BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033369
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 151 bits (382), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 84/109 (77%)
Query: 5 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLL 64
ENLPP++I+ + KE+ +L PP+GIKV N++D + + IEGP GTPY G+FRMKLL
Sbjct: 8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67
Query: 65 LSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
L DFP SPPKGYFLTKIFHPN+ NGEICVN LK+DW LG+RHVL+
Sbjct: 68 LGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLL 116
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 59/101 (58%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++AKEL L+ PP G DD A I GPA +PY GVF + + D+P
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI NG IC++ LK W+P+L L VL+
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLL 105
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KE + L P GI +DD+ IEGP +PYE+G+F ++L L D+P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK FLTKI+HPNI G IC++ LK +W+P+L +R VL+
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLL 106
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 63/101 (62%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KE + L P GI +DD+ IEGP +PYE+G+F ++L L D+P
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK FLTKI+HPNI G IC++ LK +W+P+L +R VL+
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLL 108
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL+ L PP G DD A I GP+ +PY+ GVF + + D+P
Sbjct: 7 ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 67 FKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 109
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE ++L PP GI +++ I GP GTPYE G ++++L L +P
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK FLTKI+HPNI G IC++ LK W+P+L +R VL+
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 104
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE ++L PP GI +++ I GP GTPYE G ++++L L +P
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK FLTKI+HPNI G IC++ LK W+P+L +R VL+
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 104
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KE + L P GI +DD+ IEGP +PYE+G+F ++L L D+P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK FLTKI+HPNI G I ++ LK +W+P+L +R VL+
Sbjct: 66 APKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLL 106
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL+ L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 107
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
+L KELK ++ + I + D +F I+GP GTPYE G F + + + +D+P++P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 74 PKGYFLTKIFHPNIATN-GEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPNI++ G IC++ LK +W+P+L +R L+
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALL 127
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDF 69
+ +K++ KEL L PP G DD A I GP +PY+ GVF + + D+
Sbjct: 3 SALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 70 PHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLL 106
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 12 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 72 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 114
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 12 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 72 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 114
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 103
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KE + L P GI +DD+ IEGP +PYE+G+F ++L L D+P
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK FLTKI+HP I G I ++ LK +W+P+L +R VL+
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLL 106
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ +EL L + PP G DD A I GPA +PY GVF + + D+P
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLL 104
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 104
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 70 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 112
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 7 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 67 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 109
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 122
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W P+L + VL+
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLL 106
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L + PP G DD A I GP +PY GVF + + D+P
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSS 116
PPK F TKI+HPNI + G IC++ LK W+P+L + VL+ S
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSIS 127
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 62/100 (62%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
++L ++ K L E PP G+ +D+ T A I GP TP+E+G F++ L + ++P+
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
PP F++K+FHPN+ +G IC++ L+ W+P+ + +L
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL 106
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP + Y+ GVF + + D+P
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 80 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 122
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 63/100 (63%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
++L ++ K L E PP G+ ++++ A I GP GTP+E+G F++ + S ++P+
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
PP FL+K+FHPN+ +G IC++ L+ W+P+ + +L
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSIL 106
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP + Y+ GVF + + D+P
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 110
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 62/100 (62%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
++L ++ K L E PP G+ +D+ T A I GP TP+E+G F++ L + ++P+
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
PP F++K+FHPN+ +G IC++ L+ W+P+ + +L
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAIL 109
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP + Y+ GVF + + D+P
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 64 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLL 106
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A GP +PY+ GVF + + D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG IC++ L+ W+P+L + VL+
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLL 106
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 58/102 (56%)
Query: 12 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH 71
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 72 SPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 106
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
++L ++ K + E P G+ D+ A I GPA TPYE+G FR+ L ++P+
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
PP FL+++FHPN+ NGEIC++ L+ W P+ + +L
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASIL 106
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
++++ KEL+ + + PP G DD A I GP +PY+ G+F + + D+P
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P+ F+TK++HPNI NG IC++ LK W+P+L L VL+
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLL 107
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLL 65
N+ IK+ KE+ +E+ IKV + D++F+ + +I GP TPYE G +++++ +
Sbjct: 5 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 64
Query: 66 SHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHV 111
+P +PPK F+TKI+HPNI++ G IC++ LK W ++ LR V
Sbjct: 65 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLL 65
N+ IK+ KE+ +E+ IKV + D++F+ + +I GP TPYE G +++++ +
Sbjct: 20 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 79
Query: 66 SHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHV 111
+P +PPK F+TKI+HPNI++ G IC++ LK W ++ LR V
Sbjct: 80 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 126
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLL 65
N+ IK+ KE+ +E+ IKV + D++F+ + +I GP TPYE G +++++ +
Sbjct: 4 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 63
Query: 66 SHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHV 111
+P +PPK F+TKI+HPNI++ G IC++ LK W ++ LR V
Sbjct: 64 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE + L P GIK ++ + I GP +P+E G F+++L L ++P +
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPN+ G IC++ LK W+P+L +R VL+
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 106
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE + L P GIK ++ + I GP +P+E G F+++L L ++P +
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPN+ G IC++ LK W+P+L +R VL+
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 104
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K+L ++ K L + PP GI D++ A I GP TP++ G F++ L S D+P+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
PP F++++FHPNI +G IC++ L+ W+P + +L
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL 106
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE + L P GIK ++ + I GP +P+E G F+++L L ++P +
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPN+ G IC++ LK W+P+L +R VL+
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 108
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLL 65
N+ IK+ KE+ +E+ IKV + D++F+ + +I GP TPYE G +++++ +
Sbjct: 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 115
Query: 66 SHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHV 111
+P +PPK F+TKI+HPNI++ G IC++ LK W ++ LR V
Sbjct: 116 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE + L P GIK ++ + I GP +P+E G F+++L L ++P +
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPN+ G IC++ LK W+P+L +R VL+
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 111
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
+++ KE + L P GIK ++ + I GP +P+E G F+++L L ++P +
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PK F+TKI+HPN+ G IC++ LK W+P+L +R VL+
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 109
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLL 65
N+ IK+ KE+ +E+ IKV + D++F+ + +I GP TPYE G +++++ +
Sbjct: 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKI 66
Query: 66 SHDFPHSPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHV 111
+P +PPK F+TKI+HPNI++ G IC++ LK W ++ LR V
Sbjct: 67 PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 104
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLL 107
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
+L +EL L PP GI + D + A I G A TPYE GVF++++++ +P P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 74 PKGYFLTKIFHPNIATNGEICVNTL----KKDWNPSLGLRHVL 112
P+ FLT I+HPNI + G IC++ L K W PSL + VL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVL 110
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLL 122
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KEL L PP G DD A I GP +PY+ GVF + + D+P
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLL 103
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP + G DD A I GP +PY+ GVF + + D+P
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+HP I +NG I ++ L+ W+P+L + VL+
Sbjct: 62 FKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLL 104
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
+K++ KEL L PP + G DD A I GP + Y+ GVF + + D+P
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TKI+HPNI +NG I ++ L+ W+P+L + VL+
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLL 110
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%)
Query: 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFR 60
M+ N L K++ KEL + PP G D+ + I GP G+ YE GVF
Sbjct: 39 MSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF 98
Query: 61 MKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
+ + + ++P PPK F T+I+H NI + G IC++ LK +W+P+L + VL+
Sbjct: 99 LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 151
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K++ KEL + PP G D+ + I GP G+ YE GVF + + S D+P
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
PPK F T+I+H NI + G IC++ LK +W+P+L + VL+
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLL 106
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 10 NVIKQLA--KELKSLDESPP-------EGIKVGVNDDDFSTIFADIEGPAGTPYENGVFR 60
++K+LA ++L+ +S P G+ + D I GP GTPYE G F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 61 MKLLLSHDFPHSPPKGYFLTKIFHPNIATN-GEICVNTLKKDWNPSLGLRHVLI 113
+ +++ D+P++PPK F+TKI+HPNI++ G IC++ LK +W+P+L +R L+
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALL 149
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 9 PNVIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSH 67
P+ K L ELK L E P EG +V + D+ D I GP T YE G F+ +L
Sbjct: 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 65
Query: 68 DFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
D+P+SPP FLTK++HPNI G++C++ L + WNP+ +R +L+
Sbjct: 66 DYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 124
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 9 PNVIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSH 67
P+ K L ELK L E P EG +V + D+ D I GP T YE G F+ +L
Sbjct: 3 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPI 62
Query: 68 DFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
D+P+SPP FLTK++HPNI G++C++ L + WNP+ +R +L+
Sbjct: 63 DYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 121
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+A +G +C++ L+ KDW P++ ++ +L+
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 13 KQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH 71
K++ KE++++ + P I + V++ D + GP GTPYE G F + + + ++P
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 72 SPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TK++HPNI++ G IC++ LK W+P + L+ LI
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALI 106
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 66 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 115
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 67 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 67 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 116
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 114
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 10 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G +C++ L+ KDW P++ ++ +L+
Sbjct: 70 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILL 119
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 13 KQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH 71
K++ KE++++ + P I + V++ D + GP GTPYE G F + + + ++P
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 72 SPPKGYFLTKIFHPNIAT-NGEICVNTLKKDWNPSLGLRHVLI 113
PPK F TK++HPNI++ G IC++ L+ W+P + L+ LI
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALI 107
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIF-ADIEGPAGTPYENGVFRMKLLLSHDFPH 71
K+L KEL+ L + P GI G ++ I+ I+GP TPY +GVF KL D+P
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 72 SPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
SPPK F I HPNI NGE+C++ L ++ W+P + +L+
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%)
Query: 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDF 69
+V K+L +EL++L S GI + D+ A ++GP T YE+ +++ L D+
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70 PHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P+ PP F T +HPN+ +G IC++ LK++W S +R +L+
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILL 112
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHP + +G +C++ L+ KDW P++ ++ +L+
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILL 117
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 4 NENLPPNVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMK 62
+E + +K+L E K L +PPEGI G +N+++F A I GP T +E GVF
Sbjct: 3 SEFMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAI 62
Query: 63 LLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLR 109
L D+P SPPK F ++FHPNI +G +C++ L + W+P +
Sbjct: 63 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 110 HVLI 113
+L+
Sbjct: 123 KILL 126
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 15 LAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
L ++L L+++P EG G ++D+D I GP T YE GVF+ L D+P P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 74 PKGYFLTKIFHPNIATNGEICVNTL 98
PK F+T+I+HPN+ NG++C++ L
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISIL 106
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 10 NVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHD 68
+K+L E K L +PPEGI G +N+++F A I GP T +E GVF L D
Sbjct: 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 62
Query: 69 FPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
+P SPPK F ++FHPNI +G +C++ L + W+P + +L+
Sbjct: 63 YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 120
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 10 NVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHD 68
+K+L E K L +PPEGI G +N+++F A I GP T +E GVF L D
Sbjct: 7 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 66
Query: 69 FPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
+P SPPK F ++FHPNI +G +C++ L + W+P + +L+
Sbjct: 67 YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 124
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 10 NVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHD 68
+K+L E K L +PPEGI G +N+++F A I GP T +E GVF L D
Sbjct: 6 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLD 65
Query: 69 FPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLI 113
+P SPPK F ++FHPNI +G +C++ L + W+P + +L+
Sbjct: 66 YPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 123
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G + ++ L+ KDW P++ ++ +L+
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILL 114
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 11 VIKQLAKELKSLDESPPEG-IKVGVNDDDFSTIFADIE----GPAGTPYENGVFRMKLLL 65
+ +LA+E K+ + P G + V + D + + E G GTP+E G+F++++L
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 66 SHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
D+P SPPK F +FHPN+ +G + ++ L+ KDW P++ ++ +L+
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILL 114
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
V K+L +EL +L S +GI D+ I G AGT YE+ +++ L +P
Sbjct: 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 90
Query: 71 HSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
++ P FLT +HPN+ T G I ++ LK+ W+ +R +L+
Sbjct: 91 YNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILL 133
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 13 KQLAKELKSLDESPPEGIKVGVN--DDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFP 70
K+L KEL +L PP G+ + + + D+EG GT YE F++ S +P
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 71 HSPPKGYFLTKIF--HPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P+ F + HP++ +NG IC++ L +DW+P+L ++ V +
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCL 129
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 15 LAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
L K+L + P +G G V+D+D + GP T YE G F+ L D+P P
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 74 PKGYFLTKIFHPNIATNGEICVNTL 98
PK F+++I+HPNI G +C++ L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISIL 92
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 13 KQLAKELKSLD--ESPPEGIKVGVN---DDDFSTIFADIEGPAGTPYENGVFRMKLLLSH 67
K + K L S D +P GI +N + D S A I GP+ TPYEN FR+ + +
Sbjct: 16 KVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS 75
Query: 68 DFPHSPPKGYFLT-KIFHPNI-ATNGEICVNTLK-KDWNPSLGLRHVL 112
+P +PPK F+ I H N+ + GEIC+N LK ++W P L H +
Sbjct: 76 SYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCV 123
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
++ KEL + +PP + V+ ++ G T Y N V+++K++ D+P P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 74 PKGYFLTK-IFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P YFL K H ++ +NG+IC++ L D+NPSL + +++
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVL 110
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 13 KQLAKELKSLD--ESPPEGIKVGVN---DDDFSTIFADIEGPAGTPYENGVFRMKLLLSH 67
K + K L S D +P GI +N + D S A I GP+ TPYEN FR+ + +
Sbjct: 16 KVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS 75
Query: 68 DFPHSPPKGYFLT-KIFHPNI-ATNGEICVNTLK-KDWNPSLGLRHVL 112
+P +PPK F+ I H N+ + GEIC+N LK ++W P L H +
Sbjct: 76 SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCV 123
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 13 KQLAKELKSLD--ESPPEGIKVGVN---DDDFSTIFADIEGPAGTPYENGVFRMKLLLSH 67
K + K L S D +P GI +N + D S A I GP+ TPYEN FR+ + +
Sbjct: 16 KVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS 75
Query: 68 DFPHSPPKGYFLT-KIFHPNI-ATNGEICVNTLK-KDWNPSLGLRHVL 112
+P +PPK F+ I H N+ + GEIC+N LK ++W P L H +
Sbjct: 76 SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCV 123
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
++ KEL + ++PP + V+ + G T Y N V+++K++ ++P P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 74 PKGYFLTK-IFHPNIATNGEICVNTLKKDWNPSLGLRHVLI 113
P YFL K H ++ +NG+IC++ L D+NPSL + +++
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLIL 124
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
++ KEL+ L + PP ++ +DD ++ + P PY F +++ ++P P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 74 PKGYFLTKIFHPNIATNGEICVNTL-KKDWNPSLGLRHVL 112
P F TKI+HPN+ NG+IC+ + ++W P VL
Sbjct: 65 PMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVL 104
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73
++ KEL+ L + PP ++ +DD ++ + P PY F +++ ++P P
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 67
Query: 74 PKGYFLTKIFHPNIATNGEICVNTL-KKDWNPSLGLRHVL 112
P F TKI+HPN+ NG+IC+ + ++W P VL
Sbjct: 68 PMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVL 107
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 14 QLAKELKSLDESPPEGIKVGVN----DDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDF 69
+L ++L SLD P + V + D S I P Y G L + +
Sbjct: 33 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92
Query: 70 PHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVL 112
P PPK L KIFHPNI G +C+N L++DW+P+L L+ ++
Sbjct: 93 PIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSII 135
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 37 DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICV 95
D + + + +GP GTPYE+G + + + L D+P P F +I HPN+ +G +C+
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 96 NTLKKDWNPSLGLRHVLIV 114
+ + + W P L ++ V
Sbjct: 95 DVINQTWTPMYQLENIFDV 113
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38 DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVN 96
DF +F GP GT YE G++++ + L D+P + P F+ K+ HPN+ +G +C++
Sbjct: 30 DFDVMF---HGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLD 86
Query: 97 TLKKDWNPSLGLRHVLIV 114
+ + W P L +V V
Sbjct: 87 VINQTWTPLYSLVNVFEV 104
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 12 IKQLAKELKSLDESPPEG-----IKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLS 66
+++L +E K + P G +K D A I G GT + GV+ + +
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 67 HDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVSSD 117
+++P PPK F +HPN+ +G IC++ L +DW P++ L+ +++ D
Sbjct: 66 NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQD 118
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 12 IKQLAKELKSLDESPPEG-----IKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLS 66
+++L +E K + P G +K D A I G GT + GV+ + +
Sbjct: 8 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 67 HDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK--KDWNPSLGLRHVLIVSSD 117
+++P PPK F +HPN+ +G IC++ L +DW P++ L+ +++ D
Sbjct: 68 NEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQD 120
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 27 PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86
P+ + +D D F + P Y++G F + +PH PPK T ++HPN
Sbjct: 21 PKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPN 80
Query: 87 IATNGEICVNTLKKDWNPSLGLRHVL 112
I G +C+N L++DW P L + ++
Sbjct: 81 IDLEGNVCLNILREDWKPVLTINSII 106
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 48 GPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI-ATNGEICVNTLKKDWNPSL 106
GP GTPYE GV+++++ L +P P F+ KIFHPNI +G +C++ + + W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 107 GLRHVL 112
L ++
Sbjct: 119 DLTNIF 124
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 13 KQLAKELKSLDESPPEGIK-VGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH 71
++L KEL+ + + + + + V++ + T + + P PY+ G FR+++ ++P
Sbjct: 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLT-WQGLIVPDNPPYDKGAFRIEINFPAEYPF 63
Query: 72 SPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVL 112
PPK F TKI+HPNI G++C+ + ++W P+ V+
Sbjct: 64 KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVI 105
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 13 KQLAKELKSLDESPPEGIK-VGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH 71
++L KEL+ + + + + + V++ + T + + P PY+ G FR+++ ++P
Sbjct: 7 RRLMKELEEIRKCGMKNFRNIQVDEANLLT-WQGLIVPDNPPYDKGAFRIEINFPAEYPF 65
Query: 72 SPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVL 112
PPK F TKI+HPNI G++C+ + ++W P+ V+
Sbjct: 66 KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVI 107
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 46 IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKD--WN 103
I G T +E G++++ + ++P PPK F +FHPN+ +G +C++ L ++ W
Sbjct: 51 IPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWK 110
Query: 104 PSLGLRHVLIVSSD 117
P++ ++ +L+ D
Sbjct: 111 PAITIKQILLGIQD 124
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 27 PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86
P+ + +D D F + P Y++G F + +PH PPK T ++HPN
Sbjct: 41 PKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100
Query: 87 IATNGEICVNTLKKDWNPSLGLRHVL 112
I G + +N L++DW P L + ++
Sbjct: 101 IDLEGNVALNILREDWKPVLTINSII 126
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K L KE+ L+ + P KV D + F P Y+ G F+ + + +
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKD------WNPSLGLRHVL 112
PPK LTKI+HPNI GEIC++ L++ W P+ L+ V+
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHS 72
K L KE+ L+ + P KV D + F P Y+ G F+ + + +
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 73 PPKGYFLTKIFHPNIATNGEICVNTLKKD------WNPSLGLRHVL 112
PPK LTKI+HPNI GEIC++ L++ W P+ L+ V+
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 46 IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK-----IFHPNIATNGEICVNTL-- 98
I GPA TPY NG F + D+P SPP T F+PN+ +G++C++ L
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 99 -----KKDWNPSLGLRHVLIVS 115
++ WNP ++VS
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVS 197
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 13 KQLAKELKSLDE------------SPPEGIKVGVNDDDFSTIFADIEGPAGTPY--ENGV 58
K++ K+LK L E SP V+ D ++ PA + Y
Sbjct: 11 KRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNT 70
Query: 59 FRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDG 118
+++ +L S D+PH PP F+T ++ P + G IC + W P V+ + D
Sbjct: 71 YQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDR 130
Query: 119 NFC 121
F
Sbjct: 131 VFS 133
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 28 EGIKVGVNDDD---FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84
EG+ G+ D S I G GT +EN ++ + + ++P SPP F TKI
Sbjct: 44 EGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 103
Query: 85 PNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
+ G + N L K+WN + + +LI
Sbjct: 104 SCVDNCGRVIKNNLHILKNWNRNYTIETILI 134
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 28 EGIKVGVNDDD---FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84
EG+ G+ D S I G GT +EN ++ + + ++P SPP F TKI
Sbjct: 40 EGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99
Query: 85 PNIATNGEICVNTLK--KDWNPSLGLRHVLI 113
+ G + N L K+WN + + +LI
Sbjct: 100 SCVDNCGRVIKNNLHILKNWNRNYTIETILI 130
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 15 LAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPP 74
L ++ L E+ +GI +D +IEG + ++ VF++ + + ++ ++PP
Sbjct: 28 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP 87
Query: 75 KGYFLTKIFHPNI-ATNGEICVNTLK--KDWNPSLGLRHVLI 113
F+T FHPN+ G+ C++ L + WN + L +L+
Sbjct: 88 VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILL 129
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 46 IEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN--IATNGEICVNTLK---K 100
+ GP TPYE G + KL+ +FP PP Y +T PN N +C++
Sbjct: 50 VRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPD 105
Query: 101 DWNPSLGLRHVL 112
WNP+ + +L
Sbjct: 106 TWNPAWSVSTIL 117
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 27 PEGIKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF 83
PE G+ D D T+ I GP + +EN ++ + + ++P SPPK F++KI
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 82
Query: 84 HPNI-ATNGEICVN--TLKKDWNPSLGLRHVLI 113
P + T GE+ + TL +DW + + +L+
Sbjct: 83 LPCVNPTTGEVQTDFHTL-RDWKRAYTMETLLL 114
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 27 PEGIKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF 83
PE G+ D D T+ I GP + +EN ++ + + ++P SPPK F++KI
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83
Query: 84 HPNI-ATNGEICVN--TLKKDWNPSLGLRHVLI 113
P + T GE+ + TL +DW + + +L+
Sbjct: 84 LPCVNPTTGEVQTDFHTL-RDWKRAYTMETLLL 115
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 70 PHSPPKGYFLTKIFHPNI-ATNGEI---CVNTLKKDWNPSLGLRHVL 112
P +PP F+TKI + ++NG + ++ L K W S ++ VL
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVL 116
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 70 PHSPPKGYFLTKIFHPNI-ATNGEI---CVNTLKKDWNPSLGLRHVL 112
P +PP F+TKI + ++NG + ++ L K W S ++ VL
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVL 134
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 70 PHSPPKGYFLTKIFHPNI-ATNGEI---CVNTLKKDWNPSLGLRHVL 112
P +PP F+TKI + ++NG + ++ L K W S ++ VL
Sbjct: 99 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVL 144
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 70 PHSPPKGYFLTKI 82
P +PP F+TKI
Sbjct: 74 PEAPPSVRFVTKI 86
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 70 PHSPPKGYFLTKI 82
P +PP F+TKI
Sbjct: 68 PEAPPSVRFVTKI 80
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 70 PHSPPKGYFLTKI 82
P +PP F+TKI
Sbjct: 79 PEAPPSVRFVTKI 91
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 14 QLAKELKSLDESPPEG-IKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDF 69
+L +EL+ + +G + G+ DD+ T+ I GP T YEN ++ +K+ +
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 70 PHSPPKGYFLTKI 82
P +PP F+TKI
Sbjct: 69 PEAPPSVRFVTKI 81
>pdb|1RQS|A Chain A, Nmr Structure Of C-Terminal Domain Of Ribosomal Protein
L7 From E.Coli
pdb|1CTF|A Chain A, Structure Of The C-Terminal Domain Of The Ribosomal
Protein L7L12 FROM ESCHERICHIA COLI AT 1.7 ANGSTROMS
Length = 74
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYE 55
KE K L ES P +K GV+ DD + +E AG E
Sbjct: 35 KEAKDLVESAPAALKEGVSKDDAEALKKALE-EAGAEVE 72
>pdb|2BCW|B Chain B, Coordinates Of The N-Terminal Domain Of Ribosomal
Protein L11,C-Terminal Domain Of Ribosomal Protein
L7L12 AND A Portion Of The G' Domain Of Elongation
Factor G, As Fitted Into Cryo-Em Map Of An Escherichia
Coli 70sEf- GGdpFusidic Acid Complex
Length = 68
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYE 55
KE K L ES P +K GV+ DD + +E AG E
Sbjct: 29 KEAKDLVESAPAALKEGVSKDDAEALKKALE-EAGAEVE 66
>pdb|2XTG|L Chain L, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|L Chain L, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3SGF|J Chain J, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3SGF|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3SGF|L Chain L, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3SGF|M Chain M, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|J Chain J, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3UOS|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3UOS|L Chain L, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3UOS|M Chain M, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 121
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYE 55
KE K L ES P +K GV+ DD + +E AG E
Sbjct: 82 KEAKDLVESAPAALKEGVSKDDAEALKKALE-EAGAEVE 119
>pdb|2GYA|3 Chain 3, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYA|5 Chain 5, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|3 Chain 3, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
pdb|2GYC|5 Chain 5, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 119
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYE 55
KE K L ES P +K GV+ DD + +E AG E
Sbjct: 80 KEAKDLVESAPAALKEGVSKDDAEALKKALE-EAGAEVE 117
>pdb|1RQU|A Chain A, Nmr Structure Of L7 Dimer From E.Coli
pdb|1RQU|B Chain B, Nmr Structure Of L7 Dimer From E.Coli
pdb|1RQV|A Chain A, Spatial Model Of L7 Dimer From E.Coli With One Hinge
Region In Helical State
pdb|1RQV|B Chain B, Spatial Model Of L7 Dimer From E.Coli With One Hinge
Region In Helical State
Length = 120
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 KELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYE 55
KE K L ES P +K GV+ DD + +E AG E
Sbjct: 81 KEAKDLVESAPAALKEGVSKDDAEALKKALE-EAGAEVE 118
>pdb|2B81|A Chain A, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|B Chain B, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|C Chain C, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
pdb|2B81|D Chain D, Crystal Structure Of The Luciferase-Like Monooxygenase
From Bacillus Cereus
Length = 323
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 14 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADI---EGPAGTPYENGVFRMKLLLSHDFP 70
++AKE+ +LD+ PE I +GV+ D F + G + ++ +L +FP
Sbjct: 114 RVAKEIATLDQLFPERIXLGVSSGDRRADFKALGVSHETRGEKFREAFAYLEEILYKNFP 173
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 58 VFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNP 104
++R+ FP PP F+T + N + G V + D+NP
Sbjct: 77 LYRLDAFRGKPFPEKPPNDVFVTAM-TGNFESKGSAVVLSAVLDYNP 122
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 46 IEGPAGTPYENGVFRMKLLLSHDFPHSPPKG 76
I PAG ++ G+ + + LSH++ + P G
Sbjct: 174 IASPAGAYFKGGIKPVSVWLSHEYVRASPGG 204
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 46 IEGPAGTPYENGVFRMKLLLSHDFPHSPPKG 76
I PAG ++ G+ + + LSH++ + P G
Sbjct: 173 IASPAGAYFKGGIKPVSVWLSHEYVRASPGG 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,120,582
Number of Sequences: 62578
Number of extensions: 169459
Number of successful extensions: 498
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 126
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)