Query 033368
Match_columns 121
No_of_seqs 28 out of 30
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 21:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033368.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033368hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gl4a1 d.22.1.2 (A:399-631) D 21.2 3.5 0.00025 30.6 -2.5 32 65-96 58-90 (233)
2 d2bcgg1 c.3.1.3 (G:5-301) Guan 16.4 10 0.00074 22.0 -0.7 15 63-77 6-20 (297)
3 d1d5ta1 c.3.1.3 (A:-2-291,A:38 14.7 12 0.00087 22.3 -0.7 15 63-77 7-21 (336)
4 d1rp1a2 c.69.1.19 (A:1-336) Pa 14.3 11 0.00082 28.4 -1.1 27 92-118 16-43 (337)
5 d1s5da_ d.166.1.1 (A:) Cholera 12.9 22 0.0016 26.3 0.3 16 100-115 163-179 (235)
6 d1lucb_ c.1.16.1 (B:) Bacteria 12.0 24 0.0017 24.4 0.2 43 23-67 66-116 (320)
7 d1tu1a_ d.107.1.3 (A:) Hypothe 9.4 1.3E+02 0.0091 18.5 3.1 46 54-99 13-63 (144)
8 d1t3ta6 d.139.1.1 (A:430-616) 9.3 46 0.0034 23.0 0.9 36 12-47 16-51 (187)
9 d2jfga1 c.5.1.1 (A:1-93) UDP-N 9.3 28 0.0021 20.1 -0.2 16 59-74 2-17 (93)
10 d1c0pa1 c.4.1.2 (A:999-1193,A: 9.3 22 0.0016 21.7 -0.8 14 63-76 7-20 (268)
No 1
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.18 E-value=3.5 Score=30.63 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=24.7
Q ss_pred cceeeeeeeeccccCCCc-ccCCCchhhhhHhh
Q 033368 65 LNVIGFGLIGWLAPSSIP-AINGKSLTGLFFES 96 (121)
Q Consensus 65 ~~V~~~gliGW~~PSsip-a~~g~SL~glF~~S 96 (121)
+.+...+.|||+-=-.+| +.||-||||-=|..
T Consensus 58 ~L~~ig~~igWlFA~e~~~a~NGfslTGG~F~~ 90 (233)
T d1gl4a1 58 PLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTR 90 (233)
T ss_dssp TCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEE
T ss_pred hhhhhcCceeeeEEeecCCccCceEeeeeEEEE
Confidence 356677999999767775 88999999865544
No 2
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.37 E-value=10 Score=21.96 Aligned_cols=15 Identities=27% Similarity=0.467 Sum_probs=11.8
Q ss_pred cccceeeeeeeeccc
Q 033368 63 TDLNVIGFGLIGWLA 77 (121)
Q Consensus 63 ~d~~V~~~gliGW~~ 77 (121)
-|+.|||.|+.|-++
T Consensus 6 yDviViGaG~~Gl~~ 20 (297)
T d2bcgg1 6 YDVIVLGTGITECIL 20 (297)
T ss_dssp CSEEEECCSHHHHHH
T ss_pred CCEEEECcCHHHHHH
Confidence 377889999888873
No 3
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.72 E-value=12 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.6
Q ss_pred cccceeeeeeeeccc
Q 033368 63 TDLNVIGFGLIGWLA 77 (121)
Q Consensus 63 ~d~~V~~~gliGW~~ 77 (121)
=|+.|||.|..|.++
T Consensus 7 yDvvIIGaG~aGl~a 21 (336)
T d1d5ta1 7 YDVIVLGTGLTECIL 21 (336)
T ss_dssp CSEEEECCSHHHHHH
T ss_pred CCEEEECCCHHHHHH
Confidence 478999999999874
No 4
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}
Probab=14.35 E-value=11 Score=28.38 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=20.7
Q ss_pred hhHhhhhhhhcCCCCCCC-CCCceeEEe
Q 033368 92 LFFESIGTELAHFPTPPP-LTSQFWSVH 118 (121)
Q Consensus 92 lF~~SIG~eLAhFPtgPa-l~d~FWL~~ 118 (121)
-|..++...|+-+|..|. ++-+||||-
T Consensus 16 Pf~~~~~rp~~~~P~~P~~i~~~F~LyT 43 (337)
T d1rp1a2 16 PWAGTAIRPLKVLPWSPERIGTRFLLYT 43 (337)
T ss_dssp TTSSSSSSCSCCCCCCHHHHTCEEEEEC
T ss_pred CCcCcccCccCCCCCCccccCCEEEEEc
Confidence 355666777888999887 577999984
No 5
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=12.89 E-value=22 Score=26.32 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=11.0
Q ss_pred hhcCCCCC-CCCCCcee
Q 033368 100 ELAHFPTP-PPLTSQFW 115 (121)
Q Consensus 100 eLAhFPtg-Pal~d~FW 115 (121)
+||+||.+ ||-.+.+|
T Consensus 163 qla~f~~~~paw~~~~~ 179 (235)
T d1s5da_ 163 GLAGFPPEHRAWREEPW 179 (235)
T ss_dssp GGCCCCTTCGGGGSTTG
T ss_pred hhccCCCCCcccccccc
Confidence 99999985 44444444
No 6
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi [TaxId: 669]}
Probab=12.01 E-value=24 Score=24.37 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCccccccCcccCcccccchhhhhc-------cCCCeeee-eccchhccccce
Q 033368 23 PKRTALGSSFVKSPVAARNPLRVAG-------ACGGKVTC-FERDWLRTDLNV 67 (121)
Q Consensus 23 ~~~~~l~s~f~~~~V~arnpl~~a~-------a~~gr~t~-F~rdWlr~d~~V 67 (121)
-+++.|.++-+..+. |+|++.|+ .|+||+.. +-+-|...+...
T Consensus 66 T~~I~lg~~v~~~~~--~~P~~~A~~~atld~ls~GR~~lG~g~G~~~~~~~~ 116 (320)
T d1lucb_ 66 TKNAKVASLNHVITT--HHPVRVAEEACLLDQMSEGRFAFGFSDCEKSADMRF 116 (320)
T ss_dssp CSSSEEEEEEEECTT--SCHHHHHHHHHHHHHHTTSCEEEEEECCCCHHHHHH
T ss_pred cccceeeeeeccCcc--CChHHHHHHHHHHHHhcCCCceeeeecccccccccc
Confidence 568888888666554 89998874 58898875 555554444433
No 7
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.44 E-value=1.3e+02 Score=18.46 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=28.4
Q ss_pred eeeccchhccccceeeeeeeeccccCCC-----cccCCCchhhhhHhhhhh
Q 033368 54 TCFERDWLRTDLNVIGFGLIGWLAPSSI-----PAINGKSLTGLFFESIGT 99 (121)
Q Consensus 54 t~F~rdWlr~d~~V~~~gliGW~~PSsi-----pa~~g~SL~glF~~SIG~ 99 (121)
..+|+.|+.+..||+.++--+=-.|.|| +.-.|.+|.-..-..+..
T Consensus 13 ~~lP~gw~d~t~ni~~~~~~~~~~~~~lvIsr~~l~~~~~l~~~~~~~~~~ 63 (144)
T d1tu1a_ 13 LEIPDAWQDQSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLEN 63 (144)
T ss_dssp EEEETTSEECCBEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred EeCCCCceeCcceEEEecCCCCCcceEEEEEeecCCCCCCHHHHHHHHHHH
Confidence 3679999999888876543221122222 455788887766655543
No 8
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=9.32 E-value=46 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=13.3
Q ss_pred eeccccCCCCCCCccccccCcccCcccccchhhhhc
Q 033368 12 VVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAG 47 (121)
Q Consensus 12 v~gl~~ssls~~~~~~l~s~f~~~~V~arnpl~~a~ 47 (121)
=.|+||++.||......+..--++.|+.-||.+.+.
T Consensus 16 rdGigGas~sS~~~~~~~~~~~~~aVQ~gdP~~ek~ 51 (187)
T d1t3ta6 16 NIGLGGGAASSMASGQSDADLDFASVQRDNPEMERR 51 (187)
T ss_dssp SCC-------------------CTTCCCCCHHHHHH
T ss_pred ccCCCcHHHhhhhhccccccccccccccCCHHHHHH
Confidence 468999988864322233332357899999998765
No 9
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=9.30 E-value=28 Score=20.14 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=12.9
Q ss_pred chhccccceeeeeeee
Q 033368 59 DWLRTDLNVIGFGLIG 74 (121)
Q Consensus 59 dWlr~d~~V~~~gliG 74 (121)
||..+...|+|+|.-|
T Consensus 2 ~~~~K~v~ViGlG~sG 17 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTG 17 (93)
T ss_dssp CCTTCCEEEECCSHHH
T ss_pred CcCCCEEEEEeECHHH
Confidence 6777888888888776
No 10
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Probab=9.28 E-value=22 Score=21.72 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=10.7
Q ss_pred cccceeeeeeeecc
Q 033368 63 TDLNVIGFGLIGWL 76 (121)
Q Consensus 63 ~d~~V~~~gliGW~ 76 (121)
+++.|||.|+.|..
T Consensus 7 ~kVvVIGaGiaGl~ 20 (268)
T d1c0pa1 7 KRVVVLGSGVIGLS 20 (268)
T ss_dssp CEEEEECCSHHHHH
T ss_pred CcEEEECccHHHHH
Confidence 46778888888876
Done!