Query 033369
Match_columns 121
No_of_seqs 143 out of 1081
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 6.1E-47 1.3E-51 257.1 12.0 109 11-119 6-115 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 9.4E-47 2E-51 251.7 9.8 108 12-119 3-110 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 2E-44 4.4E-49 235.2 9.8 112 8-119 2-113 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 6.6E-43 1.4E-47 238.9 13.1 109 11-119 3-111 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.9E-42 4.1E-47 235.6 13.1 108 12-119 3-110 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 7.9E-40 1.7E-44 225.0 9.6 109 11-119 4-116 (200)
7 KOG0421 Ubiquitin-protein liga 100.0 5.1E-40 1.1E-44 217.5 7.6 112 8-119 27-138 (175)
8 KOG0425 Ubiquitin-protein liga 100.0 6.6E-39 1.4E-43 214.8 10.6 109 11-119 6-128 (171)
9 KOG0424 Ubiquitin-protein liga 100.0 1.3E-38 2.9E-43 210.6 10.3 112 8-119 2-120 (158)
10 KOG0426 Ubiquitin-protein liga 100.0 1.2E-38 2.6E-43 208.5 9.6 112 8-119 2-127 (165)
11 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-38 2.6E-43 215.1 9.9 106 14-119 1-108 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 9.5E-38 2.1E-42 211.0 12.1 107 13-119 2-109 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 4.2E-36 9.2E-41 203.8 11.7 107 13-119 1-109 (145)
14 KOG0427 Ubiquitin conjugating 100.0 2.4E-35 5.2E-40 192.7 9.8 114 5-119 10-124 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 8E-34 1.7E-38 187.0 8.6 108 11-119 3-112 (153)
16 KOG0423 Ubiquitin-protein liga 100.0 1.4E-32 3E-37 187.3 6.5 119 1-119 1-119 (223)
17 KOG0894 Ubiquitin-protein liga 100.0 2.7E-30 5.8E-35 181.3 11.3 109 8-118 3-114 (244)
18 KOG0420 Ubiquitin-protein liga 100.0 6.6E-31 1.4E-35 178.7 7.9 110 7-119 25-138 (184)
19 KOG0416 Ubiquitin-protein liga 100.0 1.3E-29 2.8E-34 172.2 7.1 100 12-114 5-105 (189)
20 KOG0428 Non-canonical ubiquiti 99.9 1.2E-24 2.6E-29 155.7 9.9 113 3-118 4-119 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 5.7E-20 1.2E-24 152.0 7.0 111 10-120 851-970 (1101)
22 KOG0895 Ubiquitin-conjugating 99.8 3E-18 6.4E-23 141.9 10.9 113 7-119 279-402 (1101)
23 KOG0429 Ubiquitin-conjugating 99.7 1.3E-17 2.9E-22 117.9 9.1 106 13-119 22-131 (258)
24 KOG0896 Ubiquitin-conjugating 99.6 2.2E-15 4.8E-20 99.2 8.1 106 12-117 7-119 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 8.9E-10 1.9E-14 70.9 2.3 62 59-120 13-76 (122)
26 PF08694 UFC1: Ubiquitin-fold 98.9 1.4E-09 3.1E-14 72.6 3.0 99 9-113 23-136 (161)
27 PF14461 Prok-E2_B: Prokaryoti 98.8 1.4E-08 3E-13 68.0 5.1 65 55-119 34-104 (133)
28 PF05743 UEV: UEV domain; Int 98.5 2.8E-07 6.1E-12 60.8 6.2 79 40-119 29-115 (121)
29 KOG3357 Uncharacterized conser 98.2 2.9E-06 6.3E-11 56.2 4.7 98 9-112 26-138 (167)
30 PF14462 Prok-E2_E: Prokaryoti 97.2 0.0077 1.7E-07 39.8 9.0 89 28-119 12-119 (122)
31 PF05773 RWD: RWD domain; Int 97.1 0.0018 3.8E-08 41.1 5.6 69 13-82 4-74 (113)
32 KOG2391 Vacuolar sorting prote 97.0 0.0058 1.2E-07 46.7 8.5 71 46-117 55-133 (365)
33 smart00591 RWD domain in RING 96.7 0.016 3.4E-07 36.4 7.3 27 55-81 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.6 0.017 3.7E-07 40.0 3.5 58 60-117 56-122 (162)
35 KOG0309 Conserved WD40 repeat- 93.1 0.77 1.7E-05 39.0 8.3 78 3-81 413-491 (1081)
36 PF09765 WD-3: WD-repeat regio 90.9 0.44 9.4E-06 36.0 4.3 86 10-118 99-185 (291)
37 KOG4018 Uncharacterized conser 85.4 3.7 8.1E-05 29.7 5.9 22 58-79 50-71 (215)
38 PF06113 BRE: Brain and reprod 78.5 6.5 0.00014 30.3 5.3 58 53-116 61-121 (333)
39 TIGR03737 PRTRC_B PRTRC system 77.8 2.3 5E-05 31.1 2.6 36 81-120 132-171 (228)
40 PF14460 Prok-E2_D: Prokaryoti 76.3 2.1 4.6E-05 29.8 2.0 14 85-98 98-111 (175)
41 cd00421 intradiol_dioxygenase 63.3 14 0.0003 24.9 3.7 25 56-80 65-90 (146)
42 smart00340 HALZ homeobox assoc 62.8 6.4 0.00014 21.1 1.6 14 12-25 21-34 (44)
43 KOG4445 Uncharacterized conser 62.3 11 0.00024 28.8 3.4 25 57-81 45-69 (368)
44 cd03457 intradiol_dioxygenase_ 57.6 19 0.00041 25.5 3.8 25 56-80 86-110 (188)
45 PF08203 RNA_polI_A14: Yeast R 54.9 12 0.00025 22.7 2.0 13 10-22 59-71 (76)
46 PF03366 YEATS: YEATS family; 54.8 47 0.001 20.3 5.0 42 40-83 2-43 (84)
47 PF06113 BRE: Brain and reprod 51.1 26 0.00057 27.1 3.9 28 56-84 305-332 (333)
48 cd03459 3,4-PCD Protocatechuat 51.1 29 0.00062 23.8 3.7 25 56-80 72-101 (158)
49 PF00845 Gemini_BL1: Geminivir 50.4 45 0.00097 24.9 4.8 47 38-84 101-155 (276)
50 PF09606 Med15: ARC105 or Med1 47.1 6.4 0.00014 33.9 0.0 25 57-81 714-738 (799)
51 cd05845 Ig2_L1-CAM_like Second 44.0 68 0.0015 20.0 4.4 26 54-81 16-41 (95)
52 COG0544 Tig FKBP-type peptidyl 41.2 73 0.0016 25.6 5.1 15 57-71 209-223 (441)
53 TIGR02423 protocat_alph protoc 40.8 47 0.001 23.6 3.6 24 56-79 96-124 (193)
54 PF14135 DUF4302: Domain of un 39.3 95 0.0021 22.5 5.1 72 10-92 9-104 (235)
55 KOG0177 20S proteasome, regula 37.4 15 0.00032 26.2 0.6 27 90-116 135-161 (200)
56 cd03463 3,4-PCD_alpha Protocat 35.9 64 0.0014 22.8 3.7 23 57-79 93-120 (185)
57 KOG1814 Predicted E3 ubiquitin 35.6 38 0.00083 27.1 2.7 22 59-80 76-98 (445)
58 PF13950 Epimerase_Csub: UDP-g 35.2 29 0.00063 19.8 1.6 16 100-115 36-51 (62)
59 PF09943 DUF2175: Uncharacteri 34.7 43 0.00092 21.4 2.3 20 40-61 1-20 (101)
60 KOG3285 Spindle assembly check 34.7 75 0.0016 22.6 3.7 58 8-76 117-174 (203)
61 KOG1047 Bifunctional leukotrie 34.3 44 0.00095 27.9 2.9 29 52-81 248-279 (613)
62 PF14455 Metal_CEHH: Predicted 33.1 1.2E+02 0.0026 21.0 4.4 63 15-81 10-76 (177)
63 PF12065 DUF3545: Protein of u 32.8 33 0.00072 19.7 1.5 13 12-24 36-48 (59)
64 PF00779 BTK: BTK motif; Inte 31.0 17 0.00038 18.2 0.1 14 82-95 2-16 (32)
65 COG3866 PelB Pectate lyase [Ca 30.7 1E+02 0.0022 23.9 4.1 41 40-80 197-240 (345)
66 PF05751 FixH: FixH; InterPro 30.5 1.6E+02 0.0034 19.2 5.4 54 13-67 43-96 (146)
67 PF09967 DUF2201: VWA-like dom 29.8 1.6E+02 0.0034 19.1 4.6 33 3-35 7-39 (126)
68 KOG0700 Protein phosphatase 2C 29.6 95 0.0021 24.7 4.0 77 9-92 244-331 (390)
69 PF05709 Sipho_tail: Phage tai 29.4 2E+02 0.0044 20.1 6.1 63 8-72 50-115 (249)
70 PF15572 Imm26: Immunity prote 26.8 74 0.0016 20.1 2.4 26 49-79 7-32 (96)
71 PF09458 H_lectin: H-type lect 26.5 1E+02 0.0023 17.5 3.0 23 58-81 2-24 (72)
72 TIGR01633 phi3626_gp14_N putat 26.3 1.7E+02 0.0037 18.3 6.6 60 9-69 61-122 (124)
73 TIGR02439 catechol_proteo cate 24.8 1.2E+02 0.0026 23.0 3.6 25 56-80 180-222 (285)
74 KOG3696 Aspartyl beta-hydroxyl 24.7 1.5E+02 0.0034 22.9 4.2 38 53-90 283-326 (334)
75 COG2819 Predicted hydrolase of 24.6 1.3E+02 0.0029 22.5 3.8 30 51-80 15-46 (264)
76 PRK15486 hpaC 4-hydroxyphenyla 24.2 45 0.00098 23.1 1.3 68 15-99 6-76 (170)
77 PRK11700 hypothetical protein; 24.0 2.7E+02 0.0059 19.8 6.2 99 10-114 51-184 (187)
78 cd03461 1,2-HQD Hydroxyquinol 23.4 1.3E+02 0.0029 22.7 3.7 25 56-80 172-214 (277)
79 PRK00907 hypothetical protein; 23.3 32 0.0007 21.5 0.3 11 62-72 11-21 (92)
80 PF04881 Adeno_GP19K: Adenovir 23.1 98 0.0021 20.7 2.6 20 36-55 44-63 (139)
81 cd03464 3,4-PCD_beta Protocate 22.7 1.4E+02 0.0031 21.7 3.6 24 56-79 122-152 (220)
82 TIGR02438 catachol_actin catec 22.6 1.4E+02 0.0031 22.6 3.7 25 56-80 184-226 (281)
83 COG1853 Conserved protein/doma 22.4 58 0.0013 22.3 1.5 30 71-100 44-76 (176)
84 PF06305 DUF1049: Protein of u 22.3 82 0.0018 17.7 2.0 16 10-25 48-63 (68)
85 PF03487 IL13: Interleukin-13; 22.2 86 0.0019 16.6 1.8 18 8-25 25-42 (43)
86 PF14824 Sirohm_synth_M: Siroh 22.2 60 0.0013 16.0 1.1 18 5-22 12-29 (30)
87 PF10654 DUF2481: Protein of u 22.0 1.2E+02 0.0025 20.0 2.7 21 5-25 22-42 (126)
88 PRK04184 DNA topoisomerase VI 22.0 4.6E+02 0.01 21.8 6.8 85 5-92 290-388 (535)
89 KOG4274 Positive cofactor 2 (P 21.7 1.7E+02 0.0038 24.7 4.2 50 13-73 622-675 (742)
90 cd03460 1,2-CTD Catechol 1,2 d 21.5 1.5E+02 0.0033 22.4 3.7 25 56-80 176-218 (282)
91 KOG3203 Mitochondrial/chloropl 21.3 55 0.0012 22.6 1.2 13 81-94 50-62 (165)
92 TIGR02422 protocat_beta protoc 21.2 1.6E+02 0.0034 21.4 3.6 24 56-79 117-147 (220)
93 PF12259 DUF3609: Protein of u 21.1 59 0.0013 25.5 1.4 25 11-35 33-57 (361)
94 TIGR01239 galT_2 galactose-1-p 21.1 94 0.002 25.4 2.6 26 54-88 356-386 (489)
95 TIGR02296 HpaC 4-hydroxyphenyl 21.1 45 0.00097 22.5 0.7 29 71-99 36-67 (154)
96 PRK01271 4-oxalocrotonate taut 20.9 1E+02 0.0022 18.5 2.1 44 7-50 13-60 (76)
97 PF08872 KGK: KGK domain; Int 20.6 2.2E+02 0.0048 18.5 3.9 24 42-65 67-92 (114)
98 PRK05892 nucleoside diphosphat 20.0 1.4E+02 0.003 20.4 3.0 20 5-24 6-25 (158)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-47 Score=257.14 Aligned_cols=109 Identities=42% Similarity=0.810 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||++|+++|++++++++++.+.++ |+++|++.|.||++||||||.|++.|.||++||++||+|+|.++|||||||.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 889999999999999999999998887 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|+||+|+|+++|+|++++++||++|++++
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL 115 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLL 115 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-47 Score=251.74 Aligned_cols=108 Identities=43% Similarity=0.796 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCC
Q 033369 12 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNG 91 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 91 (121)
.+||.+|+++|++.+++||++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.+|
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G 82 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG 82 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 92 EICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 92 ~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.||+|+|+++|+|+++|.+||++|++++
T Consensus 83 ~IclDILk~~WsPAl~i~~VllsI~sLL 110 (148)
T KOG0417|consen 83 RICLDILKDQWSPALTISKVLLSICSLL 110 (148)
T ss_pred cchHHhhhccCChhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999865
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=235.24 Aligned_cols=112 Identities=30% Similarity=0.686 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
+..|.+||.+|+++|+++++.|++..|.++|+..|.+.|+||++|||+||.|++.|+|+++||.+||.|+|.+.+|||||
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv 81 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV 81 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|.+|.+|+|+|+..|+|+|++..||.+||+|+
T Consensus 82 ya~G~iClDiLqNrWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 82 YADGSICLDILQNRWSPTYDVASILTSIQSLL 113 (152)
T ss_pred CCCCcchHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999986
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=6.6e-43 Score=238.93 Aligned_cols=109 Identities=40% Similarity=0.806 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATN 90 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 90 (121)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 91 GEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 91 G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|.||+++|+++|+|++||.+||++|++++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll 111 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALL 111 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-42 Score=235.61 Aligned_cols=108 Identities=40% Similarity=0.762 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCC
Q 033369 12 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNG 91 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 91 (121)
.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 92 EICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 92 ~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.||+++|.++|+|++||++||.+|++++
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll 110 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLL 110 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-40 Score=225.00 Aligned_cols=109 Identities=39% Similarity=0.760 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhcCC---CCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 11 VIKQLAKELKSLDESP---PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~---~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
+.+||++|.+++.+++ ..|+.++..++|+.+..+.|.||+|||||||.|.++|++|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 7899999999999987 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 AT-NGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~-~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
++ +|.||+|+|+++|.+++|++++|++||+++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL 116 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALL 116 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHH
Confidence 96 999999999999999999999999999875
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-40 Score=217.55 Aligned_cols=112 Identities=31% Similarity=0.547 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
..++.|||++||..|+....+||++.|+++|++.|..+|.||.+|+|+|..|++.+.||.+||++||+|+|.|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|..|.||+|||++.|+..|++++||++||+++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLL 138 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLL 138 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-39 Score=214.77 Aligned_cols=109 Identities=34% Similarity=0.649 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEee-cCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+..-|+++|++|++++.+|+++.. ++.|+++|.+.|.||++|+|+||.|+..+.||.+||.+||+++|.+++||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 567889999999999999999965 5569999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCC-------------CCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTLK-------------KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|.+|++||. +.|.|.+|+++||++|.+|+
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL 128 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISML 128 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHH
Confidence 9999999984 56999999999999999886
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=210.60 Aligned_cols=112 Identities=28% Similarity=0.595 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecC-----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVND-----DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
|..++.||++|-+.+.++.+.|+++.|.. .|+..|+|.|.|+++|+||||.|++++.||++||.+||+++|.++.
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 45678999999999999999999998753 3799999999999999999999999999999999999999999999
Q ss_pred cccCccCCCceeccCCCCC--CCCcCCHHHHHHHHhccc
Q 033369 83 FHPNIATNGEICVNTLKKD--WNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~--W~p~~~i~~vl~~i~~~~ 119 (121)
||||||++|.|||++|.+. |+|+.||.+||++||+++
T Consensus 82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL 120 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLL 120 (158)
T ss_pred cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999754 999999999999999875
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=208.46 Aligned_cols=112 Identities=37% Similarity=0.689 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEee-cCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
+..++|||.+||++|..++|+||.+.+ +++|+++|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+||||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 467999999999999999999999876 5789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCC-------------CCCCCcCCHHHHHHHHhccc
Q 033369 87 IATNGEICVNTLK-------------KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+.+|++|+++|. +.|+|.++++.||+++-+|+
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML 127 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML 127 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH
Confidence 9999999999984 57999999999999999986
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.2e-38 Score=215.10 Aligned_cols=106 Identities=43% Similarity=0.844 Sum_probs=97.2
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCc
Q 033369 14 QLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGE 92 (121)
Q Consensus 14 Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 92 (121)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CCCCcCCHHHHHHHHhccc
Q 033369 93 ICVNTLKK-DWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 93 icl~~l~~-~W~p~~~i~~vl~~i~~~~ 119 (121)
||+++|.. .|+|+++|.+||.+|++++
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLL 108 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHHHHHHHH
Confidence 99999985 5999999999999999875
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=9.5e-38 Score=211.01 Aligned_cols=107 Identities=41% Similarity=0.828 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCc
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGE 92 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 92 (121)
|||++|+++++++++.|+++.+.++|+++|+++|.|+++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCC-CCCcCCHHHHHHHHhccc
Q 033369 93 ICVNTLKKD-WNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 93 icl~~l~~~-W~p~~~i~~vl~~i~~~~ 119 (121)
||+++|... |+|++++.+||.+|++++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLL 109 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence 999999876 999999999999999886
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=4.2e-36 Score=203.79 Aligned_cols=107 Identities=42% Similarity=0.801 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCC
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNG 91 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 91 (121)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988765 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCC-CCCCCcCCHHHHHHHHhccc
Q 033369 92 EICVNTLK-KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 92 ~icl~~l~-~~W~p~~~i~~vl~~i~~~~ 119 (121)
.||+++|. ++|+|++++.++|.+|++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l 109 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLL 109 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999998 89999999999999999876
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=192.70 Aligned_cols=114 Identities=25% Similarity=0.565 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC-c
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI-F 83 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~ 83 (121)
+.++..+.+||+|||.+||.++|.|+... ..+|+.+|.+.+.|.+||.|+|..|++.++||+.||++.|.|.|..++ .
T Consensus 10 k~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 10 KALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 34566889999999999999999999987 667999999999999999999999999999999999999999999885 6
Q ss_pred ccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 84 HPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 84 Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
||+||.||.||+|+|.+.|+|++++.+|.++|-+|+
T Consensus 89 HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSML 124 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSML 124 (161)
T ss_pred CCceecCCeEEEEeecccCCcchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-34 Score=187.04 Aligned_cols=108 Identities=27% Similarity=0.564 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeE-EeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIK-VGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~-v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||.+|+++|+++....+. ++.+++|++.|.+.|. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 569999999999998765443 4567889999999999 89999999999999999999999999999999999999999
Q ss_pred CCceeccCC-CCCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTL-KKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l-~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.|.+|+.++ .++|+|++++.+||++|.++|
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~li 112 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALI 112 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHh
Confidence 999999998 489999999999999987654
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-32 Score=187.31 Aligned_cols=119 Identities=81% Similarity=1.292 Sum_probs=116.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
|+++.++....+|.+.+|++.|...+|+||.|.++++|+....+.|.||.+|||++|.|++.+.+..|||.+||+-.|.|
T Consensus 1 m~snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT 80 (223)
T KOG0423|consen 1 MASNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT 80 (223)
T ss_pred CCcccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 81 KIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+||||||..+|.||.+.|+.+|+|+.+|..||+.|+-++
T Consensus 81 KIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLL 119 (223)
T KOG0423|consen 81 KIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLL 119 (223)
T ss_pred eeccCCcccCceehhhhhhcccCcccchhhHhhhhheee
Confidence 999999999999999999999999999999999987654
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-30 Score=181.31 Aligned_cols=109 Identities=25% Similarity=0.444 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
+.++.|||+|||+.|++++.++|.+++.++|+.+|+.++.||++|||+||.|+.+|.||++||++||.|+..||- ..+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--GRF 80 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--GRF 80 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--Cce
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999972 333
Q ss_pred cCCCceeccCC---CCCCCCcCCHHHHHHHHhcc
Q 033369 88 ATNGEICVNTL---KKDWNPSLGLRHVLIVSSDG 118 (121)
Q Consensus 88 ~~~G~icl~~l---~~~W~p~~~i~~vl~~i~~~ 118 (121)
-.+-++||++- .+.|+|.+++.+||.+|-++
T Consensus 81 ktntRLCLSiSDfHPdsWNP~WsVStILtGLlSF 114 (244)
T KOG0894|consen 81 KTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSF 114 (244)
T ss_pred ecCceEEEeccccCcCcCCCcccHHHHHHHHHHH
Confidence 34568999886 48899999999999998764
No 18
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=178.67 Aligned_cols=110 Identities=30% Similarity=0.553 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEe----ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 7 LPPNVIKQLAKELKSLDESPPEGIKVG----VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~~~~~~~~v~----~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
..+.++-||++|..++.- |++++.. +++.+..+.+.+|. |+++.|+||.|.|++.+|+.||++||+|+|.|++
T Consensus 25 ~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 25 KVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 344566688888777654 6666642 23333335888888 9999999999999999999999999999999999
Q ss_pred cccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 83 FHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
||||||.+|.|||+||+++|+|+.+|.+|+-+++.++
T Consensus 102 ~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF 138 (184)
T KOG0420|consen 102 YHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLF 138 (184)
T ss_pred ccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999998765
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=172.17 Aligned_cols=100 Identities=26% Similarity=0.674 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC-C
Q 033369 12 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT-N 90 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~-~ 90 (121)
-||+..|...|.. .+..|...++++.++++.+.||.+|||+||++++++.+|++||++.|.|.|.++||||||++ +
T Consensus 5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~S 81 (189)
T KOG0416|consen 5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEAS 81 (189)
T ss_pred ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhcc
Confidence 3799999998886 56678889999999999999999999999999999999999999999999999999999996 9
Q ss_pred CceeccCCCCCCCCcCCHHHHHHH
Q 033369 91 GEICVNTLKKDWNPSLGLRHVLIV 114 (121)
Q Consensus 91 G~icl~~l~~~W~p~~~i~~vl~~ 114 (121)
|.||||.+...|+|.+.+..|+..
T Consensus 82 GsVCLDViNQtWSp~yDL~NIfet 105 (189)
T KOG0416|consen 82 GSVCLDVINQTWSPLYDLVNIFET 105 (189)
T ss_pred CccHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999998887654
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=155.66 Aligned_cols=113 Identities=27% Similarity=0.488 Sum_probs=98.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 3 TNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 3 ~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
..-|....+.|||++|.++|+ ++-+.+-+.+-++|+++|+++|.||.+|-||||+|+.+|.||.+||++||.+..+|+-
T Consensus 4 erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN 82 (314)
T KOG0428|consen 4 ERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN 82 (314)
T ss_pred hhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC
Confidence 334666788999999999999 5556666788999999999999999999999999999999999999999999999963
Q ss_pred cccCccCCCceeccCCC---CCCCCcCCHHHHHHHHhcc
Q 033369 83 FHPNIATNGEICVNTLK---KDWNPSLGLRHVLIVSSDG 118 (121)
Q Consensus 83 ~Hpnv~~~G~icl~~l~---~~W~p~~~i~~vl~~i~~~ 118 (121)
..+.-+-+|||++-. +.|.|+|+|.+.|++|..+
T Consensus 83 --GRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgF 119 (314)
T KOG0428|consen 83 --GRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGF 119 (314)
T ss_pred --CceeeCceEEEEecCCCccccCcchhHHHHHHHHHcc
Confidence 334446789999974 8899999999999998754
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.7e-20 Score=151.98 Aligned_cols=111 Identities=32% Similarity=0.581 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc--CcccCc
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK--IFHPNI 87 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv 87 (121)
...+..+.|++-|..+.|.|+.|+..++.+.-..+.|.|+.+|||.+|.|.|.+.||.+||..||.|...+. .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 456667778888888999999999999999999999999999999999999999999999999999999985 689999
Q ss_pred cCCCceeccCCC-------CCCCCcCCHHHHHHHHhcccC
Q 033369 88 ATNGEICVNTLK-------KDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 88 ~~~G~icl~~l~-------~~W~p~~~i~~vl~~i~~~~~ 120 (121)
|++|++|+++|. +-|+|+-+|.+||.+||.+|.
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVL 970 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhc
Confidence 999999999995 569999999999999999873
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-18 Score=141.94 Aligned_cols=113 Identities=35% Similarity=0.597 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc---Cc
Q 033369 7 LPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK---IF 83 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~ 83 (121)
-+....+|+++|++-+.++.++|+.+.+.+.++...++.|.|+.+|||++|.|.|+|.||..||..||.|.+.+. .+
T Consensus 279 hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 279 HSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred cchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 355778999999999999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred ccCccCCCceeccCCC-------CCCCCc-CCHHHHHHHHhccc
Q 033369 84 HPNIATNGEICVNTLK-------KDWNPS-LGLRHVLIVSSDGN 119 (121)
Q Consensus 84 Hpnv~~~G~icl~~l~-------~~W~p~-~~i~~vl~~i~~~~ 119 (121)
.||.|.+|+||+++|. +.|+|. .+|.++|.+||.++
T Consensus 359 nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li 402 (1101)
T KOG0895|consen 359 NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLI 402 (1101)
T ss_pred cCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhh
Confidence 9999999999999984 679999 78999999999875
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-17 Score=117.89 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeEEEeccCcccCccC-
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH--SPPKGYFLTKIFHPNIAT- 89 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~- 89 (121)
-.|..|+..+.+.+.+||+|.|+-.|-+.|+++|++.. +.|.||+|+|+|.+|++||. .-|+|.|.+.++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35788888888889999999999999999999999655 58999999999999999996 579999999999999996
Q ss_pred CCceeccCCCCCCCCcC-CHHHHHHHHhccc
Q 033369 90 NGEICVNTLKKDWNPSL-GLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~~~W~p~~-~i~~vl~~i~~~~ 119 (121)
++.+|++.....|+-.. .|.+||..+|..+
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF 131 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIF 131 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHh
Confidence 99999998877797774 7999999998654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.2e-15 Score=99.21 Aligned_cols=106 Identities=27% Similarity=0.438 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCCCC-eEEeecC-CC--CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 12 IKQLAKELKSLDESPPEG-IKVGVND-DD--FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~-~~v~~~~-~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
--||.+|+.+=++...+| ++...++ +| +..|...|.||+.|+||+.+|.++|.+.++||..||.|+|.+++--.-|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 357888888887754333 4433333 33 6789999999999999999999999999999999999999999988888
Q ss_pred cC-CCceeccCC--CCCCCCcCCHHHHHHHHhc
Q 033369 88 AT-NGEICVNTL--KKDWNPSLGLRHVLIVSSD 117 (121)
Q Consensus 88 ~~-~G~icl~~l--~~~W~p~~~i~~vl~~i~~ 117 (121)
+. +|.+.-..+ -++|+-.|+++.+|..++.
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRK 119 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhH
Confidence 84 778776443 3799999999999999874
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.9e-10 Score=70.93 Aligned_cols=62 Identities=16% Similarity=0.403 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCCCCCCeEEEeccCc-ccCccCCCceeccCCC-CCCCCcCCHHHHHHHHhcccC
Q 033369 59 FRMKLLLSHDFPHSPPKGYFLTKIF-HPNIATNGEICVNTLK-KDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 59 f~~~i~fp~~YP~~pP~v~f~t~i~-Hpnv~~~G~icl~~l~-~~W~p~~~i~~vl~~i~~~~~ 120 (121)
..+.+.|+++||+.||.++...|+- -.-|-.+|.||+.+|. ++|+.+++++.++++|.+|+.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhh
Confidence 4567889999999999999887642 2334478999999995 789999999999999988763
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.88 E-value=1.4e-09 Score=72.62 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEE
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGV----------FRMKLLLSHDFPHSPPKGYF 78 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~v~f 78 (121)
.....||.+||..|-+ +|+.++++-..|+-.=.-++||-|.|.+ |.+++.+|..||..||.+..
T Consensus 23 ~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 6789999999999876 4444544555666555667777777744 66677779999999999987
Q ss_pred ecc-CcccCccCCCceeccCCC----CCCCCcCCHHHHHH
Q 033369 79 LTK-IFHPNIATNGEICVNTLK----KDWNPSLGLRHVLI 113 (121)
Q Consensus 79 ~t~-i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~vl~ 113 (121)
..= ---.-.|..|+||++... ..-.|.++|.+.|.
T Consensus 97 PeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHala 136 (161)
T PF08694_consen 97 PELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHALA 136 (161)
T ss_dssp GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHHH
T ss_pred cccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHHH
Confidence 640 011223448999999864 45688899888763
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.77 E-value=1.4e-08 Score=68.04 Aligned_cols=65 Identities=23% Similarity=0.544 Sum_probs=57.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEeccC---cccCccCCCceec---cCCCCCCCCcCCHHHHHHHHhccc
Q 033369 55 ENGVFRMKLLLSHDFPHSPPKGYFLTKI---FHPNIATNGEICV---NTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ ....+.|.|.-.+.++|.+.+.++
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL 104 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLL 104 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 777789999999999988877653
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.54 E-value=2.8e-07 Score=60.83 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=51.3
Q ss_pred ceEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEeccCc-----ccCccCCCceeccCCCCCCCC-cCCHHHH
Q 033369 40 STIFADIEGPAGTPYENGVFR--MKLLLSHDFPHSPPKGYFLTKIF-----HPNIATNGEICVNTLKKDWNP-SLGLRHV 111 (121)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i~-----Hpnv~~~G~icl~~l~~~W~p-~~~i~~v 111 (121)
.+--..+.|--.-.|+|..|. +.|-+|.+||.+||.+....... +.+||.+|+|.+..| ++|++ ..++.++
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~l 107 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDL 107 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHH
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHH
Confidence 333344444333468888875 56668999999999998775322 449999999998877 47877 6789999
Q ss_pred HHHHhccc
Q 033369 112 LIVSSDGN 119 (121)
Q Consensus 112 l~~i~~~~ 119 (121)
+..+++.+
T Consensus 108 v~~l~~~F 115 (121)
T PF05743_consen 108 VQELQAVF 115 (121)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 88887654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.9e-06 Score=56.16 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEE
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGV----------FRMKLLLSHDFPHSPPKGYF 78 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~v~f 78 (121)
....+||.+||+.|.. +++.++++-..|+-.-..+++|-|-|.+ |.+++.+|-.||..+|.+..
T Consensus 26 ~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 26 DLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred hHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 3568999999999875 4455555666777666778999998855 55666679999999999876
Q ss_pred eccC-cccCccCCCceeccCCC----CCCCCcCCHHHHH
Q 033369 79 LTKI-FHPNIATNGEICVNTLK----KDWNPSLGLRHVL 112 (121)
Q Consensus 79 ~t~i-~Hpnv~~~G~icl~~l~----~~W~p~~~i~~vl 112 (121)
..-- -.-..|..|+||+.-.. ..-.|.++|.+.+
T Consensus 100 peldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 5300 01123357999996542 2336667776654
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=97.16 E-value=0.0077 Score=39.79 Aligned_cols=89 Identities=15% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCeEEeecCCCCceEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCce--ecc-------
Q 033369 28 EGIKVGVNDDDFSTIFADIEG--PAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEI--CVN------- 96 (121)
Q Consensus 28 ~~~~v~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~i--cl~------- 96 (121)
.|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|.+.+..|-.... ..|.+ |-+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 56777765555566765 544 57778999999999999999999999887776532111 11222 222
Q ss_pred -------CCCCCCCCcC-CHHHHHHHHhccc
Q 033369 97 -------TLKKDWNPSL-GLRHVLIVSSDGN 119 (121)
Q Consensus 97 -------~l~~~W~p~~-~i~~vl~~i~~~~ 119 (121)
.....|+|.. +|.+.|..|...+
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 1225699987 6888888887653
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.11 E-value=0.0018 Score=41.14 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEG--PAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
.+...|+..|+.--+... ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.++.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876433322 22233445556666632 2334445568999999999999999999988754
No 32
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0058 Score=46.67 Aligned_cols=71 Identities=21% Similarity=0.499 Sum_probs=51.8
Q ss_pred EeCCCCCCCCCcEEEE--EEEcCCCCCCCCCeEEEecc-----CcccCccCCCceeccCCCCCCCCc-CCHHHHHHHHhc
Q 033369 46 IEGPAGTPYENGVFRM--KLLLSHDFPHSPPKGYFLTK-----IFHPNIATNGEICVNTLKKDWNPS-LGLRHVLIVSSD 117 (121)
Q Consensus 46 i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p~-~~i~~vl~~i~~ 117 (121)
+.|---.+|.|..|.+ .|-+.+.||+.||.+..... -.|-+|+.+|.|.|..|. .|.|. .++..++..+-+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHH
Confidence 3444445788888765 45579999999999866642 138999999999999986 78665 567777655543
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.67 E-value=0.016 Score=36.42 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 55 ENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988764
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.59 E-value=0.017 Score=39.98 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=45.0
Q ss_pred EEEEEcCCCCCCCCCeEEEeccCc---ccCccCC-----CceeccCCC-CCCCCcCCHHHHHHHHhc
Q 033369 60 RMKLLLSHDFPHSPPKGYFLTKIF---HPNIATN-----GEICVNTLK-KDWNPSLGLRHVLIVSSD 117 (121)
Q Consensus 60 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~vl~~i~~ 117 (121)
.+.|.|+.+||..+|.|.+..+.| +|+++.. ..+|+..-. ..|.+..++..+|..|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~ 122 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFD 122 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHH
Confidence 356889999999999887776543 5777744 679986543 579999999999988864
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.07 E-value=0.77 Score=39.05 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC-CCCeEEEecc
Q 033369 3 TNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPH-SPPKGYFLTK 81 (121)
Q Consensus 3 ~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 81 (121)
+.........+-|.+|+.-|-.. -..+.++-.+---..-.+.+.+|---.-..-..++.|.||.+||. .+|++.|..+
T Consensus 413 q~~~~n~~~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 413 QEDLFNETLPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred cccccchhhhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 33444455566777888777543 234444423323345556666653222112335889999999999 4799999864
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=90.85 E-value=0.44 Score=36.02 Aligned_cols=86 Identities=23% Similarity=0.389 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
...++|.+|+.++..+.. +.+. .++++....+.+... +....++|.++.+||.++|.+...-++
T Consensus 99 ~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~------- 162 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI------- 162 (291)
T ss_dssp GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred HHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-------
Confidence 356788888888876433 2322 355777777777621 256889999999999999975433322
Q ss_pred CCceeccCCCCCCCC-cCCHHHHHHHHhcc
Q 033369 90 NGEICVNTLKKDWNP-SLGLRHVLIVSSDG 118 (121)
Q Consensus 90 ~G~icl~~l~~~W~p-~~~i~~vl~~i~~~ 118 (121)
.+...|.+ ..++.+++...+..
T Consensus 163 -------~~~~~w~~~~ssL~~v~~qF~~~ 185 (291)
T PF09765_consen 163 -------PFSLSWSPSQSSLKDVVQQFQEA 185 (291)
T ss_dssp --------HHHHHHCHT-SHHHHHHHHHHH
T ss_pred -------chhhhhcccccCHHHHHHHHHHH
Confidence 11236777 56788887776654
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=85.43 E-value=3.7 Score=29.66 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe
Q 033369 58 VFRMKLLLSHDFPHSPPKGYFL 79 (121)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~ 79 (121)
.+.+.+.++++||..+|.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999433
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=78.53 E-value=6.5 Score=30.34 Aligned_cols=58 Identities=22% Similarity=0.500 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeEEEec-cCcccCccCCCceeccCCCCCCCCcC--CHHHHHHHHh
Q 033369 53 PYENGVFRMKLLLSHDFPHSPPKGYFLT-KIFHPNIATNGEICVNTLKKDWNPSL--GLRHVLIVSS 116 (121)
Q Consensus 53 ~y~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~vl~~i~ 116 (121)
||.|...+-+|.|...||..||.+.|.. .-|+|... .+ ..| .+|++.- .+..++..++
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~l--~~L-~~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---KL--PSL-VNWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---hc--chh-hcCCCCCchHHHHHHHHHH
Confidence 6889999999999999999999999963 34777431 11 111 5787774 4666666554
No 39
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=77.77 E-value=2.3 Score=31.09 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=22.4
Q ss_pred cCccc---CccCCCceeccCCCCCCCCcC-CHHHHHHHHhcccC
Q 033369 81 KIFHP---NIATNGEICVNTLKKDWNPSL-GLRHVLIVSSDGNF 120 (121)
Q Consensus 81 ~i~Hp---nv~~~G~icl~~l~~~W~p~~-~i~~vl~~i~~~~~ 120 (121)
+.||. ||+++|+||+.-.. .|.. ++.+ +.+..+.+|
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHh
Confidence 45554 89999999996543 4443 3444 555555554
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=76.32 E-value=2.1 Score=29.78 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.7
Q ss_pred cCccCCCceeccCC
Q 033369 85 PNIATNGEICVNTL 98 (121)
Q Consensus 85 pnv~~~G~icl~~l 98 (121)
+||+.+|+||+...
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 48999999999663
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=63.27 E-value=14 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=22.5
Q ss_pred CcEEEEEEEcCCCCC-CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP-HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP-~~pP~v~f~t 80 (121)
.|.|.|.-.+|-.|| .+||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999998874
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.79 E-value=6.4 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcC
Q 033369 12 IKQLAKELKSLDES 25 (121)
Q Consensus 12 ~~Rl~~El~~l~~~ 25 (121)
-+||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999998763
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=62.33 E-value=11 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=22.4
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 57 GVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
-++.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5688999999999999999999875
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=57.59 E-value=19 Score=25.47 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.6
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
.|.|.|+=.+|--||.++|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999998874
No 45
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=54.94 E-value=12 Score=22.73 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHh
Q 033369 10 NVIKQLAKELKSL 22 (121)
Q Consensus 10 ~~~~Rl~~El~~l 22 (121)
+.+|||++||+-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 6699999999877
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=54.83 E-value=47 Score=20.26 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=28.3
Q ss_pred ceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCc
Q 033369 40 STIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF 83 (121)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (121)
.+|.+.+.|+.+.--..-+=++...+.++|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999887765555667788888998887 6665665543
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=51.15 E-value=26 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=23.0
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 033369 56 NGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (121)
+-.|-+.|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3458888899999999999999985 344
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.13 E-value=29 Score=23.82 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=22.2
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP-----HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP-----~~pP~v~f~t 80 (121)
.|.|.|+=.+|--|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 8999998874
No 49
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=50.41 E-value=45 Score=24.86 Aligned_cols=47 Identities=26% Similarity=0.189 Sum_probs=30.6
Q ss_pred CCceEEEEEeCCCCCCCCC---cEEEEEEEcC-----CCCCCCCCeEEEeccCcc
Q 033369 38 DFSTIFADIEGPAGTPYEN---GVFRMKLLLS-----HDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 38 ~~~~w~~~i~gp~~t~y~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 84 (121)
|..-|.+.....+.-..+| ..|+.++.+. .|-||+||+|+.+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4555776665333333333 3366666664 789999999999998653
No 50
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=47.06 E-value=6.4 Score=33.90 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=0.0
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 57 GVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+=-++|.+|.|||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3445789999999999999887654
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.98 E-value=68 Score=19.95 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=19.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 54 YENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 54 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
-||..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45666777777788899 588988864
No 52
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=73 Score=25.61 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.7
Q ss_pred cEEEEEEEcCCCCCC
Q 033369 57 GVFRMKLLLSHDFPH 71 (121)
Q Consensus 57 g~f~~~i~fp~~YP~ 71 (121)
-...+.++||.+|+.
T Consensus 209 e~k~i~vtFP~dy~a 223 (441)
T COG0544 209 EEKDIKVTFPEDYHA 223 (441)
T ss_pred CeeEEEEEcccccch
Confidence 337789999999998
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=40.85 E-value=47 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeEEEe
Q 033369 56 NGVFRMKLLLSHDFPH-----SPPKGYFL 79 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~-----~pP~v~f~ 79 (121)
.|.|.|+=..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 88888776
No 54
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=39.29 E-value=95 Score=22.46 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCC-------------------C
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDF-------------------P 70 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y-------------------P 70 (121)
++..|+.+.++++++.. .+...-|.+.+....+..| || |.+-+.|.++= -
T Consensus 9 s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 45578888777777521 1122347777773333334 33 77766665433 3
Q ss_pred C---CCCeEEEec--cCcccCccCCCc
Q 033369 71 H---SPPKGYFLT--KIFHPNIATNGE 92 (121)
Q Consensus 71 ~---~pP~v~f~t--~i~Hpnv~~~G~ 92 (121)
. .-|.+.|.| ++.|-..++++.
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCCcc
Confidence 3 348888887 367776665433
No 55
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=15 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHh
Q 033369 90 NGEICVNTLKKDWNPSLGLRHVLIVSS 116 (121)
Q Consensus 90 ~G~icl~~l~~~W~p~~~i~~vl~~i~ 116 (121)
.+..|++++...|+|..|++..+.-++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmk 161 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMK 161 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHH
Confidence 457999999999999999988776554
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.91 E-value=64 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.8
Q ss_pred cEEEEEEEcCCCCCC-----CCCeEEEe
Q 033369 57 GVFRMKLLLSHDFPH-----SPPKGYFL 79 (121)
Q Consensus 57 g~f~~~i~fp~~YP~-----~pP~v~f~ 79 (121)
|.|.|+=.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 78877776
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.61 E-value=38 Score=27.08 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCC-CCCeEEEec
Q 033369 59 FRMKLLLSHDFPH-SPPKGYFLT 80 (121)
Q Consensus 59 f~~~i~fp~~YP~-~pP~v~f~t 80 (121)
..++..+|++||. +||++...+
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeeecCCccccCCCCceeeeh
Confidence 3467788999998 567665443
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.18 E-value=29 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=9.7
Q ss_pred CCCCCcCCHHHHHHHH
Q 033369 100 KDWNPSLGLRHVLIVS 115 (121)
Q Consensus 100 ~~W~p~~~i~~vl~~i 115 (121)
-+|.|.++|.++|...
T Consensus 36 LgW~p~~~L~~~i~~~ 51 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDA 51 (62)
T ss_dssp C----SSSHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHH
Confidence 3899999999998753
No 59
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=34.73 E-value=43 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.2
Q ss_pred ceEEEEEeCCCCCCCCCcEEEE
Q 033369 40 STIFADIEGPAGTPYENGVFRM 61 (121)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~~ 61 (121)
.+|.|.+.|-+ .|+|-.|.|
T Consensus 1 ~kWkC~iCg~~--I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICGKP--IYEGQLFTF 20 (101)
T ss_pred CceEEEecCCe--eeecceEEE
Confidence 37999999754 899999886
No 60
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.67 E-value=75 Score=22.58 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeE
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKG 76 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v 76 (121)
.....+|+++|++.+.++--..++..|.-+....+.+.+.--+++ ..|.++-.+-|++
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 345689999999999987777777766655566777777655544 3455555555543
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=34.34 E-value=44 Score=27.86 Aligned_cols=29 Identities=34% Similarity=0.616 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeEEEecc
Q 033369 52 TPYENGVFRMKLLLSHDFPH---SPPKGYFLTK 81 (121)
Q Consensus 52 t~y~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 81 (121)
+||.=|.|-+ +.+|++||+ +-|.++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4777788875 567999999 6799999997
No 62
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=33.09 E-value=1.2e+02 Score=21.04 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCC----CCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 15 LAKELKSLDESP----PEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 15 l~~El~~l~~~~----~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
..+|.+.+.... -.|+.+ .+.++=...+.+..|+-.|- --...+++.| .||-..||.|.|+.+
T Consensus 10 FdR~V~~~~~~~~a~r~rgwfL--iqa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 10 FDRQVGRFRPRADAYRMRGWFL--IQASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHhhhhhhhhHhhhcCeEE--EEccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 455566555432 145554 33344444555554555553 2224566666 579999999999976
No 63
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=32.78 E-value=33 Score=19.71 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhc
Q 033369 12 IKQLAKELKSLDE 24 (121)
Q Consensus 12 ~~Rl~~El~~l~~ 24 (121)
.+||++||+++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4689999988864
No 64
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=31.03 E-value=17 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=8.4
Q ss_pred CcccCccCCCc-eec
Q 033369 82 IFHPNIATNGE-ICV 95 (121)
Q Consensus 82 i~Hpnv~~~G~-icl 95 (121)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999998776 344
No 65
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=30.70 E-value=1e+02 Score=23.89 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCCC-CCCCcEEEEEEEcC--CCCCCCCCeEEEec
Q 033369 40 STIFADIEGPAGT-PYENGVFRMKLLLS--HDFPHSPPKGYFLT 80 (121)
Q Consensus 40 ~~w~~~i~gp~~t-~y~gg~f~~~i~fp--~~YP~~pP~v~f~t 80 (121)
.+|...+.|-.|+ -|++|.+++++.-- ++-=.+.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 4688889996665 78899998877621 33344677999874
No 66
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=30.51 E-value=1.6e+02 Score=19.18 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSH 67 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~ 67 (121)
+..++++++.++....|..+...-++ ....+.+.-+.+.|-.+...++.+.-|.
T Consensus 43 ~~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~ 96 (146)
T PF05751_consen 43 LAYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPT 96 (146)
T ss_pred hhhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCC
Confidence 34555555555544455555433322 3444455446777777777777777764
No 67
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=29.83 E-value=1.6e+02 Score=19.10 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeec
Q 033369 3 TNENLPPNVIKQLAKELKSLDESPPEGIKVGVN 35 (121)
Q Consensus 3 ~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~ 35 (121)
++.+++...+++...|+..+.+.....+.+...
T Consensus 7 tSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~ 39 (126)
T PF09967_consen 7 TSGSISDEELRRFLSEVAGILRRFPAEVHVIQF 39 (126)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 467888899999999999999876555655433
No 68
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=29.61 E-value=95 Score=24.66 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEE--EEeCCCCCCCCCcEEE---------EEEEcCCCCCCCCCeEE
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFA--DIEGPAGTPYENGVFR---------MKLLLSHDFPHSPPKGY 77 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~--~i~gp~~t~y~gg~f~---------~~i~fp~~YP~~pP~v~ 77 (121)
....-.+..|.++|....|..-.+...+. |++ .|. |.. -+-.+.|+ +. .|...|++.||-++
T Consensus 244 ~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~----~RvkG~L~-vsR-AfGd~~lK~~~~n~e~l~~-~fr~~~~~t~Pylt 316 (390)
T KOG0700|consen 244 TDHNASNEDEVRRIRSEHPDDPHIVVNKH----WRVKGILQ-VSR-AFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLT 316 (390)
T ss_pred hhhccccHHHHHHHHHhCCCCcceEeecc----ceeeEEEE-eee-eccceeecchhhccchhHh-hcCCCCCCCCCcee
Confidence 33444577888888877664443333332 443 222 111 12222222 12 67889999999999
Q ss_pred EeccCcccCccCCCc
Q 033369 78 FLTKIFHPNIATNGE 92 (121)
Q Consensus 78 f~t~i~Hpnv~~~G~ 92 (121)
..+.++|--+.++-+
T Consensus 317 aeP~i~~HrL~p~Dk 331 (390)
T KOG0700|consen 317 AEPSITHHKLTPNDK 331 (390)
T ss_pred ccceEEEEEcCCCCe
Confidence 999888777766444
No 69
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=29.38 E-value=2e+02 Score=20.11 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCC---CCCCCCCcEEEEEEEcCCCCCCC
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGP---AGTPYENGVFRMKLLLSHDFPHS 72 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp---~~t~y~gg~f~~~i~fp~~YP~~ 72 (121)
+.....++.+++.++.... .+..+..+++.-..|.+.+.+. +.. ...+.+.+.+.+|+-|-..
T Consensus 50 ~~~~~~~~~~~l~~~l~~~-~~~~l~f~d~p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 50 DREDFEQKRRELASWLNPK-EPVKLIFDDDPDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp SHHHHHHHHHHHHHHH--S-S-EEEEETTSTT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhhCcC-CCEEEEEECCCCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 3455667788888877533 3377777777677888887664 332 3345777777776555555
No 70
>PF15572 Imm26: Immunity protein 26
Probab=26.83 E-value=74 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe
Q 033369 49 PAGTPYENGVFRMKLLLSHDFPHSPPKGYFL 79 (121)
Q Consensus 49 p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (121)
+++..+.|.+|++ |..||++ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 4556777877765 6669998 666665
No 71
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=26.53 E-value=1e+02 Score=17.46 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=13.0
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 033369 58 VFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+...|.|+..|.. ||+|.+.-.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i~ 24 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSIN 24 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEEE
Confidence 35678999988887 888876643
No 72
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=26.31 E-value=1.7e+02 Score=18.27 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCC--CCCCcEEEEEEEcCCCC
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGT--PYENGVFRMKLLLSHDF 69 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t--~y~gg~f~~~i~fp~~Y 69 (121)
....++..++++.+.... ....+..+++.-.-|.+.+.|..+- ...-|.+++++.+|+-|
T Consensus 61 ~~~~~~~~~~l~~~L~~~-~~~~L~f~dePd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP~ 122 (124)
T TIGR01633 61 PRDLRELFRELAGWLNSQ-EPVPLIFSDEPDKTYYARVDEEIDLDEDTTFGKGTLNFICPDPY 122 (124)
T ss_pred HHHHHHHHHHHHHHhCCC-CCcceEeccCCCcEEEEEEcCccCHHHhhcccEEEEEEEecCCc
Confidence 345677788888876543 2234444554445777877763221 12347888888887643
No 73
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=24.80 E-value=1.2e+02 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=21.0
Q ss_pred CcEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP------------------HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (121)
.|.|.|+=..|.-|| .+||.|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 388999999999997 5788888873
No 74
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=1.5e+02 Score=22.87 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCCC-cEEEEEEEcC-----CCCCCCCCeEEEeccCcccCccCC
Q 033369 53 PYEN-GVFRMKLLLS-----HDFPHSPPKGYFLTKIFHPNIATN 90 (121)
Q Consensus 53 ~y~g-g~f~~~i~fp-----~~YP~~pP~v~f~t~i~Hpnv~~~ 90 (121)
-|+- ...-++..|= +.=+...|+|.|.-.+|||||-.-
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 3543 3444555543 444456899999999999999753
No 75
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.63 E-value=1.3e+02 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeEEEec
Q 033369 51 GTPYENGVFRMKLLLSHDFPHSP--PKGYFLT 80 (121)
Q Consensus 51 ~t~y~gg~f~~~i~fp~~YP~~p--P~v~f~t 80 (121)
.+.+.|..|++-+..|.+||-.- |.|.|..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 35788999999999999999988 9999885
No 76
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=24.19 E-value=45 Score=23.08 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc---CcccCccCCC
Q 033369 15 LAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK---IFHPNIATNG 91 (121)
Q Consensus 15 l~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpnv~~~G 91 (121)
+..++++....-+.|++|-...++ +.+ .|-+-.--..+ -.+||.|-+.-. --|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~Sv----SldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSV----TDTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEe----EcCCCEEEEEECCCCchhHHHHhCC
Confidence 455788888888889987533211 111 12111111111 146999888743 4577788899
Q ss_pred ceeccCCC
Q 033369 92 EICVNTLK 99 (121)
Q Consensus 92 ~icl~~l~ 99 (121)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999986
No 77
>PRK11700 hypothetical protein; Provisional
Probab=23.97 E-value=2.7e+02 Score=19.80 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHh----hcCCCCC---eEEeecCC-CCceEEEE---EeCCCCCCC-CCcEEEEEEEcCC----------
Q 033369 10 NVIKQLAKELKSL----DESPPEG---IKVGVNDD-DFSTIFAD---IEGPAGTPY-ENGVFRMKLLLSH---------- 67 (121)
Q Consensus 10 ~~~~Rl~~El~~l----~~~~~~~---~~v~~~~~-~~~~w~~~---i~gp~~t~y-~gg~f~~~i~fp~---------- 67 (121)
...+|+...+.+. .++...| +.++.+.. ....|.+. +.-|.+.-| .-|.=++++.+|.
T Consensus 51 ~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~ 130 (187)
T PRK11700 51 ETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARAL 130 (187)
T ss_pred HHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHH
Confidence 3445666665553 2232333 22232221 34556553 344545545 4467788888873
Q ss_pred ----CCCCCCCeEEEe--c------cCcccCcc-CCCceeccCCCCCCCCcCCHHHHHHH
Q 033369 68 ----DFPHSPPKGYFL--T------KIFHPNIA-TNGEICVNTLKKDWNPSLGLRHVLIV 114 (121)
Q Consensus 68 ----~YP~~pP~v~f~--t------~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~ 114 (121)
+.|..++-|++. + +.-+|-|- .+|.+|+.+. -++|++|+.+
T Consensus 131 all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 131 ALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred HhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc------CccHHHHHHh
Confidence 234444544444 3 35667666 6899999764 2577777654
No 78
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=23.42 E-value=1.3e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=21.1
Q ss_pred CcEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP------------------HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (121)
.|.|.|+=..|.-|| .+||.|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 488999999999999 4788888873
No 79
>PRK00907 hypothetical protein; Provisional
Probab=23.33 E-value=32 Score=21.47 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=9.0
Q ss_pred EEEcCCCCCCC
Q 033369 62 KLLLSHDFPHS 72 (121)
Q Consensus 62 ~i~fp~~YP~~ 72 (121)
.|+||-+||++
T Consensus 11 liEFPc~fpiK 21 (92)
T PRK00907 11 GFQFPGTFELS 21 (92)
T ss_pred cEecCCCCeEE
Confidence 47899999984
No 80
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.15 E-value=98 Score=20.75 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCCCceEEEEEeCCCCCCCC
Q 033369 36 DDDFSTIFADIEGPAGTPYE 55 (121)
Q Consensus 36 ~~~~~~w~~~i~gp~~t~y~ 55 (121)
..|...|.+++.|++|++..
T Consensus 44 PGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred CCCCcceEEEEECCCCccee
Confidence 45677888888988887764
No 81
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.72 E-value=1.4e+02 Score=21.66 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=20.6
Q ss_pred CcEEEEEEEcCCCCCC-------CCCeEEEe
Q 033369 56 NGVFRMKLLLSHDFPH-------SPPKGYFL 79 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~ 79 (121)
.|.|.|+=..|--||. .||-|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89998885
No 82
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=22.60 E-value=1.4e+02 Score=22.55 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=20.6
Q ss_pred CcEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP------------------HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (121)
.|.|.|+=..|..|| .+||.|.|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 488999999998887 5788888773
No 83
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=22.41 E-value=58 Score=22.31 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCCCeEEEec---cCcccCccCCCceeccCCCC
Q 033369 71 HSPPKGYFLT---KIFHPNIATNGEICVNTLKK 100 (121)
Q Consensus 71 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~~ 100 (121)
+.||.|.+.- +--++|+.++|+++++++.+
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~ 76 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSE 76 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCCH
Confidence 3588887774 34588888999999999863
No 84
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.28 E-value=82 Score=17.72 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhcC
Q 033369 10 NVIKQLAKELKSLDES 25 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~ 25 (121)
...+|+++|+++++++
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567788888887763
No 85
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.20 E-value=86 Score=16.56 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHhhcC
Q 033369 8 PPNVIKQLAKELKSLDES 25 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~ 25 (121)
+..++|-|.+|+..+.++
T Consensus 25 ~~~alkELIeELvNITqn 42 (43)
T PF03487_consen 25 SSTALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhhccC
Confidence 456889999999888764
No 86
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=22.16 E-value=60 Score=16.00 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 033369 5 ENLPPNVIKQLAKELKSL 22 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l 22 (121)
+..+....++|.+|+++.
T Consensus 12 nG~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 12 NGKSPRLARLIRKEIERL 29 (30)
T ss_dssp SSS-HHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 344566678888888764
No 87
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.02 E-value=1.2e+02 Score=20.00 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcC
Q 033369 5 ENLPPNVIKQLAKELKSLDES 25 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~ 25 (121)
.+++-+-.+-|++||.+|++.
T Consensus 22 ~dl~~~~~k~LqkeLn~Lm~~ 42 (126)
T PF10654_consen 22 NDLSFSKRKELQKELNQLMNE 42 (126)
T ss_pred CCCChHHHHHHHHHHHHHHhc
Confidence 466777788899999999874
No 88
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=21.97 E-value=4.6e+02 Score=21.79 Aligned_cols=85 Identities=14% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCC----------CceEEEEEeCCCCCCCCCcEEEEEEEc--CCCC-CC
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDD----------FSTIFADIEGPAGTPYENGVFRMKLLL--SHDF-PH 71 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~----------~~~w~~~i~gp~~t~y~gg~f~~~i~f--p~~Y-P~ 71 (121)
.+++...+.||.+=+++..-..|++-.+.|..++ --+|...+..++. .|.|+-|-+++-+ .-+- |.
T Consensus 290 ~~l~~~~~~~l~~~~~~~~~~~pp~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~-~y~g~pfiVE~~iayGg~~~~~ 368 (535)
T PRK04184 290 KELTREELERLVEAFKKYKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPK-VYSGHPFIVEVGIAYGGEIPPD 368 (535)
T ss_pred hhCCHHHHHHHHHHHHhccCcCCCCccCCCCCHHHHHHHHHHhcCccEEEEeccCCc-ccCCCCeEEEEEeeecCCCCCC
Confidence 4566777888888888876654544455554432 1147788875554 6999988888765 3444 33
Q ss_pred C-CCeEEEeccCcccCccCCCc
Q 033369 72 S-PPKGYFLTKIFHPNIATNGE 92 (121)
Q Consensus 72 ~-pP~v~f~t~i~Hpnv~~~G~ 92 (121)
. +=.+||..++ |.+++.|.
T Consensus 369 ~~~~i~RfANrv--PLl~~~g~ 388 (535)
T PRK04184 369 DKPELLRFANRV--PLLYDEGS 388 (535)
T ss_pred CCceEEEEccCC--ceeecCCc
Confidence 3 3358999988 88886554
No 89
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=21.73 E-value=1.7e+02 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecC----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCC
Q 033369 13 KQLAKELKSLDESPPEGIKVGVND----DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~p 73 (121)
.-|++|++.|.. -+.|.++. +|--...|.| ++--+- -+++.+|.+||...
T Consensus 622 ~vlqgElarLD~----kF~v~ld~~~~~nN~I~liCkl---ddk~lP----Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 622 EVLQGELARLDA----KFEVDLDHQRHDNNHIILICKL---DDKQLP----PLRLSVPTTYPAQN 675 (742)
T ss_pred HHHHHHHHhhcc----ceeecCCcccccCCeeEEEEEe---cCCCCC----Ceeeeccccccccc
Confidence 347888888863 34454432 2322233333 333232 48999999999876
No 90
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.51 E-value=1.5e+02 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.534 Sum_probs=20.7
Q ss_pred CcEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033369 56 NGVFRMKLLLSHDFP------------------HSPPKGYFLT 80 (121)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (121)
.|.|.|+=..|.-|| .+||.|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 488999999999997 5788888773
No 91
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=55 Score=22.61 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=9.1
Q ss_pred cCcccCccCCCcee
Q 033369 81 KIFHPNIATNGEIC 94 (121)
Q Consensus 81 ~i~Hpnv~~~G~ic 94 (121)
|+|||+.| .|.+|
T Consensus 50 PiYhP~~D-cGD~V 62 (165)
T KOG3203|consen 50 PIYHPSTD-CGDHV 62 (165)
T ss_pred CccCCccC-CCCEE
Confidence 68999997 34433
No 92
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.23 E-value=1.6e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=20.8
Q ss_pred CcEEEEEEEcCCCCCC-------CCCeEEEe
Q 033369 56 NGVFRMKLLLSHDFPH-------SPPKGYFL 79 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~ 79 (121)
.|.|.|+=..|--||. .||-|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999986 89998885
No 93
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=21.14 E-value=59 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeec
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVN 35 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~ 35 (121)
.-++|++|++.++.+.+.+..+.++
T Consensus 33 sP~~L~~em~~V~~~L~~~~~lp~~ 57 (361)
T PF12259_consen 33 SPKQLLDEMKNVSSHLPRDWSLPLE 57 (361)
T ss_pred CHHHHHHHHHHHHhcCCcccccCcc
Confidence 3579999999998776655554433
No 94
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.12 E-value=94 Score=25.40 Aligned_cols=26 Identities=31% Similarity=0.805 Sum_probs=19.6
Q ss_pred CCCcEEEEEEEcC-----CCCCCCCCeEEEeccCcccCcc
Q 033369 54 YENGVFRMKLLLS-----HDFPHSPPKGYFLTKIFHPNIA 88 (121)
Q Consensus 54 y~gg~f~~~i~fp-----~~YP~~pP~v~f~t~i~Hpnv~ 88 (121)
..||.|++.+.+. ++||. .||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 5788899999985 45665 68888644
No 95
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=21.11 E-value=45 Score=22.52 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=23.0
Q ss_pred CCCCeEEEec---cCcccCccCCCceeccCCC
Q 033369 71 HSPPKGYFLT---KIFHPNIATNGEICVNTLK 99 (121)
Q Consensus 71 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~ 99 (121)
.+||.|.+.- .--|+.+.++|.+|+++|.
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~ 67 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLA 67 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECc
Confidence 5799988873 3457788889999999986
No 96
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=20.90 E-value=1e+02 Score=18.47 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhhc----CCCCCeEEeecCCCCceEEEEEeCCC
Q 033369 7 LPPNVIKQLAKELKSLDE----SPPEGIKVGVNDDDFSTIFADIEGPA 50 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~----~~~~~~~v~~~~~~~~~w~~~i~gp~ 50 (121)
.+....++|.+|+.++-. .++..++|...+-...+|.-.+..|+
T Consensus 13 ~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~ev~~~~W~~~vy~~e 60 (76)
T PRK01271 13 LDEEQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAEVWDAE 60 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEcCHHHhhHHhcCcc
Confidence 466667778888877644 36778888776666666755554443
No 97
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=20.55 E-value=2.2e+02 Score=18.46 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCCCCCcEEEE--EEEc
Q 033369 42 IFADIEGPAGTPYENGVFRM--KLLL 65 (121)
Q Consensus 42 w~~~i~gp~~t~y~gg~f~~--~i~f 65 (121)
..|-|..+...-|..|.+++ .++|
T Consensus 67 i~CeiL~~g~~~W~kGK~ri~~~leF 92 (114)
T PF08872_consen 67 IECEILRFGSKGWQKGKVRIKVSLEF 92 (114)
T ss_pred eeEEEeccCCCCCccceEEEEEEEEE
Confidence 35667777777899999999 7788
No 98
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.02 E-value=1.4e+02 Score=20.37 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 033369 5 ENLPPNVIKQLAKELKSLDE 24 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~ 24 (121)
.-++....++|++||..|..
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~ 25 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRA 25 (158)
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 45777888999999999875
Done!