Query 033368
Match_columns 121
No_of_seqs 28 out of 30
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 21:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gl4_A Nidogen-1, entactin; im 38.1 2.5 8.6E-05 34.0 -2.5 28 68-95 107-135 (285)
2 2wsc_H Photosystem I reaction 16.3 31 0.0011 26.1 0.0 13 9-21 12-24 (144)
3 3j21_C 50S ribosomal protein L 10.4 81 0.0028 26.6 0.9 24 48-76 22-45 (365)
4 3u5e_B 60S ribosomal protein L 9.5 1E+02 0.0034 26.2 1.2 27 48-76 24-50 (387)
5 4a17_B RPL3, ribosomal protein 9.4 1.1E+02 0.0037 26.0 1.3 27 48-76 24-50 (391)
6 3iz5_C 60S ribosomal protein L 9.0 1E+02 0.0035 26.2 1.0 27 48-76 24-50 (389)
7 1avb_A Arcelin-1; lectin-like 7.6 2.3E+02 0.0079 21.0 2.3 78 16-94 20-107 (226)
8 1fat_A Phytohemagglutinin-L; g 7.4 2.4E+02 0.0083 21.3 2.4 77 16-93 20-109 (252)
9 3hgf_A Rhoptry protein fragmen 7.1 1.1E+02 0.0036 22.1 0.2 16 85-100 60-75 (107)
10 2e4g_A Tryptophan halogenase; 7.0 72 0.0025 25.5 -0.7 16 62-77 25-40 (550)
No 1
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=38.07 E-value=2.5 Score=34.02 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=22.3
Q ss_pred eeeeeeeccccCCCc-ccCCCchhhhhHh
Q 033368 68 IGFGLIGWLAPSSIP-AINGKSLTGLFFE 95 (121)
Q Consensus 68 ~~~gliGW~~PSsip-a~~g~SL~glF~~ 95 (121)
...|.|||+-.-.+| +.||-||||-=|.
T Consensus 107 ~ig~~igWlfA~e~~~~~NGfslTgG~F~ 135 (285)
T 1gl4_A 107 PIGGIIGWMFAVEQDGFKNGFSITGGEFT 135 (285)
T ss_dssp HHHHHHHHHTCEECTTCCCHHHHHTTEEE
T ss_pred hhccceeeeeecccCccccceEeeCceEE
Confidence 455999999888886 7899999965443
No 2
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=16.28 E-value=31 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=0.0
Q ss_pred ccceeccccCCCC
Q 033368 9 SSPVVGLGSSSLS 21 (121)
Q Consensus 9 ~stv~gl~~ssls 21 (121)
+.+|-||++||++
T Consensus 12 p~~~kgl~gSs~~ 24 (144)
T 2wsc_H 12 PTTLKGLAGSSIA 24 (144)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4457799999998
No 3
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=10.44 E-value=81 Score=26.59 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=19.3
Q ss_pred cCCCeeeeeccchhccccceeeeeeeecc
Q 033368 48 ACGGKVTCFERDWLRTDLNVIGFGLIGWL 76 (121)
Q Consensus 48 a~~gr~t~F~rdWlr~d~~V~~~gliGW~ 76 (121)
...+|+..|+.| | .|++.||+|+=
T Consensus 22 ~~~~rvks~Pkd----d-~~~L~~F~GYK 45 (365)
T 3j21_C 22 SIVPRIRSWPKE----T-EVRMLGFAGYK 45 (365)
T ss_dssp CSSCCCSCCCCC----C-SSEECCEEEEE
T ss_pred ccCCCccccCCC----C-Cceeeeeeeec
Confidence 345888888876 4 99999999985
No 4
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=9.55 E-value=1e+02 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=19.8
Q ss_pred cCCCeeeeeccchhccccceeeeeeeecc
Q 033368 48 ACGGKVTCFERDWLRTDLNVIGFGLIGWL 76 (121)
Q Consensus 48 a~~gr~t~F~rdWlr~d~~V~~~gliGW~ 76 (121)
...+|+..|+.| ...-.|++.||+|+=
T Consensus 24 ~~~~rvks~Pkd--d~~~~~~L~aF~GYK 50 (387)
T 3u5e_B 24 SIRARVKAFPKD--DRSKPVALTSFLGYK 50 (387)
T ss_dssp CSSCCCCCCCCC--CTTSCCCCSEEEEEE
T ss_pred ccCCCcccCCCC--CCCCCceeeeeeeec
Confidence 345889888876 122479999999984
No 5
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=9.41 E-value=1.1e+02 Score=26.04 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=19.6
Q ss_pred cCCCeeeeeccchhccccceeeeeeeecc
Q 033368 48 ACGGKVTCFERDWLRTDLNVIGFGLIGWL 76 (121)
Q Consensus 48 a~~gr~t~F~rdWlr~d~~V~~~gliGW~ 76 (121)
...||+..|+.| ...-.|++.||+|+=
T Consensus 24 ~~~~rvks~Pkd--d~~~~~~L~aF~GYK 50 (391)
T 4a17_B 24 HHRGRCRSFPKD--DPSKKPHLTAFTGFK 50 (391)
T ss_dssp CSSCCCSSCCCC--CSSSSCEECEEEEEE
T ss_pred ccCCCcccCCCC--CCCCCceEeeeeeec
Confidence 345888888876 122479999999984
No 6
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=8.98 E-value=1e+02 Score=26.16 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred cCCCeeeeeccchhccccceeeeeeeecc
Q 033368 48 ACGGKVTCFERDWLRTDLNVIGFGLIGWL 76 (121)
Q Consensus 48 a~~gr~t~F~rdWlr~d~~V~~~gliGW~ 76 (121)
...||+..|+.| ...-.|++.||+|+=
T Consensus 24 ~~~~rvks~Pkd--d~~~~~~L~aF~GYK 50 (389)
T 3iz5_C 24 RHRGKVKSFPKD--DQQKPCHLTAFLGYK 50 (389)
T ss_dssp SSSCCCSCCCCS--CSSCTTCBSEEEEEE
T ss_pred ccCCCcccCCCC--CCCCCceeeeeeeec
Confidence 345889888876 222478999999984
No 7
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1
Probab=7.59 E-value=2.3e+02 Score=21.05 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=44.0
Q ss_pred ccCCCCCCCccccccC-----cccCcccccchhhhhccCCCeeeeeccch----hccccceeeeeeeeccccCC-CcccC
Q 033368 16 GSSSLSSPKRTALGSS-----FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTDLNVIGFGLIGWLAPSS-IPAIN 85 (121)
Q Consensus 16 ~~ssls~~~~~~l~s~-----f~~~~V~arnpl~~a~a~~gr~t~F~rdW----lr~d~~V~~~gliGW~~PSs-ipa~~ 85 (121)
|.|.+.+...++|+.. ...-++--+.|++......|++..|.-.- ........+=||.=|++|.. .|.-.
T Consensus 20 G~A~v~~~g~l~LT~~~~~~~~~~Gra~y~~Pv~l~~~~~g~vaSFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~ 99 (226)
T 1avb_A 20 GDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLK 99 (226)
T ss_dssp ETCEECTTSCEECSCSSSCCTTCEEEEEESSCEECEEGGGTEEEEEEEEEEEEEEESSTTSCCEEEEEEEEETTCCCCCC
T ss_pred ccEEECCCCEEEeCCCCCCccCCeEEEEeCCCEEeecCCCCCcccEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCC
Confidence 4555555556777744 23345555677777655566665554332 11122345778888999963 45422
Q ss_pred CCchhhhhH
Q 033368 86 GKSLTGLFF 94 (121)
Q Consensus 86 g~SL~glF~ 94 (121)
| ...|||-
T Consensus 100 g-~~LGl~n 107 (226)
T 1avb_A 100 G-RYLGLFN 107 (226)
T ss_dssp G-GGTTTCS
T ss_pred C-Ccccccc
Confidence 2 3467774
No 8
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin; HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1g8w_A*
Probab=7.44 E-value=2.4e+02 Score=21.34 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=44.1
Q ss_pred ccCCCCCCCccccccC--------cccCcccccchhhhhccCCCeeeeeccch----hccccceeeeeeeeccccCCCc-
Q 033368 16 GSSSLSSPKRTALGSS--------FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTDLNVIGFGLIGWLAPSSIP- 82 (121)
Q Consensus 16 ~~ssls~~~~~~l~s~--------f~~~~V~arnpl~~a~a~~gr~t~F~rdW----lr~d~~V~~~gliGW~~PSsip- 82 (121)
|.|.+.+...++|+.. ..+-++--+.|++......|++..|.-.- ........+=||.=|++|...+
T Consensus 20 G~A~v~~~g~l~LT~~~~~~~~~~~~~Gra~y~~Pv~l~d~~tg~vaSFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~~ 99 (252)
T 1fat_A 20 RDASVSSSGQLRLTNLNGNGEPRVGSLGRAFYSAPIQIWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQP 99 (252)
T ss_dssp ETCEECTTSCEECSCCC-CCCCCTTCEEEEEEEEEEECEETTTTEEEEEEEEEEEECCCCSSCBCCEEEEEEEEETTCCC
T ss_pred ccEEECCCCEEEeCCCCCCCccccCCEEEEEECCCEecccCCCCcccceEEEEEEEEeCCCCCCCCCcEEEEEccCCCCC
Confidence 4555554556677643 23355566677777666667766554432 1112234577888899998654
Q ss_pred ccCCCchhhhh
Q 033368 83 AINGKSLTGLF 93 (121)
Q Consensus 83 a~~g~SL~glF 93 (121)
.-.| ...|||
T Consensus 100 ~~~g-~~LGl~ 109 (252)
T 1fat_A 100 KDKG-GFLGLF 109 (252)
T ss_dssp CCSG-GGTTTC
T ss_pred CCCC-cccccc
Confidence 2223 345787
No 9
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=7.12 E-value=1.1e+02 Score=22.12 Aligned_cols=16 Identities=56% Similarity=0.798 Sum_probs=11.9
Q ss_pred CCCchhhhhHhhhhhh
Q 033368 85 NGKSLTGLFFESIGTE 100 (121)
Q Consensus 85 ~g~SL~glF~~SIG~e 100 (121)
-|+||..||.+-|-+|
T Consensus 60 Yg~SL~~LFL~qIdeE 75 (107)
T 3hgf_A 60 YGKSLNKLFLEKIDEE 75 (107)
T ss_dssp HTHHHHHHHHHHC---
T ss_pred HHHhHHHHHHHHHhHH
Confidence 4899999999999876
No 10
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=7.02 E-value=72 Score=25.46 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.1
Q ss_pred ccccceeeeeeeeccc
Q 033368 62 RTDLNVIGFGLIGWLA 77 (121)
Q Consensus 62 r~d~~V~~~gliGW~~ 77 (121)
..|+.|+|.|..||++
T Consensus 25 ~~dVvIVGgG~aGl~a 40 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMA 40 (550)
T ss_dssp CCEEEEECCSHHHHHH
T ss_pred CCcEEEECCCHHHHHH
Confidence 3578999999999973
Done!