BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033368
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C4L9N1|MUTL_TOLAT DNA mismatch repair protein MutL OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=mutL PE=3 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 44 RVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAIN 85
RV ACG + F + LR D +G L GWLAP + AIN
Sbjct: 211 RVVQACGAE---FMQAALRIDSEHLGLHLYGWLAPQPLTAIN 249
>sp|O81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana
GN=GH3.5 PE=1 SV=1
Length = 612
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 34 KSPVAARNP----LRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAI-NGKS 88
KSP+ + P L +G GG+ D + + L+ + +P + NGK
Sbjct: 94 KSPILSSKPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKG 153
Query: 89 LTGLFFESIGTELAHFPTPPPLTSQFWSVHF 119
+ LF +S P P LTS + S HF
Sbjct: 154 MYFLFIKSESKTPGGLPARPVLTSYYKSSHF 184
>sp|A2BTR9|GCST_PROMS Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601)
GN=gcvT PE=3 SV=1
Length = 370
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 56 FERD--WLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFP 105
+E D W++ +LN+ + + + A+ GK+ GLF E I + ++H P
Sbjct: 123 YEEDFQWIKNNLNMSEISITNFKKDKVLLALQGKNSFGLFEEWIESSISHIP 174
>sp|A6NHS7|MANS4_HUMAN MANSC domain-containing protein 4 OS=Homo sapiens GN=MANSC4 PE=4
SV=3
Length = 340
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 60 WLR-TDLNVIGFGLIGWLAPSS--IPAINGKSLTGLFFESIGTELAHFPTPPPLTS 112
W R T LN I ++PS+ I + K+++ FFE I T+L+H P PP L S
Sbjct: 200 WARFTSLNESITTKINKVSPSTDFISNPDNKTISP-FFEPIDTKLSHMPVPPGLNS 254
>sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana
GN=NTRC PE=1 SV=2
Length = 529
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 8 SSSPVVGLGSSSLSSPKRTALGSSFVKSP 36
++SP +G+G +S+SSP R + SS + P
Sbjct: 2 AASPKIGIGIASVSSPHRVSAASSALSPP 30
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,725,767
Number of Sequences: 539616
Number of extensions: 1877104
Number of successful extensions: 4922
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4916
Number of HSP's gapped (non-prelim): 13
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)