BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033368
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
           Forming A S- Alkylthiouronium Reaction Intermediate
 pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
           Forming A S- Alkylthiouronium Reaction Intermediate
 pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
           Forming A S- Alkylthiouronium Reaction Intermediate
 pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
           Forming A S- Alkylthiouronium Reaction Intermediate
          Length = 418

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 46  AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
           A + G  +T   R WL + +   +   LIG +A   +PA  G ++  ++ E +G   + F
Sbjct: 96  ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153

Query: 105 PTPPPLTSQF 114
             PP   +QF
Sbjct: 154 LLPPLPNTQF 163


>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
           Forming A S-Alkylthiouronium Reaction Intermediate
 pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
           Forming A S-Alkylthiouronium Reaction Intermediate
 pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
           Forming A S-Alkylthiouronium Reaction Intermediate
 pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
           Forming A S-Alkylthiouronium Reaction Intermediate
          Length = 418

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 46  AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
           A + G  +T   R WL + +   +   LIG +A   +PA  G ++  ++ E +G   + F
Sbjct: 96  ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153

Query: 105 PTPPPLTSQF 114
             PP   +QF
Sbjct: 154 LLPPLPNTQF 163


>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
           L-Arginine
 pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
           L-Arginine
 pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
           L-Arginine
 pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
           L-Arginine
          Length = 418

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 46  AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
           A + G  +T   R WL + +   +   LIG +A   +PA  G ++  ++ E +G   + F
Sbjct: 96  ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153

Query: 105 PTPPPLTSQF 114
             PP   +QF
Sbjct: 154 LLPPLPNTQF 163


>pdb|2ACI|A Chain A, Structure Of D166a Arginine Deiminase
 pdb|2ACI|B Chain B, Structure Of D166a Arginine Deiminase
 pdb|2ACI|C Chain C, Structure Of D166a Arginine Deiminase
 pdb|2ACI|D Chain D, Structure Of D166a Arginine Deiminase
          Length = 418

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 46  AGACGGKVTCFERDWLRT-DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHF 104
           A + G  +T   R WL + +   +   LIG +A   +PA  G ++  ++ E +G   + F
Sbjct: 96  ADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGH--SSF 153

Query: 105 PTPPPLTSQF 114
             PP   +QF
Sbjct: 154 LLPPLPNTQF 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,179,085
Number of Sequences: 62578
Number of extensions: 116512
Number of successful extensions: 212
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)