BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033370
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA 59
MYD + +G ++F+EF +L+ F+L ++ F + G G L + V AL+ G+ +
Sbjct: 71 MYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQT 130
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
F + FD+ + G L DD++ L IF+ RN+F +D + G++T + FI
Sbjct: 131 FQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFI 184
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLF 94
G G + + AL G + +D+N +G + D+F L F+ S R F
Sbjct: 40 GSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGF 99
Query: 95 NSFDTAKQGRITLDLNQ 111
D++ GR LD N+
Sbjct: 100 RKRDSSGDGR--LDSNE 114
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +GTM F EF EL L + F L+ R G + P + +AL +GF L A
Sbjct: 81 MLDRDMSGTMGFNEFKELWAVLNGWRQHFISLDTDRSGTVDPQELQKALTTMGFRLSPQA 140
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFC 115
++ + + + NG++ DD+I+ C+ L++ + F DTA+QG + + FI C
Sbjct: 141 VNSIAKRY--STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQC 194
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +GTM F EF EL L + F + R G + P + +AL +GF L A
Sbjct: 81 MLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQA 140
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFC 115
++ + + + NG++ DD+I+ C+ L++ + F DTA+QG + + FI C
Sbjct: 141 VNSIAKRY--STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQC 194
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +GTM F EF EL L + F + R G + P + +AL +GF L+
Sbjct: 50 MLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQT 109
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFC 115
++ + + + +G++ DD+I+ C+ L++ + F D+A+QG + + FI C
Sbjct: 110 VNSIAKRY--STSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQC 163
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 49 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 108
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 109 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 162
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 70 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 129
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 130 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 183
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 48 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 107
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 108 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 161
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 52 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGAGYRLSDQF 111
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 112 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 165
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 52 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 111
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 112 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 165
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDN-VYEALVKIGFSLDSPA 59
M+D + ++F EF + K++ Q+ F +R ++ N + +AL G+ L
Sbjct: 71 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQF 130
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 131 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 184
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAF 60
M+D + ++F EF + K++ Q+ F +R ++ N + + G+ L
Sbjct: 49 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS-GYRLSDQFH 107
Query: 61 YTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFI 113
+ FD+ G++ DDFI CI LQ ++F +DT + G I + Q++
Sbjct: 108 DILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYL 160
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA 59
M D D G M F F EL L + F +++ G G + + +A+ +G+ L
Sbjct: 48 MLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT 107
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQG 103
T+ + + +KNGR+ DD+++ C+ L++ + F D +QG
Sbjct: 108 LTTIVKRY--SKNGRIFFDDYVACCVKLRALTDFFKKRDHLQQG 149
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA 59
M D D G M F F EL L + F +++ G G + + +A+ +G+ L
Sbjct: 48 MLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT 107
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQG 103
T+ + + +KNGR+ DD+++ C+ L++ + F D +QG
Sbjct: 108 LTTIVKRY--SKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQG 149
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
+ D D G + FEEF L + K Q + E R G + + + A GF L+
Sbjct: 782 VMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHI 841
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + + ++ G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 842 YSMIIRRY-SDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT 897
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPAFY 61
D D G + FEEF L + K Q + + R G + + + A GF L+ +
Sbjct: 68 DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYS 127
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + ++ G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 128 MIIRRY-SDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT 181
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPAFY 61
D D G + FEEF L + K Q + + R G + + + A GF L+ +
Sbjct: 57 DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYS 116
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + ++ G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 117 MIIRRY-SDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT 170
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPAFY 61
D D G + FEEF L + K Q + + R G + + + A GF L+ +
Sbjct: 68 DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYS 127
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + ++ G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 128 MIIRRY-SDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT 181
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPAFY 61
D D G + FEEF L + K Q + + R G + + A GF L+ +
Sbjct: 57 DSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYS 116
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + ++ G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 117 MIIRRY-SDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT 170
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPAFY 61
D D G + FEEF L + + Q + + R G + + A GF L+ +
Sbjct: 68 DSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYN 127
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCT 116
+ + +++G + D+FIS + L + F S D G+I +++ +++ T
Sbjct: 128 MIIRRY-SDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT 181
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 29 FSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFI-SLCIF 86
F L+R G L D + L K+G LD VC +D+N +G L L++F+ +L
Sbjct: 43 FRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPP 102
Query: 87 LQSARN-----LFNSFDTAKQGRITLD 108
+ AR F D + G +T+D
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVD 129
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQH------AFSDLER-GRGYLVPDNVYEALVKIGFSL 55
D D +GT+ ++EF+ L K++ AF+ ++ G GY+ PD + +A + F +
Sbjct: 73 DVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEE--FGV 130
Query: 56 DSPAFYTVCESFDQNKNGRLRLDDFIS 82
+ + DQ+ +GR+ ++F++
Sbjct: 131 EDVRIEELXRDVDQDNDGRIDYNEFVA 157
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 24/116 (20%)
Query: 2 YDFDRNGTMSFEEFVELNKFLL------KVQHAFS--DLERGRGYLVPDN-------VYE 46
+D D NG +SFE+F++ LL K+ AF+ D+ + GY+ + +Y+
Sbjct: 111 FDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKD-GYITKEEMLDIMKAIYD 169
Query: 47 ALVKIGFSL---DSPAFY--TVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSF 97
+ K + + D+P + T + D+NK+G + +D+FI C Q N+ S
Sbjct: 170 MMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESC---QKDENIMRSM 222
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 66 SFDQNKNGRLRLDDFI-SLCIFLQSARN-----LFNSFDTAKQGRIT----LDLNQFIF 114
+FD + NG + +DFI L I L+ FN +D K G IT LD+ + I+
Sbjct: 110 AFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIY 168
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
++D D NG +SF EF+ + KF+ + F R R G L P + AL ++GF ++
Sbjct: 95 IFDTDFNGHISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRT 154
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFN 95
+ F + L+ +I++C F R+ +
Sbjct: 155 SLLLHRLFARGM-AFCDLNCWIAICAFAAQTRSAYQ 189
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
++D D NG +SF EF+ + KF+ + F +R R G L P + AL ++GF ++
Sbjct: 95 IFDTDFNGHISFYEFMAMYKFMELAYNLFVMNDRNRSGTLEPHEILPALQQLGFYINQRT 154
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFN 95
+ F + L+ +I++C F R+ +
Sbjct: 155 SLLLHRLFARGM-AFCDLNCWIAICAFAAQTRSAYQ 189
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +G + +EF L + K Q + +++ R G + + +AL + GF +
Sbjct: 582 MLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQL 641
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDL 109
+ F ++ + D+F+ + L++ +F D G I LDL
Sbjct: 642 HQVIVARFADDQL-IIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELDL 690
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 37 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI----FLQSARN 92
G L + + L KIG+ P + V D N +G++ DF++ I +L+
Sbjct: 72 GTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVC 131
Query: 93 L--FNSFDTAKQGRITLDLNQFIF 114
L F FD G+I+++ + IF
Sbjct: 132 LIPFKFFDIDGNGKISVEELKRIF 155
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQ------SARNLFNSFDTAKQGRIT 106
+ + D +KNG + +FIS+C+ Q R FN FDT K G+IT
Sbjct: 403 NILKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKIT 453
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 3 DFDRNGTMSFEEFVE--LNKFLL----KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLD 56
DFD+NG + + EF+ ++K +L +++ AF+ + + + L + S+
Sbjct: 409 DFDKNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLT-SIS 467
Query: 57 SPAFYTVCESFDQNKNGRLRLDDFISL 83
+ V DQNK+ + D+F+S+
Sbjct: 468 EKTWNDVLGEADQNKDNMIDFDEFVSM 494
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQH------AFSDLER-GRGYLVPDNVYEALVKIGFSL 55
D D++GT+ + EF+ L K++ AFS ++ G GY+ D + +A F L
Sbjct: 56 DIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKD--FGL 113
Query: 56 DSPAFYTVCESFDQNKNGRLRLDDFISL 83
D + + DQ+ +G++ +F ++
Sbjct: 114 DDIHIDDMIKEIDQDNDGQIDYGEFAAM 141
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 37 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF---LQSARNL 93
G + D + + L ++G L + ++ D +K+G + +FI+ + L+ NL
Sbjct: 25 GTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENL 84
Query: 94 ---FNSFDTAKQGRITLD 108
F+ FD G ITLD
Sbjct: 85 VSAFSYFDKDGSGYITLD 102
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +G + +EF L + K Q + +++ R G + + +AL + GF L
Sbjct: 583 MLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQL 642
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDL 109
+ F ++ + D+F+ + L+ +F D G I LDL
Sbjct: 643 HQVIVARFADDEL-IIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDL 691
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +G + +EF L + K Q + +++ R G + + +AL + GF L
Sbjct: 583 MLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQL 642
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDL 109
+ F ++ + D+F+ + L+ +F D G I LDL
Sbjct: 643 HQVIVARFADDEL-IIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDL 691
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGR-GYLVPDNVYEALVKIGFSLDSPA 59
M D D +G + +EF L + K Q + +++ R G + + +AL + GF L
Sbjct: 583 MLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQL 642
Query: 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDL 109
+ F ++ + D+F+ + L+ +F D G I LDL
Sbjct: 643 HQVIVARFADDEL-IIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDL 691
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLLKVQHAFSDLERGRGYLVPDN-----VYEALVKIGFS 54
DFD+NG + + EFV + K LL + LER DN E G S
Sbjct: 415 DFDKNGYIEYSEFVTVAMDRKTLLSRER----LERAFRMFDSDNSGKISSTELATIFGVS 470
Query: 55 -LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87
+DS + +V D+N +G + D+F + + L
Sbjct: 471 DVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 504
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLLKVQHAFSDLERGRGYLVPDN-----VYEALVKIGFS 54
DFD+NG + + EFV + K LL + LER DN E G S
Sbjct: 416 DFDKNGYIEYSEFVTVAMDRKTLLSRER----LERAFRMFDSDNSGKISSTELATIFGVS 471
Query: 55 -LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87
+DS + +V D+N +G + D+F + + L
Sbjct: 472 DVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 505
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLL---KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLD 56
DFD+NG + + EFV + K LL +++ AF + + + + +D
Sbjct: 392 DFDKNGYIEYSEFVTVAXDRKTLLSRERLERAFRXFDSDNSGKISSTELATIFGVS-DVD 450
Query: 57 SPAFYTVCESFDQNKNGRLRLDDF 80
S + +V D+N +G + D+F
Sbjct: 451 SETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 32.3 bits (72), Expect = 0.078, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLLKVQHAFSDLERGRGYLVPDN-----VYEALVKIGFS 54
DFD+NG + + EFV + K LL + LER DN E G S
Sbjct: 392 DFDKNGYIEYSEFVTVAMDRKTLLSRER----LERAFRMFDSDNSGKISSTELATIFGVS 447
Query: 55 -LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87
+DS + +V D+N +G + D+F + + L
Sbjct: 448 DVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 481
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEAL 48
+ + NG + EEF L K L+ QH F ++ G L+ ++++A+
Sbjct: 54 LMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAI 101
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERG--------RGYLVPDNVYEALVKIGFS 54
D D NGT+ F+EF+ L +K A +L+ GY+ + ++ +G
Sbjct: 56 DADGNGTIEFDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + + D + +G++ ++F+ + +
Sbjct: 116 LTDEEVEQMIKEADLDGDGQVNYEEFVKMMM 146
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 3 DFDRNGTMSFEEFVE--LNKFLL----KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLD 56
DFDRNG + + EFV ++K LL ++ AF + + + L + +D
Sbjct: 371 DFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVT-EVD 429
Query: 57 SPAFYTVCESFDQNKNGRLRLDDFISL 83
++ V + D+N +G + ++F+ +
Sbjct: 430 DETWHQVLQECDKNNDGEVDFEEFVEM 456
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 63 VCESFDQNKNGRLRLDDFISLC----IFLQSARNL--FNSFDTAKQGRIT 106
+ +S D ++NG + +F+++C + L R L F FD+ G+IT
Sbjct: 366 ILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKIT 415
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLL---KVQHAFSDLER-GRGYLVPDNVYEALVKIGFSL 55
DFDRNG + + EFV + K LL K++ AF ++ G G + D + F L
Sbjct: 400 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV-----FGL 454
Query: 56 D---SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
D S + + D N +G + DF C +Q
Sbjct: 455 DHLESKTWKEMISGIDSNNDGDV---DFEEFCKMIQ 487
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 357 DADGNGTIDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 417 LTDEEVDEMIREADIDGDGQVNYEEFVQM 445
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/90 (18%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MYDFDRNGTMSFEEFVE--LNKFLL----KVQHAFSDLER-GRGYLVPDNVYEALVKIGF 53
+ D D +G++ + EF+ +++ +L +++ AF ++ G G + +++ +
Sbjct: 389 LLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADS 448
Query: 54 SLDSPAFYTVCESFDQNKNGRLRLDDFISL 83
S+ ++ E D NK+G + ++F+ +
Sbjct: 449 SIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 357 DADGNGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 417 LTDEEVDEMIREADIDGDGQVNYEEFVQM 445
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 357 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 417 LTDEEVDEMIREADIDGDGQVNYEEFVQM 445
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 358 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 417
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 418 LTDEEVDEMIREADIDGDGQVNYEEFVQM 446
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 357 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 417 LTDEEVDEMIREADIDGDGQVNYEEFVQM 445
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 3 DFDRNGTMSFEEFVEL---NKFLL---KVQHAFSDLER-GRGYLVPDNVYEALVKIGFSL 55
DFDRNG + + EFV + K LL K++ AF ++ G G + D + F L
Sbjct: 117 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV-----FGL 171
Query: 56 D---SPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
D S + + D N +G + DF C +Q
Sbjct: 172 DHLESKTWKEMISGIDSNNDGDV---DFEEFCKMIQ 204
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 320 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 379
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 380 LTDEEVDEMIREADIDGDGQVNYEEFVQM 408
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 323 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 382
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 383 LTDEEVDEMIREADIDGDGQVNYEEFVQM 411
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 323 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 382
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
L + D + +G++ ++F+ +
Sbjct: 383 LTDEEVDEMIREADIDGDGQVNYEEFVQM 411
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 3 DFDRNGTMSFEEFVE--LNKFLL----KVQHAFSDLER-GRGYLVPDNVYEALVKI-GFS 54
DFDRNG + + EFV ++K LL ++ AF + G G + E L ++ G +
Sbjct: 97 DFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITN----EELGRLFGVT 152
Query: 55 -LDSPAFYTVCESFDQNKNGRLRLDDFISL 83
+D ++ V + D+N +G + ++F+ +
Sbjct: 153 EVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 63 VCESFDQNKNGRLRLDDFISLC----IFLQSARNL--FNSFDTAKQGRIT 106
+ +S D ++NG + +F+++C + L R L F FD+ G+IT
Sbjct: 92 ILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKIT 141
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 21/100 (21%)
Query: 2 YDFDRNGTMSFEEFV------ELNKFLLKVQHAFS--DLERGRGYLVPDNVYE------- 46
+D + +GT+ F EF+ K K++ AFS DL+ G GY+ + E
Sbjct: 72 FDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLD-GNGYISKAEMLEIVQAIYK 130
Query: 47 ---ALVKIGFSLDSPAFYT--VCESFDQNKNGRLRLDDFI 81
+++K+ +P T + D N++G+L L++FI
Sbjct: 131 MVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 18/85 (21%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFS---DLERGRGYLVPDNVYEALVKIGFSLDS 57
+YD DRNG + +E +++ + + K++ A S + E+ L P+ V + +
Sbjct: 103 IYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRI--------- 153
Query: 58 PAFYTVCESFDQNKNGRLRLDDFIS 82
F V D+N +G+L L++F+
Sbjct: 154 --FLLV----DENGDGQLSLNEFVE 172
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 62 TVCESFDQNKNGRLRLDDFISLCIFLQ----SARNLFNSFDTAKQGRIT 106
+V + D N++GRL ++F +LC L+ A +F D + G IT
Sbjct: 31 SVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAIT 79
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + ++G
Sbjct: 56 DRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + + D + +G++ ++F+ + +
Sbjct: 116 LSDEEVDEMIRAADTDGDGQVNYEEFVRVLV 146
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 54 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 114 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 143
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDQMIREADIDGDGQVNYEEFVQMM 146
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 53 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 112
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 113 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 142
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 54 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 114 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 143
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 60 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 119
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 120 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 149
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 58 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 117
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 118 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 147
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 116 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 52 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 111
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 112 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 141
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 54 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 114 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 143
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 62 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 121
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 122 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 151
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 116 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 2 YDFDRNGTMSFEEFVELNKFLL------KVQHAFSDLERGRGYLVPDNVYEALVKIGFSL 55
+D D NG + FE+FV LL K++ AF+ + + + A++K + +
Sbjct: 138 FDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDM 197
Query: 56 DSPAFYTVC-------------ESFDQNKNGRLRLDDFISLCIFLQSARNLFNSF 97
Y + + D+N++G + +D+F+ C Q N+ NS
Sbjct: 198 MGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETC---QKDENIMNSM 249
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 55 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 114
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 115 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 144
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQ-------HAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L +K Q AF +R G G + + + +G
Sbjct: 56 DADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G + ++F+ + +
Sbjct: 116 LTDDEVDEMIREADIDGDGHINYEEFVRMMV 146
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQ-------HAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L +K Q AF +R G G + + + +G
Sbjct: 56 DADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G + ++F+ + +
Sbjct: 116 LTDDEVDEMIREADIDGDGHINYEEFVRMMV 146
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 47 ALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
A+ +GF + P + +D+ NG + DDF+ +
Sbjct: 32 AMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIM 69
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + K + ++L R GY+ + + E
Sbjct: 63 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFRAS 122
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + ++ + D+N +GR+ D+F+ + +Q
Sbjct: 123 GEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEX 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEX 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+ +
Sbjct: 116 LTDEEVDEMIREADIDGDGQVNYEEFVQMM 145
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 63 VCESFDQNKNGRLRLDDFISLCI 85
V E FD+NK+G+L LD+F + +
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVAL 28
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-----VQHAFSDLER-GRGYLVPDNVYEALVKIGFSLD 56
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G L
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 115
Query: 57 SPAFYTVCESFDQNKNGRLRLDDFISLC 84
+ D + +G++ ++F+++
Sbjct: 116 DEEVDEMIREADIDGDGQVNYEEFVTMM 143
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE 33
+YD DR+G +S E +++ + ++ VQ LE
Sbjct: 122 LYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLE 154
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-----------GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + +K E GY+ + + E
Sbjct: 63 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRAS 122
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + ++ + D+N +GR+ D+F+ + +Q
Sbjct: 123 GEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 31 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC--IFLQ 88
D ER G++ + + L + G ++ AF + D NG+++ +F+S+ Q
Sbjct: 16 DSER-TGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQ 74
Query: 89 SA-----RNLFNSFDTAKQGRI 105
+ R F +FD G I
Sbjct: 75 TTSEDILRQAFRTFDPEGTGYI 96
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PDNVYEALVKIGFSLDSPAFY 61
P++VY++L IG+ D+PA Y
Sbjct: 193 PESVYDSLKNIGYIGDTPASY 213
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PDNVYEALVKIGFSLDSPAFY 61
P++VY++L IG+ D+PA Y
Sbjct: 194 PESVYDSLKNIGYIGDTPASY 214
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|B Chain B, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|C Chain C, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8V|D Chain D, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
Length = 474
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PDNVYEALVKIGFSLDSPAFY 61
P++VY++L IG+ D+PA Y
Sbjct: 193 PESVYDSLKNIGYIGDTPASY 213
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PDNVYEALVKIGFSLDSPAFY 61
P++VY++L IG+ D+PA Y
Sbjct: 193 PESVYDSLKNIGYIGDTPASY 213
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PDNVYEALVKIGFSLDSPAFY 61
P++VY++L IG+ D+PA Y
Sbjct: 193 PESVYDSLKNIGYIGDTPASY 213
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER--------GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L +K + +L+ G G++ + + +G
Sbjct: 56 DADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G++ ++F+ + +
Sbjct: 116 LTDEEVDEMIREADVDGDGQVNYEEFVQVMM 146
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ F+EF+ + + K + SDL R GY+ D + L
Sbjct: 65 DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQAT 124
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82
G ++ + + D+N +GR+ D+F+
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER--------GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L +K + +L+ G G++ + + +G
Sbjct: 53 DADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 112
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G++ ++F+ + +
Sbjct: 113 LTDEEVDEMIREADVDGDGQVNYEEFVQVMM 143
>pdb|3ZWH|A Chain A, Ca2+-Bound S100a4 C3s, C81s, C86s And F45w Mutant
Complexed With Myosin Iia
pdb|3ZWH|B Chain B, Ca2+-Bound S100a4 C3s, C81s, C86s And F45w Mutant
Complexed With Myosin Iia
Length = 104
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 27 HAFSDLERGRGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFI 81
H +S E + L + E L + +G D AF + + D N++ + DF
Sbjct: 20 HKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEV---DFQ 76
Query: 82 SLCIFLQSARNLFNSF 97
C+FL S + N F
Sbjct: 77 EYCVFLSSIAMMSNEF 92
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ F+EF+ + + K + SDL R GY+ D + L
Sbjct: 65 DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQAT 124
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82
G ++ + + D+N +GR+ D+F+
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAF 60
+YD +++G ++ EE +++ K + + A++ Y L + D+P
Sbjct: 97 LYDINKDGYINKEEMMDIVKAIYDMMGAYT--------------YPVLAE-----DTPRQ 137
Query: 61 YTVC--ESFDQNKNGRLRLDDFISLC 84
+ + D+NK+G + LD+F+ C
Sbjct: 138 HVDVFFQKMDKNKDGIVTLDEFLESC 163
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+++
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 146
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLERG--------RGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L +K + +L+ G++ + + +G
Sbjct: 57 DADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G++ D+F+ + +
Sbjct: 117 LTDEEVDEMIREADVDGDGQINYDEFVKVMM 147
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+++
Sbjct: 116 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 145
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+++
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 146
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+++
Sbjct: 116 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 145
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 24 KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 68
KVQ AF E G + + + EA+VK +LD F+ E +D
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD---FFIHTEEWD 75
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLL-------KVQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ L + K++ AF ++ G G++ + + +G
Sbjct: 56 DADGNGTIDFPEFLNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85
L + D + +G++ ++F+ + +
Sbjct: 116 LTDEEVDEMIREADVDGDGQVNYEEFVQVMM 146
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 2 YDFDRNGTMSFEEFVELNKFLL------KVQHAFS--DLERGRGYL-------VPDNVYE 46
+D + G++ FE+FV LL K++ F+ D+ + GY+ + +Y+
Sbjct: 98 FDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD-GYINKEEMMDIVKAIYD 156
Query: 47 ALVKIGFSL---DSPAFYTVC--ESFDQNKNGRLRLDDFISLC 84
+ K + + D+P + + D+NK+G + LD+F+ C
Sbjct: 157 MMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G G++ + + +G
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + D + +G++ ++F+++
Sbjct: 117 LTDEEVDEMIRESDIDGDGQVNYEEFVTMM 146
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK------VQHAFSDLER-GRGYLVPDNVYEALVKIGFSL 55
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G L
Sbjct: 52 DADGNGTIDFPEFLTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 111
Query: 56 DSPAFYTVCESFDQNKNGRLRLDDFISLC 84
+ + + +G++ ++F+ +
Sbjct: 112 TDEEVDEMIREANIDGDGQVNYEEFVQMM 140
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 2 YDFDRNGTMSFEEFVELNKFLL------KVQHAFS--DLERGRGYL-------VPDNVYE 46
+D + G++ FE+FV LL K++ F+ D+ + GY+ + +Y+
Sbjct: 62 FDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD-GYINKEEMMDIVKAIYD 120
Query: 47 ALVKIGFSL---DSPAFYTVC--ESFDQNKNGRLRLDDFISLC 84
+ K + + D+P + + D+NK+G + LD+F+ C
Sbjct: 121 MMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 163
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ F+EF+ + + K + SDL R GY+ + + L
Sbjct: 65 DEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82
G ++ + + D+N +GR+ D+F+
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|2QK7|A Chain A, A Covalent S-f Heterodimer Of Staphylococcal
Gamma-hemolysin
Length = 288
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLF 94
R Y VPDN L++ GF +P+F T S ++ K + + + RN+
Sbjct: 195 ARDYFVPDNQLPPLIQSGF---NPSFITTL-SHEKGKGDKSEFE--------ITYGRNMD 242
Query: 95 NSFDTAKQGRITLDLNQFIFCTANCRI 121
++ + R+ +D F N +
Sbjct: 243 ATYAYVTRHRLAVDRKHDAFKNRNVTV 269
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 23/101 (22%)
Query: 1 MYDFDRNGTMSFEEFV---------ELNKFLLKVQHAFSDLERGRGYL-------VPDNV 44
++D D+NG + F+EF+ ELN L+ + DL+ G + + D +
Sbjct: 71 VFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLY-DLD-NNGLISYDEMLRIVDAI 128
Query: 45 YE---ALVKIGFSLDSPA--FYTVCESFDQNKNGRLRLDDF 80
Y+ ++VK+ D+P + D+NK+G+L L++F
Sbjct: 129 YKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
>pdb|3B07|B Chain B, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|D Chain D, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|F Chain F, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
pdb|3B07|H Chain H, Crystal Structure Of Octameric Pore Form Of
Gamma-Hemolysin From Staphylococcus Aureus
Length = 290
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLF 94
R Y VPDN L++ GF +P+F T S ++ K + + + RN+
Sbjct: 197 ARDYFVPDNQLPPLIQSGF---NPSFITTL-SHERGKGDKSEFE--------ITYGRNMD 244
Query: 95 NSFDTAKQGRITLDLNQFIFCTANCRI 121
++ + R+ +D F N +
Sbjct: 245 ATYAYVTRHRLAVDRKHDAFKNRNVTV 271
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ F+EF+ + + K + SDL R GY+ + + L
Sbjct: 65 DEDGSGTVDFDEFLVMMVRSMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQAT 124
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82
G ++ + + D+N +GR+ D+F+
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 DFDRNGTMSFEEFVELNKFLLK-------VQHAFSDLER-GRGYLVPDNVYEALVKIGFS 54
D D NGT+ F EF+ + +K ++ AF ++ G GY+ + + +G
Sbjct: 56 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
L + + + +G++ ++F+ +
Sbjct: 116 LTDEEVDEMIREANIDGDGQVNYEEFVQMM 145
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 3 DFDRNGTMSFEEFVEL------NKFLLKVQHAFSDLER-----GRGYLVPDNVYEALVKI 51
D D +GT+ F+EF+ + + K + SDL R GY+ D + L
Sbjct: 65 DEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQAT 124
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82
G ++ + + D+N +GR+ D+++
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRIDYDEWLE 155
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 37 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84
G + N+ ++G +L + E FD + +G + ++FI++C
Sbjct: 111 GKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-----------GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + +K E G++ + + E L
Sbjct: 66 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRAT 125
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + + + D+N +GR+ D+F+ + +Q
Sbjct: 126 GEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-----------GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + +K E G++ + + E L
Sbjct: 63 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRAT 122
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + + + D+N +GR+ D+F+ + +Q
Sbjct: 123 GEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-----------GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + +K E G++ + + E L
Sbjct: 66 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRAT 125
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + + + D+N +GR+ D+F+ + +Q
Sbjct: 126 GEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 3 DFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-----------GRGYLVPDNVYEALVKI 51
D D +GT+ FEEF+ + +K E G++ + + E L
Sbjct: 66 DEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRAT 125
Query: 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88
G + + + D+N +GR+ D+F+ + +Q
Sbjct: 126 GEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 22 LLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDF 80
L +++ AF +R G G++ + A+ +G+ + + + D + +G++ ++F
Sbjct: 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEF 94
Query: 81 ISLC 84
++L
Sbjct: 95 VTLL 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,603,907
Number of Sequences: 62578
Number of extensions: 135558
Number of successful extensions: 682
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 201
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)