RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033365
         (121 letters)



>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 1   MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
           + TLK A  IG QIE    +    A ++  P+ +   RVT  A+AA+EAAGG +
Sbjct: 89  LNTLKAANIIGIQIEFAKVI---LAGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139


>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 40.0 bits (93), Expect = 9e-06
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 1   MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
              ++D         D V+++G G  +++  + L A   +  A+  VE AGGSV
Sbjct: 90  RVDVRDVVEEADDA-DYVKVLGAG--QVRHELTLIADDFSEGAREKVEGAGGSV 140


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 1   MKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
            +   +A  + ++    V+L+  G  +I   + +     +  A  AVEAAGG V
Sbjct: 86  DRDTLEAYRLVRRKNRPVKLLASG--EISRAVTVHVDAASAAAIKAVEAAGGRV 137


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 14  IEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
           ++ G RL   G  + K P+ + A   +  A   ++AAGG  
Sbjct: 102 LKKGYRLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEP 141


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 27.8 bits (62), Expect = 0.17
 Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 11 GKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 54
           + +    +++G G   ++  + + A   +  A+  ++  G +V
Sbjct: 55 DETVVVPGKVLGSG--VLQKDVTVAAVDFSGTAETKIDQVGEAV 96


>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate
           carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 25.3 bits (55), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 60  NKLGLRALLKPEWFEKKGRLLPRPARPPPKLQDKVDSI 97
           +K+GL A  K  W  +  R   RP +  P +   +D+I
Sbjct: 124 SKMGLDATNK--WPGETQREWGRPIKKDPDVVAHIDAI 159


>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
          Length = 334

 Score = 23.7 bits (50), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 9  AIGKQIEDGVRLM 21
           I K+IEDG+  +
Sbjct: 6  DIAKRIEDGINQV 18


>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 282

 Score = 23.2 bits (49), Expect = 10.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 44  KAAVEAAGGSVRRVH 58
           + AV A  G V  VH
Sbjct: 239 ECAVSAVRGGVGAVH 253


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,383
Number of extensions: 20420
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 10
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)