Query 033369
Match_columns 121
No_of_seqs 143 out of 1081
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 21:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h2y_A Ubiquitin-conjugating e 100.0 6.3E-45 2.1E-49 244.1 14.4 119 1-120 12-131 (136)
2 1zdn_A Ubiquitin-conjugating e 100.0 4.5E-45 1.5E-49 250.2 13.4 119 1-119 3-122 (158)
3 2fo3_A Ubiquitin-conjugating e 100.0 7E-45 2.4E-49 240.7 12.9 110 10-119 6-116 (125)
4 2e2c_A Ubiquitin conjugating e 100.0 1.2E-44 4.1E-49 247.6 13.6 119 1-120 1-119 (156)
5 2c4o_A Ubiquitin-conjugating e 100.0 4.2E-44 1.4E-48 246.9 14.7 119 1-119 10-128 (165)
6 1ayz_A UBC2, ubiquitin-conjuga 100.0 2.9E-44 9.9E-49 248.5 12.9 111 9-119 3-113 (169)
7 2a7l_A Hypothetical ubiquitin- 100.0 1.6E-44 5.4E-49 242.0 10.6 108 12-119 24-135 (136)
8 4gpr_A Ubiquitin-conjugating e 100.0 8.4E-44 2.9E-48 242.3 14.3 112 8-119 2-113 (151)
9 2c2v_B Ubiquitin-conjugating e 100.0 2.3E-44 7.9E-49 245.8 10.8 113 8-120 3-115 (154)
10 2ayv_A Ubiquitin-conjugating e 100.0 8.5E-44 2.9E-48 245.6 13.6 113 7-119 18-130 (166)
11 2aak_A UBC1, ubiquitin conjuga 100.0 7.8E-44 2.7E-48 242.7 13.0 112 8-119 2-113 (152)
12 1z2u_A Ubiquitin-conjugating e 100.0 8.3E-44 2.8E-48 242.1 12.8 112 8-119 2-113 (150)
13 2ucz_A UBC7, ubiquitin conjuga 100.0 1.8E-43 6.1E-48 243.8 14.4 112 8-119 2-127 (165)
14 1yh2_A HSPC150 protein similar 100.0 2.3E-43 7.7E-48 244.1 14.5 112 8-119 2-117 (169)
15 1i7k_A Ubiquitin-conjugating e 100.0 9.1E-44 3.1E-48 247.9 11.5 113 7-119 27-139 (179)
16 3h8k_A Ubiquitin-conjugating e 100.0 3E-43 1E-47 242.4 13.9 111 9-119 2-126 (164)
17 2r0j_A Ubiquitin carrier prote 100.0 2.1E-43 7.3E-48 239.8 12.7 108 12-119 3-110 (149)
18 1jat_A Ubiquitin-conjugating e 100.0 1.5E-43 5.1E-48 242.0 10.4 110 10-119 5-114 (155)
19 3rcz_B SUMO-conjugating enzyme 100.0 3.7E-43 1.3E-47 241.8 12.1 116 4-119 4-126 (163)
20 3rz3_A Ubiquitin-conjugating e 100.0 8E-43 2.8E-47 244.0 13.8 111 9-119 6-130 (183)
21 1yrv_A Ubiquitin-conjugating l 100.0 1.9E-43 6.6E-48 244.4 10.4 115 5-119 18-135 (169)
22 1fxt_A Ubiquitin-conjugating e 100.0 2.9E-43 1E-47 239.1 10.6 109 11-119 2-112 (149)
23 3bzh_A Ubiquitin-conjugating e 100.0 5.7E-43 1.9E-47 246.6 12.2 111 9-119 47-157 (194)
24 2bep_A Ubiquitin-conjugating e 100.0 1.5E-42 5E-47 238.0 13.9 114 6-119 4-121 (159)
25 2awf_A Ubiquitin-conjugating e 100.0 1E-42 3.4E-47 241.4 13.2 115 6-120 13-141 (172)
26 2f4z_A Tgtwinscan_2721 - E2 do 100.0 6.9E-43 2.4E-47 245.9 12.1 119 1-119 22-155 (193)
27 2gjd_A Ubiquitin-conjugating e 100.0 1.3E-42 4.6E-47 237.7 11.6 111 9-119 3-120 (157)
28 2pwq_A Ubiquitin conjugating e 100.0 1.3E-42 4.5E-47 248.1 11.5 113 7-119 20-133 (216)
29 2grr_A Ubiquitin-conjugating e 100.0 3.3E-42 1.1E-46 236.6 12.4 114 6-119 3-123 (161)
30 2a4d_A Ubiquitin-conjugating e 100.0 1.4E-41 4.8E-46 233.0 13.9 115 6-120 21-142 (160)
31 3k9o_A Ubiquitin-conjugating e 100.0 5.1E-42 1.8E-46 243.0 12.1 112 8-119 3-118 (201)
32 3fn1_B NEDD8-conjugating enzym 100.0 1.7E-41 5.9E-46 234.2 13.6 116 4-120 8-130 (167)
33 1y8x_A Ubiquitin-conjugating e 100.0 2.5E-41 8.5E-46 232.0 13.1 109 8-119 4-113 (160)
34 3e46_A Ubiquitin-conjugating e 100.0 3.3E-41 1.1E-45 245.6 14.1 115 5-119 52-170 (253)
35 1wzv_A Ubiquitin-conjugating e 100.0 1.8E-41 6.3E-46 231.6 11.8 108 11-119 5-114 (155)
36 2nvu_C NEDD8-conjugating enzym 100.0 2.7E-41 9.4E-46 235.6 12.7 112 5-119 21-133 (180)
37 2q0v_A Ubiquitin-conjugating e 100.0 8.8E-41 3E-45 228.4 12.5 114 6-120 17-137 (156)
38 1tte_A Ubiquitin-conjugating e 100.0 6.3E-42 2.2E-46 244.4 6.9 110 11-120 3-114 (215)
39 2y9m_A Ubiquitin-conjugating e 100.0 1.3E-40 4.5E-45 230.8 13.2 113 7-119 3-130 (172)
40 2hlw_A Ubiquitin-conjugating e 100.0 7.8E-41 2.7E-45 231.4 10.6 111 9-119 34-151 (170)
41 1jat_B Ubiquitin-conjugating e 100.0 1.3E-40 4.3E-45 223.6 11.2 110 10-120 6-122 (138)
42 1c4z_D UBCH7, ubiquitin conjug 100.0 1.1E-40 3.8E-45 227.5 9.7 108 11-119 3-112 (154)
43 2f4w_A Ubiquitin-conjugating e 100.0 2.7E-40 9.3E-45 231.8 11.6 117 1-119 3-124 (187)
44 4ds2_A Ubiquitin-conjugating e 100.0 5.1E-41 1.7E-45 231.9 7.0 111 6-116 4-128 (167)
45 3o2u_A NEDD8-conjugating enzym 100.0 1.1E-39 3.6E-44 229.3 12.8 112 5-119 24-142 (190)
46 2onu_A Ubiquitin-conjugating e 100.0 6.5E-41 2.2E-45 228.3 5.0 106 11-119 3-110 (152)
47 1zuo_A Hypothetical protein LO 100.0 4.4E-40 1.5E-44 230.6 8.6 115 5-119 22-153 (186)
48 4ddg_A Ubiquitin-conjugating e 100.0 3.6E-39 1.2E-43 248.1 13.3 111 9-119 2-112 (399)
49 2z5d_A Ubiquitin-conjugating e 100.0 8.7E-40 3E-44 227.7 7.4 106 10-119 25-132 (179)
50 3ceg_A Baculoviral IAP repeat- 100.0 2.3E-38 7.8E-43 236.7 14.6 116 5-120 71-203 (323)
51 1yf9_A Ubiquitin carrier prote 100.0 1.7E-39 6E-44 224.9 7.4 106 10-119 12-119 (171)
52 2z6o_A UFM1-conjugating enzyme 100.0 3E-32 1E-36 185.5 3.1 100 8-113 30-144 (172)
53 3kpa_A Probable ubiquitin fold 99.9 8.6E-23 3E-27 136.4 2.7 98 9-112 33-145 (168)
54 3r3q_A Suppressor protein STP2 99.8 3.2E-20 1.1E-24 126.8 8.6 106 13-119 31-154 (162)
55 3obq_A Tumor susceptibility ge 99.6 7.8E-16 2.7E-20 103.5 6.4 76 37-118 51-135 (146)
56 2yz0_A Serine/threonine-protei 97.3 0.0034 1.2E-07 40.9 10.1 79 1-81 1-86 (138)
57 2ebm_A RWD domain-containing p 97.0 0.0045 1.5E-07 39.7 7.8 68 11-80 11-78 (128)
58 2day_A Ring finger protein 25; 96.7 0.018 6.1E-07 36.8 8.7 68 14-81 12-83 (128)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 95.8 0.066 2.3E-06 34.4 7.9 69 11-80 11-86 (137)
60 3zqs_A E3 ubiquitin-protein li 95.7 0.11 3.6E-06 35.8 9.1 82 13-118 4-85 (186)
61 2ebk_A RWD domain-containing p 95.2 0.022 7.6E-07 36.4 4.0 66 14-80 11-79 (128)
62 2daw_A RWD domain containing p 93.1 0.1 3.6E-06 34.5 3.9 24 58-81 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 93.0 0.064 2.2E-06 35.3 2.8 24 58-81 74-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 83.8 1.4 4.7E-05 19.8 2.7 22 9-30 4-25 (26)
65 2rf4_B DNA-directed RNA polyme 48.7 10 0.00036 22.6 2.0 14 9-22 61-74 (87)
66 3g9r_A Fusion complex of HIV-1 41.0 24 0.00082 17.8 2.3 16 9-24 27-42 (42)
67 3rls_A YAF9, protein AF-9 homo 41.0 80 0.0027 21.2 6.1 43 37-81 30-72 (175)
68 2bum_A Protocatechuate 3,4-dio 36.6 36 0.0012 23.5 3.5 26 55-80 109-139 (209)
69 3v5w_G G gamma-I, guanine nucl 35.8 25 0.00085 20.5 2.2 20 1-20 7-26 (77)
70 3kxt_A Chromatin protein CREN7 32.2 63 0.0022 17.4 3.5 11 61-71 46-56 (56)
71 3qrl_A Transcription initiatio 31.6 1.1E+02 0.0036 19.8 5.8 43 39-83 32-77 (140)
72 4div_S ORF46; distal tail prot 31.0 1.3E+02 0.0045 20.7 6.1 60 9-70 85-147 (253)
73 3pft_A Flavin reductase; desul 28.0 28 0.00097 22.4 1.8 30 71-100 42-74 (157)
74 2c5k_P Vacuolar protein sortin 27.8 33 0.0011 15.6 1.4 14 11-24 11-24 (26)
75 3s7v_A Major capsid protein VP 27.0 1.8E+02 0.006 20.9 5.8 44 49-95 194-239 (277)
76 3zs9_C Golgi to ER traffic pro 25.0 72 0.0025 15.9 2.5 19 5-23 2-20 (38)
77 2ccv_A Helix pomatia agglutini 25.0 94 0.0032 18.6 3.7 26 56-82 28-53 (101)
78 1m46_B IQ4, IQ4 motif from MYO 22.4 60 0.002 14.3 1.7 13 11-23 9-21 (26)
79 1sid_A Polyomavirus coat prote 22.2 2.2E+02 0.0075 21.4 5.7 24 72-95 249-274 (383)
80 4fmh_A VP1; viral capsid prote 20.9 2.4E+02 0.0081 20.4 5.5 60 28-95 183-247 (289)
81 2bum_B Protocatechuate 3,4-dio 20.8 60 0.002 22.9 2.4 26 55-80 134-166 (241)
82 2xsu_A Catechol 1,2 dioxygenas 20.7 58 0.002 23.9 2.4 26 55-80 187-230 (312)
83 3sjd_D Golgi to ER traffic pro 20.6 87 0.003 16.2 2.4 19 5-23 12-30 (46)
84 1f53_A Yeast killer toxin-like 20.4 23 0.00078 20.7 0.1 12 67-78 69-80 (84)
No 1
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.3e-45 Score=244.07 Aligned_cols=119 Identities=29% Similarity=0.533 Sum_probs=110.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
|++..+++ .+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 12 ~~~~~~~~-~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t 90 (136)
T 2h2y_A 12 IKTKYNLG-NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ 90 (136)
T ss_dssp SSSCCCTT-SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred hhhhccch-HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC
Confidence 44444443 57799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-cccCccCCCceeccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 81 KI-FHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 81 ~i-~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
++ |||||+.+|+||+++|.++|+|+++|.+||++|++++-
T Consensus 91 ~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~ 131 (136)
T 2h2y_A 91 KPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131 (136)
T ss_dssp SCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHh
Confidence 96 99999999999999999999999999999999999763
No 2
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-45 Score=250.23 Aligned_cols=119 Identities=59% Similarity=1.074 Sum_probs=112.2
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe
Q 033369 1 MATN-ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFL 79 (121)
Q Consensus 1 m~~~-~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (121)
|+++ .+++..+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 3 ~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 82 (158)
T 1zdn_A 3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL 82 (158)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred ccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec
Confidence 4544 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 80 TKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 80 t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|++|||||+.+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 83 t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 122 (158)
T 1zdn_A 83 TKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL 122 (158)
T ss_dssp SCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 3
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=7e-45 Score=240.73 Aligned_cols=110 Identities=29% Similarity=0.558 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC-cccCcc
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI-FHPNIA 88 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~ 88 (121)
++.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~ 85 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY 85 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 89 TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 89 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.+|+||+++|.++|+|+++|++||++|++++
T Consensus 86 ~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll 116 (125)
T 2fo3_A 86 SNGDICLSLLGDDYNPSLSISGLVLSIISML 116 (125)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEchhcCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 4
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-44 Score=247.64 Aligned_cols=119 Identities=31% Similarity=0.543 Sum_probs=112.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
||++.. +..+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 1 m~~~~~-~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (156)
T 2e2c_A 1 MTTSKE-RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT 79 (156)
T ss_dssp CCCCCS-CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred CCcccc-chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC
Confidence 777764 3457799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 81 KIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
++|||||+.+|+||+++|.++|+|+++|.+||.+|++++.
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~ 119 (156)
T 2e2c_A 80 PCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLG 119 (156)
T ss_dssp CCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTT
T ss_pred CcccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998863
No 5
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=4.2e-44 Score=246.91 Aligned_cols=119 Identities=35% Similarity=0.662 Sum_probs=109.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
|+--+.....+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 10 ~~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T 89 (165)
T 2c4o_A 10 MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89 (165)
T ss_dssp ------CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred ccccccCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec
Confidence 44445666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 81 KIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
++|||||+.+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 90 ~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll 128 (165)
T 2c4o_A 90 RIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 128 (165)
T ss_dssp CCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 6
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-44 Score=248.53 Aligned_cols=111 Identities=33% Similarity=0.688 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCcc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIA 88 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (121)
..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~ 82 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 89 TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 89 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.+|+||+++|.++|+|+++|.+||++|++++
T Consensus 83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll 113 (169)
T 1ayz_A 83 ANGEICLDILQNRWTPTYDVASILTSIQSLF 113 (169)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeehhhccCCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 7
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-44 Score=242.01 Aligned_cols=108 Identities=31% Similarity=0.624 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhcCCCCCeEEe--ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCc--ccCc
Q 033369 12 IKQLAKELKSLDESPPEGIKVG--VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF--HPNI 87 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~~~v~--~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpnv 87 (121)
.+||++|+++|++++++|+++. ++++|+++|+++|.||++||||||.|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 3999999999999999999965 78899999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|+||+++|+++|+|+++|++||++|++++
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL 135 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLSIISML 135 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 8
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=8.4e-44 Score=242.30 Aligned_cols=112 Identities=35% Similarity=0.708 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
+..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSISSLL 113 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-44 Score=245.79 Aligned_cols=113 Identities=33% Similarity=0.670 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
|.++.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (154)
T 2c2v_B 3 SAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82 (154)
T ss_dssp SCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
+.+|+||+++|.++|+|+++|.+||.+|++++.
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~ 115 (154)
T 2c2v_B 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLS 115 (154)
T ss_dssp CTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTT
T ss_pred ccCCeEEchhccCCCCCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999863
No 10
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=8.5e-44 Score=245.57 Aligned_cols=113 Identities=38% Similarity=0.720 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 7 LPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
....+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 97 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPN 97 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 87 IATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+.+|.||+++|.++|+|+++|.+||++|++++
T Consensus 98 I~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 130 (166)
T 2ayv_A 98 INSQGAICLDILKDQWSPALTISKVLLSISSLL 130 (166)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEcccccccCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=7.8e-44 Score=242.69 Aligned_cols=112 Identities=32% Similarity=0.682 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|.||+++|.++|+|+++|.+||.+|++++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (152)
T 2aak_A 82 YADGSICLDILQNQWSPIYDVAAILTSIQSLL 113 (152)
T ss_dssp CTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEechhhcCCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999876
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8.3e-44 Score=242.09 Aligned_cols=112 Identities=37% Similarity=0.722 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
|..+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 113 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLSICSLL 113 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 13
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-43 Score=243.75 Aligned_cols=112 Identities=37% Similarity=0.662 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecC-CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVND-DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
+..+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 81 (165)
T 2ucz_A 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN 81 (165)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence 45789999999999999999999998865 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCC-------------CCCCCCcCCHHHHHHHHhccc
Q 033369 87 IATNGEICVNTL-------------KKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~~~G~icl~~l-------------~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+.+|+||+++| .++|+|+++|.+||++|++++
T Consensus 82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 127 (165)
T 2ucz_A 82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML 127 (165)
T ss_dssp BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 999999999999 688999999999999999875
No 14
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-43 Score=244.11 Aligned_cols=112 Identities=38% Similarity=0.698 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
|.++.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC----CCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLK----KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~----~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|+||+++|. ++|+|+++|.+||++|++++
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll 117 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM 117 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHH
Confidence 999999999998 89999999999999999875
No 15
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.1e-44 Score=247.90 Aligned_cols=113 Identities=30% Similarity=0.481 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 7 LPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
++..+.+||++|+++|++++++||++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 87 IATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+.+|+||+++|.++|+|+++|.+||++|++++
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 139 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 16
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3e-43 Score=242.39 Aligned_cols=111 Identities=36% Similarity=0.639 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
..+++||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 46889999999999999999999988765 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC-------------CCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLK-------------KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~~~ 119 (121)
+.+|+||+++|. ++|+|++||++||++|++++
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll 126 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 126 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHH
Confidence 999999999997 78999999999999999875
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.1e-43 Score=239.84 Aligned_cols=108 Identities=39% Similarity=0.773 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCC
Q 033369 12 IKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNG 91 (121)
Q Consensus 12 ~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G 91 (121)
.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 92 EICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 92 ~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+||+++|.++|+|+++|.+||.+|++++
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll 110 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALL 110 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.5e-43 Score=242.00 Aligned_cols=110 Identities=40% Similarity=0.756 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
.+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALL 114 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 19
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-43 Score=241.75 Aligned_cols=116 Identities=23% Similarity=0.529 Sum_probs=106.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCC-----CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEE
Q 033369 4 NENLPPNVIKQLAKELKSLDESPPEGIKVGVNDD-----DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYF 78 (121)
Q Consensus 4 ~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f 78 (121)
.-.-|.++.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 4 ~~~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F 83 (163)
T 3rcz_B 4 HHHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRF 83 (163)
T ss_dssp -----CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred CcCCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEE
Confidence 3345678999999999999999999999988765 89999999999999999999999999999999999999999
Q ss_pred eccCcccCccCCCceeccCCCC--CCCCcCCHHHHHHHHhccc
Q 033369 79 LTKIFHPNIATNGEICVNTLKK--DWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 79 ~t~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~vl~~i~~~~ 119 (121)
.|++|||||+.+|+||+++|.+ +|+|+++|++||++|++++
T Consensus 84 ~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll 126 (163)
T 3rcz_B 84 TPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126 (163)
T ss_dssp SSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred eCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999975 4999999999999999886
No 20
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=8e-43 Score=244.02 Aligned_cols=111 Identities=40% Similarity=0.709 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNI 87 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (121)
..+.|||++|+++|++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 85 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85 (183)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCC
Confidence 4688999999999999999999998 678899999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC-------------CCCCCcCCHHHHHHHHhccc
Q 033369 88 ATNGEICVNTLK-------------KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 88 ~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~~~ 119 (121)
+++|+||+++|. ++|+|+++|++||++|++++
T Consensus 86 ~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll 130 (183)
T 3rz3_A 86 YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130 (183)
T ss_dssp CTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHH
Confidence 999999999996 78999999999999999875
No 21
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-43 Score=244.36 Aligned_cols=115 Identities=23% Similarity=0.437 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (121)
.+|+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 18 GSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred CccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc-cCCCceeccCCC--CCCCCcCCHHHHHHHHhccc
Q 033369 85 PNI-ATNGEICVNTLK--KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 85 pnv-~~~G~icl~~l~--~~W~p~~~i~~vl~~i~~~~ 119 (121)
||| +.+|+||+++|. ++|+|+++|.+||++|++++
T Consensus 98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll 135 (169)
T 1yrv_A 98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVML 135 (169)
T ss_dssp TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHH
Confidence 999 789999999998 89999999999999999876
No 22
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.9e-43 Score=239.15 Aligned_cols=109 Identities=33% Similarity=0.686 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 468999999999999999999999887 9999999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 90 -NGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 -~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|.||+++|.++|+|+++|.+||++|++++
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 112 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALL 112 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=5.7e-43 Score=246.57 Aligned_cols=111 Identities=33% Similarity=0.657 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCcc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIA 88 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (121)
..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 89 TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 89 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.+|.||+++|.++|+|+++|.+||++|++++
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 157 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLL 157 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 24
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.5e-42 Score=237.95 Aligned_cols=114 Identities=33% Similarity=0.712 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHhhcC---CCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 6 NLPPNVIKQLAKELKSLDES---PPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
.|+..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 83 (159)
T 2bep_A 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 83 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence 35677899999999999985 578999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcc-CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 83 FHPNIA-TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 83 ~Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|||||+ .+|+||+++|.++|+|+++|.+||.+|++++
T Consensus 84 ~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll 121 (159)
T 2bep_A 84 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 121 (159)
T ss_dssp CBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHH
Confidence 999999 4999999999999999999999999999876
No 25
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1e-42 Score=241.44 Aligned_cols=115 Identities=34% Similarity=0.636 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCeEEeecC-CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 033369 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVND-DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (121)
..+..+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H 92 (172)
T 2awf_A 13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH 92 (172)
T ss_dssp CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence 4466788999999999999999999998865 799999999999999999999999999999999999999999999999
Q ss_pred cCccCCCceeccCCC-------------CCCCCcCCHHHHHHHHhcccC
Q 033369 85 PNIATNGEICVNTLK-------------KDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 85 pnv~~~G~icl~~l~-------------~~W~p~~~i~~vl~~i~~~~~ 120 (121)
|||+.+|+||+++|. ++|+|+++|++||++|++++.
T Consensus 93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~ 141 (172)
T 2awf_A 93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141 (172)
T ss_dssp TTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHH
Confidence 999999999999996 689999999999999998763
No 26
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.9e-43 Score=245.91 Aligned_cols=119 Identities=36% Similarity=0.680 Sum_probs=103.6
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhhcCCC-------------CCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcC
Q 033369 1 MATNE-NLPPNVIKQLAKELKSLDESPP-------------EGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLS 66 (121)
Q Consensus 1 m~~~~-~~s~~~~~Rl~~El~~l~~~~~-------------~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp 66 (121)
||+.. ..+..+.+||++|+++|+++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||
T Consensus 22 m~~~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp 101 (193)
T 2f4z_A 22 MATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP 101 (193)
T ss_dssp ----------CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECC
Confidence 44443 2334578999999999999876 799999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEeccCcccCcc-CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 67 HDFPHSPPKGYFLTKIFHPNIA-TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 67 ~~YP~~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++|.+||++|++++
T Consensus 102 ~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll 155 (193)
T 2f4z_A 102 PDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155 (193)
T ss_dssp TTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred CcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999 5999999999999999999999999999876
No 27
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.3e-42 Score=237.71 Aligned_cols=111 Identities=27% Similarity=0.553 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecC-----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVND-----DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF 83 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (121)
..+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 4688999999999999999999998764 48999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCceeccCCCC--CCCCcCCHHHHHHHHhccc
Q 033369 84 HPNIATNGEICVNTLKK--DWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 84 Hpnv~~~G~icl~~l~~--~W~p~~~i~~vl~~i~~~~ 119 (121)
||||+.+|.||+++|.+ +|+|+++|.+||.+|++++
T Consensus 83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 120 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120 (157)
T ss_dssp CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999986 7999999999999999876
No 28
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.3e-42 Score=248.07 Aligned_cols=113 Identities=36% Similarity=0.715 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 7 LPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
.+..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 87 IA-TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+ .+|.||+++|.++|+|+++|.+||++|++++
T Consensus 100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL 133 (216)
T 2pwq_A 100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALL 133 (216)
T ss_dssp BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHH
Confidence 99 5999999999999999999999999999875
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.3e-42 Score=236.61 Aligned_cols=114 Identities=29% Similarity=0.637 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCeEEeecC-----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 6 NLPPNVIKQLAKELKSLDESPPEGIKVGVND-----DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
+|+..+.+||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 4677889999999999999999999997753 58999999999999999999999999999999999999999999
Q ss_pred cCcccCccCCCceeccCCCC--CCCCcCCHHHHHHHHhccc
Q 033369 81 KIFHPNIATNGEICVNTLKK--DWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~vl~~i~~~~ 119 (121)
++|||||+.+|.||+++|.+ +|+|+++|.+||.+|++++
T Consensus 83 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll 123 (161)
T 2grr_A 83 PLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123 (161)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred CcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHH
Confidence 99999999999999999975 8999999999999999875
No 30
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.4e-41 Score=233.00 Aligned_cols=115 Identities=24% Similarity=0.396 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCC-eEEee-cCCC--CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 6 NLPPNVIKQLAKELKSLDESPPEG-IKVGV-NDDD--FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~~~~~-~~v~~-~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+...+.+||++|+++|++++++| +++.+ +++| +++|+++|.||++||||||.|+++|.||++||++||+|+|.|+
T Consensus 21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 455778999999999999998888 77776 4554 8999999999999999999999999999999999999999999
Q ss_pred CcccCcc-CCCceeccCCC--CCCCCcCCHHHHHHHHhcccC
Q 033369 82 IFHPNIA-TNGEICVNTLK--KDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 82 i~Hpnv~-~~G~icl~~l~--~~W~p~~~i~~vl~~i~~~~~ 120 (121)
+|||||+ .+|+||+++|. ++|+|+++|++||++|++++.
T Consensus 101 i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~ 142 (160)
T 2a4d_A 101 INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMM 142 (160)
T ss_dssp CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHT
T ss_pred ceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHc
Confidence 9999999 69999999997 899999999999999999863
No 31
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=5.1e-42 Score=243.04 Aligned_cols=112 Identities=34% Similarity=0.721 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHhhcC---CCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 033369 8 PPNVIKQLAKELKSLDES---PPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (121)
+..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 82 (201)
T 3k9o_A 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 82 (201)
T ss_dssp -CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence 345789999999999987 36899999999999999999999999999999999999999999999999999999999
Q ss_pred cCccC-CCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 85 PNIAT-NGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 85 pnv~~-~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|||+. +|.||+++|.++|+|+++|.+||++|++++
T Consensus 83 Pnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 118 (201)
T 3k9o_A 83 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 118 (201)
T ss_dssp TTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHh
Confidence 99994 999999999999999999999999999876
No 32
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.7e-41 Score=234.25 Aligned_cols=116 Identities=28% Similarity=0.442 Sum_probs=108.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCeEEee-cCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 4 NENLPPNVIKQLAKELKSLDESPPEGIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 4 ~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
+.+....+.+||++|+++|++++++|+++.+ +++|+++|.++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (167)
T 3fn1_B 8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence 3566778899999999999999999999985 567899999998 89999999999999999999999999999999999
Q ss_pred cccCccCCCceeccCCCC------CCCCcCCHHHHHHHHhcccC
Q 033369 83 FHPNIATNGEICVNTLKK------DWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~------~W~p~~~i~~vl~~i~~~~~ 120 (121)
|||||+.+|+||+++|.. +|+|+++|.+||++|++++-
T Consensus 87 ~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~ 130 (167)
T 3fn1_B 87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 130 (167)
T ss_dssp CCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTT
T ss_pred ccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHc
Confidence 999999999999999975 79999999999999999863
No 33
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-41 Score=232.05 Aligned_cols=109 Identities=26% Similarity=0.525 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccC
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPN 86 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (121)
+..+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 456889999999999 467899998 7889999999988 999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 87 IATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 87 v~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|+.+|.||+++|.++|+|+++|.+||.+|++++
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 113 (160)
T 1y8x_A 81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 113 (160)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEcccchhhccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.3e-41 Score=245.55 Aligned_cols=115 Identities=33% Similarity=0.702 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcC---CCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 5 ENLPPNVIKQLAKELKSLDES---PPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+++..+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 456788999999999999987 46899999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcc-CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 82 IFHPNIA-TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 82 i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
||||||+ .+|.||+++|.++|+|+++|.+||++|++++
T Consensus 132 i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll 170 (253)
T 3e46_A 132 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL 170 (253)
T ss_dssp CCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHH
T ss_pred CccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHh
Confidence 9999999 4999999999999999999999999999876
No 35
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.8e-41 Score=231.61 Aligned_cols=108 Identities=28% Similarity=0.551 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEE-eecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKV-GVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||++|+++|++++++|+++ .++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 83 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC
Confidence 6799999999999999999999 788999999999999 99999999999999999999999999999999999999999
Q ss_pred CCceeccCC-CCCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTL-KKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l-~~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|.||+++| .++|+|+++|.+||.+|++++
T Consensus 84 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll 114 (155)
T 1wzv_A 84 NGQICLPIISSENWKPCTKTCQVLEALNVLV 114 (155)
T ss_dssp TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred CCeEeecCCCccCCCCCCcHHHHHHHHHHHH
Confidence 999999999 899999999999999999875
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-41 Score=235.65 Aligned_cols=112 Identities=24% Similarity=0.475 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCc
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIF 83 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (121)
.+.+..+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 21 ~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~ 97 (180)
T 2nvu_C 21 SKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 97 (180)
T ss_dssp CCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence 345667899999999999 467899998 7889999999988 999999999999999999999999999999999999
Q ss_pred ccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 84 HPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 84 Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
||||+.+|.||+++|.++|+|+++|.+||.+|++++
T Consensus 98 HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll 133 (180)
T 2nvu_C 98 HPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLF 133 (180)
T ss_dssp BTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 37
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=8.8e-41 Score=228.38 Aligned_cols=114 Identities=25% Similarity=0.428 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CCCCeEEeecC-C--CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 6 NLPPNVIKQLAKELKSLDES-PPEGIKVGVND-D--DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~-~~~~~~v~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.....+.+||++|+++|+++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 44556789999999999998 78899998743 3 59999999999999999999999999999999999999999999
Q ss_pred CcccCccCCCce---eccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 82 IFHPNIATNGEI---CVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 82 i~Hpnv~~~G~i---cl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
+|||||+.+|+| |+++|+ +|+|+++|++||++|++++.
T Consensus 97 i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~ 137 (156)
T 2q0v_A 97 IEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEML 137 (156)
T ss_dssp CCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTT
T ss_pred cccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHh
Confidence 999999999999 898887 59999999999999999863
No 38
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.3e-42 Score=244.41 Aligned_cols=110 Identities=32% Similarity=0.671 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDD-DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||++|+++|++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~ 82 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 82 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcC
Confidence 579999999999999999999998776 5679999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 90 -NGEICVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 90 -~G~icl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
+|.||+++|.++|+|++||.+||++|++++.
T Consensus 83 ~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~ 114 (215)
T 1tte_A 83 VTGAICLDILRNAWSPVITLKSALISLQALLQ 114 (215)
T ss_dssp SSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHT
T ss_pred CCCEEECccCCCCCCCcCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999998863
No 39
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.3e-40 Score=230.82 Aligned_cols=113 Identities=32% Similarity=0.556 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHhhc-C-C------CC---CeEEee-cCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q 033369 7 LPPNVIKQLAKELKSLDE-S-P------PE---GIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPP 74 (121)
Q Consensus 7 ~s~~~~~Rl~~El~~l~~-~-~------~~---~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP 74 (121)
|+..+.+||++|+++|++ . + +. ++.+.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 567899999999999998 4 3 33 466777 7889999999999999999999999999999999999999
Q ss_pred eEEEec-cCcccCcc-CCCceeccCCC-CCCCCcCCHHHHHHHHhccc
Q 033369 75 KGYFLT-KIFHPNIA-TNGEICVNTLK-KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 75 ~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|+|.| ++|||||+ .+|+||+++|. ++|+|+++|.+||++|++++
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll 130 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHH
Confidence 999999 99999996 79999999998 89999999999999999875
No 40
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=231.40 Aligned_cols=111 Identities=25% Similarity=0.400 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-eEEee-cCCC--CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcc
Q 033369 9 PNVIKQLAKELKSLDESPPEG-IKVGV-NDDD--FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFH 84 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~-~~v~~-~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (121)
..+.+||++|+++|++++++| +++.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 457899999999999998888 67776 5554 8999999999999999999999999999999999999999999999
Q ss_pred cCcc-CCCceeccCCC--CCCCCcCCHHHHHHHHhccc
Q 033369 85 PNIA-TNGEICVNTLK--KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 85 pnv~-~~G~icl~~l~--~~W~p~~~i~~vl~~i~~~~ 119 (121)
|||+ .+|+||+++|. ++|+|+++|++||++|++++
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll 151 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM 151 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHH
Confidence 9999 79999999997 89999999999999999876
No 41
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.3e-40 Score=223.63 Aligned_cols=110 Identities=26% Similarity=0.457 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhcC-CCCCeEEeecC-C--CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCccc
Q 033369 10 NVIKQLAKELKSLDES-PPEGIKVGVND-D--DFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHP 85 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~-~~~~~~v~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (121)
.+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 85 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP 85 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence 4669999999999998 78999998743 3 489999999999999999999999999999999999999999999999
Q ss_pred CccCC-Cce--eccCCCCCCCCcCCHHHHHHHHhcccC
Q 033369 86 NIATN-GEI--CVNTLKKDWNPSLGLRHVLIVSSDGNF 120 (121)
Q Consensus 86 nv~~~-G~i--cl~~l~~~W~p~~~i~~vl~~i~~~~~ 120 (121)
||+.+ |+| |+++|. +|+|+++|++||.+|++++.
T Consensus 86 nv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~ 122 (138)
T 1jat_B 86 CVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMA 122 (138)
T ss_dssp TBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHT
T ss_pred CEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHc
Confidence 99985 999 999886 89999999999999999863
No 42
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.1e-40 Score=227.51 Aligned_cols=108 Identities=28% Similarity=0.574 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEe-ecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 11 VIKQLAKELKSLDESPPEGIKVG-VNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
+.+||++|+++|++++++|+.+. ++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 45899999999999999999854 57789999999998 99999999999999999999999999999999999999999
Q ss_pred CCceeccCCC-CCCCCcCCHHHHHHHHhccc
Q 033369 90 NGEICVNTLK-KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~-~~W~p~~~i~~vl~~i~~~~ 119 (121)
+|+||+++|. ++|+|+++|.+||.+|++++
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll 112 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALV 112 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999996 89999999999999999875
No 43
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-40 Score=231.82 Aligned_cols=117 Identities=22% Similarity=0.447 Sum_probs=98.3
Q ss_pred CCCC--CCCCHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEE
Q 033369 1 MATN--ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYF 78 (121)
Q Consensus 1 m~~~--~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f 78 (121)
|+++ ++.+..+.+||++|+++|++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 3 mss~~~~~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f 82 (187)
T 2f4w_A 3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM 82 (187)
T ss_dssp -----------CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred CCccCCCCCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccc
Confidence 5444 45556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccCccCCCceeccCC---CCCCCCcCCHHHHHHHHhccc
Q 033369 79 LTKIFHPNIATNGEICVNTL---KKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 79 ~t~i~Hpnv~~~G~icl~~l---~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.|+ ||||+.+|+||+++| .++|+|+++|.+||.+|++++
T Consensus 83 ~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll 124 (187)
T 2f4w_A 83 ITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM 124 (187)
T ss_dssp CSC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHH
T ss_pred cCC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHh
Confidence 999 999999999999999 689999999999999999875
No 44
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=5.1e-41 Score=231.90 Aligned_cols=111 Identities=24% Similarity=0.483 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCC------------CCCeEEeecCCCCceEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCC
Q 033369 6 NLPPNVIKQLAKELKSLDESP------------PEGIKVGVNDDDFSTIFADIEGPAGTPYE--NGVFRMKLLLSHDFPH 71 (121)
Q Consensus 6 ~~s~~~~~Rl~~El~~l~~~~------------~~~~~v~~~~~~~~~w~~~i~gp~~t~y~--gg~f~~~i~fp~~YP~ 71 (121)
+|+..+.|||++|+++|++++ +.|+.+.++++|+++|+++|.||++|||+ ||.|+++|.||++||+
T Consensus 4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~ 83 (167)
T 4ds2_A 4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPH 83 (167)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTT
T ss_pred cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCC
Confidence 455567899999999999876 67999999999999999999999999999 9999999999999999
Q ss_pred CCCeEEEeccCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHh
Q 033369 72 SPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSS 116 (121)
Q Consensus 72 ~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~ 116 (121)
+||+|+|.|++|||||+.+|+||+++|.++|+|++++.++|+++.
T Consensus 84 ~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l 128 (167)
T 4ds2_A 84 EPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVL 128 (167)
T ss_dssp SCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHH
T ss_pred CCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999765433
No 45
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.1e-39 Score=229.30 Aligned_cols=112 Identities=29% Similarity=0.507 Sum_probs=105.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCeEEe----ecCCCCc---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEE
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEGIKVG----VNDDDFS---TIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGY 77 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~~~v~----~~~~~~~---~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 77 (121)
.+.+..+.+||++|+++|+ +++|+++. ++++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+
T Consensus 24 ~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~ 100 (190)
T 3o2u_A 24 QPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV 100 (190)
T ss_dssp SCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred CCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence 4556678999999999999 67899998 7889999 9999997 78899999999999999999999999999
Q ss_pred EeccCcccCccCCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 78 FLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 78 f~t~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
|.|++|||||+.+|.||+++|.++|+|+++|.+||++|++++
T Consensus 101 f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll 142 (190)
T 3o2u_A 101 CLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF 142 (190)
T ss_dssp ECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred EecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 46
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-41 Score=228.27 Aligned_cols=106 Identities=25% Similarity=0.561 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC-
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT- 89 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~- 89 (121)
+.+||++|++++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~Rl~kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCc---CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 45899999999987 47889999999999999999999999999999999999999999999999999999999994
Q ss_pred CCceeccCCCCCCCCcCCHHHHHHH-Hhccc
Q 033369 90 NGEICVNTLKKDWNPSLGLRHVLIV-SSDGN 119 (121)
Q Consensus 90 ~G~icl~~l~~~W~p~~~i~~vl~~-i~~~~ 119 (121)
+|.||+++|.++|+|+++|.+||.+ |++++
T Consensus 80 ~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll 110 (152)
T 2onu_A 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLL 110 (152)
T ss_dssp TCBBCHHHHHHHCCTTCCHHHHHHTHHHHHH
T ss_pred CCeEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998 56664
No 47
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.4e-40 Score=230.55 Aligned_cols=115 Identities=15% Similarity=0.314 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC---CCCeEEeecCCCCceEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCC
Q 033369 5 ENLPPNVIKQLAKELKSLDESP---PEGIKVGVNDDDFSTIFADIEGP-AGTPYEN-----------GVFRMKLLLSHDF 69 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~---~~~~~v~~~~~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~fp~~Y 69 (121)
..++..+.+||++||++|++++ +.|+++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++|
T Consensus 22 ~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y 101 (186)
T 1zuo_A 22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence 4567789999999999999987 68899999999999999999998 9999998 8999999999999
Q ss_pred CCCCCeEEEeccCccc-CccCCCceeccCCC-CCCCCcCCHHHHHHHHhccc
Q 033369 70 PHSPPKGYFLTKIFHP-NIATNGEICVNTLK-KDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 70 P~~pP~v~f~t~i~Hp-nv~~~G~icl~~l~-~~W~p~~~i~~vl~~i~~~~ 119 (121)
|++||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||++|++++
T Consensus 102 P~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL 153 (186)
T 1zuo_A 102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATL 153 (186)
T ss_dssp TSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999 69999999999997 79999999999999999875
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=3.6e-39 Score=248.11 Aligned_cols=111 Identities=36% Similarity=0.691 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCcc
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIA 88 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (121)
+.+.|||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCcCCHHHHHHHHhccc
Q 033369 89 TNGEICVNTLKKDWNPSLGLRHVLIVSSDGN 119 (121)
Q Consensus 89 ~~G~icl~~l~~~W~p~~~i~~vl~~i~~~~ 119 (121)
.+|.||+++|.++|+|++||.+||.+|++++
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll 112 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLL 112 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 49
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-40 Score=227.67 Aligned_cols=106 Identities=25% Similarity=0.556 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
.+.+||++|+++|++ +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 578999999999985 68888877 57899999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHH-Hhccc
Q 033369 90 -NGEICVNTLKKDWNPSLGLRHVLIV-SSDGN 119 (121)
Q Consensus 90 -~G~icl~~l~~~W~p~~~i~~vl~~-i~~~~ 119 (121)
+|.||+++|.++|+|+++|.+||++ |++++
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll 132 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLL 132 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHH
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 98875
No 50
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=236.72 Aligned_cols=116 Identities=29% Similarity=0.582 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCC----eEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 5 ENLPPNVIKQLAKELKSLDESPPEG----IKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~~~~~~~----~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
..++..+.+||++|+++|++++++| +.+.++++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 4578899999999999999987764 557788999999999999999999999999999999999999999999999
Q ss_pred c-----CcccCccCCCceeccCCC-------CCCCCcC-CHHHHHHHHhcccC
Q 033369 81 K-----IFHPNIATNGEICVNTLK-------KDWNPSL-GLRHVLIVSSDGNF 120 (121)
Q Consensus 81 ~-----i~Hpnv~~~G~icl~~l~-------~~W~p~~-~i~~vl~~i~~~~~ 120 (121)
+ +|||||+.+|+||+++|. ++|+|++ +|.+||++|++++.
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~ 203 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLIL 203 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTS
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHc
Confidence 8 999999999999999997 6899999 89999999999874
No 51
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-39 Score=224.90 Aligned_cols=106 Identities=25% Similarity=0.575 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccC
Q 033369 10 NVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIAT 89 (121)
Q Consensus 10 ~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (121)
++.+||++|+++|++++. + + ..++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~--v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-K--V-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-C--E-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-C--C-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 456999999999999763 4 3 35789999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeccCCCCCCCCcCCHHHHHHHH-hccc
Q 033369 90 -NGEICVNTLKKDWNPSLGLRHVLIVS-SDGN 119 (121)
Q Consensus 90 -~G~icl~~l~~~W~p~~~i~~vl~~i-~~~~ 119 (121)
+|.||+++|.++|+|+++|.+||++| ++++
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll 119 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLL 119 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999997 5553
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.97 E-value=3e-32 Score=185.49 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeEE
Q 033369 8 PPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENG----------VFRMKLLLSHDFPHSPPKGY 77 (121)
Q Consensus 8 s~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v~ 77 (121)
.....+||++|+++|++ ++.++++|+..|++.+.||++|+|+|| .|+++++||++||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 46779999999999998 467788899999999999999999999 99999999999999999999
Q ss_pred Eecc-CcccCccCCCceeccCCC-C---CCCCcCCHHHHHH
Q 033369 78 FLTK-IFHPNIATNGEICVNTLK-K---DWNPSLGLRHVLI 113 (121)
Q Consensus 78 f~t~-i~Hpnv~~~G~icl~~l~-~---~W~p~~~i~~vl~ 113 (121)
|.+. +||||||.+|+||||+|. . .|+|+++|.++|.
T Consensus 104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 104 VPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp CGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred eCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 9998 999999999999999994 3 5669999999984
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.86 E-value=8.6e-23 Score=136.39 Aligned_cols=98 Identities=26% Similarity=0.318 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeEEE
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENG----------VFRMKLLLSHDFPHSPPKGYF 78 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~YP~~pP~v~f 78 (121)
.....||.+||..|-+ +|+.++++-..|+..+.|+++|+|+|+ .|+++++||.+||.+||.|+|
T Consensus 33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence 5689999999999986 566677777899999999999999999 899999999999999999999
Q ss_pred ecc-CcccCccCCCceeccCCC----CCCCCcCCHHHHH
Q 033369 79 LTK-IFHPNIATNGEICVNTLK----KDWNPSLGLRHVL 112 (121)
Q Consensus 79 ~t~-i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~vl 112 (121)
.+. .+|||+|.+|+||||++. ..-.|.++|...|
T Consensus 107 p~ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 107 PELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp GGGTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred ccccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 995 899999999999999963 1224556676654
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=3.2e-20 Score=126.84 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcCCC---CCeEEeecCCCCceEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCeEEEec------
Q 033369 13 KQLAKELKSLDESPP---EGIKVGVNDDDFSTIFADIEGPAGTPYENGV---FRMKLLLSHDFPHSPPKGYFLT------ 80 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~---~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~fp~~YP~~pP~v~f~t------ 80 (121)
+|..+|..++.+.-+ +...+...++...++...+.|.-.++|+|+. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 456677777654322 2333445566677788888888889999999 8899999999999999998865
Q ss_pred -c---Cc-ccCccCCCceeccCCCCCCCC-cCCHHHHHHHHhccc
Q 033369 81 -K---IF-HPNIATNGEICVNTLKKDWNP-SLGLRHVLIVSSDGN 119 (121)
Q Consensus 81 -~---i~-Hpnv~~~G~icl~~l~~~W~p-~~~i~~vl~~i~~~~ 119 (121)
+ |+ |||||.+|+||+++|. +|+| +.++.++|.+|++++
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf 154 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLL 154 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTT
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHh
Confidence 1 77 9999999999999995 6999 689999999999875
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.61 E-value=7.8e-16 Score=103.52 Aligned_cols=76 Identities=21% Similarity=0.412 Sum_probs=67.1
Q ss_pred CCCceEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCeEEEecc------CcccCccCCCceeccCCCCCCCC-cCC
Q 033369 37 DDFSTIFADIEGPAGTPYENGVFRM--KLLLSHDFPHSPPKGYFLTK------IFHPNIATNGEICVNTLKKDWNP-SLG 107 (121)
Q Consensus 37 ~~~~~w~~~i~gp~~t~y~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~Hpnv~~~G~icl~~l~~~W~p-~~~ 107 (121)
.++..|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..|+|||.+|+||++.|.+ |++ ..+
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~sn 124 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSD 124 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCC
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCC
Confidence 57889999988 6899999984 899999999999999 6665 5899999999999999965 988 789
Q ss_pred HHHHHHHHhcc
Q 033369 108 LRHVLIVSSDG 118 (121)
Q Consensus 108 i~~vl~~i~~~ 118 (121)
|.+++..+++.
T Consensus 125 L~~ll~~l~~~ 135 (146)
T 3obq_A 125 LLGLIQVMIVV 135 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 56
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0034 Score=40.85 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCCCCeEEeecC-------CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCC
Q 033369 1 MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVND-------DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSP 73 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~~l~~~~~~~~~v~~~~-------~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~p 73 (121)
|+.+.........+...|+..|+.--+..+.+. +. +....+.+.+....+ .-..-.+.+.+.+|++||..+
T Consensus 1 m~~~~~~~~~~~e~q~~EleaL~SIY~d~~~~~-~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~ 78 (138)
T 2yz0_A 1 MSLSHLTLDQYYEIQCNELEAIRSIYMDDFTDL-TKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTA 78 (138)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHTTSSSSEECC-STTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSC
T ss_pred CCccccCccchHHHHHHHHHHHHHHChhhheec-ccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCC
Confidence 454433224445667888888876433333321 11 124566777763322 112347889999999999999
Q ss_pred CeEEEecc
Q 033369 74 PKGYFLTK 81 (121)
Q Consensus 74 P~v~f~t~ 81 (121)
|.|.+.+.
T Consensus 79 P~i~l~~~ 86 (138)
T 2yz0_A 79 PEIEFKNV 86 (138)
T ss_dssp CEEEEECC
T ss_pred CeEEEecC
Confidence 99998753
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.99 E-value=0.0045 Score=39.71 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
...+...|+..|+.--+..+.+ ..+....+.+.+....+..-+.-.+.+.+.+|++||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3456788998887643344443 2222355665555322222234478999999999999999998876
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.67 E-value=0.018 Score=36.83 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCeEEeecC--CCCceEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 14 QLAKELKSLDESPPEGIKVGVND--DDFSTIFADIEGPAGTPY--ENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 14 Rl~~El~~l~~~~~~~~~v~~~~--~~~~~w~~~i~gp~~t~y--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
+...|+..|+.--+..+.+.... .+...+.+.+..+.+..- ..-.+.+.+.+|++||..+|.|...+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 57788888876444445443221 123445555542222111 124688999999999999999988763
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.78 E-value=0.066 Score=34.43 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-----CCceEEEEEeCCCC-C-CCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 11 VIKQLAKELKSLDESPPEGIKVGVNDD-----DFSTIFADIEGPAG-T-PYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 11 ~~~Rl~~El~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~gp~~-t-~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
...+...|+..|+.--+..+.+..... ......+.+. +.+ . .-..-.+.+.+.||++||..+|.|.+..
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 11 YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred hHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 345678888888764334444321111 1344555565 221 1 0012468999999999999999998853
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.73 E-value=0.11 Score=35.84 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCc
Q 033369 13 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGE 92 (121)
Q Consensus 13 ~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 92 (121)
.+|.+|+.++-=+. +.-.++++....+.+.... |....++|.++.+||.++|.+...-|. |.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------ 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF------ 65 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC------
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------
Confidence 36788888873211 2223457888888887433 678999999999999999988666553 11
Q ss_pred eeccCCCCCCCCcCCHHHHHHHHhcc
Q 033369 93 ICVNTLKKDWNPSLGLRHVLIVSSDG 118 (121)
Q Consensus 93 icl~~l~~~W~p~~~i~~vl~~i~~~ 118 (121)
.-.|+|..++.+++...+.+
T Consensus 66 ------~~~w~~~ssL~~v~~qF~~~ 85 (186)
T 3zqs_A 66 ------CASWTPQSSLISIYSQFLAA 85 (186)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHH
T ss_pred ------ccccCCCccHHHHHHHHHHH
Confidence 13799989999998877654
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.20 E-value=0.022 Score=36.43 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCC--CCeEEee-cCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEec
Q 033369 14 QLAKELKSLDESPP--EGIKVGV-NDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLT 80 (121)
Q Consensus 14 Rl~~El~~l~~~~~--~~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (121)
+...|+..|+.--+ ..+.+.- ...+...+.+.+.... ..-..-.+.+.+.+|++||..+|.+...+
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~-~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEG-FMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCT-TTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCC-CCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 45678888875321 1333211 1122457777776322 11112478999999999999999987663
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.06 E-value=0.1 Score=34.52 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 033369 58 VFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+.++|.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.03 E-value=0.064 Score=35.35 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 033369 58 VFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
.+.+.+.+|.+||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999988764
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=83.78 E-value=1.4 Score=19.79 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCe
Q 033369 9 PNVIKQLAKELKSLDESPPEGI 30 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~ 30 (121)
-+-+.||.-|+...|.++|.|.
T Consensus 4 lseldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 4 LSELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHHhhhccCCCCCC
Confidence 3457899999999999998774
No 65
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=48.71 E-value=10 Score=22.58 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q 033369 9 PNVIKQLAKELKSL 22 (121)
Q Consensus 9 ~~~~~Rl~~El~~l 22 (121)
-+.+||+++||+-|
T Consensus 61 LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 61 ISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCC
Confidence 36789999999887
No 66
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=41.04 E-value=24 Score=17.78 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhc
Q 033369 9 PNVIKQLAKELKSLDE 24 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~ 24 (121)
.+.++|+..|++.+.+
T Consensus 27 v~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 27 KSKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3568999999998753
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=41.01 E-value=80 Score=21.21 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 033369 37 DDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTK 81 (121)
Q Consensus 37 ~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (121)
+.-.+|.+.+.|+.+.--..-+=++.+.+.+.||. |.-.+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45779999999887654444567788889999975 55555544
No 68
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=36.61 E-value=36 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeEEEec
Q 033369 55 ENGVFRMKLLLSHDFPH-----SPPKGYFLT 80 (121)
Q Consensus 55 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 80 (121)
+.|.|.|+=.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46889999999999998 788888773
No 69
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=35.76 E-value=25 Score=20.49 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=9.0
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 033369 1 MATNENLPPNVIKQLAKELK 20 (121)
Q Consensus 1 m~~~~~~s~~~~~Rl~~El~ 20 (121)
|++++..+..++|+..+.|+
T Consensus 7 M~s~~ss~i~q~rk~VeQLr 26 (77)
T 3v5w_G 7 MASNNTASIAQARKLVEQLK 26 (77)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHH
Confidence 78887777777777766555
No 70
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=32.18 E-value=63 Score=17.45 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.8
Q ss_pred EEEEcCCCCCC
Q 033369 61 MKLLLSHDFPH 71 (121)
Q Consensus 61 ~~i~fp~~YP~ 71 (121)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 46788999984
No 71
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=31.60 E-value=1.1e+02 Score=19.84 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=32.0
Q ss_pred CceEE--EEEeCCCCCCCC-CcEEEEEEEcCCCCCCCCCeEEEeccCc
Q 033369 39 FSTIF--ADIEGPAGTPYE-NGVFRMKLLLSHDFPHSPPKGYFLTKIF 83 (121)
Q Consensus 39 ~~~w~--~~i~gp~~t~y~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (121)
..+|. +.+.|+.+.... .-+=++.+.+.++|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 46998 888998887654 4566788888899874 7777776544
No 72
>4div_S ORF46; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=31.01 E-value=1.3e+02 Score=20.72 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEeecCCCCceEEEEEeCC---CCCCCCCcEEEEEEEcCCCCC
Q 033369 9 PNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGP---AGTPYENGVFRMKLLLSHDFP 70 (121)
Q Consensus 9 ~~~~~Rl~~El~~l~~~~~~~~~v~~~~~~~~~w~~~i~gp---~~t~y~gg~f~~~i~fp~~YP 70 (121)
....+++.+|++++.... ....+..+++.-..|.+.+.+. ++..+ .+.+.+.+.+|+-|-
T Consensus 85 ~~~~~~~~~~l~~~L~~~-~~~~Lif~depd~~y~a~~~~~~~~~~~~~-~~~~titf~cpdPy~ 147 (253)
T 4div_S 85 PRVLQEKFDTLKAFLIRQ-EDVPIIFNDDLEYTFYGRFKTADNVAGDTN-SIISSFTVLCSDPFK 147 (253)
T ss_dssp HHHHHHHHHHHHHHHCCS-SCEEEEESSCCSCEEEEEEEEECCCCSSSS-EEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCcC-CcEEEEEcCCCCEEEEEEEcccccCCCcce-EEEEEEEEEecCCcE
Confidence 345566777888776532 2356666665557899988874 33322 245666666664443
No 73
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=28.00 E-value=28 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCCCeEEEec---cCcccCccCCCceeccCCCC
Q 033369 71 HSPPKGYFLT---KIFHPNIATNGEICVNTLKK 100 (121)
Q Consensus 71 ~~pP~v~f~t---~i~Hpnv~~~G~icl~~l~~ 100 (121)
..||.|.+.- .--|++|.++|..|+++|.+
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 3688887763 35688999999999999864
No 74
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=27.78 E-value=33 Score=15.60 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhc
Q 033369 11 VIKQLAKELKSLDE 24 (121)
Q Consensus 11 ~~~Rl~~El~~l~~ 24 (121)
--|++.+|+..|++
T Consensus 11 dKR~lLkeyY~L~~ 24 (26)
T 2c5k_P 11 DRRLLLREFYNLEN 24 (26)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhc
Confidence 34668899988875
No 75
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=26.97 E-value=1.8e+02 Score=20.89 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCc--eec
Q 033369 49 PAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGE--ICV 95 (121)
Q Consensus 49 p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~--icl 95 (121)
|+-+--|...|-.+++=.. ..||.+.|....--+.+|++|. +|.
T Consensus 194 pDPskNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 194 PDPSRNDNCRYFGRVVGGA---ATPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp ECTTSCCSEEEEEEEECCS---SCCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CCCCcCcCceeeEEecCCC---CCCCeEEecCceeEEEEcCCCcccccc
Confidence 3333444444444444322 3489999999888889998764 664
No 76
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=25.00 E-value=72 Score=15.87 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 033369 5 ENLPPNVIKQLAKELKSLD 23 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~ 23 (121)
+.++..-.+||.+|-++-+
T Consensus 2 sels~~ekaRlrRERR~aK 20 (38)
T 3zs9_C 2 SELTEAEKRRLLRERRQKK 20 (38)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 3567888899999988754
No 77
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=25.00 E-value=94 Score=18.61 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=20.5
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEeccC
Q 033369 56 NGVFRMKLLLSHDFPHSPPKGYFLTKI 82 (121)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (121)
+..+...+.|+..|+. +|+|.+.-..
T Consensus 28 ~R~~~~~V~F~~~F~~-~P~V~v~l~~ 53 (101)
T 2ccv_A 28 TRELAKNITFASPYCR-PPVVLLSITQ 53 (101)
T ss_dssp CEEEEEEEECSSCCSS-CCEEEEEEEE
T ss_pred ceEEEEEeEeCcccCC-CCEEEEEeEE
Confidence 4468889999999985 9998877543
No 78
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=22.37 E-value=60 Score=14.31 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhh
Q 033369 11 VIKQLAKELKSLD 23 (121)
Q Consensus 11 ~~~Rl~~El~~l~ 23 (121)
..+.|.+|+++-+
T Consensus 9 lqkkirkelkqrq 21 (26)
T 1m46_B 9 LQKKIRKELKQRQ 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577888887643
No 79
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=22.17 E-value=2.2e+02 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.1
Q ss_pred CCCeEEEeccCcccCccCCCc--eec
Q 033369 72 SPPKGYFLTKIFHPNIATNGE--ICV 95 (121)
Q Consensus 72 ~pP~v~f~t~i~Hpnv~~~G~--icl 95 (121)
.||.+.|....--+.+|+||. +|.
T Consensus 249 TPPVlqftNt~TTvLLDENGVGpLCk 274 (383)
T 1sid_A 249 TPPVLQFTNTLTTVLLDENGVGPLCK 274 (383)
T ss_dssp CCCEEEEESSCEEECCCTTSCCCBCS
T ss_pred CCCeEEeccceeEEEEcCCCcccccc
Confidence 389999998888888898764 564
No 80
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=20.93 E-value=2.4e+02 Score=20.41 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=37.4
Q ss_pred CCeEEeecCCC---CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccCcccCccCCCc--eec
Q 033369 28 EGIKVGVNDDD---FSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGE--ICV 95 (121)
Q Consensus 28 ~~~~v~~~~~~---~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~--icl 95 (121)
+..++..+++. +..|. |+-+--|...|-.+++=.. ..||.+.|....--+-.|++|. +|.
T Consensus 183 p~~Ka~ldkdg~yPVE~W~-----PDPsrNENtRYFG~~tGG~---~TPPVl~ftNt~TTvLLDENGVGpLCk 247 (289)
T 4fmh_A 183 PQAKAKLDKDGNYPIEVWC-----PDPSKNENSRYYGSIQTGS---QTPTVLQFSNTLTTVLLDENGVGPLCK 247 (289)
T ss_dssp TTCEEEECSTTCSBTTTEE-----ECTTSCTTEEEEEEEECSS---SCCCEEEEETTCCEECCCTTSCCCBCG
T ss_pred chhheeeccCCccceEEEC-----CCCCcCcCceeeeEecCCC---CCCCeEEecCceeEEEEcCCCccccee
Confidence 44555555542 33453 4445555656655555432 3589999998888888898764 564
No 81
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=20.80 E-value=60 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.9
Q ss_pred CCcEEEEEEEcCCCCC-------CCCCeEEEec
Q 033369 55 ENGVFRMKLLLSHDFP-------HSPPKGYFLT 80 (121)
Q Consensus 55 ~gg~f~~~i~fp~~YP-------~~pP~v~f~t 80 (121)
+.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~V 166 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSL 166 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEEE
Confidence 3488999999999998 4789988874
No 82
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=20.73 E-value=58 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=21.1
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeEEEec
Q 033369 55 ENGVFRMKLLLSHDFP------------------HSPPKGYFLT 80 (121)
Q Consensus 55 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (121)
+.|.|.|+-.+|.-|| ..||-|.|.-
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~V 230 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYFV 230 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEEE
Confidence 3488999999999998 4688887763
No 83
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=20.59 E-value=87 Score=16.17 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 033369 5 ENLPPNVIKQLAKELKSLD 23 (121)
Q Consensus 5 ~~~s~~~~~Rl~~El~~l~ 23 (121)
+.++..-.+||.+|-++-+
T Consensus 12 ~~lsa~EkaRLrRERR~aK 30 (46)
T 3sjd_D 12 SELTEAEKRRLLRERRQKK 30 (46)
T ss_dssp ---CHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4677788899999987743
No 84
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=20.36 E-value=23 Score=20.71 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=9.6
Q ss_pred CCCCCCCCeEEE
Q 033369 67 HDFPHSPPKGYF 78 (121)
Q Consensus 67 ~~YP~~pP~v~f 78 (121)
-.||..||.|+.
T Consensus 69 it~Pn~Pp~V~~ 80 (84)
T 1f53_A 69 ITYPNRPPKVNS 80 (84)
T ss_dssp ECCSSSCCCCCB
T ss_pred eecCCCCCcccE
Confidence 368999999865
Done!