Query 033365
Match_columns 121
No_of_seqs 184 out of 1040
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_L 50S ribosomal protein L 99.4 5.2E-14 1.8E-18 104.4 3.9 52 1-55 91-142 (143)
2 3v2d_P 50S ribosomal protein L 99.3 6.6E-13 2.2E-17 99.3 2.5 51 1-56 97-147 (150)
3 1vq8_L 50S ribosomal protein L 99.3 3.8E-12 1.3E-16 96.0 4.7 51 1-57 94-144 (165)
4 3j21_L 50S ribosomal protein L 99.3 6.2E-12 2.1E-16 93.4 5.7 53 3-57 87-147 (147)
5 2zjr_I 50S ribosomal protein L 99.2 4.9E-13 1.7E-17 100.2 -1.0 53 1-56 90-142 (156)
6 2zkr_l 60S ribosomal protein L 99.1 6.5E-11 2.2E-15 87.5 3.9 50 6-57 97-147 (148)
7 3j21_P 50S ribosomal protein L 99.0 1.1E-10 3.8E-15 84.1 4.2 46 17-66 65-110 (120)
8 3bbo_N Ribosomal protein L15; 99.0 4.7E-12 1.6E-16 101.6 -4.4 55 1-57 163-220 (257)
9 1vq8_O 50S ribosomal protein L 98.7 1.1E-08 3.6E-13 73.2 4.8 38 17-57 62-99 (116)
10 4a17_K L29, RPL27A, 60S riboso 98.7 9.3E-09 3.2E-13 76.5 4.2 39 17-57 109-148 (149)
11 2zkr_o 60S ribosomal protein L 98.5 4.4E-08 1.5E-12 75.5 4.0 46 16-65 82-129 (188)
12 3o58_Y 60S ribosomal protein L 98.5 7.4E-09 2.5E-13 77.2 -0.5 38 17-56 109-147 (149)
13 3iz5_R 60S ribosomal protein L 98.3 4.5E-07 1.6E-11 69.9 5.0 46 17-66 83-130 (188)
14 3jyw_O 60S ribosomal protein L 98.3 3.3E-08 1.1E-12 71.4 -2.6 45 17-65 64-110 (121)
15 3izc_R 60S ribosomal protein R 98.3 2.9E-07 1E-11 70.8 2.4 46 17-66 84-131 (186)
16 4a17_N RPL18, 60S ribosomal pr 98.3 4E-07 1.4E-11 69.8 3.1 69 17-96 84-154 (181)
17 3iz5_O 60S ribosomal protein L 98.2 1.1E-08 3.8E-13 75.9 -7.4 37 18-56 104-142 (144)
18 3bpd_A Uncharacterized protein 50.7 34 0.0012 23.6 5.2 41 17-57 36-79 (100)
19 2x3d_A SSO6206; unknown functi 45.2 48 0.0016 22.7 5.2 41 17-57 35-78 (96)
20 2raq_A Conserved protein MTH88 43.5 43 0.0015 22.9 4.8 41 17-57 36-79 (97)
21 2cok_A Poly [ADP-ribose] polym 42.1 17 0.00058 25.0 2.6 16 41-56 27-42 (113)
22 1l7b_A DNA ligase; BRCT, autos 33.6 29 0.00099 22.7 2.6 17 40-56 23-39 (92)
23 2k6g_A Replication factor C su 33.0 29 0.00099 23.5 2.6 16 41-56 50-65 (109)
24 3tcv_A GCN5-related N-acetyltr 28.0 1.7E+02 0.0057 21.0 6.7 50 30-79 162-235 (246)
25 2ebu_A Replication factor C su 26.8 33 0.0011 23.5 2.0 16 41-56 40-55 (112)
26 2qne_A Putative methyltransfer 25.1 97 0.0033 26.4 5.0 40 39-78 51-94 (495)
27 2jo4_A KIA7; peptide, oligomer 23.3 43 0.0015 17.5 1.6 15 39-53 7-21 (26)
28 2jo5_A KIA7F; peptide, oligome 23.2 43 0.0015 17.5 1.6 15 39-53 7-21 (26)
29 4id3_A DNA repair protein REV1 23.2 59 0.002 19.8 2.6 16 41-56 24-39 (92)
No 1
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.43 E-value=5.2e-14 Score=104.40 Aligned_cols=52 Identities=37% Similarity=0.533 Sum_probs=47.9
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVR 55 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt 55 (121)
+++|+++|+|+. ..++||||++| +|+++|+|++++||++|+++||++||+|+
T Consensus 91 ~~~L~~~glv~~-~~~~VKVLg~G--el~~~l~V~a~~~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 91 LNTLKAANIIGI-QIEFAKVILAG--EVTTPVTVRGLRVTKGARAAIEAAGGKIE 142 (143)
T ss_dssp HHHHGGGTSSCT-TCCEEECCCCS--CCCSCCEEESSCCCHHHHHHHHTTTCEEE
T ss_pred HHHHHHcCcccc-CCCceEEeeCC--cccccEEEEEEecCHHHHHHHHHcCCEEe
Confidence 468999999974 46799999999 79999999999999999999999999987
No 2
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.30 E-value=6.6e-13 Score=99.26 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=46.7
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
+++|+++|||+. +++||||++| +++ +|+|++++||++|+++||++||+|++
T Consensus 97 ~~~L~~~glv~~--~~~VKvLg~G--~l~-~v~V~a~~~S~~A~~kIe~aGG~v~~ 147 (150)
T 3v2d_P 97 PELLVRAGLLKK--GYRLKILGEG--EAK-PLKVVAHAFSKSALEKLKAAGGEPVL 147 (150)
T ss_dssp HHHHHTTTSSCT--TCEEEEECSS--CCC-SCEECBSCBCHHHHHHHHHTTCBCCB
T ss_pred HHHHHHCCCccc--ccceEEEecC--Ccc-cEEEEEEEcCHHHHHHHHHcCCEEEE
Confidence 468999999973 5799999999 799 99999999999999999999999875
No 3
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.25 E-value=3.8e-12 Score=95.96 Aligned_cols=51 Identities=27% Similarity=0.463 Sum_probs=46.3
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
++.|+++|+|. ++|||||+| +|++||+|++++||++|+++||++||+|+++
T Consensus 94 ~~~L~~~gli~----~~vKVLG~G--~l~k~l~Vka~~fSk~A~ekIeaAGG~v~~i 144 (165)
T 1vq8_L 94 VRDVVEEADDA----DYVKVLGAG--QVRHELTLIADDFSEGAREKVEGAGGSVELT 144 (165)
T ss_dssp GGGTCTTCTTS----SEEEEECCS--CCCSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHCCccC----CceEEecCC--ccCCCEEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 35678888882 689999999 8999999999999999999999999999876
No 4
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.25 E-value=6.2e-12 Score=93.39 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=45.2
Q ss_pred hHHHcCCcCCCC--------CCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 3 TLKDAGAIGKQI--------EDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 3 ~L~~~gli~~~~--------k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
+|.++|+++... ++||||||+| +|++||+|+++.||++|+++||++||+|+++
T Consensus 87 ~L~~~gli~~~~~~~vid~~~~GvKVLG~G--~l~~~v~Vka~~fS~~A~ekIeaaGG~v~~~ 147 (147)
T 3j21_L 87 ELMQMGIAYEEGGKIIVDVTQFADKVLGTG--KLTRPLVIKARAFSPKAEEKIKAAGGEAVLV 147 (147)
T ss_dssp TTTTSCCCSSSSBSEEEEGGGGCCEEECCS--CCSSCEEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHcCcccccCCcceecccccCcEEecCC--ccCcCEEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 577889986321 2259999999 7999999999999999999999999999863
No 5
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.24 E-value=4.9e-13 Score=100.15 Aligned_cols=53 Identities=28% Similarity=0.377 Sum_probs=48.0
Q ss_pred ChhHHHcCCcCCCCCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 1 MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 1 m~~L~~~gli~~~~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
++.|+++|+|+. ..++|||||+| +|+.||+|++++||++|+++||++||+|++
T Consensus 90 ~~~L~~~gli~~-~~~~vKVLG~G--~l~~~l~Vka~~fSk~A~ekIEaAGG~v~~ 142 (156)
T 2zjr_I 90 RDTLEAYRLVRR-KNRPVKLLASG--EISRAVTVHVDAASAAAIKAVEAAGGRVVL 142 (156)
T ss_dssp TTTTHHHHHCCC-CSSCCEECCCC--CCCCCCCCCCSEECHHHHHHHGGGSCCCCC
T ss_pred HHHHHhCCcEec-cccceEEeeCC--ccCcCeEEEEEecCHHHHHHHHHcCCEEEE
Confidence 357899999974 45799999999 799999999999999999999999999875
No 6
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.07 E-value=6.5e-11 Score=87.46 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=42.5
Q ss_pred HcCCcCCCCCCcEEEecCCCccccc-cEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 6 DAGAIGKQIEDGVRLMGRGAEKIKW-PIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 6 ~~gli~~~~k~gVKLLg~G~~~l~~-pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
+.++|.......|||||+| ++++ ||+|+++.||++|+++||++||+|+++
T Consensus 97 ~~~vI~~~~~~~vKVLG~G--el~k~~l~Vka~~fSk~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 97 VAPIIDVVRSGYYKVLGKG--KLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp HHHHSTTCSSSCCEEECCS--CCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred cCCeEeccccCceEEecCC--ccccCCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence 6667753223459999999 8998 999999999999999999999999864
No 7
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.05 E-value=1.1e-10 Score=84.06 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=41.7
Q ss_pred cEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHHh
Q 033365 17 GVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLRA 66 (121)
Q Consensus 17 gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lra 66 (121)
++||||+| +++.+++|++++||++|+++||++||+|+ .++.+.++.
T Consensus 65 ~vKVLg~G--~l~~kl~V~a~~fS~~A~ekIe~AGG~v~--~~~qL~~~~ 110 (120)
T 3j21_P 65 PGSVLGAG--KLEKKVIVAAWKFSETARRKIIEAGGEAI--TIEELIERN 110 (120)
T ss_dssp EEEEECSS--CCCSCCEEEEEEECHHHHHHHTTTSSCEE--ESTTHHHHC
T ss_pred EEEEcCCC--eecCCEEEEEeccCHHHHHHHHHcCCEEE--EeHHHHHHC
Confidence 78999999 89999999999999999999999999987 478777653
No 8
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.02 E-value=4.7e-12 Score=101.63 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=48.8
Q ss_pred ChhHHHcCCcCCC---CCCcEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 1 MKTLKDAGAIGKQ---IEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 1 m~~L~~~gli~~~---~k~gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
++.|++.|+|+.. ..++|||||+| +|+++|+|++++||++|+++||++||+|+++
T Consensus 163 le~L~~aGlI~~~gr~~~~~VKVLG~G--eLtkkLtVkA~~fSksA~eKIEaAGG~v~~i 220 (257)
T 3bbo_N 163 LETLKAKRVINPSGRERKLPLKILADG--ELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL 220 (257)
T ss_dssp CSSCCSSSCSSSSCCCCSCCCCCCCSS--CCCSSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred HHHHHhCCcccccccccCccEEEEeCC--ccCCCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 3568899999631 35789999999 8999999999999999999999999999976
No 9
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=98.73 E-value=1.1e-08 Score=73.23 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=36.1
Q ss_pred cEEEecCCCccccccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 17 GVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLLg~G~~~l~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
+|||||+| +++++++|++++||++|+++||++ |+++++
T Consensus 62 ~vKVLg~G--~l~k~l~V~a~~fSk~A~ekIeaA-G~v~~~ 99 (116)
T 1vq8_O 62 PGKVLGSG--VLQKDVTVAAVDFSGTAETKIDQV-GEAVSL 99 (116)
T ss_dssp EEEEECCS--CCCSCCEEEEEEECHHHHHHHHHH-SEEEEH
T ss_pred EEEEeeCC--eecCCEEEEEEecCHHHHHHHHHc-CeEEEh
Confidence 78999999 899999999999999999999999 999864
No 10
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=98.71 E-value=9.3e-09 Score=76.46 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=36.5
Q ss_pred cEEEecCCCccc-cccEEEEEEccCHHHHHHHHHcCCEEEEE
Q 033365 17 GVRLMGRGAEKI-KWPIHLEASRVTVRAKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLLg~G~~~l-~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~ 57 (121)
.|||||+| +| +.||+|++..||++|+++||++||+|+++
T Consensus 109 ~~KvLG~G--~l~~~~v~v~a~~fS~~A~~kIe~aGG~~~~~ 148 (149)
T 4a17_K 109 FFKVLGKG--RLPNQPVVVKAKYFSKTAERRIVAVGGACVLT 148 (149)
T ss_dssp CCEEECCS--CCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred eEEEecCC--ccCCCCEEEEEeecCHHHHHHHHHcCCEEEEe
Confidence 58999999 79 99999999999999999999999998763
No 11
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.55 E-value=4.4e-08 Score=75.53 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=40.4
Q ss_pred CcEEEecCCCccccc--cEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHH
Q 033365 16 DGVRLMGRGAEKIKW--PIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLR 65 (121)
Q Consensus 16 ~gVKLLg~G~~~l~~--pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lr 65 (121)
+.+||||+| +++. +++|.+++||++|+++||++||+|+++ +.+.++
T Consensus 82 ~~~KVLg~G--eL~kvpkLtV~A~~fSksArekIEaAGG~v~~i--dqla~~ 129 (188)
T 2zkr_o 82 VVGTVTDDV--RILEVPKLKVCALRVSSRARSRILKAGGKILTF--DQLALE 129 (188)
T ss_dssp EEEEEECSS--CCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEH--HHHHHH
T ss_pred eecEEECCc--eecccCCeEEEEeecCHHHHHHHHHcCCEEEEh--HHHHHH
Confidence 357999999 8999 999999999999999999999998854 666555
No 12
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=98.54 E-value=7.4e-09 Score=77.22 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=35.9
Q ss_pred cEEEecCCCccc-cccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 17 GVRLMGRGAEKI-KWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 17 gVKLLg~G~~~l-~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
.|||||+| +| +.||+|++..||++|+++||++||+|++
T Consensus 109 ~vKVLG~G--~l~~~~v~Vka~~fS~~A~ekIe~aGG~~~~ 147 (149)
T 3o58_Y 109 YGKILGKG--RIPNVPVIVKARFVSKLAEEKIRAAGGVVEL 147 (149)
T ss_dssp SCCCCCCC--CCCSCCEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred ceEEEcCC--ccCCCCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 48999999 79 9999999999999999999999999875
No 13
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=98.34 E-value=4.5e-07 Score=69.89 Aligned_cols=46 Identities=28% Similarity=0.365 Sum_probs=39.7
Q ss_pred cEEEecCCCcccc--ccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHHh
Q 033365 17 GVRLMGRGAEKIK--WPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLRA 66 (121)
Q Consensus 17 gVKLLg~G~~~l~--~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lra 66 (121)
.+||||+| +++ .+++|.+.++|++|+++||++||++. -+|.|.+++
T Consensus 83 ~gKVLg~G--~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~--~~dqLa~~~ 130 (188)
T 3iz5_R 83 VGTITDDM--RIQEVPAMKVTALRFTETARARIINAGGECL--TFDQLALRA 130 (188)
T ss_dssp EEEEECCC--CSSCCSSEEEEEEECCHHHHHHHHTTSEEEE--EHHHHHHHC
T ss_pred EEEEcCCc--eEcccCCEEEEEeecCHHHHHHHHHcCCEEE--EHHHHHHhC
Confidence 57999999 897 78999999999999999999999975 467766543
No 14
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=98.27 E-value=3.3e-08 Score=71.39 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=38.7
Q ss_pred cEEEecCCCcccc--ccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHH
Q 033365 17 GVRLMGRGAEKIK--WPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLR 65 (121)
Q Consensus 17 gVKLLg~G~~~l~--~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lr 65 (121)
.+||||+| +++ .+++|.++++|++|+++||++||++. -+|.+.++
T Consensus 64 ~~KVlg~G--~l~~~~kl~V~a~~fS~~A~~kIe~AGG~~~--~~dql~~~ 110 (121)
T 3jyw_O 64 VGTVTDDA--RIFEFPKTTVAALRFTAGARAKIVKAGGECI--TLDQLAVR 110 (121)
T ss_dssp SSCBCCCS--CCCSSSCCCEECSSBCTTTTTHHHHHTCCBC--CSTTHHHH
T ss_pred EEEEcCCc--eEcccCCEEEEEEecCHHHHHHHHHcCCEEE--EHHHHHHH
Confidence 57999999 898 79999999999999999999999975 35555543
No 15
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=98.26 E-value=2.9e-07 Score=70.84 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=40.1
Q ss_pred cEEEecCCCcccc--ccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHHh
Q 033365 17 GVRLMGRGAEKIK--WPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLRA 66 (121)
Q Consensus 17 gVKLLg~G~~~l~--~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lra 66 (121)
.+||||+| +++ .+++|.+.++|++|+++||++||++. -+|.|.+++
T Consensus 84 ~gKVLg~G--~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~--~~dqLa~~~ 131 (186)
T 3izc_R 84 VGTVTDDA--RIFEFPKTTVAALRFTAGARAKIVKAGGECI--TLDQLAVRA 131 (186)
T ss_dssp SSEEECCC--CSSCCCCEEEEESCCCHHHHHHHHHHSEECC--CSHHHHHHS
T ss_pred EeEEecCc--eEcccCCEEEEEEecCHHHHHHHHHcCCEEE--EHHHHHHHC
Confidence 57999999 898 79999999999999999999999975 467776653
No 16
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=98.26 E-value=4e-07 Score=69.84 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=50.6
Q ss_pred cEEEecCCCcccc--ccEEEEEEccCHHHHHHHHHcCCEEEEEEecHHHHHhhcCCccccccCCCCCCCCCCCcchhhhh
Q 033365 17 GVRLMGRGAEKIK--WPIHLEASRVTVRAKAAVEAAGGSVRRVHYNKLGLRALLKPEWFEKKGRLLPRPARPPPKLQDKV 94 (121)
Q Consensus 17 gVKLLg~G~~~l~--~pi~Iev~~aS~~Ai~aIE~aGG~Vt~~Yy~~l~Lra~l~P~~F~~k~~~iP~~a~P~~~~~~~~ 94 (121)
.+||||+| +++ .+++|.+.++|++|+++||++||++.+ +|.+.+ -+|.- ++-.|-+..+ -.....+|
T Consensus 84 ~gKVLg~G--~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~--~dqLa~---~~P~G---~nv~ll~g~~-~rea~khf 152 (181)
T 4a17_N 84 TSTVTNDE--RLLTVPKLTVCALKFTETARKRILAAGGKCLT--FDQLAL---KAPTG---TNCFLLRAPK-SREAYRHW 152 (181)
T ss_dssp SSEEECCT--TCCSCCCCEEECSEECHHHHHHHHTTTCEEEC--HHHHHH---HCTTC---TTEEEECCCC-CCSHHHHS
T ss_pred EEEEcCCc--eEcccCCEEEEEeecCHHHHHHHHHcCCEEEE--hHHHHH---hCCCC---CCeEEeeCCc-hHHHHHHh
Confidence 57999999 898 789999999999999999999999764 566655 45542 2223444444 55666666
Q ss_pred hc
Q 033365 95 DS 96 (121)
Q Consensus 95 ~~ 96 (121)
-.
T Consensus 153 g~ 154 (181)
T 4a17_N 153 GK 154 (181)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 17
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=98.15 E-value=1.1e-08 Score=75.92 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=34.9
Q ss_pred EEEecCCCccc--cccEEEEEEccCHHHHHHHHHcCCEEEE
Q 033365 18 VRLMGRGAEKI--KWPIHLEASRVTVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 18 VKLLg~G~~~l--~~pi~Iev~~aS~~Ai~aIE~aGG~Vt~ 56 (121)
+||||+| +| +.||+|++..||++|+++||++||+|++
T Consensus 104 ~KvLG~G--~l~~~~~v~Vka~~fS~~A~ekIe~aGG~v~~ 142 (144)
T 3iz5_O 104 TKVLGKG--MLPPERPIVVKAKLISKVAEKKIKAAGGAVLL 142 (144)
T ss_dssp SEECHHH--HSTTCTTCCCEECGGGSSCSCCCSSCCCCCCC
T ss_pred EEEeCCC--ccCCccCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 8999999 78 9999999999999999999999999764
No 18
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=50.69 E-value=34 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=29.9
Q ss_pred cEEEe--cCCCccccccEEEEEEccCHH-HHHHHHHcCCEEEEE
Q 033365 17 GVRLM--GRGAEKIKWPIHLEASRVTVR-AKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLL--g~G~~~l~~pi~Iev~~aS~~-Ai~aIE~aGG~Vt~~ 57 (121)
||.|. .--.+..+.+|+||.+...-. ..++||..||.|-.+
T Consensus 36 gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSI 79 (100)
T 3bpd_A 36 GVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSV 79 (100)
T ss_dssp EEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 44443 334457889999999988755 567999999987654
No 19
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=45.20 E-value=48 Score=22.69 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=29.8
Q ss_pred cEEEe--cCCCccccccEEEEEEccCHH-HHHHHHHcCCEEEEE
Q 033365 17 GVRLM--GRGAEKIKWPIHLEASRVTVR-AKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLL--g~G~~~l~~pi~Iev~~aS~~-Ai~aIE~aGG~Vt~~ 57 (121)
||.|. .--.+..+.+|+||.+...-. ..++||..||.|..+
T Consensus 35 gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSI 78 (96)
T 2x3d_A 35 GVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSI 78 (96)
T ss_dssp EEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 44443 333457888999999988754 567999999998654
No 20
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=43.54 E-value=43 Score=22.93 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=29.7
Q ss_pred cEEEe--cCCCccccccEEEEEEccCHH-HHHHHHHcCCEEEEE
Q 033365 17 GVRLM--GRGAEKIKWPIHLEASRVTVR-AKAAVEAAGGSVRRV 57 (121)
Q Consensus 17 gVKLL--g~G~~~l~~pi~Iev~~aS~~-Ai~aIE~aGG~Vt~~ 57 (121)
||.|. .--.+..+.+|+||.+...-. ..++||..||.|-.+
T Consensus 36 gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSI 79 (97)
T 2raq_A 36 GVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV 79 (97)
T ss_dssp EEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence 55444 333447788999999988754 567999999998654
No 21
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=42.13 E-value=17 Score=24.99 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCEEEE
Q 033365 41 VRAKAAVEAAGGSVRR 56 (121)
Q Consensus 41 ~~Ai~aIE~aGG~Vt~ 56 (121)
..+++.||++||+|+.
T Consensus 27 ~e~k~~ie~~Ggkv~~ 42 (113)
T 2cok_A 27 DEVKAMIEKLGGKLTG 42 (113)
T ss_dssp HHHHHHHHHTTCEEES
T ss_pred HHHHHHHHHCCCEEcC
Confidence 7899999999999763
No 22
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=33.56 E-value=29 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.2
Q ss_pred CHHHHHHHHHcCCEEEE
Q 033365 40 TVRAKAAVEAAGGSVRR 56 (121)
Q Consensus 40 S~~Ai~aIE~aGG~Vt~ 56 (121)
-..+++.|+++||+|+.
T Consensus 23 R~e~~~~i~~~Gg~v~~ 39 (92)
T 1l7b_A 23 REEVKALLRRLGAKVTD 39 (92)
T ss_dssp HHHHHHHHHHTTCEEES
T ss_pred HHHHHHHHHHcCCEEeC
Confidence 36789999999999764
No 23
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=32.98 E-value=29 Score=23.49 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCEEEE
Q 033365 41 VRAKAAVEAAGGSVRR 56 (121)
Q Consensus 41 ~~Ai~aIE~aGG~Vt~ 56 (121)
..+++.||++||+|+.
T Consensus 50 ~e~~~~i~~~Gg~v~~ 65 (109)
T 2k6g_A 50 DEAKSLIERYGGKVTG 65 (109)
T ss_dssp HHHHHHHHHTTCEEES
T ss_pred HHHHHHHHHcCCEeeC
Confidence 7889999999999863
No 24
>3tcv_A GCN5-related N-acetyltransferase; GRAM negative coccobacillus, brucellosis, acyl CO-A, arylami transferase; 1.75A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=28.00 E-value=1.7e+02 Score=20.96 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred ccEEEEEEccCHHHHHHHHHcCCEEEE---------------EEec---------HHHHHhhcCCccccccCCC
Q 033365 30 WPIHLEASRVTVRAKAAVEAAGGSVRR---------------VHYN---------KLGLRALLKPEWFEKKGRL 79 (121)
Q Consensus 30 ~pi~Iev~~aS~~Ai~aIE~aGG~Vt~---------------~Yy~---------~l~Lra~l~P~~F~~k~~~ 79 (121)
..|.+.|..-...|+...|++|=+.+- ++|. +..|++.|+|..|...|.-
T Consensus 162 ~~i~l~v~~~N~~s~~lyek~GF~~~G~~r~~~~~~G~~~D~~~~~ll~~ew~~~~~~l~~~l~~~n~~~~g~q 235 (246)
T 3tcv_A 162 RRYEWECHNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAWFSVLDSEWPALKQAYQAWLAPENFDSAGQQ 235 (246)
T ss_dssp SEEEEEEETTCHHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHSGGGBCTTSCB
T ss_pred EEEEEEccCCCHHHHHHHHHCCCEEEEEEEeeEEECCEEEEEEEEEeEHHHHHHHHHHHHHHhcccCCCCCCcE
Confidence 468889999999999999999965432 2221 4569999999999887753
No 25
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.81 E-value=33 Score=23.48 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCEEEE
Q 033365 41 VRAKAAVEAAGGSVRR 56 (121)
Q Consensus 41 ~~Ai~aIE~aGG~Vt~ 56 (121)
..+++.||++||+|+.
T Consensus 40 ~e~~~~i~~~Ggkv~~ 55 (112)
T 2ebu_A 40 DEAKSLIERYGGKVTG 55 (112)
T ss_dssp HHHHHHHHHTTCEECS
T ss_pred HHHHHHHHHcCCEEec
Confidence 7889999999999753
No 26
>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Desulfitobacterium hafniense}
Probab=25.06 E-value=97 Score=26.41 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHcCCEEE--EEEecHHHHHhhcC--CccccccCC
Q 033365 39 VTVRAKAAVEAAGGSVR--RVHYNKLGLRALLK--PEWFEKKGR 78 (121)
Q Consensus 39 aS~~Ai~aIE~aGG~Vt--~~Yy~~l~Lra~l~--P~~F~~k~~ 78 (121)
-++.|.+...++|.+|. .+||++.-++..|. |..|...++
T Consensus 51 ~~~ealeifk~aGa~Vdg~~V~ip~~lVe~al~taP~~ftl~~R 94 (495)
T 2qne_A 51 EYEPALEVFRREGQKVEGKRVYLTREFVESKLKSAPAEFTLHAR 94 (495)
T ss_dssp CCHHHHHHHHHTTCEEETTEEECCHHHHHHHHTTSCSCEEECCS
T ss_pred CCHHHHHHHHHcCCcccCCEEEeCHHHHHHHHHhCCceEEEecC
Confidence 35999999999999887 78999999999998 899986443
No 27
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=23.32 E-value=43 Score=17.50 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=11.4
Q ss_pred cCHHHHHHHHHcCCE
Q 033365 39 VTVRAKAAVEAAGGS 53 (121)
Q Consensus 39 aS~~Ai~aIE~aGG~ 53 (121)
+.-.||++|-++||-
T Consensus 7 aaikaiaaiikaggy 21 (26)
T 2jo4_A 7 AAIKAIAAIIKAGGY 21 (26)
T ss_pred HHHHHHHHHHHcCCc
Confidence 345678889999985
No 28
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=23.20 E-value=43 Score=17.50 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHcCCE
Q 033365 39 VTVRAKAAVEAAGGS 53 (121)
Q Consensus 39 aS~~Ai~aIE~aGG~ 53 (121)
+.-.||++|-++||-
T Consensus 7 aaikaiaaiikaggf 21 (26)
T 2jo5_A 7 AAIKAIAAIIKAGGF 21 (26)
T ss_pred HHHHHHHHHHHcCCc
Confidence 345678888999984
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=23.15 E-value=59 Score=19.82 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCEEEE
Q 033365 41 VRAKAAVEAAGGSVRR 56 (121)
Q Consensus 41 ~~Ai~aIE~aGG~Vt~ 56 (121)
....+.|+..||++..
T Consensus 24 ~~l~~~i~~~GG~~~~ 39 (92)
T 4id3_A 24 LQLHEMIVLHGGKFLH 39 (92)
T ss_dssp HHHHHHHHHTTCEEES
T ss_pred HHHHHHHHHCCCEEEE
Confidence 5688999999999864
Done!