887643
No 79
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=80.17 E-value=0.72 Score=30.74 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=28.9
Q ss_pred HHHH-hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 033363 24 DLFT-LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEY 67 (121)
Q Consensus 24 ~l~~-~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i 67 (121)
+|.+ .|-|.++++.+++++|.+ --|++..|+..|++.|+.+
T Consensus 40 kL~eAG~~Tve~va~a~~~eL~~---i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 40 KLEEAGFHTVEAVAYAPKKELIN---IKGISEAKADKILAEAAKL 81 (114)
T ss_dssp HHHTTCCSSGGGBTSSBHHHHHT---TTTCSTTHHHHHHHHHHHH
T ss_pred HHHHcCcCcHHHHHhCCHHHHHH---ccCCCHHHHHHHHHHHHHH
Confidence 4443 377888888888887644 3577778888888877765
No 80
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=80.13 E-value=1.4 Score=27.51 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=30.2
Q ss_pred HhhcCChhHHHHHHHHHHHH-----HHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFSQE-----YLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~~-----i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|..++|+ .|+.+..+-+.+ ++..+.++|++++|+|+++.+-|.-
T Consensus 18 Ie~L~LS-~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 18 IEELDLS-VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp GGGSCCB-HHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 4567887 566554443321 2224778999999999999987753
No 81
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=78.84 E-value=1.4 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
.-.|+.++|||+.+|..++.-+--.|
T Consensus 15 ~~aLt~I~GIG~~~A~~I~~~~gid~ 40 (114)
T 3r8n_M 15 VIALTSIYGVGKTRSKAILAAAGIAE 40 (114)
T ss_dssp HHHGGGSTTCCHHHHHHHHHHTTCCT
T ss_pred HhhHhhhcCcCHHHHHHHHHHcCcCc
Confidence 34799999999999999997655444
No 82
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=78.25 E-value=0.43 Score=35.77 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHh-CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 23 SDLFTL-CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 23 ~~l~~~-~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
..|... |.|.++|.+++.++|.++ -|+...+++.|+.....+..
T Consensus 29 ~~Ll~~gf~sve~L~~a~~~eL~~v---~GIG~ktAe~I~~~l~~~~~ 73 (241)
T 1vq8_Y 29 ESLREAGFESVEDVRGADQSALADV---SGIGNALAARIKADVGGLEV 73 (241)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHcCCCCHHHHHhCCHHHHHhc---cCCCHHHHHHHHHHHHHHHh
Confidence 344444 889999999999987553 47777888888776665544
No 83
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=77.74 E-value=6.9 Score=32.27 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=15.4
Q ss_pred hccCCCCcHHHHHHHHHHhcCC
Q 033363 75 VTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
|++++||||++|..++. .+|-
T Consensus 95 l~~v~GvGpk~A~~~~~-~lg~ 115 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYE-GLGI 115 (575)
T ss_dssp HHTSTTTCHHHHHHHHH-TSCC
T ss_pred HhcCCCcCHHHHHHHHH-hcCC
Confidence 68889999998877753 3443
No 84
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=74.59 E-value=2.1 Score=29.83 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 73 THVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 73 ~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
-.|+.++|||+.+|..++..+-=.+
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~ 54 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDL 54 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCT
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCC
Confidence 4699999999999999997665443
No 85
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=74.52 E-value=0.62 Score=34.65 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHhccCCCCcHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl 90 (121)
+.++|.++ |||+++|..+.
T Consensus 203 s~eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 203 TVEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp --------------------
T ss_pred CHHHHHHc-CCCHHHHHHHH
Confidence 44555555 55555555543
No 86
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=74.24 E-value=4.2 Score=30.06 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHhCCCHHHHhcCCHHHHHHH
Q 033363 24 DLFTLCPDAKTATEVDAEEIEKI 46 (121)
Q Consensus 24 ~l~~~~pt~~~la~a~~~eL~~~ 46 (121)
.|.+.|.|.+.+.+|+.+||.++
T Consensus 183 ~Ll~~FgSl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 183 KLIEHFGSLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHHHCSHHHHHTSCHHHHHHH
T ss_pred HHHHHcCCHHHHHhCCHHHHHHH
Confidence 34455556666666665555444
No 87
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.68 E-value=2.5 Score=29.57 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
.-.|+.++|||+.+|..++.-+-=.|
T Consensus 27 ~~ALt~I~GIG~~~A~~I~~~~gid~ 52 (152)
T 3iz6_M 27 MFALTSIKGVGRRFSNIVCKKADIDM 52 (152)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTCCS
T ss_pred HhhhhhccCcCHHHHHHHHHHcCCCC
Confidence 45799999999999999987665443
No 88
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=72.39 E-value=0.76 Score=38.91 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHh--CCCHHHHhcCCHHHHHHHHhhc----CChhHHHHHHHHHHHHHHHhhHHH---hccCCCCcHHHHHHHHH
Q 033363 21 VISDLFTL--CPDAKTATEVDAEEIEKIISTL----GLQKKRAPMIKRFSQEYLGESWTH---VTQLHGVGKYAADAFAI 91 (121)
Q Consensus 21 v~~~l~~~--~pt~~~la~a~~~eL~~~i~~~----Gl~~~Ka~~i~~~a~~i~~~~~~~---L~~lpGIG~~tA~~vl~ 91 (121)
....|++. .-++.+|..++.++|.++ ... |+...++++|.+.-+.-.+..... =+.+||||+++|..++.
T Consensus 469 ~i~~L~~~g~i~~~aDly~L~~~~L~~l-~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aLGIp~VG~~~ak~La~ 547 (615)
T 3sgi_A 469 AGVALLQAKVIADEGELFALTERDLLRT-DLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALAT 547 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCcCCHHHHhhCCHHHHhhc-cccccccCccchHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34444433 347777777777776553 223 445667777766555443333333 36799999999987653
Q ss_pred HhcCC
Q 033363 92 FCTGK 96 (121)
Q Consensus 92 f~~~~ 96 (121)
.|+.
T Consensus 548 -~Fgs 551 (615)
T 3sgi_A 548 -EFGS 551 (615)
T ss_dssp -----
T ss_pred -HcCC
Confidence 3443
No 89
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=72.32 E-value=4.4 Score=30.88 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=32.3
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhhH---HHhccCCCCcHHHHHHHH
Q 033363 48 STLGLQKKRAPMIKRFSQEYLGESW---THVTQLHGVGKYAADAFA 90 (121)
Q Consensus 48 ~~~Gl~~~Ka~~i~~~a~~i~~~~~---~~L~~lpGIG~~tA~~vl 90 (121)
...|.. . +..+.++++.+..+.| ..|.+|||||+..+..+-
T Consensus 131 ~~~g~~-~-~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 131 SANGYL-N-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHTTBT-T-HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHH
T ss_pred HcCCcH-H-HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHH
Confidence 356766 4 8899999999988544 459999999999887643
No 90
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.12 E-value=2.2 Score=29.70 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
.-.|+.++|||+.+|..++..+-=.+
T Consensus 22 ~~aLt~I~GIG~~~A~~I~~~~gid~ 47 (148)
T 3j20_O 22 RWALTAIKGIGINFATMVCRVAGLDP 47 (148)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHTCCS
T ss_pred hhhhhhccCcCHHHHHHHHHHhCCCC
Confidence 45799999999999999987665444
No 91
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=71.81 E-value=1.1 Score=28.76 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
+.+|.+||+||+.++..+...+..
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~ 26 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIK 26 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCC
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCC
Confidence 357899999999999888765554
No 92
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=71.63 E-value=2.6 Score=29.58 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHhccCCCCcHHHHHHHHHHhc
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
.-.|+.++|||+.+|..++..+-
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTT
T ss_pred EEeeecccccCHHHHHHHHHHcC
Confidence 45799999999999999987654
No 93
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=71.57 E-value=7.4 Score=24.91 Aligned_cols=37 Identities=3% Similarity=0.255 Sum_probs=32.3
Q ss_pred CHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 033363 31 DAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEY 67 (121)
Q Consensus 31 t~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i 67 (121)
|.+.|.++|.+|+.++++..||+..-...|+.+=+.-
T Consensus 36 s~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRg 72 (91)
T 2kz5_A 36 PTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRG 72 (91)
T ss_dssp CHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999988888887765544
No 94
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=71.01 E-value=7.7 Score=24.85 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=33.0
Q ss_pred CHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 31 DAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 31 t~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
|.+.|.++|.+|+.++|+.-||+..-...|+.+=+.-.+
T Consensus 32 s~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KN 70 (92)
T 1skn_P 32 SAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKN 70 (92)
T ss_dssp CHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 889999999999999999999998887777776555433
No 95
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=70.94 E-value=2.3 Score=31.50 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=19.6
Q ss_pred HHhccCCCCcHHHHHHHHHHhcCCC
Q 033363 73 THVTQLHGVGKYAADAFAIFCTGKW 97 (121)
Q Consensus 73 ~~L~~lpGIG~~tA~~vl~f~~~~~ 97 (121)
..|..+||||++++..++. .||-.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~-~FgSl 191 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIE-HFGSL 191 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHH-HHCSH
T ss_pred ccccCCCCcCHHHHHHHHH-HcCCH
Confidence 5699999999999998886 45543
No 96
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=69.75 E-value=1.2 Score=28.67 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.7
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
+.+|.+||+||+.++..+...+..
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~ 26 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIK 26 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCC
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCC
Confidence 457999999999999988766654
No 97
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=69.65 E-value=5.5 Score=31.76 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred hhHHHhccCCCCcHHHHHHHH
Q 033363 70 ESWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 70 ~~~~~L~~lpGIG~~tA~~vl 90 (121)
.+.++|.++.|||++.|..+.
T Consensus 344 AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 344 ASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp CCHHHHTTSTTCCHHHHHHHH
T ss_pred CCHHHHHhccCccHHHHHHHH
Confidence 378999999999999999875
No 98
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=69.37 E-value=2.7 Score=36.52 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH--hhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 38 VDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG--ESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 38 a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~--~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
|+.++|+. =.|+...+|+.|.+-=+. .. .++++|.+++|+|+++-+-+.-|..
T Consensus 505 As~~~L~~---v~GiG~~~A~~Iv~yR~~-~G~f~sr~~L~~V~giG~k~~ekl~~FL~ 559 (785)
T 3bzc_A 505 ASAALLAR---ISGLNSTLAQNIVAHRDA-NGAFRTRDELKKVSRLGEKTFEQAAGFLR 559 (785)
T ss_dssp CCHHHHHT---STTCCHHHHHHHHHHHHH-HCCCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred CCHHHHhh---cCCCCHHHHHHHHHHHHh-cCCCCCHHHHHhcCCCCHHHHHHhhheEE
Confidence 55555443 258888899998774222 11 3789999999999999988777664
No 99
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=69.09 E-value=3 Score=32.08 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.0
Q ss_pred HHHhccCCCCcHHHHHHHHH
Q 033363 72 WTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~ 91 (121)
-+.+..+||||+|||--++.
T Consensus 234 sD~ipGv~GiG~KtA~kLl~ 253 (336)
T 1rxw_A 234 TDYNEGVKGVGVKKALNYIK 253 (336)
T ss_dssp BTTBCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHH
Confidence 34567899999999987765
No 100
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=68.97 E-value=2.2 Score=32.65 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=17.7
Q ss_pred hhHHHhccCCCCcHHHHHHHHH
Q 033363 70 ESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 70 ~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
++-+-+-.+||||||||--++.
T Consensus 200 D~sDniPGVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 200 DLGDNIRGVEGIGAKRGYNIIR 221 (290)
T ss_dssp BGGGTBCCCTTCCHHHHHHHHH
T ss_pred CCcCCCCCCCcCCHhHHHHHHH
Confidence 4556677899999999987764
No 101
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=68.34 E-value=2.1 Score=28.40 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred hhHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 70 ESWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 70 ~~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
-+.++|..+||||+-.|+-++..+..
T Consensus 55 a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 55 APKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp SBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999887753
No 102
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=68.04 E-value=4.8 Score=24.24 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHHHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYAADA 88 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~ 88 (121)
+.|.++|+.. -.+.++|..++|||++-.+-
T Consensus 33 ~~L~~iA~~~-P~t~~eL~~i~Gvg~~k~~~ 62 (77)
T 2rhf_A 33 ATLEALAARQ-PRTLAELAEVPGLGEKRIEA 62 (77)
T ss_dssp HHHHHHHHHC-CCSHHHHTTSTTTCHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHhhCCCCCHHHHHH
Confidence 4455554442 24788999999999876654
No 103
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=67.17 E-value=13 Score=23.65 Aligned_cols=38 Identities=8% Similarity=0.276 Sum_probs=32.6
Q ss_pred CC-CHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 033363 29 CP-DAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQE 66 (121)
Q Consensus 29 ~p-t~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~ 66 (121)
-| +.+.|.++|.+|+.++|+..+|+..-...|+++-+.
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 45 789999999999999999999998888888776543
No 104
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=66.41 E-value=3.8 Score=31.39 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=26.2
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHhhHHHhc-cCCCCcHHHHHHHHHH
Q 033363 46 IISTLGLQKKRAPMIKRFSQEYLGESWTHVT-QLHGVGKYAADAFAIF 92 (121)
Q Consensus 46 ~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~-~lpGIG~~tA~~vl~f 92 (121)
++..+|+.. +.+..++-.. + -+.+. .+||||+|||--++.-
T Consensus 203 v~~~~gl~~---~q~id~~~L~--G-sD~~p~GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 203 VLEDLRISL---DDLIDIAIFM--G-TDYNPGGVKGIGFKRAYELVRS 244 (326)
T ss_dssp HHHHHTCCH---HHHHHHHHHH--C-CTTSTTTTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCH---HHHHHHHHHc--C-CCCCCCCCCCcCHHHHHHHHHc
Confidence 345567763 3444444433 2 44566 8999999999877764
No 105
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=66.02 E-value=1.9 Score=38.60 Aligned_cols=45 Identities=16% Similarity=-0.045 Sum_probs=33.0
Q ss_pred cCChhHHHHHHHHHHHHHHH--hhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 50 LGLQKKRAPMIKRFSQEYLG--ESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 50 ~Gl~~~Ka~~i~~~a~~i~~--~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
.|+..+||+.|.+.-+.-.. .++++|.++||+|+++-.-..-|-.
T Consensus 723 ~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflr 769 (1030)
T 3psf_A 723 SGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLY 769 (1030)
T ss_dssp TTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSSCHHHHHHHTTTEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCccHHHHHhccCeEE
Confidence 68888899988764431111 3789999999999999877766543
No 106
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=65.67 E-value=3.9 Score=32.12 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=23.9
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhhHHHhc-cCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFSQEYLGESWTHVT-QLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~-~lpGIG~~tA~~vl~ 91 (121)
+..+|+.. ..+..++-.. + -+.+. .+||||+|||--++.
T Consensus 230 ~~~~gl~~---~q~id~~~L~--G-sDy~p~GVpGIG~KtA~kLl~ 269 (363)
T 3ory_A 230 LVQLGITL---ENLIDIGILL--G-TDYNPDGFEGIGPKKALQLVK 269 (363)
T ss_dssp HHHHTCCH---HHHHHHHHHH--C-BTTBTTCSTTCCHHHHHHHHH
T ss_pred HHHhCcCH---HHHHHHHHHh--C-CCCCCCCCCCcCHHHHHHHHH
Confidence 44567753 3333433332 2 23356 999999999988775
No 107
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=65.64 E-value=2.6 Score=38.40 Aligned_cols=45 Identities=16% Similarity=-0.045 Sum_probs=33.3
Q ss_pred cCChhHHHHHHHHHHHHHHH--hhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 50 LGLQKKRAPMIKRFSQEYLG--ESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 50 ~Gl~~~Ka~~i~~~a~~i~~--~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
.|+..+||+.|.+.-+.-.. .++++|.++||+|+++-.-..-|-.
T Consensus 720 ~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflr 766 (1219)
T 3psi_A 720 SGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLY 766 (1219)
T ss_dssp TTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCSCHHHHHHHGGGEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCccHHHHHhccccEE
Confidence 68888999998765432111 3789999999999999877766554
No 108
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=65.48 E-value=2.2 Score=29.00 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=18.5
Q ss_pred HHHhccCCCCcHHHHHHHHHHh
Q 033363 72 WTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
.-.|+.++|||+.+|..++.-+
T Consensus 16 ~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 16 DVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp HHHHTTSSSCCSHHHHHHTTTT
T ss_pred eeehhccccccHHHHHHHHHHc
Confidence 3479999999999999988644
No 109
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=65.14 E-value=3.6 Score=31.82 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=18.3
Q ss_pred HHHhc-cCCCCcHHHHHHHHHHhcCCCCcc
Q 033363 72 WTHVT-QLHGVGKYAADAFAIFCTGKWDRV 100 (121)
Q Consensus 72 ~~~L~-~lpGIG~~tA~~vl~f~~~~~~~v 100 (121)
-+.+. .+||||+|||--++. .+|..+.+
T Consensus 232 ~D~~p~Gv~GIG~KtA~kLi~-~~gsle~i 260 (346)
T 2izo_A 232 TDYNPDGIRGIGPERALKIIK-KYGKIEKA 260 (346)
T ss_dssp CSSSTTCSTTCCHHHHHHHHH-HSSCC---
T ss_pred CCCCCCCCCCcCHHHHHHHHH-HcCCHHHH
Confidence 34566 899999999987775 34544333
No 110
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=63.80 E-value=4.6 Score=31.11 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHhhHHHhc-cCCCCcHHHHHHHHHHhcCC
Q 033363 46 IISTLGLQKKRAPMIKRFSQEYLGESWTHVT-QLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 46 ~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~-~lpGIG~~tA~~vl~f~~~~ 96 (121)
++..+|+.. ..+..+|-.. + -+.+. .+||||+|||--++. .+|.
T Consensus 215 v~~~~gl~~---~q~id~~~L~--G-~Dy~p~gv~GiG~ktA~kli~-~~gs 259 (340)
T 1b43_A 215 VLKELKLTR---EKLIELAILV--G-TDYNPGGIKGIGLKKALEIVR-HSKD 259 (340)
T ss_dssp HHHHHTCCH---HHHHHHHHHH--C-CTTSTTCSTTCCHHHHHHHHH-TCSS
T ss_pred HHHHhCCCH---HHHHHHHHhc--C-CCCCCCCCCCccHHHHHHHHH-HcCC
Confidence 345567753 3344444333 2 34566 899999999977665 4443
No 111
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=62.97 E-value=3.3 Score=32.22 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=13.9
Q ss_pred hccCCCCcHHHHHHHHH
Q 033363 75 VTQLHGVGKYAADAFAI 91 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~ 91 (121)
.-.+||||+|||--++.
T Consensus 234 ~~gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 234 CESIRGIGPKRAVDLIQ 250 (341)
T ss_dssp SCCCTTCCHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHH
Confidence 44789999999987764
No 112
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=59.84 E-value=3.7 Score=33.98 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCCC----HHHHhcCCHHHHHHHHhhcC
Q 033363 15 LLKAGRVISDLFTLCPD----AKTATEVDAEEIEKIISTLG 51 (121)
Q Consensus 15 ~~~v~~v~~~l~~~~pt----~~~la~a~~~eL~~~i~~~G 51 (121)
.+.|.++|.+|..+|+. |+.-..-++++|+++|..+|
T Consensus 523 ~~~v~P~Y~~F~~ry~~~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 523 ISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcccCCHHHHHHHHHHhc
Confidence 35688999999999875 77777889999999998775
No 113
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=58.94 E-value=6.6 Score=24.17 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYAAD 87 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~ 87 (121)
+.|.++|+.. -.+.++|..++|||++-.+
T Consensus 35 ~tL~~iA~~~-P~t~~eL~~i~Gvg~~k~~ 63 (85)
T 2kv2_A 35 VTLKKLAESL-SSDPEVLLQIDGVTEDKLE 63 (85)
T ss_dssp HHHHHHHHHC-CSCHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHhhCCCCCHHHHH
Confidence 4455555442 1478899999999976543
No 114
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=58.29 E-value=8.8 Score=30.08 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=22.5
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
+..+|+.. ..+..++-..- .+ ....+||||++||--++.
T Consensus 212 ~~~~gl~~---~q~id~~~L~G-~D--~~d~IpGIG~KtA~kLl~ 250 (379)
T 1ul1_X 212 LQELGLNQ---EQFVDLCILLG-SD--YCESIRGIGPKRAVDLIQ 250 (379)
T ss_dssp HHHHTCCH---HHHHHHHHHHH-CS--SSCCCTTCCHHHHHHHHH
T ss_pred HHHhCCCH---HHHHHHHHHhC-CC--cCCCCCCcCHHHHHHHHH
Confidence 44567753 33444443331 12 233689999999977664
No 115
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=57.77 E-value=8.8 Score=23.82 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYAAD 87 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~ 87 (121)
+.|.++|+.. -.+.++|..++|||+.-.+
T Consensus 41 ~tL~eiA~~~-P~t~~eL~~i~Gvg~~k~~ 69 (89)
T 1wud_A 41 ATLIEMAEQM-PITASEMLSVNGVGMRKLE 69 (89)
T ss_dssp HHHHHHHHHC-CCSHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHhhCCCCCHHHHH
Confidence 3444444432 1478899999999985543
No 116
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=57.00 E-value=6.9 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHhccCCCCcHHHHHHHHHHhcCC
Q 033363 73 THVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 73 ~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
+.+..+||||+..+.-.---++.+
T Consensus 18 K~V~evpGIG~~~~~~L~~~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEERGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred CCcccCCCcCHHHHHHHHHcCccH
Confidence 579999999999998777655554
No 117
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=56.45 E-value=2.3 Score=31.53 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHH
Q 033363 22 ISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRF 63 (121)
Q Consensus 22 ~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~ 63 (121)
...|.+.|.|.+.+.+|+.+||.++ |+....|+.|.+.
T Consensus 186 ak~Ll~~FGSl~~i~~As~eeL~~V----GIG~~~A~~I~~~ 223 (226)
T 3c65_A 186 KKALLNYFGSVKKMKEATVEELQRA----NIPRAVAEKIYEK 223 (226)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHhCCHHHHHhCCHHHHHHc----CCCHHHHHHHHHH
Confidence 4567788999999999999997553 6777788877653
No 118
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=56.05 E-value=2.5 Score=34.99 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHH-----HHHHHHhhHHHhccCCCCcHHHHHHHHHHhcCCCCccCcchH-HHHHHHHH
Q 033363 40 AEEIEKIISTLGLQKKRAPMIKRF-----SQEYLGESWTHVTQLHGVGKYAADAFAIFCTGKWDRVRPTDH-MLNYYWEF 113 (121)
Q Consensus 40 ~~eL~~~i~~~Gl~~~Ka~~i~~~-----a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~~~~~~v~p~D~-~l~~~~~w 113 (121)
..++...|.+.|++...|..|.+. .+.+.++.+. |.+++|||.++||.+.. .+| +.++|. .++....|
T Consensus 7 ~~~~~~~l~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~-l~~i~gigf~~aD~ia~-~~g----~~~~~~~R~~a~~~~ 80 (574)
T 3e1s_A 7 ERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFT-LTEVEGIGFLTADKLWQ-ARG----GALDDPRRLTAAAVY 80 (574)
T ss_dssp -------------------------------------CG-GGTSSSCCHHHHHTTC------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhCCcc-cCCcCCCCHHHHHHHHH-HcC----CCCCCHHHHHHHHHH
Confidence 345556677888887777666543 1222223343 48999999999998874 343 556664 44444444
No 119
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=54.29 E-value=26 Score=28.97 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=31.5
Q ss_pred hcCChhHHHHHHHHHHHHHHHh---hHHHhccCCCCcHHHHHHHHHHhcCC
Q 033363 49 TLGLQKKRAPMIKRFSQEYLGE---SWTHVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 49 ~~Gl~~~Ka~~i~~~a~~i~~~---~~~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
.+|.. .=+..+..+++.+..+ ..-.|.++||||+..|..+-..++..
T Consensus 631 ~~~~~-~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~s 680 (715)
T 2va8_A 631 ELKLN-EHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKE 680 (715)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCCS
T ss_pred HhCcH-HHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCCC
Confidence 45554 2345566666666653 45679999999999999776555433
No 120
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=54.22 E-value=9.4 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHHHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYAADA 88 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~ 88 (121)
..|.++|+.. -.+.++|..++|||++-.+-
T Consensus 43 ~tL~emA~~~-P~t~~eL~~I~Gvg~~K~~~ 72 (103)
T 2e1f_A 43 KILVDMAKMR-PTTVENVKRIDGVSEGKAAM 72 (103)
T ss_dssp HHHHHHHHHC-CCSHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHhcCCCCCHHHHHH
Confidence 4455544431 13778899999999866543
No 121
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=52.10 E-value=6.6 Score=30.62 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.5
Q ss_pred hccCCCCcHHHHHHHHHH
Q 033363 75 VTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f 92 (121)
+..+||||+|||--++.-
T Consensus 227 ~pgv~GiG~ktA~kli~~ 244 (352)
T 3qe9_Y 227 LSSLRGIGLAKACKVLRL 244 (352)
T ss_dssp SCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCeeHHHHHHHHHH
Confidence 458999999999877653
No 122
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=51.50 E-value=21 Score=27.16 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=30.1
Q ss_pred hcCChhHHHHHHHHHHHHHHHhhH---HHhccCCCCcHHHHHHHH
Q 033363 49 TLGLQKKRAPMIKRFSQEYLGESW---THVTQLHGVGKYAADAFA 90 (121)
Q Consensus 49 ~~Gl~~~Ka~~i~~~a~~i~~~~~---~~L~~lpGIG~~tA~~vl 90 (121)
..|.. .=+..+.++++.+..+.| ..|.+|||||+..+..+-
T Consensus 135 ~~g~~-~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~ 178 (339)
T 2q0z_X 135 SNGWL-SPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCT 178 (339)
T ss_dssp HTTBH-HHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHH
T ss_pred HcCCH-HHHHHHHHHHHHHHHhcCCCCCceecCCCCCHHHHHHHH
Confidence 45654 446778888888887433 469999999999887654
No 123
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=50.62 E-value=16 Score=30.13 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCC------HHHHhcCCHHHHHHHHhhc
Q 033363 15 LLKAGRVISDLFTLCPD------AKTATEVDAEEIEKIISTL 50 (121)
Q Consensus 15 ~~~v~~v~~~l~~~~pt------~~~la~a~~~eL~~~i~~~ 50 (121)
.+.|.++|.+|..+|.+ |+....-++++|+++|..+
T Consensus 525 ~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~L 566 (571)
T 2pft_A 525 KDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRL 566 (571)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHH
Confidence 35688999999988754 8888899999999999765
No 124
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=50.33 E-value=15 Score=23.72 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=29.4
Q ss_pred HhhcCChhHHHHHHHHHHH-----HHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 47 ISTLGLQKKRAPMIKRFSQ-----EYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~-----~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
|..++|+ .|+.+-.+-+. .++..+.++|++++|+|+++.+-|.-
T Consensus 26 Ie~L~LS-vRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 74 (98)
T 1coo_A 26 VDDLELT-VRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 74 (98)
T ss_dssp GGGGTCC-TTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHH
Confidence 5567887 45544433222 22235788999999999999987754
No 125
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=50.28 E-value=37 Score=30.42 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.8
Q ss_pred hHHHhccCCCCcHHHHHHHHHHh
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+...|..++|+||..|..+.-+-
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35679999999999999998755
No 126
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=48.93 E-value=12 Score=23.91 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYAAD 87 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~ 87 (121)
..|.++|+.. -.+.++|..++|||+.-.+
T Consensus 50 ~tL~eiA~~~-P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 50 VTLKKLAESL-SSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp HHHHHHHHHC-CCCHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHhhCCCCCHHHHH
Confidence 4455554441 1478899999999986554
No 127
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=44.72 E-value=13 Score=28.00 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHhccCCCCcHHHHHHHHH
Q 033363 72 WTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~ 91 (121)
...|+++|||++..|..++.
T Consensus 236 ~~mL~~IpGVs~~~A~~I~~ 255 (311)
T 2ziu_A 236 ARQLMQISGVSGDKAAAVLE 255 (311)
T ss_dssp HHHHTTBTTCCHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHH
Confidence 46799999999999999874
No 128
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=44.66 E-value=13 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.2
Q ss_pred hHHHhccCCCCcHHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAIF 92 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f 92 (121)
+.++|..+||||+..|..+..+
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~y 527 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAH 527 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHhhcCCCCHHHHHHHHHH
Confidence 6789999999999999998877
No 129
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=43.19 E-value=34 Score=29.15 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHH
Q 033363 21 VISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQ 65 (121)
Q Consensus 21 v~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~ 65 (121)
....|.+.|+|+++|.+++.++|.+ --|+....|+.|.+..+
T Consensus 524 ~Ak~La~~Fgsl~~l~~As~eeL~~---i~GIG~~~A~sI~~ff~ 565 (671)
T 2owo_A 524 TAAGLAAYFGTLEALEAASIEELQK---VPDVGIVVASHVHNFFA 565 (671)
T ss_dssp HHHHHHHHHCSHHHHHTCCHHHHTT---STTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhh---cCCCCHHHHHHHHHHHH
Confidence 3445667899999999999998543 24777889998877653
No 130
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=42.96 E-value=7.4 Score=25.57 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhHHHhccCCCCcHHH
Q 033363 58 PMIKRFSQEYLGESWTHVTQLHGVGKYA 85 (121)
Q Consensus 58 ~~i~~~a~~i~~~~~~~L~~lpGIG~~t 85 (121)
+.|.++|+.. -.+.++|..++|||++-
T Consensus 50 ~tL~emA~~~-P~t~~eL~~I~Gvg~~K 76 (113)
T 2dgz_A 50 KILVDMAKMR-PTTVENVKRIDGVSEGK 76 (113)
T ss_dssp HHHHHHHHHC-CCSHHHHHHSSSCCTTG
T ss_pred HHHHHHHHhC-CCCHHHHHhCCCCCHHH
Confidence 4455555442 14789999999999743
No 131
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=42.04 E-value=22 Score=21.69 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=33.2
Q ss_pred CHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 39 DAEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 39 ~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
+.++|..-|+.+ ++||-..+.=...+.|+....-.+||+|...|-+++.-
T Consensus 4 di~eLkkevkKL---~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~ 53 (71)
T 2js5_A 4 GAEELKAKLKKL---NAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQ 53 (71)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---HHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 455666556555 45666666555666666666677888888888877653
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=41.93 E-value=38 Score=25.05 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=33.4
Q ss_pred HhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 27 TLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 27 ~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
..+.|.++++.+++++|. +-.|++..++..+++.|+...+
T Consensus 22 ~gi~t~~~~~~~~~~~L~---~~~gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 22 AGYIDFMKIATATVGELT---DIEGISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp HTCCSHHHHHTCCHHHHH---TSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHhCCHHHHH---HhhCcCHHHHHHHHHHHHHhhh
Confidence 358899999999999975 4579999999999998887654
No 133
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=39.39 E-value=12 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHhhHHHhccCCCCcHHHHHHHHH
Q 033363 40 AEEIEKIISTLGLQKKRAPMIKRFSQEYLGESWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 40 ~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~~tA~~vl~ 91 (121)
.++|..-|+.+ ++||-..+.=...+.|+....-.+||.|...|-+++.-
T Consensus 17 i~eLkkevkKL---~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~ 65 (81)
T 3csx_A 17 VADLKKKVRKL---NSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRE 65 (81)
T ss_dssp -CCHHHHHHHH---HHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHH
Confidence 34445445554 46666666666666666666677888899888877653
No 134
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=39.25 E-value=53 Score=29.98 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.6
Q ss_pred hHHHhccCCCCcHHHHHHHHHHh
Q 033363 71 SWTHVTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~f~ 93 (121)
+...|..++|+||..|..+.-+-
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r 734 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSL 734 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHH
Confidence 35779999999999999998654
No 135
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=38.26 E-value=64 Score=19.30 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHh-CCCHHHHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHHHHhhHHHhccCCCCcH
Q 033363 20 RVISDLFTL-CPDAKTATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEYLGESWTHVTQLHGVGK 83 (121)
Q Consensus 20 ~v~~~l~~~-~pt~~~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i~~~~~~~L~~lpGIG~ 83 (121)
.+...|.+. |-+.+.+..++.++|. .+|... -|.+.+ ...+.+ .+......|+||
T Consensus 21 ~Y~~~F~~~~~d~~~~l~~lt~~DL~----~lGI~~~GhrkkIl-~ai~~l----~~~~~~~~~~~~ 78 (81)
T 1ucv_A 21 RYRDHFAAGGYSSLGMVLRMNAQDVR----ALGITLMGHQKKIL-GSIQTM----RAQLTSTQGSGP 78 (81)
T ss_dssp GGHHHHHHTTCCBHHHHTTCCHHHHH----HHTCCCHHHHHHHH-HHHHHH----HHHHSCCSSCSS
T ss_pred HHHHHHHHcCCChHHHHHHcCHHHHH----hCCCCChhHHHHHH-HHHHHH----HHHHhhcCCCCC
Confidence 344455543 5569999999999965 467652 332333 323322 344567777776
No 136
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=38.01 E-value=35 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=28.9
Q ss_pred hcCChhHHHHHHHHHHHHHHHh---hHHHhccCCCCcHHHHHHHHHHhc
Q 033363 49 TLGLQKKRAPMIKRFSQEYLGE---SWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 49 ~~Gl~~~Ka~~i~~~a~~i~~~---~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
..|... =+..+..+++.+..+ ..-.|.+|||||+..|..+...++
T Consensus 620 ~~g~~~-~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 620 VLGAYE-IVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHTCGG-GHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HcCcHH-HHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 455542 234555566666653 335689999999999987764444
No 137
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=36.50 E-value=52 Score=21.75 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 033363 33 KTATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEYLG 69 (121)
Q Consensus 33 ~~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i~~ 69 (121)
..+..+...||.++++..|+.- .|+..+.++.+.+..
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~ 73 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQN 73 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHh
Confidence 4577789999999999999876 799999888877755
No 138
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=36.14 E-value=26 Score=21.58 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCHHHHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 033363 30 PDAKTATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEYLG 69 (121)
Q Consensus 30 pt~~~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i~~ 69 (121)
+.+.++......||.+.++.-||.- .|+..|.++-..+.+
T Consensus 21 ~l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 21 ALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp SCCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred cchHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 4566888899999999999888875 788888777766543
No 139
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=35.80 E-value=72 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 033363 29 CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEY 67 (121)
Q Consensus 29 ~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i 67 (121)
..|++++.+++++++.++ +|+.....+.+.+.++.+
T Consensus 178 i~s~~~l~~~~~~e~~~l---l~~~~~~~~~v~~~~~~~ 213 (328)
T 3im1_A 178 VETVYDIMALEDEERDEI---LTLTDSQLAQVAAFVNNY 213 (328)
T ss_dssp CCSHHHHHHSCHHHHHHH---CCCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHhcCCHHHHHhH---hCCCHHHHHHHHHHHHhC
Confidence 458888888888888776 477766667776666654
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=35.67 E-value=83 Score=24.63 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHHH-hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 033363 22 ISDLFT-LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG 69 (121)
Q Consensus 22 ~~~l~~-~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~ 69 (121)
..+|.+ .|-|.++++.+++.+|. +-.|++..|+..|++.+..+..
T Consensus 96 ~~~L~~ag~~tv~~~~~~~~~~L~---~~~gis~~~~~~i~~~a~~~~~ 141 (400)
T 3lda_A 96 VKKLRESGLHTAEAVAYAPRKDLL---EIKGISEAKADKLLNEAARLVP 141 (400)
T ss_dssp HHHHHHTTCCBHHHHHHSCHHHHH---TSTTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCcHHHHHhCCHHHHH---HHhCCCHHHHHHHHHHHHHhcc
Confidence 445554 48899999999999975 4579999999999888876543
No 141
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.64 E-value=3.2 Score=28.86 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=17.9
Q ss_pred hHHHhccCCCCcHHHHHHHHH
Q 033363 71 SWTHVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 71 ~~~~L~~lpGIG~~tA~~vl~ 91 (121)
..-.|+.++|||+.+|..++.
T Consensus 60 v~~aLt~IyGIG~~~A~~I~~ 80 (145)
T 3bbn_M 60 VEYSLQYIHGIGRSRSRQILL 80 (145)
T ss_dssp TTTGGGGSTTCCSSTTTGGGT
T ss_pred EEEeeeeecCccHHHHHHHHH
Confidence 345799999999999998875
No 142
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=35.54 E-value=77 Score=19.47 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=26.4
Q ss_pred hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 033363 28 LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQE 66 (121)
Q Consensus 28 ~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~ 66 (121)
...|.+++..+|+++|.+. +|++-.....|++....
T Consensus 24 ~I~Tv~Dfl~~d~~eL~~~---~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 24 RIKTVVDLVSADLEEVAQK---CGLSYKALVALRRVLLA 59 (83)
T ss_dssp TCCCHHHHTTSCHHHHHHH---HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHhCCHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence 4789999999999998764 67875566566554433
No 143
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=34.59 E-value=21 Score=25.68 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=16.9
Q ss_pred hccCCCCcHHHHHHHHHHhcC
Q 033363 75 VTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~~~ 95 (121)
+.++||||++|+.-...++..
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~ 206 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQ 206 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCC
T ss_pred cccccCCCHHHHHHHHHcCCC
Confidence 788999999999987655543
No 144
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=34.58 E-value=27 Score=25.46 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-hhHHHhcc-CCC-------CcHHHHHHH
Q 033363 37 EVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG-ESWTHVTQ-LHG-------VGKYAADAF 89 (121)
Q Consensus 37 ~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~-~~~~~L~~-lpG-------IG~~tA~~v 89 (121)
.|+.++|+. |. |....+|+.|.+-=+. -. .+.++|.. ++| ||+++.+-+
T Consensus 128 TA~~~eL~~-Lp--GIG~k~A~~IIeyRe~-G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 128 TTRMHQLEL-LP--GVGKKMMWAIIEERKK-RPFESFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp CSSSBGGGG-ST--TCCHHHHHHHHHHHHH-SCCCSHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHhc-CC--CcCHHHHHHHHHHHhc-CCCCCHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 677777643 44 5566788888775554 11 47899977 999 666666554
No 145
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=33.00 E-value=70 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 033363 29 CPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQE 66 (121)
Q Consensus 29 ~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~ 66 (121)
..|++++.+++++++.+++ |+.+...+.+.++++.
T Consensus 182 i~s~~~l~~~~~~e~~~ll---~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 182 VESVFDIMEMEDEERNALL---QLTDSQIADVARFCNR 216 (339)
T ss_dssp CCSHHHHHHSCHHHHHHHH---CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHhCCHHHHHHHH---CCCHHHHHHHHHHHHh
Confidence 4589999999999988876 5766666666555443
No 146
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=30.22 E-value=42 Score=26.60 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=32.9
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---hhHHHhccCC
Q 033363 33 KTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG---ESWTHVTQLH 79 (121)
Q Consensus 33 ~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~---~~~~~L~~lp 79 (121)
..|...+.+||++.+..+|....||+.|.+ ++.. .++++.+.||
T Consensus 18 ~~l~~~~~~~l~~~~~~~g~~~fra~qi~~---w~~~~~~~~~~~mt~l~ 64 (404)
T 3rfa_A 18 INLLDLNRQQMREFFKDLGEKPFRADQVMK---WMYHYCCDNFDEMTDIN 64 (404)
T ss_dssp EEGGGCCHHHHHHHHHHTTCCHHHHHHHHH---HHHHSCCCCGGGCTTSC
T ss_pred CCcccCCHHHHHHHHHHcCCcchHHHHHHH---HHHhcCCCChHHhcccC
Confidence 368899999999999999999999988865 5554 2344444443
No 147
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=30.19 E-value=43 Score=27.99 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHhCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHH
Q 033363 22 ISDLFTLCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQ 65 (121)
Q Consensus 22 ~~~l~~~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~ 65 (121)
...|.+.|+|+++|.+++.++|.++ =|+....|+.|.+.-+
T Consensus 525 a~~La~~f~sl~~l~~a~~e~l~~i---~giG~~~A~si~~ff~ 565 (586)
T 4glx_A 525 AAGLAAYFGTLEALEAASIEELQKV---PDVGIVVASHVHNFFA 565 (586)
T ss_dssp HHHHHHHHCSHHHHHHCCHHHHTTS---TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHccCHHHHhcC---CCccHHHHHHHHHHHc
Confidence 3445577999999999999997542 4667788888877543
No 148
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.38 E-value=61 Score=18.50 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=30.4
Q ss_pred HHHHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHHHHh
Q 033363 32 AKTATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEYLGE 70 (121)
Q Consensus 32 ~~~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i~~~ 70 (121)
+.++..+...||.+.++.-|+.. .|+..|.++.+.+..+
T Consensus 7 ~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred ccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 34466788899999999888865 7998888888776553
No 149
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.18 E-value=17 Score=22.93 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=36.9
Q ss_pred CHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHHH------hhHHHhccCCCCcHHHHHHHHHHhcC
Q 033363 31 DAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYLG------ESWTHVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 31 t~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~~------~~~~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
-|.+|...+.+|+.+.|+-+|+...=+... .+.-++ -+.+.|..=-|+-+-=+-=++.|--|
T Consensus 11 pP~dLs~lSv~EVs~~Lr~igL~e~vv~~F---~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~G 78 (84)
T 2dkz_A 11 PPADLSGLSIEEVSKSLRFIGLSEDVISFF---VTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFING 78 (84)
T ss_dssp CCSCCSSCCHHHHHHHGGGTCCCHHHHHHH---HTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHHC
T ss_pred CchhhhhcCHHHHHHHHHHcCCcHHHHHHH---HHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 467889999999999999999984222221 111111 13455555445555555555555544
No 150
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=28.76 E-value=71 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=34.5
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhhH---HHhccCCCCcHHHHHHHHHHhcC
Q 033363 47 ISTLGLQKKRAPMIKRFSQEYLGESW---THVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 47 i~~~Gl~~~Ka~~i~~~a~~i~~~~~---~~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
....|.. .-+..+.++++.+..+.| ..|.+|||||+..|......++.
T Consensus 1529 ~~~~g~~-~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~ 1579 (1724)
T 4f92_B 1529 LSSNGWL-SPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE 1579 (1724)
T ss_dssp HHHTTBH-HHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCC
T ss_pred HHHCCCH-HHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCC
Confidence 4456664 456677777777776433 46999999999999987766554
No 151
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=28.73 E-value=1.6e+02 Score=20.89 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=32.3
Q ss_pred CHHHHHHHHhhcCChhHHHHHHHH---HHHHHHHhhHHHhccCCCCcHHHHHHHHHHhc
Q 033363 39 DAEEIEKIISTLGLQKKRAPMIKR---FSQEYLGESWTHVTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 39 ~~~eL~~~i~~~Gl~~~Ka~~i~~---~a~~i~~~~~~~L~~lpGIG~~tA~~vl~f~~ 94 (121)
+.+++.+++..+||..+||+-+.+ ++..+.+ .+.+-..=.|+-+.+..++...+-
T Consensus 3 ~~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~-~i~ea~~~~~~dk~~g~LLy~lat 60 (187)
T 3tl4_X 3 SVEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYK-LIKETPSDYQWNKSTRALVHNLAS 60 (187)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHH-HHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHH-HHHHccccCCCCHHHHHHHHHHHH
Confidence 457888999999999999987653 2222211 111111123556666666555554
No 152
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=28.12 E-value=30 Score=26.39 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=28.5
Q ss_pred hcCChhHHHHHHHHHHHHHHH---------hhHH------HhccCCCCcHHHHHHHHHHhcC
Q 033363 49 TLGLQKKRAPMIKRFSQEYLG---------ESWT------HVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 49 ~~Gl~~~Ka~~i~~~a~~i~~---------~~~~------~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
++|...+ +.+-++|..+.. +... .+.++||||++|+.-+-.++..
T Consensus 141 siGIa~n--k~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~GI~ 200 (356)
T 4dez_A 141 SVGISDN--KQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLAAMGIT 200 (356)
T ss_dssp EEEEESS--HHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHHHTTCC
T ss_pred ccchhcc--HHHHHHHHHHhhhcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHHHcCCC
Confidence 4566644 356666666554 1222 3678999999999887655543
No 153
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.52 E-value=38 Score=28.03 Aligned_cols=30 Identities=7% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHh---hHHHhccCCCCcHHHHHHHH
Q 033363 61 KRFSQEYLGE---SWTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 61 ~~~a~~i~~~---~~~~L~~lpGIG~~tA~~vl 90 (121)
.++++.+..+ ..-.|.++||||+..|..+-
T Consensus 617 ~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~ 649 (702)
T 2p6r_A 617 SGLTERIKHGVKEELLELVRIRHIGRVRARKLY 649 (702)
T ss_dssp TTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHH
Confidence 3344444442 44679999999999997654
No 154
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=27.31 E-value=1.1e+02 Score=19.37 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 033363 1 MAQIYSIRLKEIAILLKAGRVISDLFTLCPDAKT 34 (121)
Q Consensus 1 ~~~~~si~~~~~~~~~~v~~v~~~l~~~~pt~~~ 34 (121)
|+++|.-..-+.....-|+..|.+++. -|....
T Consensus 1 m~tly~~lGg~~~i~~lv~~FY~~v~~-dp~l~~ 33 (124)
T 1s69_A 1 MSTLYEKLGGTTAVDLAVDKFYERVLQ-DDRIKH 33 (124)
T ss_dssp -CCHHHHHTHHHHHHHHHHHHHHHHHT-CTTTGG
T ss_pred CccHHHHccChHHHHHHHHHHHHHHHc-ChHHHH
Confidence 678898887676666678888888885 444333
No 155
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=26.86 E-value=30 Score=27.34 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.2
Q ss_pred hccCCCCcHHHHHHHHHHhc
Q 033363 75 VTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~~ 94 (121)
+.++||||++|+.-+..++.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI 255 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGI 255 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTC
T ss_pred HHHccCCCHHHHHHHHHhCC
Confidence 67889999999998766544
No 156
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.47 E-value=60 Score=16.92 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=10.0
Q ss_pred HHHhhcCChhHHHHHH
Q 033363 45 KIISTLGLQKKRAPMI 60 (121)
Q Consensus 45 ~~i~~~Gl~~~Ka~~i 60 (121)
+.|...||.+.+++.-
T Consensus 9 ~~L~~MGF~~~~a~~A 24 (43)
T 2g3q_A 9 EELSGMGFTEEEAHNA 24 (43)
T ss_dssp HHHHTTTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 3356789986655443
No 157
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=26.28 E-value=28 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=17.2
Q ss_pred HhccCCCCcHHHHHHHHHHhcC
Q 033363 74 HVTQLHGVGKYAADAFAIFCTG 95 (121)
Q Consensus 74 ~L~~lpGIG~~tA~~vl~f~~~ 95 (121)
.+.++||||++|+.-...++..
T Consensus 179 pv~~l~GiG~~~~~~L~~~Gi~ 200 (352)
T 1jx4_A 179 DIADVPGIGNITAEKLKKLGIN 200 (352)
T ss_dssp BGGGSTTCCHHHHHHHHTTTCC
T ss_pred CCCcccccCHHHHHHHHHcCCc
Confidence 3789999999999987655543
No 158
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=25.98 E-value=1.6e+02 Score=20.14 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCHHHHhcCCHHHHHHHHhhcC----ChhHHHHHHHHHHHHHHHhhHHHh
Q 033363 29 CPDAKTATEVDAEEIEKIISTLG----LQKKRAPMIKRFSQEYLGESWTHV 75 (121)
Q Consensus 29 ~pt~~~la~a~~~eL~~~i~~~G----l~~~Ka~~i~~~a~~i~~~~~~~L 75 (121)
--||+++.+.|+++. +..+| ++..|+.=+.++.+.+.....+.|
T Consensus 101 G~tp~eIl~~d~~~f---~~~lGL~~~LSpsR~NGl~am~~~ik~~a~~~~ 148 (155)
T 1ni7_A 101 GKTAAELQAQSPLAL---FDELGLRAQLSASRSQGLNALSEAIIAATKQVL 148 (155)
T ss_dssp TCCHHHHHHSCTHHH---HHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHH---HHHcCchhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999743 33345 566799999999888877555544
No 159
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=25.71 E-value=1.1e+02 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=30.3
Q ss_pred hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 033363 28 LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKRFSQEYL 68 (121)
Q Consensus 28 ~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~~a~~i~ 68 (121)
.|-|.++++.+++.+|.+. .|++..++..+.+.+....
T Consensus 55 g~~t~~~~~~~~~~~L~~~---~~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 55 GYDTLEAIAVASPIELKEV---AGISEGTALKIIQAARKAA 92 (349)
T ss_dssp TCCSHHHHHTCCHHHHHHH---HCCCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHhCCHHHHHhh---cCCCHHHHHHHHHHHhhhc
Confidence 4789999999999997654 6888888888877776544
No 160
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.61 E-value=51 Score=18.45 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHH
Q 033363 32 AKTATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEY 67 (121)
Q Consensus 32 ~~~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i 67 (121)
..++..+...||.+.++.-||.. .|+..|.++.+.+
T Consensus 7 ~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 7 GMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp CCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred cCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 34567788899999999888865 6888777776654
No 161
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=24.02 E-value=99 Score=17.26 Aligned_cols=36 Identities=6% Similarity=0.219 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 033363 34 TATEVDAEEIEKIISTLGLQK--KRAPMIKRFSQEYLG 69 (121)
Q Consensus 34 ~la~a~~~eL~~~i~~~Gl~~--~Ka~~i~~~a~~i~~ 69 (121)
++......+|.+.++.-||.. .|+..|.++-....+
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~ 41 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEE 41 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHh
Confidence 345677888999998888865 788888887766543
No 162
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=23.56 E-value=40 Score=26.79 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=15.4
Q ss_pred hccCCCCcHHHHHHHHHHh
Q 033363 75 VTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~ 93 (121)
+.+|||||++|+..+-.++
T Consensus 284 v~~l~GiG~~~~~~L~~lG 302 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALG 302 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTT
T ss_pred HHhcCCcCHHHHHHHHHcC
Confidence 7889999999998765444
No 163
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=22.69 E-value=8.1 Score=29.25 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHhccCCCCcHHHHHHHH
Q 033363 72 WTHVTQLHGVGKYAADAFA 90 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl 90 (121)
.+.|+++||||+..|..|.
T Consensus 232 ~~~L~~I~GVs~~~A~~I~ 250 (307)
T 2zix_A 232 ARQLMQVRGVSGEKAAALV 250 (307)
T ss_dssp HHTTTCSTTCCSTTTTTSS
T ss_pred HHHHHhccCCCHHHHHHHH
Confidence 5689999999999987764
No 164
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=22.45 E-value=33 Score=23.08 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=31.9
Q ss_pred CCHHHHhcCCHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHhhHHHhc
Q 033363 30 PDAKTATEVDAEEIEKIISTLGL----QKKRAPMIKRFSQEYLGESWTHVT 76 (121)
Q Consensus 30 pt~~~la~a~~~eL~~~i~~~Gl----~~~Ka~~i~~~a~~i~~~~~~~L~ 76 (121)
-||+++.+.|++. +..+|+ +..|+.=+.++.+.+.....+.++
T Consensus 89 ~tp~eIl~~d~~~----~~~lGL~~~LSpsR~nGl~am~~~ik~~a~~~~~ 135 (136)
T 1wlo_A 89 ESPEAVLEVPPGF----YRGYGLEEFFTPLRLRGLEAALLRLQAQVRKALT 135 (136)
T ss_dssp CCTTTTTSSCTTT----TTTTTSHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHhCCHHH----HHHcCchhhcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999853 677785 556888888888888765554443
No 165
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=22.44 E-value=1.1e+02 Score=21.08 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=22.7
Q ss_pred HhCCCHHHHhcCCHHHHHHHHhhcCChh
Q 033363 27 TLCPDAKTATEVDAEEIEKIISTLGLQK 54 (121)
Q Consensus 27 ~~~pt~~~la~a~~~eL~~~i~~~Gl~~ 54 (121)
.+.-|.+++.+.+++||.++++.+|-+.
T Consensus 104 ~~~~TLe~LLemsd~evr~~L~~~ga~e 131 (149)
T 2lpe_A 104 PQELTLDALLEMDEAKAKEMLRRWGAST 131 (149)
T ss_dssp CTTCSHHHHTTSCHHHHHHHHHTTTCCT
T ss_pred hhhccHHHHHhcCHHHHHHHHHHcCCCH
Confidence 3455899999999999999998888643
No 166
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=21.98 E-value=37 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=16.1
Q ss_pred hccCCCCcHHHHHHHHHHhc
Q 033363 75 VTQLHGVGKYAADAFAIFCT 94 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~~ 94 (121)
+.++||||++|+.-...++.
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi 200 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGI 200 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTC
T ss_pred cccccCcCHHHHHHHHHcCC
Confidence 78899999999988765544
No 167
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.93 E-value=53 Score=20.99 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=36.5
Q ss_pred hCCCHHHHhc---CCHHHHHHHHh---hc--------CChhHHHHHHHHHHHHHHH----h---hHHHhccCCCCcHHHH
Q 033363 28 LCPDAKTATE---VDAEEIEKIIS---TL--------GLQKKRAPMIKRFSQEYLG----E---SWTHVTQLHGVGKYAA 86 (121)
Q Consensus 28 ~~pt~~~la~---a~~~eL~~~i~---~~--------Gl~~~Ka~~i~~~a~~i~~----~---~~~~L~~lpGIG~~tA 86 (121)
..|++.++++ .+++++.++++ .. |++ .....+.++++.+.+ + +..++...=|+|+|-|
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~-~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~a 97 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRY-YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLA 97 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEE-EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCce-ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHH
Confidence 3447777764 35666555543 22 222 234556666655554 1 4455555559999988
Q ss_pred HHHHHH
Q 033363 87 DAFAIF 92 (121)
Q Consensus 87 ~~vl~f 92 (121)
=.++-|
T Consensus 98 i~lLE~ 103 (121)
T 2pjp_A 98 IQILEY 103 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 168
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=21.50 E-value=44 Score=27.27 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=15.0
Q ss_pred hccCCCCcHHHHHHHHHHh
Q 033363 75 VTQLHGVGKYAADAFAIFC 93 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~f~ 93 (121)
+.++||||+.|+...-.++
T Consensus 340 V~kl~GIG~~t~~~L~~lG 358 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALG 358 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTT
T ss_pred hhhhccccHHHHHHHHHhC
Confidence 5679999999998766443
No 169
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=21.46 E-value=44 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.8
Q ss_pred hccCCCCcHHHHHHHHH
Q 033363 75 VTQLHGVGKYAADAFAI 91 (121)
Q Consensus 75 L~~lpGIG~~tA~~vl~ 91 (121)
+.++||||++|+.-+..
T Consensus 243 v~~l~GiG~~~~~~L~~ 259 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLES 259 (434)
T ss_dssp GGGSTTCCHHHHHHHHH
T ss_pred cccccCcCHHHHHHHHH
Confidence 67899999999987776
No 170
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.32 E-value=37 Score=29.13 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.9
Q ss_pred HhccCCCCcHHHHHHHHH
Q 033363 74 HVTQLHGVGKYAADAFAI 91 (121)
Q Consensus 74 ~L~~lpGIG~~tA~~vl~ 91 (121)
.+..+|||||++|..+.-
T Consensus 116 ~~~~l~gvg~~~~~~l~~ 133 (780)
T 1gm5_A 116 DIQYAKGVGPNRKKKLKK 133 (780)
T ss_dssp CSSSSSSCCHHHHHHHHT
T ss_pred CchhcCCCCHHHHHHHHH
Confidence 477899999999987664
No 171
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.03 E-value=1.8e+02 Score=23.81 Aligned_cols=29 Identities=7% Similarity=0.274 Sum_probs=18.2
Q ss_pred hCCCHHHHhcCCHHHHHHHHhhcCChhHHHHHHHH
Q 033363 28 LCPDAKTATEVDAEEIEKIISTLGLQKKRAPMIKR 62 (121)
Q Consensus 28 ~~pt~~~la~a~~~eL~~~i~~~Gl~~~Ka~~i~~ 62 (121)
.+.|+++++ +++++|.++| | +.-++.+.+
T Consensus 677 g~~s~~~l~-~~~~~l~~~l---~--~~~~~~i~~ 705 (715)
T 2va8_A 677 GIKELGDVV-MNPDKVKNLL---G--QKLGEKVVQ 705 (715)
T ss_dssp TCCSHHHHH-HCHHHHHHHH---C--HHHHHHHHH
T ss_pred CCCCHHHHh-CCHHHHHHHh---C--hhHHHHHHH
Confidence 356777777 7777777776 3 334444444
No 172
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=20.30 E-value=14 Score=32.16 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHhccCCCCcHHHHHHHHHHhcCC
Q 033363 72 WTHVTQLHGVGKYAADAFAIFCTGK 96 (121)
Q Consensus 72 ~~~L~~lpGIG~~tA~~vl~f~~~~ 96 (121)
-+-+-.+||||+|||--++. -+|-
T Consensus 190 sDnipGVpGIG~KtA~kLl~-~~gs 213 (832)
T 1bgx_T 190 SDNLPGVKGIGEKTARKLLE-EWGS 213 (832)
T ss_dssp SSCCCCCCCSSSCTTTTTGG-GTTS
T ss_pred cccCCCCCCcCchHHHHHHH-HCCC
Confidence 44566799999999977654 3443
Done!