Query 033370
Match_columns 121
No_of_seqs 118 out of 1508
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 100.0 5.4E-27 1.2E-31 146.3 13.1 119 1-119 102-221 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.7 8.1E-16 1.7E-20 93.5 11.1 97 21-118 18-122 (160)
3 KOG0027 Calmodulin and related 99.7 1.1E-15 2.3E-20 93.5 10.4 97 22-118 7-115 (151)
4 PTZ00183 centrin; Provisional 99.7 1.3E-14 2.7E-19 88.9 13.3 115 2-118 26-154 (158)
5 COG5126 FRQ1 Ca2+-binding prot 99.7 1.4E-14 3.1E-19 88.1 13.0 116 1-118 28-156 (160)
6 KOG0027 Calmodulin and related 99.6 4.2E-14 9.1E-19 86.4 12.4 116 1-118 16-149 (151)
7 PTZ00184 calmodulin; Provision 99.6 5.9E-14 1.3E-18 85.0 12.3 115 2-118 20-148 (149)
8 KOG0037 Ca2+-binding protein, 99.6 1.6E-14 3.4E-19 90.8 9.8 99 23-121 57-157 (221)
9 PTZ00183 centrin; Provisional 99.5 2.7E-13 5.8E-18 83.0 11.4 95 21-117 15-117 (158)
10 PTZ00184 calmodulin; Provision 99.5 5.4E-13 1.2E-17 80.8 11.9 93 21-115 9-109 (149)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.5 7.6E-13 1.7E-17 83.1 11.0 112 4-117 38-174 (193)
12 KOG0028 Ca2+-binding protein ( 99.5 1E-12 2.3E-17 79.0 9.4 115 1-117 41-169 (172)
13 KOG0028 Ca2+-binding protein ( 99.4 1E-11 2.2E-16 74.8 12.0 84 23-106 33-124 (172)
14 cd05022 S-100A13 S-100A13: S-1 99.4 3.6E-12 7.8E-17 71.0 8.7 70 20-89 5-78 (89)
15 KOG0030 Myosin essential light 99.4 3.5E-12 7.6E-17 75.1 9.0 100 22-121 10-121 (152)
16 PF13499 EF-hand_7: EF-hand do 99.4 2E-12 4.3E-17 68.3 7.3 61 24-84 1-66 (66)
17 KOG0044 Ca2+ sensor (EF-Hand s 99.4 3.1E-12 6.8E-17 80.3 8.9 96 2-97 73-186 (193)
18 KOG0034 Ca2+/calmodulin-depend 99.3 9.5E-12 2.1E-16 78.0 8.5 112 3-116 43-173 (187)
19 cd05027 S-100B S-100B: S-100B 99.3 6.3E-11 1.4E-15 66.0 10.6 69 20-88 5-81 (88)
20 KOG0034 Ca2+/calmodulin-depend 99.3 1.6E-10 3.5E-15 72.5 12.8 89 2-90 75-179 (187)
21 cd05029 S-100A6 S-100A6: S-100 99.3 8.8E-11 1.9E-15 65.4 10.3 71 19-89 6-82 (88)
22 KOG0036 Predicted mitochondria 99.3 3.7E-11 8E-16 82.0 9.0 86 1-86 59-146 (463)
23 PF13833 EF-hand_8: EF-hand do 99.3 6.3E-11 1.4E-15 60.1 7.1 52 35-86 1-53 (54)
24 cd05026 S-100Z S-100Z: S-100Z 99.2 4.1E-10 8.9E-15 63.4 10.8 71 19-89 6-84 (93)
25 cd05025 S-100A1 S-100A1: S-100 99.2 6.5E-10 1.4E-14 62.5 10.8 71 21-91 7-85 (92)
26 KOG0031 Myosin regulatory ligh 99.2 6.6E-10 1.4E-14 66.7 10.8 104 11-118 19-131 (171)
27 KOG0031 Myosin regulatory ligh 99.2 3.6E-10 7.9E-15 67.8 9.6 82 5-86 76-165 (171)
28 PLN02964 phosphatidylserine de 99.2 2.2E-10 4.8E-15 83.3 10.4 91 21-117 141-242 (644)
29 smart00027 EH Eps15 homology d 99.2 2.9E-10 6.3E-15 64.4 8.8 70 21-92 8-78 (96)
30 cd05031 S-100A10_like S-100A10 99.2 1.1E-09 2.4E-14 61.8 10.6 69 21-89 6-82 (94)
31 cd05023 S-100A11 S-100A11: S-1 99.2 1.1E-09 2.3E-14 61.2 10.0 70 20-89 6-83 (89)
32 cd00052 EH Eps15 homology doma 99.2 3.6E-10 7.7E-15 59.6 7.5 60 26-87 2-62 (67)
33 KOG0036 Predicted mitochondria 99.1 1.1E-09 2.3E-14 75.0 9.8 87 23-109 14-103 (463)
34 cd00213 S-100 S-100: S-100 dom 99.1 1.9E-09 4.1E-14 60.0 9.1 69 21-89 6-82 (88)
35 cd00051 EFh EF-hand, calcium b 99.1 1.3E-09 2.9E-14 55.9 7.3 60 25-84 2-62 (63)
36 KOG4223 Reticulocalbin, calume 99.1 6.7E-10 1.4E-14 73.8 7.4 112 2-113 122-267 (325)
37 KOG0038 Ca2+-binding kinase in 99.0 3.2E-09 6.9E-14 63.4 7.2 93 2-94 80-185 (189)
38 PF14658 EF-hand_9: EF-hand do 99.0 4.8E-09 1E-13 54.7 6.8 60 27-86 2-64 (66)
39 cd05024 S-100A10 S-100A10: A s 99.0 2.5E-08 5.3E-13 55.5 10.0 71 20-90 5-80 (91)
40 KOG0030 Myosin essential light 98.9 1.1E-08 2.4E-13 60.5 8.0 77 8-85 64-150 (152)
41 cd05030 calgranulins Calgranul 98.9 1.1E-08 2.3E-13 57.0 7.7 68 20-87 5-80 (88)
42 KOG0041 Predicted Ca2+-binding 98.9 1.4E-08 2.9E-13 63.7 8.4 75 12-86 87-163 (244)
43 cd00252 SPARC_EC SPARC_EC; ext 98.9 9.6E-09 2.1E-13 60.0 7.3 61 22-86 47-108 (116)
44 KOG2643 Ca2+ binding protein, 98.9 9.9E-09 2.1E-13 70.8 8.2 116 2-119 208-347 (489)
45 PLN02964 phosphatidylserine de 98.9 2E-08 4.3E-13 73.3 9.0 85 1-86 151-243 (644)
46 PF13499 EF-hand_7: EF-hand do 98.8 2.5E-08 5.3E-13 52.5 6.5 54 60-115 2-65 (66)
47 KOG4223 Reticulocalbin, calume 98.8 1.5E-07 3.2E-12 62.9 11.3 113 2-116 86-226 (325)
48 KOG2643 Ca2+ binding protein, 98.8 4.8E-08 1E-12 67.6 9.3 114 1-117 294-452 (489)
49 KOG0377 Protein serine/threoni 98.8 1.2E-07 2.5E-12 66.0 9.2 62 24-85 548-614 (631)
50 PF14788 EF-hand_10: EF hand; 98.7 1.2E-07 2.5E-12 46.9 6.1 50 38-87 1-50 (51)
51 PF00036 EF-hand_1: EF hand; 98.6 1.5E-07 3.3E-12 41.4 3.5 26 60-85 2-27 (29)
52 KOG0751 Mitochondrial aspartat 98.5 2.2E-06 4.7E-11 60.6 9.4 109 2-113 83-204 (694)
53 PF12763 EF-hand_4: Cytoskelet 98.4 4.3E-06 9.3E-11 47.9 8.6 64 23-88 10-73 (104)
54 PF00036 EF-hand_1: EF hand; 98.4 9.3E-07 2E-11 38.9 3.6 28 24-51 1-29 (29)
55 KOG0040 Ca2+-binding actin-bun 98.3 4.3E-06 9.4E-11 65.6 8.8 83 22-105 2252-2350(2399)
56 cd00252 SPARC_EC SPARC_EC; ext 98.3 4.8E-06 1E-10 48.7 6.1 60 56-117 46-107 (116)
57 cd00213 S-100 S-100: S-100 dom 98.3 6.5E-06 1.4E-10 45.7 6.3 58 58-117 8-78 (88)
58 cd00051 EFh EF-hand, calcium b 98.3 1.1E-05 2.4E-10 40.9 6.8 54 60-115 2-61 (63)
59 PF13405 EF-hand_6: EF-hand do 98.2 3.2E-06 6.9E-11 37.7 3.8 29 24-52 1-31 (31)
60 cd00052 EH Eps15 homology doma 98.2 5.6E-06 1.2E-10 43.3 5.4 54 61-116 2-59 (67)
61 smart00027 EH Eps15 homology d 98.2 7.3E-06 1.6E-10 46.3 6.1 58 58-117 10-71 (96)
62 cd05022 S-100A13 S-100A13: S-1 98.2 1E-05 2.2E-10 45.1 6.5 58 59-118 9-75 (89)
63 cd05025 S-100A1 S-100A1: S-100 98.2 1.2E-05 2.6E-10 45.1 6.5 59 58-118 9-80 (92)
64 KOG0377 Protein serine/threoni 98.2 5.3E-05 1.1E-09 53.2 10.5 92 23-116 464-613 (631)
65 cd05027 S-100B S-100B: S-100B 98.2 1.4E-05 3E-10 44.5 6.1 59 59-119 9-80 (88)
66 cd05026 S-100Z S-100Z: S-100Z 98.1 1.7E-05 3.6E-10 44.6 6.2 58 59-118 11-81 (93)
67 cd05031 S-100A10_like S-100A10 98.1 1.1E-05 2.4E-10 45.4 5.4 60 58-119 8-80 (94)
68 PF13833 EF-hand_8: EF-hand do 98.1 2.5E-05 5.4E-10 39.2 5.7 45 6-50 1-53 (54)
69 KOG2562 Protein phosphatase 2 98.1 3.7E-05 7.9E-10 54.0 8.0 110 2-114 234-377 (493)
70 cd05023 S-100A11 S-100A11: S-1 98.1 3.2E-05 6.9E-10 43.1 6.3 58 59-118 10-80 (89)
71 PRK12309 transaldolase/EF-hand 98.0 3.7E-05 8E-10 53.7 6.5 56 51-115 327-382 (391)
72 PF10591 SPARC_Ca_bdg: Secrete 97.9 6.6E-06 1.4E-10 47.9 1.8 57 24-82 55-112 (113)
73 PRK12309 transaldolase/EF-hand 97.9 8.3E-05 1.8E-09 52.0 7.3 51 23-86 334-385 (391)
74 PF13202 EF-hand_5: EF hand; P 97.9 3E-05 6.4E-10 32.8 3.2 20 63-82 4-23 (25)
75 cd05029 S-100A6 S-100A6: S-100 97.9 6.3E-05 1.4E-09 41.9 5.2 58 60-119 12-80 (88)
76 PF13202 EF-hand_5: EF hand; P 97.8 4.2E-05 9.1E-10 32.3 3.2 24 25-48 1-25 (25)
77 KOG0038 Ca2+-binding kinase in 97.8 0.00011 2.4E-09 44.3 5.5 86 26-111 74-172 (189)
78 KOG0751 Mitochondrial aspartat 97.7 0.00034 7.3E-09 50.0 7.7 116 1-117 116-277 (694)
79 KOG4251 Calcium binding protei 97.6 0.00017 3.7E-09 47.2 5.3 108 2-109 149-302 (362)
80 KOG4251 Calcium binding protei 97.6 0.00016 3.5E-09 47.2 4.6 59 23-81 101-163 (362)
81 KOG4666 Predicted phosphate ac 97.5 0.00022 4.7E-09 48.4 4.9 94 1-96 267-369 (412)
82 PF13405 EF-hand_6: EF-hand do 97.5 0.00021 4.5E-09 31.7 3.4 26 60-85 2-27 (31)
83 KOG0046 Ca2+-binding actin-bun 97.5 0.0007 1.5E-08 48.6 7.6 66 22-87 18-86 (627)
84 cd05030 calgranulins Calgranul 97.5 0.00075 1.6E-08 37.5 6.3 57 60-118 10-79 (88)
85 PF09279 EF-hand_like: Phospho 97.5 0.00043 9.3E-09 37.9 5.1 62 25-86 2-69 (83)
86 PF14788 EF-hand_10: EF hand; 97.5 0.00075 1.6E-08 33.4 5.3 43 9-51 1-50 (51)
87 PF14658 EF-hand_9: EF-hand do 97.4 0.0017 3.6E-08 34.0 6.3 50 1-50 6-64 (66)
88 cd05024 S-100A10 S-100A10: A s 96.9 0.009 1.9E-07 33.4 6.6 56 60-118 10-76 (91)
89 smart00054 EFh EF-hand, calciu 96.9 0.0014 3.1E-08 27.3 2.8 23 62-84 4-26 (29)
90 KOG0041 Predicted Ca2+-binding 96.9 0.0026 5.7E-08 40.5 4.9 57 58-116 99-161 (244)
91 PLN02952 phosphoinositide phos 96.9 0.019 4.1E-07 42.6 9.5 81 6-86 13-110 (599)
92 smart00054 EFh EF-hand, calciu 96.7 0.0029 6.3E-08 26.3 2.9 26 25-50 2-28 (29)
93 KOG4666 Predicted phosphate ac 96.7 0.0024 5.2E-08 43.5 3.7 87 23-109 259-352 (412)
94 PF05042 Caleosin: Caleosin re 96.6 0.045 9.8E-07 34.1 8.5 14 1-14 15-28 (174)
95 PF10591 SPARC_Ca_bdg: Secrete 96.6 0.0017 3.7E-08 37.8 2.0 62 52-115 48-113 (113)
96 KOG2562 Protein phosphatase 2 96.5 0.027 5.8E-07 40.2 7.8 83 2-84 287-377 (493)
97 KOG0040 Ca2+-binding actin-bun 96.4 0.0086 1.9E-07 48.3 5.5 59 58-118 2253-2324(2399)
98 PF05517 p25-alpha: p25-alpha 96.4 0.052 1.1E-06 33.4 7.9 62 26-87 2-70 (154)
99 PF12763 EF-hand_4: Cytoskelet 96.2 0.036 7.8E-07 31.8 5.9 46 6-51 22-72 (104)
100 KOG4065 Uncharacterized conser 96.0 0.049 1.1E-06 31.8 5.8 55 28-82 72-141 (144)
101 KOG0169 Phosphoinositide-speci 95.9 0.41 8.8E-06 36.4 11.5 82 2-87 145-233 (746)
102 KOG0169 Phosphoinositide-speci 95.6 0.037 8E-07 41.7 5.4 82 23-105 136-221 (746)
103 PF05042 Caleosin: Caleosin re 94.9 0.06 1.3E-06 33.6 4.1 95 24-120 8-126 (174)
104 PF09279 EF-hand_like: Phospho 94.7 0.12 2.6E-06 28.1 4.5 57 59-118 1-69 (83)
105 KOG3555 Ca2+-binding proteogly 94.6 0.081 1.8E-06 36.6 4.3 57 24-84 251-308 (434)
106 KOG4578 Uncharacterized conser 94.4 0.033 7.1E-07 38.2 2.2 61 25-85 335-397 (421)
107 KOG1029 Endocytic adaptor prot 94.2 0.13 2.8E-06 39.3 4.9 64 24-89 196-260 (1118)
108 KOG4347 GTPase-activating prot 93.7 0.14 3E-06 38.2 4.3 56 24-80 556-612 (671)
109 KOG0042 Glycerol-3-phosphate d 93.4 0.25 5.3E-06 36.6 5.1 66 23-88 593-659 (680)
110 KOG4578 Uncharacterized conser 92.8 0.16 3.5E-06 35.0 3.4 50 2-51 342-399 (421)
111 KOG1265 Phospholipase C [Lipid 92.8 1.4 2.9E-05 34.7 8.3 77 10-86 205-299 (1189)
112 KOG0035 Ca2+-binding actin-bun 92.7 1.2 2.7E-05 34.8 8.1 80 22-101 746-838 (890)
113 KOG3555 Ca2+-binding proteogly 92.6 0.46 1E-05 33.1 5.3 99 13-116 204-308 (434)
114 KOG1707 Predicted Ras related/ 92.6 1.5 3.2E-05 32.8 8.1 90 23-112 195-339 (625)
115 KOG1029 Endocytic adaptor prot 91.3 1.4 3.1E-05 34.0 6.9 60 25-86 15-77 (1118)
116 KOG4347 GTPase-activating prot 90.8 0.84 1.8E-05 34.3 5.4 49 56-105 553-607 (671)
117 PF14513 DAG_kinase_N: Diacylg 90.2 2.8 6E-05 25.4 6.8 63 8-70 6-81 (138)
118 PF09069 EF-hand_3: EF-hand; 89.8 2.3 4.9E-05 23.8 7.3 63 23-87 3-76 (90)
119 KOG1955 Ral-GTPase effector RA 88.9 1.4 3.1E-05 32.3 5.2 60 24-85 232-292 (737)
120 KOG2243 Ca2+ release channel ( 88.5 1.1 2.4E-05 37.2 4.8 58 26-84 4060-4118(5019)
121 PLN02952 phosphoinositide phos 88.4 6.8 0.00015 29.7 8.6 52 35-87 13-66 (599)
122 KOG4065 Uncharacterized conser 86.8 3.1 6.8E-05 24.5 4.8 59 55-115 63-142 (144)
123 KOG0046 Ca2+-binding actin-bun 84.4 4.8 0.0001 29.9 5.9 56 61-119 22-86 (627)
124 PLN02222 phosphoinositide phos 83.9 7.6 0.00016 29.3 6.9 63 23-86 25-90 (581)
125 PLN02228 Phosphoinositide phos 83.3 11 0.00023 28.5 7.4 63 23-86 24-92 (567)
126 PLN02230 phosphoinositide phos 82.9 12 0.00026 28.4 7.6 64 23-86 29-102 (598)
127 PF00404 Dockerin_1: Dockerin 82.3 2.4 5.3E-05 16.9 2.3 19 3-21 1-19 (21)
128 PF08976 DUF1880: Domain of un 82.1 1.4 2.9E-05 25.8 2.0 31 55-85 4-34 (118)
129 PF08414 NADPH_Ox: Respiratory 80.4 8.5 0.00019 21.9 6.3 61 24-87 28-93 (100)
130 KOG1955 Ral-GTPase effector RA 78.1 5 0.00011 29.7 4.2 30 22-51 264-294 (737)
131 KOG1707 Predicted Ras related/ 78.0 2.3 4.9E-05 31.9 2.5 61 23-86 315-377 (625)
132 KOG4403 Cell surface glycoprot 77.8 25 0.00054 25.7 7.5 114 6-119 41-184 (575)
133 PF01023 S_100: S-100/ICaBP ty 77.2 6.5 0.00014 18.7 4.7 30 21-50 4-36 (44)
134 KOG0506 Glutaminase (contains 75.2 23 0.0005 26.3 6.8 59 26-84 89-156 (622)
135 KOG3866 DNA-binding protein of 74.6 6 0.00013 27.5 3.6 60 26-85 247-323 (442)
136 PF11116 DUF2624: Protein of u 73.4 13 0.00029 20.5 7.9 51 37-87 13-63 (85)
137 KOG4004 Matricellular protein 72.4 1.7 3.6E-05 28.1 0.6 55 28-84 192-248 (259)
138 PLN02223 phosphoinositide phos 72.3 29 0.00062 26.1 6.8 64 23-86 16-92 (537)
139 KOG0998 Synaptic vesicle prote 72.3 1.7 3.8E-05 34.1 0.8 63 23-87 283-346 (847)
140 KOG3866 DNA-binding protein of 71.6 11 0.00024 26.2 4.4 75 40-116 225-322 (442)
141 PHA02105 hypothetical protein 71.4 12 0.00026 19.0 3.4 49 38-86 4-57 (68)
142 PHA02335 hypothetical protein 71.4 12 0.00025 21.6 3.8 29 74-102 24-52 (118)
143 PF12174 RST: RCD1-SRO-TAF4 (R 70.7 6.8 0.00015 20.8 2.6 49 36-87 6-54 (70)
144 COG4359 Uncharacterized conser 70.5 26 0.00056 22.7 6.0 73 5-85 9-86 (220)
145 KOG1954 Endocytosis/signaling 69.2 12 0.00026 27.0 4.2 57 25-83 446-502 (532)
146 PF08726 EFhand_Ca_insen: Ca2+ 68.7 7.7 0.00017 20.5 2.6 27 23-49 6-32 (69)
147 KOG1265 Phospholipase C [Lipid 68.6 62 0.0013 26.2 9.6 109 5-118 160-299 (1189)
148 PF12995 DUF3879: Domain of un 65.4 31 0.00068 21.7 5.7 56 39-102 2-57 (186)
149 PF08461 HTH_12: Ribonuclease 64.6 19 0.0004 18.7 3.8 41 31-71 6-46 (66)
150 PF02761 Cbl_N2: CBL proto-onc 62.5 25 0.00054 19.5 7.9 54 34-87 18-71 (85)
151 PLN02228 Phosphoinositide phos 60.3 62 0.0013 24.7 6.7 61 54-118 20-92 (567)
152 PF12486 DUF3702: ImpA domain 60.1 38 0.00082 20.8 5.5 37 15-51 61-98 (148)
153 PF09373 PMBR: Pseudomurein-bi 59.6 15 0.00033 16.1 3.0 19 72-90 2-20 (33)
154 PF05099 TerB: Tellurite resis 57.3 24 0.00053 20.8 3.7 81 35-117 36-125 (140)
155 cd06395 PB1_Map2k5 PB1 domain 52.4 18 0.00039 19.8 2.2 45 73-118 21-67 (91)
156 KOG0039 Ferric reductase, NADH 51.6 35 0.00077 26.2 4.4 77 7-85 2-88 (646)
157 PF11527 ARL2_Bind_BART: The A 50.0 51 0.0011 19.3 4.6 75 2-88 36-114 (121)
158 cd07313 terB_like_2 tellurium 49.8 45 0.00097 18.5 3.8 50 36-85 13-64 (104)
159 KOG3449 60S acidic ribosomal p 46.4 59 0.0013 19.0 5.3 43 26-68 4-47 (112)
160 KOG2871 Uncharacterized conser 45.2 22 0.00048 25.5 2.3 61 23-83 309-371 (449)
161 PLN02222 phosphoinositide phos 44.7 1.2E+02 0.0026 23.3 6.1 60 55-118 22-90 (581)
162 TIGR01848 PHA_reg_PhaR polyhyd 43.1 51 0.0011 19.1 3.2 64 1-68 11-79 (107)
163 cd08327 CARD_RAIDD Caspase act 42.9 62 0.0013 18.2 6.3 60 35-99 32-91 (94)
164 PF07492 Trehalase_Ca-bi: Neut 41.6 25 0.00054 15.3 1.4 18 91-108 2-19 (30)
165 PF07308 DUF1456: Protein of u 41.2 56 0.0012 17.2 4.9 25 42-66 17-41 (68)
166 PF10437 Lip_prot_lig_C: Bacte 41.0 60 0.0013 17.5 4.6 43 40-84 43-86 (86)
167 TIGR01639 P_fal_TIGR01639 Plas 40.8 52 0.0011 16.8 3.4 32 36-67 7-38 (61)
168 PTZ00373 60S Acidic ribosomal 39.6 79 0.0017 18.5 5.7 51 27-82 7-58 (112)
169 PF04876 Tenui_NCP: Tenuivirus 39.4 94 0.002 19.3 7.1 14 75-88 149-162 (175)
170 PRK00523 hypothetical protein; 39.3 63 0.0014 17.3 4.9 43 25-67 26-68 (72)
171 PF11593 Med3: Mediator comple 38.5 96 0.0021 22.2 4.6 11 74-84 42-52 (379)
172 PHA02986 hypothetical protein; 37.7 91 0.002 18.6 4.7 53 8-68 25-77 (141)
173 cd06402 PB1_p62 The PB1 domain 37.5 13 0.00029 20.6 0.3 56 64-119 16-74 (87)
174 KOG4301 Beta-dystrobrevin [Cyt 36.8 77 0.0017 22.6 3.9 60 26-86 113-173 (434)
175 KOG4286 Dystrophin-like protei 36.7 1.9E+02 0.0041 23.2 6.1 79 23-101 420-519 (966)
176 cd06403 PB1_Par6 The PB1 domai 36.2 13 0.00027 20.3 0.1 53 64-117 11-66 (80)
177 PF03672 UPF0154: Uncharacteri 35.1 72 0.0016 16.7 5.0 42 26-67 19-60 (64)
178 KOG0998 Synaptic vesicle prote 35.0 53 0.0012 26.3 3.3 62 24-87 130-191 (847)
179 COG3763 Uncharacterized protei 34.6 77 0.0017 16.9 5.1 42 26-67 26-67 (71)
180 PF04842 DUF639: Plant protein 33.7 1.4E+02 0.003 23.4 5.0 59 41-99 137-195 (683)
181 PF10891 DUF2719: Protein of u 33.4 74 0.0016 17.3 2.7 16 7-22 33-48 (81)
182 KOG1264 Phospholipase C [Lipid 33.2 1.6E+02 0.0035 24.0 5.3 82 5-86 192-293 (1267)
183 PF03979 Sigma70_r1_1: Sigma-7 32.5 87 0.0019 16.9 3.2 34 35-70 18-51 (82)
184 PRK01844 hypothetical protein; 32.3 87 0.0019 16.8 4.9 43 25-67 25-67 (72)
185 cd05833 Ribosomal_P2 Ribosomal 32.0 1.1E+02 0.0023 17.8 5.7 51 27-82 5-56 (109)
186 KOG4403 Cell surface glycoprot 31.8 56 0.0012 24.0 2.7 29 57-85 67-95 (575)
187 PF07879 PHB_acc_N: PHB/PHA ac 31.7 84 0.0018 16.4 3.5 20 31-50 11-31 (64)
188 TIGR03573 WbuX N-acetyl sugar 30.5 2E+02 0.0042 20.3 5.2 8 75-82 303-310 (343)
189 PF12419 DUF3670: SNF2 Helicas 30.3 1.3E+02 0.0028 18.1 5.1 49 35-83 80-138 (141)
190 COG2818 Tag 3-methyladenine DN 30.3 1.1E+02 0.0025 19.6 3.6 36 19-54 51-87 (188)
191 cd08332 CARD_CASP2 Caspase act 30.2 54 0.0012 18.2 2.0 47 35-86 31-77 (90)
192 PF11020 DUF2610: Domain of un 29.0 1.1E+02 0.0023 16.8 3.7 50 36-85 26-76 (82)
193 smart00513 SAP Putative DNA-bi 28.9 63 0.0014 14.1 2.4 17 38-54 3-19 (35)
194 KOG4286 Dystrophin-like protei 28.8 1.6E+02 0.0035 23.5 4.7 61 24-85 471-532 (966)
195 PF02037 SAP: SAP domain; Int 28.3 64 0.0014 14.3 1.8 17 38-54 3-19 (35)
196 PF09068 EF-hand_2: EF hand; 27.8 1.4E+02 0.003 17.8 9.2 29 23-51 41-72 (127)
197 PF10897 DUF2713: Protein of u 27.4 1.8E+02 0.004 19.0 4.3 38 72-109 175-230 (246)
198 KOG0039 Ferric reductase, NADH 27.2 3E+02 0.0066 21.4 6.8 71 36-113 2-86 (646)
199 KOG2871 Uncharacterized conser 26.8 77 0.0017 22.9 2.6 30 88-117 309-338 (449)
200 PF07862 Nif11: Nitrogen fixat 26.7 85 0.0018 14.9 2.5 21 40-60 28-48 (49)
201 PF09336 Vps4_C: Vps4 C termin 26.7 1E+02 0.0022 15.8 3.0 25 38-62 29-53 (62)
202 PF15326 TEX15: Testis express 26.5 2E+02 0.0044 19.1 4.6 62 56-117 76-137 (233)
203 cd08326 CARD_CASP9 Caspase act 26.1 99 0.0021 16.9 2.6 47 35-86 27-73 (84)
204 PF08355 EF_assoc_1: EF hand a 25.8 67 0.0014 17.3 1.8 18 4-21 13-30 (76)
205 PF07303 Occludin_ELL: Occludi 25.8 1.4E+02 0.003 17.0 3.2 23 11-33 20-42 (101)
206 PLN00138 large subunit ribosom 25.1 1.5E+02 0.0033 17.3 5.6 41 28-68 6-47 (113)
207 PF01885 PTS_2-RNA: RNA 2'-pho 24.8 2E+02 0.0042 18.4 4.2 35 34-68 28-62 (186)
208 KOG2419 Phosphatidylserine dec 24.1 55 0.0012 25.5 1.6 15 72-86 519-533 (975)
209 PF06384 ICAT: Beta-catenin-in 23.6 1.4E+02 0.003 16.3 2.7 19 43-61 21-39 (78)
210 KOG2525 Folylpolyglutamate syn 23.5 1E+02 0.0022 23.0 2.9 46 9-54 18-66 (496)
211 PRK10353 3-methyl-adenine DNA 23.4 1.3E+02 0.0027 19.4 3.0 45 18-62 49-94 (187)
212 TIGR00624 tag DNA-3-methyladen 23.3 1.7E+02 0.0038 18.6 3.6 47 18-64 48-95 (179)
213 PF02375 JmjN: jmjN domain; I 23.1 89 0.0019 13.9 1.7 17 11-27 6-22 (34)
214 PF11848 DUF3368: Domain of un 22.5 1.1E+02 0.0023 14.6 3.6 33 35-67 14-47 (48)
215 PRK03968 DNA primase large sub 22.3 3.1E+02 0.0068 19.9 4.9 42 37-84 120-161 (399)
216 KOG0035 Ca2+-binding actin-bun 22.2 2E+02 0.0044 23.4 4.3 50 58-107 747-807 (890)
217 PF08671 SinI: Anti-repressor 22.1 90 0.0019 13.5 1.7 13 37-49 15-27 (30)
218 PRK00819 RNA 2'-phosphotransfe 21.9 2.3E+02 0.0049 18.1 4.3 34 34-67 29-62 (179)
219 COG5562 Phage envelope protein 21.7 86 0.0019 19.0 1.9 20 34-53 84-103 (137)
220 PF03352 Adenine_glyco: Methyl 21.4 1.2E+02 0.0026 19.3 2.6 45 20-64 46-91 (179)
221 PF12631 GTPase_Cys_C: Catalyt 20.7 1.5E+02 0.0032 15.5 5.3 54 14-67 14-72 (73)
222 cd04411 Ribosomal_P1_P2_L12p R 20.6 1.9E+02 0.0041 16.7 5.9 47 31-83 10-56 (105)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.95 E-value=5.4e-27 Score=146.31 Aligned_cols=119 Identities=30% Similarity=0.584 Sum_probs=115.0
Q ss_pred CcccCCCCceeHHHHHHHHHHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHH
Q 033370 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDD 79 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~e 79 (121)
|||.+.+|+|++.||..+|+.++.|+.+|+.+| +++|.|+..||+++|..+|+.++++..+.+++++|..++|.|.|++
T Consensus 102 mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~ 181 (221)
T KOG0037|consen 102 MFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDD 181 (221)
T ss_pred HhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHH
Confidence 589999999999999999999999999999999 7999999999999999999999999999999999977799999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 80 FISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 80 F~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
|+.++..+..+.++|.++|++..|.|++++++|+.+++++
T Consensus 182 FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~~~ 221 (221)
T KOG0037|consen 182 FIQCCVVLQRLTEAFRRRDTAQQGSITISYDDFLQMTMSI 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeEEEeHHHHHHHhhcC
Confidence 9999999999999999999999999999999999998864
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.69 E-value=8.1e-16 Score=93.52 Aligned_cols=97 Identities=16% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------HHHHH
Q 033370 21 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-------QSARN 92 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------~~~~~ 92 (121)
.++.|+++|..+| +++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|++|+.+|... +++..
T Consensus 18 qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~ 96 (160)
T COG5126 18 QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELRE 96 (160)
T ss_pred HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHH
Confidence 4578888999999 588999999999999988888888889999999887 78889999998888543 56888
Q ss_pred HhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 93 LFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 93 ~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
+|+.||+|++|+|++.+...+...+|
T Consensus 97 aF~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 97 AFKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred HHHHhCCCCCceecHHHHHHHHHhhc
Confidence 89999999999886666444444444
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-15 Score=93.46 Aligned_cols=97 Identities=18% Similarity=0.363 Sum_probs=81.8
Q ss_pred HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-----------HH
Q 033370 22 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-----------QS 89 (121)
Q Consensus 22 ~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-----------~~ 89 (121)
...++.+|..+| +++|.|+..|+..+++.+|..++..++..++..+|.+++|.|++++|+.++... ..
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 467889999999 689999999999999999999999999999999999999999999999988644 26
Q ss_pred HHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 90 ARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
++++|+.||++++|+|+..+...+...+|
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 89999999999999996666555444443
No 4
>PTZ00183 centrin; Provisional
Probab=99.65 E-value=1.3e-14 Score=88.88 Aligned_cols=115 Identities=18% Similarity=0.327 Sum_probs=96.3
Q ss_pred cccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCC
Q 033370 2 YDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNG 73 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~ 73 (121)
+|++++|.|+++||..++..+ ..+..+|..+| +++|.|++.||..++... ......+.++.+|+.+|.+++|
T Consensus 26 ~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G 105 (158)
T PTZ00183 26 FDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTG 105 (158)
T ss_pred hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCC
Confidence 688999999999999888753 46889999999 689999999999887653 3445567889999999999999
Q ss_pred cccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 74 RLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 74 ~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.|+.+||..++... ..+..+|..+|.+++|.| +..+|..++.+
T Consensus 106 ~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~ 154 (158)
T PTZ00183 106 KISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEI--SEEEFYRIMKK 154 (158)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHhc
Confidence 99999999988653 458889999999999987 88888877654
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=88.11 Aligned_cols=116 Identities=15% Similarity=0.293 Sum_probs=89.4
Q ss_pred CcccCCCCceeHHHHHHHHHHH------HHHHHHhhHhhCCCCeecHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCC
Q 033370 1 MYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLERGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCESFDQNKNG 73 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~ 73 (121)
++|++++|.|+..++..+++.+ ..+..++..+|.+.+.|++.+|..++...- ..-+.+++..+|+.+|.+++|
T Consensus 28 l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG 107 (160)
T COG5126 28 LFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDG 107 (160)
T ss_pred HhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCc
Confidence 4688888888888888888754 567777877777778888888888877643 445577788888888888888
Q ss_pred cccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 74 RLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 74 ~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.|+..+...+++.+ +.+..+++.+|++++|.| ++.+|....+.
T Consensus 108 ~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i--~~~eF~~~~~~ 156 (160)
T COG5126 108 YISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEI--DYEEFKKLIKD 156 (160)
T ss_pred eecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceE--eHHHHHHHHhc
Confidence 88888888888655 557888888888888877 77777766554
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.61 E-value=4.2e-14 Score=86.40 Aligned_cols=116 Identities=16% Similarity=0.380 Sum_probs=95.1
Q ss_pred CcccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCC-----CHHHHHHHHHHhC
Q 033370 1 MYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL-----DSPAFYTVCESFD 68 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~-----~~~~~~~~~~~~d 68 (121)
++|.+++|.|+-.|+..+++.+ ..+..++..+| +++|.|++.+|..++....... ..+++...|+.+|
T Consensus 16 ~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD 95 (151)
T KOG0027|consen 16 LFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFD 95 (151)
T ss_pred HHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHc
Confidence 4788899999999998888764 67888899999 6899999999999888765432 3458889999999
Q ss_pred CCCCCcccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 69 QNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 69 ~~~~~~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.+++|.|+..|+..++..+ ..+...++..|.+++|.| ++.+|+.+..+
T Consensus 96 ~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i--~f~ef~~~m~~ 149 (151)
T KOG0027|consen 96 KDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV--NFEEFVKMMSG 149 (151)
T ss_pred cCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE--eHHHHHHHHhc
Confidence 9999999999999998776 457888888899999988 66888877654
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.60 E-value=5.9e-14 Score=84.98 Aligned_cols=115 Identities=16% Similarity=0.287 Sum_probs=90.5
Q ss_pred cccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCC
Q 033370 2 YDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCESFDQNKNG 73 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~ 73 (121)
+|.+++|.|+++||..++..+ +.+..+|..+| +++|.|++++|..++.... .......+..+|+.+|.+++|
T Consensus 20 ~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g 99 (149)
T PTZ00184 20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNG 99 (149)
T ss_pred HcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCC
Confidence 688899999999998877643 46788899999 6889999999988887542 233445678889999999999
Q ss_pred cccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 74 RLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 74 ~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.|+.++|..++... ..+..+|..+|.+++|.| +..+|+.++..
T Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~ 148 (149)
T PTZ00184 100 FISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI--NYEEFVKMMMS 148 (149)
T ss_pred eEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcC--cHHHHHHHHhc
Confidence 99999998887543 457788888998888877 78888876653
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-14 Score=90.80 Aligned_cols=99 Identities=16% Similarity=0.326 Sum_probs=87.6
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCCC
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTA 100 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~~ 100 (121)
..+...|...| +++|.|+-+|++++|...+ .+.+.+.|..|+..+|.+.+|+|++.||..+|..++.|+.+|+.||.|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45678899999 6999999999999998655 568899999999999999999999999999999999999999999999
Q ss_pred CCceEeeehhhhHHHhhcccC
Q 033370 101 KQGRITLDLNQFIFCTANCRI 121 (121)
Q Consensus 101 ~~g~i~~~~~~~~~~~~~~~~ 121 (121)
++|.|+.++.+=....+|+++
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~L 157 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRL 157 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCC
Confidence 999998877666666666553
No 9
>PTZ00183 centrin; Provisional
Probab=99.54 E-value=2.7e-13 Score=82.99 Aligned_cols=95 Identities=19% Similarity=0.399 Sum_probs=82.1
Q ss_pred HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------HHHHH
Q 033370 21 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-------QSARN 92 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------~~~~~ 92 (121)
..+++..+|..+| +++|.|+..||..++..+|...+...+..++..+|.+++|.|++++|+..+... ..+..
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3467899999999 699999999999999999988888899999999999999999999999887653 35889
Q ss_pred HhhhhCCCCCceEeeehhhhHHHhh
Q 033370 93 LFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 93 ~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
+|+.+|.+++|.| +..+|...+.
T Consensus 95 ~F~~~D~~~~G~i--~~~e~~~~l~ 117 (158)
T PTZ00183 95 AFRLFDDDKTGKI--SLKNLKRVAK 117 (158)
T ss_pred HHHHhCCCCCCcC--cHHHHHHHHH
Confidence 9999999999998 5556655443
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.53 E-value=5.4e-13 Score=80.76 Aligned_cols=93 Identities=17% Similarity=0.343 Sum_probs=80.3
Q ss_pred HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------HHHHH
Q 033370 21 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-------QSARN 92 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------~~~~~ 92 (121)
..+.++..|..+| +++|.|+.+||..++..++.++..+.+..+++.++.+++|.|++++|+.++... ..+..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 3467889999999 699999999999999998888888899999999999999999999999887643 45889
Q ss_pred HhhhhCCCCCceEeeehhhhHHH
Q 033370 93 LFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 93 ~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
+|+.+|.+++|.| +..++...
T Consensus 89 ~F~~~D~~~~g~i--~~~e~~~~ 109 (149)
T PTZ00184 89 AFKVFDRDGNGFI--SAAELRHV 109 (149)
T ss_pred HHHhhCCCCCCeE--eHHHHHHH
Confidence 9999999999998 55555433
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=7.6e-13 Score=83.06 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=86.5
Q ss_pred cCCCCceeHHHHHHHHHHH-------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcc
Q 033370 4 FDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRL 75 (121)
Q Consensus 4 ~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l 75 (121)
..++|.++-++|..++... ..+..+|+.+| +++|.|++.||..++.........+.+...|+.||.+++|.|
T Consensus 38 ~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 38 ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE
Confidence 3467888888888888753 45788888888 688999999988888777666666677778888999999999
Q ss_pred cHHHHHHHHHHH-----------------HHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 76 RLDDFISLCIFL-----------------QSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 76 ~~~eF~~~~~~~-----------------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
+++|++..+... .....+|+++|.+++|.+ |.++|+....
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~l--T~eef~~~~~ 174 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKL--TLEEFIEGCK 174 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcc--cHHHHHHHhh
Confidence 999888777433 336788888999988988 6666766543
No 12
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1e-12 Score=78.99 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=85.1
Q ss_pred CcccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCC
Q 033370 1 MYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVCESFDQNKN 72 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~ 72 (121)
+||++++|.|++.|+....+++ .++.++..-+| .++|.|++++|...+.. ++..-+.+++..+|+.+|.+.+
T Consensus 41 lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~ 120 (172)
T KOG0028|consen 41 LFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKT 120 (172)
T ss_pred hhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCC
Confidence 4678888888888886555433 66677777777 47888888888777554 4444477788888888888888
Q ss_pred CcccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 73 GRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 73 ~~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
|.|++.+|..++..+ ..+.+....+|.+++|-| ++++|+.+..
T Consensus 121 Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgev--neeEF~~imk 169 (172)
T KOG0028|consen 121 GKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEV--NEEEFIRIMK 169 (172)
T ss_pred CCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccc--cHHHHHHHHh
Confidence 888888888888776 346677777888888876 7777876643
No 13
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1e-11 Score=74.76 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=51.3
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------HHHHHHh
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-------QSARNLF 94 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------~~~~~~f 94 (121)
++++.+|..+| +++|.|+.+||+-+++.+|+.+...++..++..+|.++.|.|+|++|+..+... ..+..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566666666 466666666666666666666666666666666666666666666666665332 3456666
Q ss_pred hhhCCCCCceEe
Q 033370 95 NSFDTAKQGRIT 106 (121)
Q Consensus 95 ~~~d~~~~g~i~ 106 (121)
+.+|.|++|.|+
T Consensus 113 rl~D~D~~Gkis 124 (172)
T KOG0028|consen 113 RLFDDDKTGKIS 124 (172)
T ss_pred HcccccCCCCcC
Confidence 666666666663
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=3.6e-12 Score=71.03 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhHhhC--CCCeecHHHHHHHHHH-cCCCCCH-HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLER--GRGYLVPDNVYEALVK-IGFSLDS-PAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 20 ~~~~~~~~~f~~~D~--~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
..+..+..+|+.||+ ++|.|+..||+.++.. +|..++. .+++.+++.+|.+++|.|+|+||+.++..+..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 356788999999996 7899999999999999 8876777 89999999999999999999999999987643
No 15
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.42 E-value=3.5e-12 Score=75.08 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=88.2
Q ss_pred HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHHH---------H
Q 033370 22 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQN--KNGRLRLDDFISLCIFLQ---------S 89 (121)
Q Consensus 22 ~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~l~~~eF~~~~~~~~---------~ 89 (121)
+.+++.+|..|| .++|+|+..+...+|+.+|.+++..++.+....+..+ +-.+|+|++|+-++..+. .
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 478899999999 6999999999999999999999999999998888766 447899999999998773 3
Q ss_pred HHHHhhhhCCCCCceEeeehhhhHHHhhcccC
Q 033370 90 ARNLFNSFDTAKQGRITLDLNQFIFCTANCRI 121 (121)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~~ 121 (121)
.-+.++.||++++|.|...+...+..++|.++
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGekl 121 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL 121 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhhc
Confidence 66788899999999999999999999888653
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=2e-12 Score=68.34 Aligned_cols=61 Identities=23% Similarity=0.619 Sum_probs=52.7
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHH----HHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPA----FYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
+++.+|+.+| +++|.|+.+|+..++..++...+... ++.+++.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999 79999999999999999987665544 4555999999999999999999874
No 17
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=3.1e-12 Score=80.33 Aligned_cols=96 Identities=25% Similarity=0.443 Sum_probs=79.0
Q ss_pred cccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHc----CC-------CCCHHHHHHH
Q 033370 2 YDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI----GF-------SLDSPAFYTV 63 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~ 63 (121)
+|.|++|.|+|.||+..+..+ +++..+|+.|| +++|.|+..|+-..+... +. ....+.+..+
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKI 152 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHH
Confidence 789999999999999887754 56778899999 799999999988777763 21 1235668999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhh
Q 033370 64 CESFDQNKNGRLRLDDFISLCIFLQSARNLFNSF 97 (121)
Q Consensus 64 ~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~ 97 (121)
|+.+|.|++|.|+++||...+...+.+-..+...
T Consensus 153 f~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~ 186 (193)
T KOG0044|consen 153 FSKMDKNKDGKLTLEEFIEGCKADPSILRALEQD 186 (193)
T ss_pred HHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhc
Confidence 9999999999999999999998877766665443
No 18
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.35 E-value=9.5e-12 Score=78.01 Aligned_cols=112 Identities=14% Similarity=0.270 Sum_probs=69.7
Q ss_pred ccC-CCCceeHHHHHHHHHHH--HHHHHHhhHhh-CCCCe-ecHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCccc
Q 033370 3 DFD-RNGTMSFEEFVELNKFL--LKVQHAFSDLE-RGRGY-LVPDNVYEALVKIGFSLDSP-AFYTVCESFDQNKNGRLR 76 (121)
Q Consensus 3 d~~-~~g~i~~~ef~~~~~~~--~~~~~~f~~~D-~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~l~ 76 (121)
|.+ +.|.++.+||..+.... .....++..++ .++|. |++++|-..+.....+...+ .++-+|+.||.+++|.|+
T Consensus 43 ~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~ 122 (187)
T KOG0034|consen 43 DRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFIS 122 (187)
T ss_pred ccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCc
Confidence 444 66777777777766522 34566666777 45544 77777777776654443333 667777777777777777
Q ss_pred HHHHHHHHHHH-------------HHHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 77 LDDFISLCIFL-------------QSARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 77 ~~eF~~~~~~~-------------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
.+|+...+..+ ..+..+|..+|.|++|.| ++++|-...
T Consensus 123 reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I--sfeEf~~~v 173 (187)
T KOG0034|consen 123 REELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI--SFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC--cHHHHHHHH
Confidence 77776666432 224566777777777777 555565544
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.34 E-value=6.3e-11 Score=66.03 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhHhh-C-CCC-eecHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88 (121)
Q Consensus 20 ~~~~~~~~~f~~~D-~-~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~ 88 (121)
..+..+..+|+.|| + ++| .|+..||+.+++. +|...+++.++.+++.+|.+++|+|+|++|+.++..+.
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45678899999998 4 789 6999999999999 88888999999999999999999999999999987654
No 20
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-10 Score=72.51 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=72.4
Q ss_pred cccCCCCc-eeHHHHHHHHHHH-------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCC-CCC------HHHHHHHHH
Q 033370 2 YDFDRNGT-MSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF-SLD------SPAFYTVCE 65 (121)
Q Consensus 2 ~d~~~~g~-i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~-~~~------~~~~~~~~~ 65 (121)
++.+++|. |+|++|.+.+... ++++-+|+.|| +++|.|+.+|+.+++..+-. ..+ .+.++.++.
T Consensus 75 f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~ 154 (187)
T KOG0034|consen 75 FDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFE 154 (187)
T ss_pred HhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 56667777 9999999987642 48899999999 79999999999999998632 222 234678889
Q ss_pred HhCCCCCCcccHHHHHHHHHHHHHH
Q 033370 66 SFDQNKNGRLRLDDFISLCIFLQSA 90 (121)
Q Consensus 66 ~~d~~~~~~l~~~eF~~~~~~~~~~ 90 (121)
.+|.+++|+|+++||...+.+.+.+
T Consensus 155 e~D~d~DG~IsfeEf~~~v~~~P~~ 179 (187)
T KOG0034|consen 155 EADTDGDGKISFEEFCKVVEKQPDL 179 (187)
T ss_pred HhCCCCCCcCcHHHHHHHHHcCccH
Confidence 9999999999999999998776443
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.32 E-value=8.8e-11 Score=65.42 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhHhh-C-C-CCeecHHHHHHHHHH---cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 19 NKFLLKVQHAFSDLE-R-G-RGYLVPDNVYEALVK---IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 19 ~~~~~~~~~~f~~~D-~-~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
-+.+..+-.+|..|| + + +|.|+..||+.++.. +|..++.+++..+++..|.+++|+|+|+||+.++..+..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 345677889999999 4 5 789999999999973 688889999999999999999999999999999887644
No 22
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.28 E-value=3.7e-11 Score=82.03 Aligned_cols=86 Identities=17% Similarity=0.402 Sum_probs=80.1
Q ss_pred CcccCCCCceeHHHHHHHHH-HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHH
Q 033370 1 MYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLD 78 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~-~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 78 (121)
.+|.|.+|.+||+||.+.+. +-.++..+|+..| +.+|.|..+|+.+.|+.+|.+++.+.++.+++..|.++++.|+++
T Consensus 59 ~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~ 138 (463)
T KOG0036|consen 59 AMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLE 138 (463)
T ss_pred hcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccH
Confidence 37899999999999999888 5578899999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 033370 79 DFISLCIF 86 (121)
Q Consensus 79 eF~~~~~~ 86 (121)
|+..++..
T Consensus 139 e~rd~~ll 146 (463)
T KOG0036|consen 139 EWRDHLLL 146 (463)
T ss_pred HHHhhhhc
Confidence 99988754
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.26 E-value=6.3e-11 Score=60.12 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=48.7
Q ss_pred CCCeecHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 35 GRGYLVPDNVYEALVKIGFS-LDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
.+|.|+.++|+.++..+|.. +++.++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36999999999999888988 99999999999999999999999999999865
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=4.1e-10 Score=63.42 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhHhh-C-CCC-eecHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 19 NKFLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVKI-----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 19 ~~~~~~~~~~f~~~D-~-~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
-+.+..+..+|..|| . ++| .|+..||+.++... +...++..++.+++.+|.+++|.|+|+||+.++..+..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 346678899999999 5 777 69999999999772 33447788999999999999999999999999988754
No 25
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.22 E-value=6.5e-10 Score=62.49 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=60.3
Q ss_pred HHHHHHHHhhHhh-C-CCC-eecHHHHHHHHHH-cC----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Q 033370 21 FLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVK-IG----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSAR 91 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~-~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~ 91 (121)
..+.++.+|..+| . ++| .|+..|++.+++. +| ..++...++.+++.+|.+++|.|+|++|+.++..+....
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~ 85 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVAC 85 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4577899999996 5 899 5999999999985 44 346788999999999999999999999999988775543
No 26
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.21 E-value=6.6e-10 Score=66.70 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=84.7
Q ss_pred eHHHHHHHHH-HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-
Q 033370 11 SFEEFVELNK-FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL- 87 (121)
Q Consensus 11 ~~~ef~~~~~-~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~- 87 (121)
+-..|.-+-. .+++++++|..+| +++|.|..++++..+.++|...+.+++..|++... |-|+|--|+.+....
T Consensus 19 sSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~----gPINft~FLTmfGekL 94 (171)
T KOG0031|consen 19 SSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP----GPINFTVFLTMFGEKL 94 (171)
T ss_pred cchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHHh
Confidence 3344555554 6789999999999 68999999999999999999999999999998875 579999999988432
Q ss_pred ------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 88 ------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 88 ------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
..+..+|+.||.+++|.|..+...-+..++|
T Consensus 95 ~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 95 NGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred cCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 5588999999999999996666444444443
No 27
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.21 E-value=3.6e-10 Score=67.78 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCCCceeHHHHHHHHH-HH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCccc
Q 033370 5 DRNGTMSFEEFVELNK-FL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLR 76 (121)
Q Consensus 5 ~~~g~i~~~ef~~~~~-~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 76 (121)
+.+|.|+|.-|+.+++ .+ +.+..+|+-|| .++|.|+...++.+|...|.++++++++.+++.+..+..|.++
T Consensus 76 Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 76 EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCcee
Confidence 3456777777777666 33 56899999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 033370 77 LDDFISLCIF 86 (121)
Q Consensus 77 ~~eF~~~~~~ 86 (121)
|..|+..+.+
T Consensus 156 y~~~~~~ith 165 (171)
T KOG0031|consen 156 YKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHc
Confidence 9999988763
No 28
>PLN02964 phosphatidylserine decarboxylase
Probab=99.21 E-value=2.2e-10 Score=83.26 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=76.1
Q ss_pred HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcC-CCCCHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHH------HH
Q 033370 21 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPA---FYTVCESFDQNKNGRLRLDDFISLCIFL------QS 89 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~l~~~eF~~~~~~~------~~ 89 (121)
.+++++.+|..+| +++|.+ +..+++.+| ..++..+ ++.+++.+|.+++|.|+++||+.++..+ ..
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 4578899999999 689986 888999999 4666665 7999999999999999999999999764 45
Q ss_pred HHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 90 ARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 90 ~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
+..+|+.+|+|++|.| +.+++..++.
T Consensus 217 L~eaFk~fDkDgdG~I--s~dEL~~vL~ 242 (644)
T PLN02964 217 KEELFKAADLNGDGVV--TIDELAALLA 242 (644)
T ss_pred HHHHHHHhCCCCCCcC--CHHHHHHHHH
Confidence 8999999999999998 5555655443
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=2.9e-10 Score=64.41 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=62.0
Q ss_pred HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Q 033370 21 FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARN 92 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~ 92 (121)
.+..++.+|..+| +++|.|+..+++.+++..+ ++.++++.++..++.+++|.|+++||+.++..+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 4567899999999 6999999999999999865 57788999999999999999999999999988766554
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.19 E-value=1.1e-09 Score=61.82 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=59.3
Q ss_pred HHHHHHHHhhHhhC--C-CCeecHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 21 FLLKVQHAFSDLER--G-RGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 21 ~~~~~~~~f~~~D~--~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
....++.+|..+|. + +|.|+..|++.+++. ++..++...++.+++.+|.+++|.|+|++|+.++.....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 45678999999983 4 599999999999986 456778899999999999999999999999999876543
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.18 E-value=1.1e-09 Score=61.19 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhHhh-C-CCC-eecHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLE-R-GRG-YLVPDNVYEALVKI-----GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 20 ~~~~~~~~~f~~~D-~-~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
+.+..+..+|..|. . +++ .|+..||+.++... +...++.+++.+++.+|.+++|.|+|+||+.++..+..
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 46678899999954 4 654 99999999999885 33556788999999999999999999999999887643
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.17 E-value=3.6e-10 Score=59.63 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=54.0
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+.+|..+| +++|.|+.+|++.+++..+. +.+.++.+++.++.+++|.|+++||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999 68999999999999998764 77889999999999999999999999988654
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.1e-09 Score=75.03 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=71.3
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-HHHHHHhhhhCC
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS-LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL-QSARNLFNSFDT 99 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-~~~~~~f~~~d~ 99 (121)
..++.+|+.+| +++|.++..++...+..+..+ .+.+....+++.+|.+.+|+++|+||...+... .++..+|+..|.
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~ 93 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDL 93 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhcc
Confidence 45788899999 689999999999999888776 667778899999999999999999999888543 446777777777
Q ss_pred CCCceEeeeh
Q 033370 100 AKQGRITLDL 109 (121)
Q Consensus 100 ~~~g~i~~~~ 109 (121)
+.+|.|.+.+
T Consensus 94 ~hdG~i~~~E 103 (463)
T KOG0036|consen 94 EHDGKIDPNE 103 (463)
T ss_pred ccCCccCHHH
Confidence 7777776655
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=1.9e-09 Score=60.04 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=58.9
Q ss_pred HHHHHHHHhhHhhC---CCCeecHHHHHHHHHH-cCCC----CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 21 FLLKVQHAFSDLER---GRGYLVPDNVYEALVK-IGFS----LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 21 ~~~~~~~~f~~~D~---~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
.++.++.+|..+|. ++|.|+..++..+++. +|.. ++.+.+..++..++.+++|.|+|++|+.++....+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 56778999999996 7899999999999976 4533 45888999999999999999999999999876643
No 35
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=1.3e-09 Score=55.93 Aligned_cols=60 Identities=22% Similarity=0.488 Sum_probs=55.1
Q ss_pred HHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 25 VQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 25 ~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
+..+|..+| +++|.|+.+++..+++.++.+.+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999 689999999999999999999999999999999999999999999998764
No 36
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.7e-10 Score=73.84 Aligned_cols=112 Identities=21% Similarity=0.362 Sum_probs=86.5
Q ss_pred cccCCCCceeHHHHHHHHHH--------------------HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCC-CCHHH
Q 033370 2 YDFDRNGTMSFEEFVELNKF--------------------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS-LDSPA 59 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~--------------------~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~-~~~~~ 59 (121)
+|.+.+|.|+|+++...+-. +...+..|+..| +++|.++.+||..+|...-.+ +..=.
T Consensus 122 ~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iV 201 (325)
T KOG4223|consen 122 YDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIV 201 (325)
T ss_pred hccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHH
Confidence 57889999999998764331 245688899999 799999999999999765443 44556
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHH-----------HHHHHhhhhCCCCCceEeeeh-hhhH
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCIFLQ-----------SARNLFNSFDTAKQGRITLDL-NQFI 113 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~~~~-----------~~~~~f~~~d~~~~g~i~~~~-~~~~ 113 (121)
+...+...|.|++|.|+++||+.-|.... .-...+..+|++++|++.-.+ .+|+
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI 267 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI 267 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc
Confidence 78899999999999999999998775431 234666778999999985544 4444
No 37
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.00 E-value=3.2e-09 Score=63.37 Aligned_cols=93 Identities=22% Similarity=0.404 Sum_probs=74.7
Q ss_pred cccCCCCceeHHHHHHHHHHH-------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCC-CCCHHH----HHHHHHHhC
Q 033370 2 YDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPA----FYTVCESFD 68 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~-~~~~~~----~~~~~~~~d 68 (121)
|..+|.|.++|++|+..+.-. -++.-+|+.|| ++++.|-..++...+..+.. .+++++ ++++++..|
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEAD 159 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhc
Confidence 567899999999999987733 24667799999 89999999999999999864 466665 456677889
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHh
Q 033370 69 QNKNGRLRLDDFISLCIFLQSARNLF 94 (121)
Q Consensus 69 ~~~~~~l~~~eF~~~~~~~~~~~~~f 94 (121)
.+++|++++.||-.++.+-...-..|
T Consensus 160 ~DgDgkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 160 LDGDGKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred CCCCCcccHHHHHHHHHhCcchHhhh
Confidence 99999999999999887655444333
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=98.98 E-value=4.8e-09 Score=54.67 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=55.0
Q ss_pred HHhhHhh-CCCCeecHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCC-CcccHHHHHHHHHH
Q 033370 27 HAFSDLE-RGRGYLVPDNVYEALVKIGF-SLDSPAFYTVCESFDQNKN-GRLRLDDFISLCIF 86 (121)
Q Consensus 27 ~~f~~~D-~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~l~~~eF~~~~~~ 86 (121)
.+|..|| ++.|.|....+...|+.++. .+.+..++.+...+|+++. |.|+++.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4689999 69999999999999999987 7888899999999999988 99999999998764
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.98 E-value=2.5e-08 Score=55.48 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhHhhCCCCeecHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLERGRGYLVPDNVYEALVK-----IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSA 90 (121)
Q Consensus 20 ~~~~~~~~~f~~~D~~~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~ 90 (121)
..+..+...|..|.++.+.++..||+.++.. ++...++..++.+++..|.++||.|+|.||+.++..+...
T Consensus 5 ~ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 5 HSMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3566778899999866789999999999976 2445678899999999999999999999999999887554
No 40
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.94 E-value=1.1e-08 Score=60.54 Aligned_cols=77 Identities=16% Similarity=0.350 Sum_probs=67.4
Q ss_pred CceeHHHHHHHHHHH---------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccH
Q 033370 8 GTMSFEEFVELNKFL---------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRL 77 (121)
Q Consensus 8 g~i~~~ef~~~~~~~---------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 77 (121)
..|+|++|.-++..+ +..-+..+.|| .++|.|+..|++++|..+|..++.++++.++.... |++|.|+|
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~Y 142 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINY 142 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcH
Confidence 678888888877765 45677889999 59999999999999999999999999999999986 88899999
Q ss_pred HHHHHHHH
Q 033370 78 DDFISLCI 85 (121)
Q Consensus 78 ~eF~~~~~ 85 (121)
+.|+..+.
T Consensus 143 E~fVk~i~ 150 (152)
T KOG0030|consen 143 EAFVKHIM 150 (152)
T ss_pred HHHHHHHh
Confidence 99998753
No 41
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.94 E-value=1.1e-08 Score=57.05 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhHhh-C--CCCeecHHHHHHHHH-HcCCCCC----HHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLE-R--GRGYLVPDNVYEALV-KIGFSLD----SPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 20 ~~~~~~~~~f~~~D-~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+.+..+...|..|+ + .+|.|+..||+.++. .++..++ .+.++.+++.+|.+++|.|+|++|+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35677888999999 5 368999999999997 4555455 8889999999999999999999999998765
No 42
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=63.68 Aligned_cols=75 Identities=15% Similarity=0.350 Sum_probs=66.2
Q ss_pred HHHHHHHHH-HHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 12 FEEFVELNK-FLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 12 ~~ef~~~~~-~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
|.+|..+-+ .++.+..+|+.|| +.+|.|+..|++..+..+|.+.+.=-++.+++..|.|.+|+|+|.||+-....
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 466765555 5788999999999 78999999999999999999988888999999999999999999999877643
No 43
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.92 E-value=9.6e-09 Score=59.96 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 22 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 22 ~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
...+..+|..+| +++|.|+.+|+..+. .......+..++..+|.+++|.|+++||..++.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 356888999999 789999999999776 2334566788999999999999999999988744
No 44
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.92 E-value=9.9e-09 Score=70.84 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=87.6
Q ss_pred cccCCCCceeHHHHHHHHHHH----HHHHHHhhHhh-CCCCeecHHHHHHHHHHc------CC----------CCCHHHH
Q 033370 2 YDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLE-RGRGYLVPDNVYEALVKI------GF----------SLDSPAF 60 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~----~~~~~~f~~~D-~~~g~i~~~el~~~l~~~------~~----------~~~~~~~ 60 (121)
++-+.+|-|+|.||+-++..+ ...+-+|+.+| +++|-|+.+||.....-. |. ....+..
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 456788999999998877755 45788899999 899999999987766332 11 1112222
Q ss_pred HHHHHH-hCCCCCCcccHHHHHHHHHHHHH--HHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 61 YTVCES-FDQNKNGRLRLDDFISLCIFLQS--ARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 61 ~~~~~~-~d~~~~~~l~~~eF~~~~~~~~~--~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
..+... +..++++++++++|..++..+++ ++.-|..+++..+|.| ++.+|...+++.
T Consensus 288 saL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~I--se~DFA~~lL~~ 347 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAI--SEVDFAELLLAY 347 (489)
T ss_pred hhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCccccccc--CHHHHHHHHHHH
Confidence 333332 57889999999999999988754 7788999999888988 888888777654
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=2e-08 Score=73.31 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=69.6
Q ss_pred CcccCCCCceeHHHHHHHHHH-----H--HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCC
Q 033370 1 MYDFDRNGTMSFEEFVELNKF-----L--LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKN 72 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~-----~--~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 72 (121)
++|++++|.+ ......-+.. . ..+..+|+.+| +++|.|+++||..++..++...+.+++..+|+.+|.+++
T Consensus 151 lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgd 229 (644)
T PLN02964 151 LLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGD 229 (644)
T ss_pred HHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCC
Confidence 4789999987 3333332221 1 13789999999 799999999999999988877788899999999999999
Q ss_pred CcccHHHHHHHHHH
Q 033370 73 GRLRLDDFISLCIF 86 (121)
Q Consensus 73 ~~l~~~eF~~~~~~ 86 (121)
|.|+++|+..++..
T Consensus 230 G~Is~dEL~~vL~~ 243 (644)
T PLN02964 230 GVVTIDELAALLAL 243 (644)
T ss_pred CcCCHHHHHHHHHh
Confidence 99999999998866
No 46
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.84 E-value=2.5e-08 Score=52.48 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHH----------HHHHHHhhhhCCCCCceEeeehhhhHHH
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCIFL----------QSARNLFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~~~----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
++.+|+.+|.+++|.|+.+|+..++..+ ..+..+|+.+|++++|.| +..+|+.+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i--~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRI--SFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSE--EHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCC--cHHHHhcc
Confidence 5689999999999999999999999765 336677999999999988 77777765
No 47
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.5e-07 Score=62.93 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred cccCCCCceeHHHHHHHHHH------HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcC------C--CCCHH------HH
Q 033370 2 YDFDRNGTMSFEEFVELNKF------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIG------F--SLDSP------AF 60 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~------~--~~~~~------~~ 60 (121)
+|.+++|-|+-.|...++.. ...+...|..+| +.+|.|++++......... . ..... .-
T Consensus 86 iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rD 165 (325)
T KOG4223|consen 86 IDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARD 165 (325)
T ss_pred hcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHH
Confidence 68889999999999887763 256778888899 6899999999988886521 0 11110 12
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH-------HHHHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 61 YTVCESFDQNKNGRLRLDDFISLCIF-------LQSARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 61 ~~~~~~~d~~~~~~l~~~eF~~~~~~-------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
+.-|+..|.+++|.++.+||..++.. .-.+.+...-.|++++|.| +.++|+.-+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I--~~eEfigd~ 226 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKI--SLEEFIGDL 226 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCce--eHHHHHhHH
Confidence 46677889999999999999999843 2336778888999999999 777787643
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.83 E-value=4.8e-08 Score=67.56 Aligned_cols=114 Identities=19% Similarity=0.384 Sum_probs=84.6
Q ss_pred CcccCCCCceeHHHHHHHHHHH--HHHHHHhhHhhC-CCCeecHHHHHHHHHHcC-CCCCH-H-HHHHHHHHhCCCCCCc
Q 033370 1 MYDFDRNGTMSFEEFVELNKFL--LKVQHAFSDLER-GRGYLVPDNVYEALVKIG-FSLDS-P-AFYTVCESFDQNKNGR 74 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~--~~~~~~f~~~D~-~~g~i~~~el~~~l~~~~-~~~~~-~-~~~~~~~~~d~~~~~~ 74 (121)
+|.+++++++++++|..++..+ +-++..|..+|. .+|.|+..+|..++.... .+... . .++..-+.++.+ +..
T Consensus 294 FFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~g 372 (489)
T KOG2643|consen 294 FFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKG 372 (489)
T ss_pred hhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCC
Confidence 3668899999999999999966 456777999995 669999999999887654 22211 1 345566667644 455
Q ss_pred ccHHHHHHHHHHHH---------------------------------------HHHHHhhhhCCCCCceEeeehhhhHHH
Q 033370 75 LRLDDFISLCIFLQ---------------------------------------SARNLFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 75 l~~~eF~~~~~~~~---------------------------------------~~~~~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
|+++||..+...+. .+.-+|..||.++||.+ +.+||+.+
T Consensus 373 ISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~L--S~~EFl~V 450 (489)
T KOG2643|consen 373 ISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTL--SHKEFLAV 450 (489)
T ss_pred cCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcc--cHHHHHHH
Confidence 99999987773321 13467888999999987 88889887
Q ss_pred hh
Q 033370 116 TA 117 (121)
Q Consensus 116 ~~ 117 (121)
+-
T Consensus 451 mk 452 (489)
T KOG2643|consen 451 MK 452 (489)
T ss_pred HH
Confidence 64
No 49
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.76 E-value=1.2e-07 Score=65.99 Aligned_cols=62 Identities=18% Similarity=0.352 Sum_probs=47.6
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIG----FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
.+..+|+.+| +++|.|+.+||.+++.-++ .+++.+.+..+.+.+|.++||.|++.||+....
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3677888888 6888888888888877653 346677778888888888888888888876543
No 50
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.72 E-value=1.2e-07 Score=46.87 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.6
Q ss_pred eecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 38 YLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
++++.|++.+|+.+...++...+..+|+.+|.+++|++..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999987654
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.5e-07 Score=41.44 Aligned_cols=26 Identities=15% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
++.+|+.+|.|++|.|+++||+.++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45566666666666666666666554
No 52
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.48 E-value=2.2e-06 Score=60.60 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=81.6
Q ss_pred cccCCCCceeHHHHHHHHHHH----HHHHHHhhHhhC-CCCeecHHHHHHHHHHcCC------CCCHHHHHHHHHHhCCC
Q 033370 2 YDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-GRGYLVPDNVYEALVKIGF------SLDSPAFYTVCESFDQN 70 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~----~~~~~~f~~~D~-~~g~i~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~ 70 (121)
.|..++|-|+|+||+.+-..+ .....+|..+|+ ++|.++.+++......... .++.+.++. .+...
T Consensus 83 aD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~ 159 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDI 159 (694)
T ss_pred hhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhH
Confidence 466788999999999865532 567889999994 8999999999999987542 233443443 33334
Q ss_pred CCCcccHHHHHHHHHHH--HHHHHHhhhhCCCCCceEeeehhhhH
Q 033370 71 KNGRLRLDDFISLCIFL--QSARNLFNSFDTAKQGRITLDLNQFI 113 (121)
Q Consensus 71 ~~~~l~~~eF~~~~~~~--~~~~~~f~~~d~~~~g~i~~~~~~~~ 113 (121)
....++|.+|.+++... ++..+.|...|+.++|.|+.=-.|.+
T Consensus 160 ~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~i 204 (694)
T KOG0751|consen 160 RKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDI 204 (694)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhh
Confidence 55679999999998654 77899999999999999965444433
No 53
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.45 E-value=4.3e-06 Score=47.93 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=54.4
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~ 88 (121)
+....+|...++++|.|+-.+.+.++...+ ++.+.+..+|...|.+++|.++++||+..|.-+.
T Consensus 10 ~~y~~~F~~l~~~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 10 QKYDQIFQSLDPQDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHCTSSSTTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 566788888887789999999999997754 6779999999999999999999999998876553
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.37 E-value=9.3e-07 Score=38.89 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=23.9
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHc
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKI 51 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~ 51 (121)
+++.+|+.+| +++|.|+++||+.+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 3678999999 699999999999998753
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.34 E-value=4.3e-06 Score=65.56 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=70.8
Q ss_pred HHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCC-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHHH------
Q 033370 22 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLD-------SPAFYTVCESFDQNKNGRLRLDDFISLCIFL------ 87 (121)
Q Consensus 22 ~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~------ 87 (121)
+.++..+|+.|| ..+|.++..+|+.+|+.+|+.++ ..+++.++...|++.+|+|+..+|..+|...
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 357899999999 58999999999999999998652 3478999999999999999999999999654
Q ss_pred --HHHHHHhhhhCCCCCceE
Q 033370 88 --QSARNLFNSFDTAKQGRI 105 (121)
Q Consensus 88 --~~~~~~f~~~d~~~~g~i 105 (121)
..+..+|+..+. +..++
T Consensus 2332 s~~eIE~AfraL~a-~~~yv 2350 (2399)
T KOG0040|consen 2332 SSEEIEDAFRALDA-GKPYV 2350 (2399)
T ss_pred chHHHHHHHHHhhc-CCccc
Confidence 457888888887 56665
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.26 E-value=4.8e-06 Score=48.65 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHH--HHHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 56 DSPAFYTVCESFDQNKNGRLRLDDFISLCIF--LQSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 56 ~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~--~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
-...+...|..+|.|++|.|+.+|...+... -..+...|+.+|.+++|.| |..||..+++
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~I--S~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSI--SLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCC--CHHHHHHHHh
Confidence 4466889999999999999999999877522 1447789999999999999 8888887763
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.26 E-value=6.5e-06 Score=45.68 Aligned_cols=58 Identities=14% Similarity=0.343 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCC--CCCCcccHHHHHHHHHH-----------HHHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 58 PAFYTVCESFDQ--NKNGRLRLDDFISLCIF-----------LQSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 58 ~~~~~~~~~~d~--~~~~~l~~~eF~~~~~~-----------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
..+..+|..+|. +++|.|+.+++..++.. -..+..++..+|.+++|.| ++.+|+.+..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I--~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKV--DFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcC--cHHHHHHHHH
Confidence 456788999999 89999999999999864 3558899999999999987 8888887654
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.25 E-value=1.1e-05 Score=40.89 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHHH
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
+..+|..+|.+++|.|++++|...+... ..+..+|+.++.+++|.| +..+|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKI--DFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeE--eHHHHHHH
Confidence 4567889999999999999999998765 557889999999999987 77777654
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.23 E-value=3.2e-06 Score=37.72 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=22.0
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHH-HcC
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALV-KIG 52 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~-~~~ 52 (121)
+++.+|+.+| +++|.|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 3577888888 6888888888888887 454
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.23 E-value=5.6e-06 Score=43.30 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHH----HHHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 61 YTVCESFDQNKNGRLRLDDFISLCIFL----QSARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 61 ~~~~~~~d~~~~~~l~~~eF~~~~~~~----~~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
+.+|..+|.+++|.|+.+|+..++... ..+..+|+.+|.+++|.| +..+|+.+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i--~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKL--DKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcC--CHHHHHHHH
Confidence 467889999999999999999888554 447899999999999988 677776654
No 61
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.22 E-value=7.3e-06 Score=46.28 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHH----HHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 58 PAFYTVCESFDQNKNGRLRLDDFISLCIFL----QSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 58 ~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~----~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
..+...|..+|.+++|.|+.+++..++... ..+..++..+|.+++|.| ++++|+.+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I--~~~eF~~~~~ 71 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGEL--DKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc--CHHHHHHHHH
Confidence 356788999999999999999999998654 557899999999999988 7778886654
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.22 E-value=1e-05 Score=45.10 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHHHhCC-CCCCcccHHHHHHHHHH-H-------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 59 AFYTVCESFDQ-NKNGRLRLDDFISLCIF-L-------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 59 ~~~~~~~~~d~-~~~~~l~~~eF~~~~~~-~-------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.+...|+.||. +++|.|+..|+..++.. + ..+..+++..|.+++|.| ++.+|+.+..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I--~F~EF~~l~~~ 75 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKL--SFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCC--cHHHHHHHHHH
Confidence 46678999999 99999999999999977 4 347889999999999998 88888877654
No 63
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.19 E-value=1.2e-05 Score=45.07 Aligned_cols=59 Identities=15% Similarity=0.359 Sum_probs=49.0
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-H----------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 58 PAFYTVCESFD-QNKNG-RLRLDDFISLCIF-L----------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 58 ~~~~~~~~~~d-~~~~~-~l~~~eF~~~~~~-~----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
+.+...|..+| .+++| .|+.+|+..++.. + ..+..+++.+|.+++|.| ++.+|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I--~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEV--DFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcC--cHHHHHHHHHH
Confidence 45788999997 99999 5999999999864 2 448899999999999988 78888876543
No 64
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.17 E-value=5.3e-05 Score=53.22 Aligned_cols=92 Identities=23% Similarity=0.408 Sum_probs=66.5
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHc---CCC--------------------------------------------
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKI---GFS-------------------------------------------- 54 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~---~~~-------------------------------------------- 54 (121)
..+...|+.+| +++|+|+....+.++... +.|
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 35677788888 577888877777766652 111
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH----------HHHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL----------QSARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 55 ~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
-....++.+|+.+|.++.|.|+.+||...|..+ ..+.++-...|-++||.| +..+|+.+.
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~I--DlNEfLeAF 613 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKI--DLNEFLEAF 613 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcc--cHHHHHHHH
Confidence 011235688889999999999999999998655 336677788899999999 555677653
No 65
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.15 E-value=1.4e-05 Score=44.52 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=49.3
Q ss_pred HHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----H------HHHHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 59 AFYTVCESFD-QNKNG-RLRLDDFISLCIF-----L------QSARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 59 ~~~~~~~~~d-~~~~~-~l~~~eF~~~~~~-----~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
.+...|+.+| .+++| .|+.+|+..++.. + ..+.++++..|++++|.| ++.+|+.+..+.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v--~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGEC--DFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHHH
Confidence 4678899998 78999 5999999999987 3 338899999999999988 888898776543
No 66
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.13 E-value=1.7e-05 Score=44.63 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=47.4
Q ss_pred HHHHHHHHhC-CCCCC-cccHHHHHHHHHHH-----------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 59 AFYTVCESFD-QNKNG-RLRLDDFISLCIFL-----------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 59 ~~~~~~~~~d-~~~~~-~l~~~eF~~~~~~~-----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.+..+|..|| .+++| .|+..|+..++... ..+..+++..|.+++|.| ++.+|+.+..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~I--df~EF~~l~~~ 81 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEV--DFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHH
Confidence 4566789998 67888 59999999998552 248899999999999988 88888887654
No 67
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.12 E-value=1.1e-05 Score=45.41 Aligned_cols=60 Identities=10% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----------HHHHHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 58 PAFYTVCESFDQ-NK-NGRLRLDDFISLCIF-----------LQSARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 58 ~~~~~~~~~~d~-~~-~~~l~~~eF~~~~~~-----------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
..+...|..+|. ++ +|.|+.+|+..++.. ...+..+++.+|.+++|.| ++.+|+.+..+.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I--~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKV--NFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHHH
Confidence 456788999986 86 699999999998764 1347899999999999988 788888766543
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.07 E-value=2.5e-05 Score=39.24 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=38.8
Q ss_pred CCCceeHHHHHHHHHHH-------HHHHHHhhHhh-CCCCeecHHHHHHHHHH
Q 033370 6 RNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVK 50 (121)
Q Consensus 6 ~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~g~i~~~el~~~l~~ 50 (121)
.+|.|+.++|..++..+ +.+..+|..+| +++|.|++.||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36999999999988542 57899999999 79999999999998864
No 69
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.06 E-value=3.7e-05 Score=54.03 Aligned_cols=110 Identities=18% Similarity=0.326 Sum_probs=81.5
Q ss_pred cccCCCCceeHHHHHH--HHHHH------------------HHHHHH---hhHhh-CCCCeecHHHHHHHHHHcCCCCCH
Q 033370 2 YDFDRNGTMSFEEFVE--LNKFL------------------LKVQHA---FSDLE-RGRGYLVPDNVYEALVKIGFSLDS 57 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~--~~~~~------------------~~~~~~---f~~~D-~~~g~i~~~el~~~l~~~~~~~~~ 57 (121)
.|+.++|.|+..+..+ +...+ +....+ |-.+| +.+|.|++++++..-.. .++.
T Consensus 234 ~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~ 310 (493)
T KOG2562|consen 234 LNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTE 310 (493)
T ss_pred eCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhh
Confidence 4677889999999765 22221 223334 67778 68999999999877643 3456
Q ss_pred HHHHHHHH----HhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhhCCCCCceEeeehhhhHH
Q 033370 58 PAFYTVCE----SFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRITLDLNQFIF 114 (121)
Q Consensus 58 ~~~~~~~~----~~d~~~~~~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~ 114 (121)
..++.+|. ..-.-.+|+++|++|+.++..+ ..+.-+|+-.|.+++|.++..+.+++.
T Consensus 311 ~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 311 RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 67788887 2334578999999999999876 338889999999999999887766653
No 70
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.05 E-value=3.2e-05 Score=43.14 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=46.1
Q ss_pred HHHHHHHH-hCCCCCC-cccHHHHHHHHHHH-----------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 59 AFYTVCES-FDQNKNG-RLRLDDFISLCIFL-----------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 59 ~~~~~~~~-~d~~~~~-~l~~~eF~~~~~~~-----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.+..+|+. ++.++++ .|+.+||..++... ..+.++++..|.+++|.| ++.+|+.+...
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I--~f~EF~~l~~~ 80 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQL--DFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcC--cHHHHHHHHHH
Confidence 35667777 5566765 89999999999764 458899999999999988 88888876554
No 71
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.95 E-value=3.7e-05 Score=53.75 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCCCCCceEeeehhhhHHH
Q 033370 51 IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 51 ~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
.|.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.| +..+|...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~I--s~eEf~~~ 382 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKI--TPEEMRAG 382 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCC--cHHHHHHH
Confidence 45667777888889999999999999998864 3567888898888887 66666553
No 72
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.90 E-value=6.6e-06 Score=47.91 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~ 82 (121)
.+...|..+| +++|.|+..|+..+...+ .....-+..+++.+|.++++.|+..|+..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4555666666 566666666666554433 22223345666666666666666666654
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.88 E-value=8.3e-05 Score=52.05 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=44.8
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
..+..+|+.+| +++|.|+..|+.. ++.+|..+|.|++|.|+++||...+..
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 35789999999 7999999999941 578999999999999999999998764
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.87 E-value=3e-05 Score=32.82 Aligned_cols=20 Identities=20% Similarity=0.674 Sum_probs=8.6
Q ss_pred HHHHhCCCCCCcccHHHHHH
Q 033370 63 VCESFDQNKNGRLRLDDFIS 82 (121)
Q Consensus 63 ~~~~~d~~~~~~l~~~eF~~ 82 (121)
+|+.+|.|++|.|+++||..
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 34444444444444444433
No 75
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.85 E-value=6.3e-05 Score=41.86 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHhCC-CC-CCcccHHHHHHHHHH---------HHHHHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 60 FYTVCESFDQ-NK-NGRLRLDDFISLCIF---------LQSARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 60 ~~~~~~~~d~-~~-~~~l~~~eF~~~~~~---------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
+-.+|..|+. ++ +|.|+.+|+..++.. ...+.++++..|.+++|.| ++.+|+....++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~I--df~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEV--NFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHH
Confidence 4467888886 56 789999999999963 1448899999999999988 788888766543
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=4.2e-05 Score=32.34 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.4
Q ss_pred HHHHhhHhh-CCCCeecHHHHHHHH
Q 033370 25 VQHAFSDLE-RGRGYLVPDNVYEAL 48 (121)
Q Consensus 25 ~~~~f~~~D-~~~g~i~~~el~~~l 48 (121)
+++.|+.+| +++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 356888999 689999999988753
No 77
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.77 E-value=0.00011 Score=44.29 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHH-HHHHHHHHhCCCCCCcccHHHHHHHHHHHHH-----------HHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSP-AFYTVCESFDQNKNGRLRLDDFISLCIFLQS-----------ARN 92 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~-----------~~~ 92 (121)
+.+.+.+. +|.|.+++++|..++..+....+.+ .+...|+.||-++++.|.-++...++..+.+ ...
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 44556666 6888888888888877654332322 3556677788888888888887777765522 456
Q ss_pred HhhhhCCCCCceEeeehhh
Q 033370 93 LFNSFDTAKQGRITLDLNQ 111 (121)
Q Consensus 93 ~f~~~d~~~~g~i~~~~~~ 111 (121)
+....|.|++|.+++.+.+
T Consensus 154 vieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred HHHHhcCCCCCcccHHHHH
Confidence 6677788888888554433
No 78
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.68 E-value=0.00034 Score=49.96 Aligned_cols=116 Identities=19% Similarity=0.335 Sum_probs=78.4
Q ss_pred CcccCCCCceeHHHHHHHHHH-----------------------------------------HHHHHHHhhHhh-CCCCe
Q 033370 1 MYDFDRNGTMSFEEFVELNKF-----------------------------------------LLKVQHAFSDLE-RGRGY 38 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~-----------------------------------------~~~~~~~f~~~D-~~~g~ 38 (121)
+||+.++|.++++++..++.+ .+..+..|+..| .++|.
T Consensus 116 lFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~ 195 (694)
T KOG0751|consen 116 LFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGF 195 (694)
T ss_pred HhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCe
Confidence 478888888888888777653 145788899999 48999
Q ss_pred ecHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHH---HHHHHHhhhhCCCCCceEeeehhhhHH
Q 033370 39 LVPDNVYEALVKIGFSLDSPAFYTVCESFD-QNKNGRLRLDDFISLCIFL---QSARNLFNSFDTAKQGRITLDLNQFIF 114 (121)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d-~~~~~~l~~~eF~~~~~~~---~~~~~~f~~~d~~~~g~i~~~~~~~~~ 114 (121)
|+.-+++..+......+....++..+-... .+...++++..|..+-.-+ +-+++++..+. +....+.++++|+..
T Consensus 196 is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~-~~~~d~~~~kdq~~~ 274 (694)
T KOG0751|consen 196 ISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLA-GTRKDVEVTKDQFSL 274 (694)
T ss_pred eeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhc-ccccchhhhHHHHHH
Confidence 999999998877665555555655555543 3333458888776555444 44566666654 234445667888776
Q ss_pred Hhh
Q 033370 115 CTA 117 (121)
Q Consensus 115 ~~~ 117 (121)
...
T Consensus 275 ~a~ 277 (694)
T KOG0751|consen 275 AAQ 277 (694)
T ss_pred HHH
Confidence 654
No 79
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.64 E-value=0.00017 Score=47.15 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=69.4
Q ss_pred cccCCCCceeHHHHHHHHHHH----------------------------HHHHHHhhHhh-C-CCCeecHHHHHHHHHHc
Q 033370 2 YDFDRNGTMSFEEFVELNKFL----------------------------LKVQHAFSDLE-R-GRGYLVPDNVYEALVKI 51 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~----------------------------~~~~~~f~~~D-~-~~g~i~~~el~~~l~~~ 51 (121)
.|+|++|.|+|+||.-.+... +.....+-+.| + .+-.++-.|+..+|...
T Consensus 149 VDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPE 228 (362)
T KOG4251|consen 149 VDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPE 228 (362)
T ss_pred eCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChH
Confidence 589999999999997544321 11233333444 2 23456667777777543
Q ss_pred C-CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH---------------HHHHHHhhhhCCCCCceEeeeh
Q 033370 52 G-FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL---------------QSARNLFNSFDTAKQGRITLDL 109 (121)
Q Consensus 52 ~-~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~---------------~~~~~~f~~~d~~~~g~i~~~~ 109 (121)
- ..+....+..+++.+|.+++..++.++|++...-- ...++.=..+|.+.+|.++..+
T Consensus 229 hSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeE 302 (362)
T KOG4251|consen 229 HSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEE 302 (362)
T ss_pred hhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHH
Confidence 2 22344567888899999999999999998765210 1123333456888899885544
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.57 E-value=0.00016 Score=47.24 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=31.4
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcC---CCCCHHHHHHHHHHhCCCCCCcccHHHHH
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG---FSLDSPAFYTVCESFDQNKNGRLRLDDFI 81 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~l~~~eF~ 81 (121)
.++..+|...| +.+++|+..|+++.+..-. ..-...+.+..|+..|++++|+|+|+||.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 34556666666 4566666666666654411 00111223444555566666666666664
No 81
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.54 E-value=0.00022 Score=48.36 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred CcccCCCCceeHHHHHHHHHH-------HHHHHHHhhHhh-CCCCeecHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCC
Q 033370 1 MYDFDRNGTMSFEEFVELNKF-------LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNK 71 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~-------~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~ 71 (121)
+||.+.+|.++|.|...-... ...++-+|+.|+ ..+|.+...+|..+|... |.. .-.+--+|+..+...
T Consensus 267 LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~lf~~i~q~d 344 (412)
T KOG4666|consen 267 LFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVLFPSIEQKD 344 (412)
T ss_pred eecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccccchhhhccc
Confidence 466667777777766553332 245566677777 566766666666666542 221 112334566666666
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhh
Q 033370 72 NGRLRLDDFISLCIFLQSARNLFNS 96 (121)
Q Consensus 72 ~~~l~~~eF~~~~~~~~~~~~~f~~ 96 (121)
+++|.+++|-.++.....+..+|..
T Consensus 345 ~~ki~~~~f~~fa~~~p~~a~~~~~ 369 (412)
T KOG4666|consen 345 DPKIYASNFRKFAATEPNLALSELG 369 (412)
T ss_pred CcceeHHHHHHHHHhCchhhhhhhc
Confidence 6677777777766655554444433
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.53 E-value=0.00021 Score=31.69 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
++.+|+.+|.+++|.|+.+||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 34556666666666666666665554
No 83
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.53 E-value=0.0007 Score=48.62 Aligned_cols=66 Identities=18% Similarity=0.421 Sum_probs=56.8
Q ss_pred HHHHHHHhhHhhCCCCeecHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 22 LLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSL---DSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 22 ~~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~---~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+..+...|...|+++|+++..++..++...+.+. ..++++.++...+.+.+|+|+|++|+..+..+
T Consensus 18 l~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4567888999998999999999999999987653 46788999999999999999999999976554
No 84
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.52 E-value=0.00075 Score=37.49 Aligned_cols=57 Identities=16% Similarity=0.364 Sum_probs=44.9
Q ss_pred HHHHHHHhCCC--CCCcccHHHHHHHHHH-----------HHHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 60 FYTVCESFDQN--KNGRLRLDDFISLCIF-----------LQSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 60 ~~~~~~~~d~~--~~~~l~~~eF~~~~~~-----------~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
+-.+|..|+.. .+|.|+.+|+..++.. ...+..+|+.+|.+++|.| ++.+|+.+...
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I--~f~eF~~~~~~ 79 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQL--SFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcC--cHHHHHHHHHH
Confidence 44677777754 4689999999999863 3458899999999999988 88888877654
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.49 E-value=0.00043 Score=37.92 Aligned_cols=62 Identities=16% Similarity=0.324 Sum_probs=51.2
Q ss_pred HHHHhhHhhCCCCeecHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q 033370 25 VQHAFSDLERGRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFDQN----KNGRLRLDDFISLCIF 86 (121)
Q Consensus 25 ~~~~f~~~D~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~l~~~eF~~~~~~ 86 (121)
+..+|..+-.+.+.|+.++|..+|+.... ..+...+..++..+.++ ..+.+++++|..++..
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 57788888767899999999999988653 36788999999998544 4689999999999753
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.49 E-value=0.00075 Score=33.41 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=35.6
Q ss_pred ceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHc
Q 033370 9 TMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 51 (121)
Q Consensus 9 ~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~ 51 (121)
+++|.|...+++.+ ..+..+|+.+| .++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47889988888854 57899999999 599999999999998764
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=97.41 E-value=0.0017 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.393 Sum_probs=44.0
Q ss_pred CcccCCCCceeHHHHHHHHHHH-------HHHHHHhhHhh-CCC-CeecHHHHHHHHHH
Q 033370 1 MYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGR-GYLVPDNVYEALVK 50 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~-g~i~~~el~~~l~~ 50 (121)
++|+++.|.|...++..+++.+ ..++.+.+.+| ++. |.|+++.|..+++.
T Consensus 6 ~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5799999999999999999875 57899999999 565 99999999998864
No 88
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.94 E-value=0.009 Score=33.39 Aligned_cols=56 Identities=16% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHH-----------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 60 FYTVCESFDQNKNGRLRLDDFISLCIFL-----------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 60 ~~~~~~~~d~~~~~~l~~~eF~~~~~~~-----------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
+-.+|..|+ ...+.++..||..++..- ..+..+++..|.++||.| ++.+|+....+
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~v--dF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKV--GFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHH
Confidence 445777887 445689999999999432 337889999999999988 88888877654
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.94 E-value=0.0014 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=11.5
Q ss_pred HHHHHhCCCCCCcccHHHHHHHH
Q 033370 62 TVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 62 ~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
.+++.++.+++|.|++.+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34455555555555555554443
No 90
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.94 E-value=0.0026 Score=40.47 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHH------HHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 58 PAFYTVCESFDQNKNGRLRLDDFISLCIFLQ------SARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 58 ~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~------~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
+..+.+|+.||.+.||.|++.|...+|-++. .++...+..|.|.+|.| ++.+|+.+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgkl--SfreflLIf 161 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKL--SFREFLLIF 161 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccch--hHHHHHHHH
Confidence 3467899999999999999999999997762 26788899999999998 777777653
No 91
>PLN02952 phosphoinositide phospholipase C
Probab=96.88 E-value=0.019 Score=42.59 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=60.8
Q ss_pred CCCceeHHHHHHHHHHH--------HHHHHHhhHhhCCCCeecHHHHHHHHHHcCC--CCCHHHHHHHHHHhC-------
Q 033370 6 RNGTMSFEEFVELNKFL--------LKVQHAFSDLERGRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFD------- 68 (121)
Q Consensus 6 ~~g~i~~~ef~~~~~~~--------~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d------- 68 (121)
+.|.++|++|..+.+.+ ..+..+|..+-.+.+.|+.++|..+|..... ..+.+.++.++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 45899999998887755 4789999988755578999999999999753 356666777765441
Q ss_pred CCCCCcccHHHHHHHHHH
Q 033370 69 QNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 69 ~~~~~~l~~~eF~~~~~~ 86 (121)
....+.++++.|..++..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112345899999999863
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.72 E-value=0.0029 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHhhHhh-CCCCeecHHHHHHHHHH
Q 033370 25 VQHAFSDLE-RGRGYLVPDNVYEALVK 50 (121)
Q Consensus 25 ~~~~f~~~D-~~~g~i~~~el~~~l~~ 50 (121)
++.+|..+| +++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467888888 57889999999888764
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.71 E-value=0.0024 Score=43.48 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=69.5
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH-----HHHHhh
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS-----ARNLFN 95 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~-----~~~~f~ 95 (121)
..++..|..|| +++|.++..|--..+.-+ +.+..+..++..|++|+...||.+.-.++.-.+..... +.-+|.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 56789999999 589999999976666664 46678889999999999999999988888666654322 467899
Q ss_pred hhCCCCCceEeeeh
Q 033370 96 SFDTAKQGRITLDL 109 (121)
Q Consensus 96 ~~d~~~~g~i~~~~ 109 (121)
..++..+|.|+.+.
T Consensus 339 ~i~q~d~~ki~~~~ 352 (412)
T KOG4666|consen 339 SIEQKDDPKIYASN 352 (412)
T ss_pred hhhcccCcceeHHH
Confidence 99998999985544
No 94
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.62 E-value=0.045 Score=34.14 Aligned_cols=14 Identities=21% Similarity=0.454 Sum_probs=12.1
Q ss_pred CcccCCCCceeHHH
Q 033370 1 MYDFDRNGTMSFEE 14 (121)
Q Consensus 1 ~~d~~~~g~i~~~e 14 (121)
.+|.|++|.|...|
T Consensus 15 FFDrd~DGiI~P~d 28 (174)
T PF05042_consen 15 FFDRDKDGIIYPWD 28 (174)
T ss_pred eeCCCCCeeECHHH
Confidence 47999999998877
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.56 E-value=0.0017 Score=37.82 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH----HHHHHHhhhhCCCCCceEeeehhhhHHH
Q 033370 52 GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL----QSARNLFNSFDTAKQGRITLDLNQFIFC 115 (121)
Q Consensus 52 ~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~----~~~~~~f~~~d~~~~g~i~~~~~~~~~~ 115 (121)
....-...+...|..+|.+++|.|+..|...+...+ ..++..+..-|.+++|.| +..||..|
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~I--s~~EW~~C 113 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKI--SLDEWCNC 113 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSE--EHHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCC--CHHHHccC
Confidence 344456788999999999999999999987765422 337788899999999999 77778754
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.51 E-value=0.027 Score=40.19 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=50.1
Q ss_pred cccCCCCceeHHHHHHHHHH-H--HHHHHHhh----Hhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCC
Q 033370 2 YDFDRNGTMSFEEFVELNKF-L--LKVQHAFS----DLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNG 73 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~-~--~~~~~~f~----~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 73 (121)
+|.+.+|.|+.++...+-.. + .-+..+|. ..- ...|.++.++|..++-.+...-++.-++..|+..|.+++|
T Consensus 287 LD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G 366 (493)
T KOG2562|consen 287 LDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDG 366 (493)
T ss_pred hccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCC
Confidence 46666677777666654432 1 23455555 111 2456777777777776665554555567777777777777
Q ss_pred cccHHHHHHHH
Q 033370 74 RLRLDDFISLC 84 (121)
Q Consensus 74 ~l~~~eF~~~~ 84 (121)
.|+..|.-.+.
T Consensus 367 ~Lt~~el~~fy 377 (493)
T KOG2562|consen 367 ILTLNELRYFY 377 (493)
T ss_pred cccHHHHHHHH
Confidence 77777654444
No 97
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.44 E-value=0.0086 Score=48.29 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------------HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 58 PAFYTVCESFDQNKNGRLRLDDFISLCIFL-------------QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 58 ~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
.++..+|+.||.+.+|++++.+|..|+..+ +.+.++....|++.+|+| +..+||..+++
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~V--sl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYV--SLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcc--cHHHHHHHHHh
Confidence 346789999999999999999999999654 468899999999999999 88889988775
No 98
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.41 E-value=0.052 Score=33.38 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHhhHh----hCCCCeecHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 26 QHAFSDL----ERGRGYLVPDNVYEALVKIGF---SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 26 ~~~f~~~----D~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+.+|..| ..+...|+-..|..+++.++. .++...+..+|..+-..+..+|+|++|+..+..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455555 346789999999999999763 4788889999999876677789999999998655
No 99
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.17 E-value=0.036 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=38.0
Q ss_pred CCCceeHHHHHHHHHH----HHHHHHHhhHhh-CCCCeecHHHHHHHHHHc
Q 033370 6 RNGTMSFEEFVELNKF----LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 51 (121)
Q Consensus 6 ~~g~i~~~ef~~~~~~----~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~ 51 (121)
++|.|+-++-..++.. ...+..+|...| +++|.++.+||.-+++-+
T Consensus 22 ~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 22 QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 5699999998887774 368899999999 799999999998887653
No 100
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.049 Score=31.75 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=40.8
Q ss_pred HhhHhh-CCCCeecHHHHHHHHHHc------CC---C-CCHHHHHHHHHH----hCCCCCCcccHHHHHH
Q 033370 28 AFSDLE-RGRGYLVPDNVYEALVKI------GF---S-LDSPAFYTVCES----FDQNKNGRLRLDDFIS 82 (121)
Q Consensus 28 ~f~~~D-~~~g~i~~~el~~~l~~~------~~---~-~~~~~~~~~~~~----~d~~~~~~l~~~eF~~ 82 (121)
.|...| ++++.|+--|+..++... |. + .++.+++.++.. -|.+++|.|+|-||+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 467788 789999999999888763 22 2 345566666654 4778999999999975
No 101
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.88 E-value=0.41 Score=36.44 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=57.9
Q ss_pred cccCCCCceeHHHHHHHHHHH------HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCc
Q 033370 2 YDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGR 74 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 74 (121)
.|.+.+|.+++.+-..+.+.+ ..+...|+..+ .+++.+...++..+...++.++ ++..++..+.. +.+.
T Consensus 145 ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~-~~~~ 220 (746)
T KOG0169|consen 145 ADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSH-GKEY 220 (746)
T ss_pred HccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhC-CCCc
Confidence 467788888888876665543 45677777777 4788888888888877766554 56667777753 3677
Q ss_pred ccHHHHHHHHHHH
Q 033370 75 LRLDDFISLCIFL 87 (121)
Q Consensus 75 l~~~eF~~~~~~~ 87 (121)
++.++...++...
T Consensus 221 ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 221 LSTDDLLRFLEEE 233 (746)
T ss_pred cCHHHHHHHHHHh
Confidence 8888777777544
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.61 E-value=0.037 Score=41.71 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=68.7
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH---HHHHHHhhhhC
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL---QSARNLFNSFD 98 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~---~~~~~~f~~~d 98 (121)
..+..+|...| +++|.+++.+...+++.+...+....+..+++..+..+++++...+|..+...+ ..+..+|..+-
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s 215 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh
Confidence 45788899999 689999999999999999988888999999999988899999999999887654 34677777776
Q ss_pred CCCCceE
Q 033370 99 TAKQGRI 105 (121)
Q Consensus 99 ~~~~g~i 105 (121)
.+ .+.+
T Consensus 216 ~~-~~~l 221 (746)
T KOG0169|consen 216 HG-KEYL 221 (746)
T ss_pred CC-CCcc
Confidence 44 5555
No 103
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.93 E-value=0.06 Score=33.61 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC---CCCcccHHHHHHHHH--------------
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQN---KNGRLRLDDFISLCI-------------- 85 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~l~~~eF~~~~~-------------- 85 (121)
.+++-...+| +++|.|.+-|--+.++.+|..+.-..+..++=....+ ..+.+.-+-|-..+.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4567778899 6999999999999999988765444332222111000 011111111111110
Q ss_pred ------HHHHHHHHhhhhCCCCCceEeeehhhhHHHhhccc
Q 033370 86 ------FLQSARNLFNSFDTAKQGRITLDLNQFIFCTANCR 120 (121)
Q Consensus 86 ------~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 120 (121)
...+..++|.+|++.+.+.+ +..|...++.++|
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~L--T~~E~~~m~~~nr 126 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDAL--TLRELWRMLKGNR 126 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCc--CHHHHHHHHHhcc
Confidence 12557889999988777777 6666666666554
No 104
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.66 E-value=0.12 Score=28.10 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHH--------HHHHHHhhhhCCC----CCceEeeehhhhHHHhhc
Q 033370 59 AFYTVCESFDQNKNGRLRLDDFISLCIFL--------QSARNLFNSFDTA----KQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 59 ~~~~~~~~~d~~~~~~l~~~eF~~~~~~~--------~~~~~~f~~~d~~----~~g~i~~~~~~~~~~~~~ 118 (121)
++..+|..+.. +.+.|+.++|..++... ..+..++.+|.++ ..+.+ +.+.|...+++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~l--t~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQL--TLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEE--EHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCc--CHHHHHHHHCC
Confidence 46788999965 77899999999999543 4567777777543 35666 77777766654
No 105
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.56 E-value=0.081 Score=36.59 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
.+-.+|..+| +.++.|+..|+..+- ....+.-++.+|..+|...+|.|+-.|++.+.
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 3566777777 567777777776553 33344556777777777777777777777665
No 106
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.43 E-value=0.033 Score=38.19 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHhhHhh-CCCCeecHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 25 VQHAFSDLE-RGRGYLVPDNVYEALVKIG-FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 25 ~~~~f~~~D-~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
+...|.++| +.++.|...|++.+-+-+. ..-...-...+++-+|.|+|..|+++|+..++.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 455688888 5678888777544443332 222334456788888888888888888888764
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.13 Score=39.32 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=53.0
Q ss_pred HHHHHhhHhhC-CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Q 033370 24 KVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS 89 (121)
Q Consensus 24 ~~~~~f~~~D~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~ 89 (121)
+.+..|+..|+ .+|.++-..=+.+|...+ ++.-.+..++..-|.|+||+|+-+||+-.|.-...
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHH
Confidence 57889999995 899999999999986654 45566788999999999999999999887754433
No 108
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.66 E-value=0.14 Score=38.16 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDF 80 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF 80 (121)
-++.+|+..| ...|.|++.++...|..+...-..+.+..+++.++++.+ .++.++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3566677777 366777777777777666554444556666666766666 5666655
No 109
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.41 E-value=0.25 Score=36.58 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=58.5
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQ 88 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~ 88 (121)
...+..|..+| ++.+.+....+...++..+..++.+.++...+..+.+-.|.+...||..++....
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 34567899999 5899999999999999988889999999999999988899999999999987653
No 110
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.84 E-value=0.16 Score=34.97 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=39.2
Q ss_pred cccCCCCceeHHHHHHHHHHH-------HHHHHHhhHhh-CCCCeecHHHHHHHHHHc
Q 033370 2 YDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLE-RGRGYLVPDNVYEALVKI 51 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D-~~~g~i~~~el~~~l~~~ 51 (121)
+|+|.++.|+-.|+.-+-..+ +..+..|+.+| +++..|++.|+...|...
T Consensus 342 LdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 342 LDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred ecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 688999999988855443322 34688899999 899999999999988654
No 111
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.76 E-value=1.4 Score=34.67 Aligned_cols=77 Identities=19% Similarity=0.391 Sum_probs=59.6
Q ss_pred eeHHHHHHHHHHH---HHHHHHhhHhh-CCCCeecHHHHHHHHHHcC----------CCCCHHHHHHHHHHhCCC----C
Q 033370 10 MSFEEFVELNKFL---LKVQHAFSDLE-RGRGYLVPDNVYEALVKIG----------FSLDSPAFYTVCESFDQN----K 71 (121)
Q Consensus 10 i~~~ef~~~~~~~---~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~ 71 (121)
.+++.|..++.++ ..+..+|..+. +....+|..+|..+|+.-. .+..++.+..+++.+..+ .
T Consensus 205 f~~e~f~~~l~klcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred ccHHHHHHHHHhcCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 4555666666654 67899999999 5679999999999998732 235677889999998766 4
Q ss_pred CCcccHHHHHHHHHH
Q 033370 72 NGRLRLDDFISLCIF 86 (121)
Q Consensus 72 ~~~l~~~eF~~~~~~ 86 (121)
.|.++-+.|+.++.-
T Consensus 285 ~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccccchhhhHHHhhC
Confidence 588999999988843
No 112
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.65 E-value=1.2 Score=34.75 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=59.1
Q ss_pred HHHHHHHhhHhhC-CCCeecHHHHHHHHHHcCCCCCH-----HHHHHHHHHhCCCCCCcccHHHHHHHHHHH-------H
Q 033370 22 LLKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDS-----PAFYTVCESFDQNKNGRLRLDDFISLCIFL-------Q 88 (121)
Q Consensus 22 ~~~~~~~f~~~D~-~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-------~ 88 (121)
+.++++.|.-++. ..+.++.+++..+|..+|+.... .++..+...-+.+..|++++.+|...+.+. .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 4688999999994 77889999999999999987664 234455555566667899999999998654 2
Q ss_pred HHHHHhhhhCCCC
Q 033370 89 SARNLFNSFDTAK 101 (121)
Q Consensus 89 ~~~~~f~~~d~~~ 101 (121)
++...|+.+-+++
T Consensus 826 r~i~s~~d~~ktk 838 (890)
T KOG0035|consen 826 RAILAFEDWAKTK 838 (890)
T ss_pred HHHHHHHHHHcch
Confidence 3455555555443
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.64 E-value=0.46 Score=33.07 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH-
Q 033370 13 EEFVELNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGF---SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL- 87 (121)
Q Consensus 13 ~ef~~~~~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~- 87 (121)
.|+.++-..| +..|..+= +.++......+..+-..+.. +.=...+-.||...|.+.++.|+..|.......-
T Consensus 204 qeL~~lg~RL---~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn 280 (434)
T KOG3555|consen 204 QELRRLGNRL---RDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN 280 (434)
T ss_pred HHHHHHHHHH---HHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCc
Confidence 4455555544 44454443 33333333333333222221 2335678899999999999999999987776433
Q ss_pred -HHHHHHhhhhCCCCCceEeeehhhhHHHh
Q 033370 88 -QSARNLFNSFDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 88 -~~~~~~f~~~d~~~~g~i~~~~~~~~~~~ 116 (121)
..++..|..-|...+|.| +..+|-.+.
T Consensus 281 E~CikpFfnsCD~~kDg~i--S~~EWC~CF 308 (434)
T KOG3555|consen 281 EACIKPFFNSCDTYKDGSI--STNEWCYCF 308 (434)
T ss_pred hhHHHHHHhhhcccccCcc--ccchhhhhh
Confidence 448899999999999988 666675543
No 114
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.63 E-value=1.5 Score=32.77 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=59.1
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHH-cCCCCCHHHHHHHHH---HhCCC--CCCcccHHHHHHHHHH---------
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVCE---SFDQN--KNGRLRLDDFISLCIF--------- 86 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~---~~d~~--~~~~l~~~eF~~~~~~--------- 86 (121)
..+..+|...| +++|.++-.|+-.+=+. ++.++.+.+++.+-. ..-++ .+..++...|+-+...
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~Et 274 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHET 274 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccccc
Confidence 57899999999 79999999887666555 356666655443332 22111 2335667777655421
Q ss_pred ---------------------------------------HHHHHHHhhhhCCCCCceEeeehhhh
Q 033370 87 ---------------------------------------LQSARNLFNSFDTAKQGRITLDLNQF 112 (121)
Q Consensus 87 ---------------------------------------~~~~~~~f~~~d~~~~g~i~~~~~~~ 112 (121)
...+..+|.+||.|+||.++-.+.+-
T Consensus 275 tW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~ 339 (625)
T KOG1707|consen 275 TWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKD 339 (625)
T ss_pred hhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 13368999999999999886555433
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=1.4 Score=34.05 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=48.3
Q ss_pred HHHHhhHhh---CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 25 VQHAFSDLE---RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 25 ~~~~f~~~D---~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
..+.+.+|+ ++.|+|+-..-++++-..+ ++..++..++...|.|+||+++-.||...|..
T Consensus 15 r~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 15 RQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 344455555 4789999999999986654 56678899999999999999999999887754
No 116
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.84 E-value=0.84 Score=34.28 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhhCCCCCceE
Q 033370 56 DSPAFYTVCESFDQNKNGRLRLDDFISLCIFL------QSARNLFNSFDTAKQGRI 105 (121)
Q Consensus 56 ~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i 105 (121)
+....+.+|...|.+.+|.|+|.+++..+..+ ++++-+|+.+|.+++ ..
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~ 607 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-EL 607 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cc
Confidence 34456889999999999999999999998665 568889999998877 44
No 117
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.21 E-value=2.8 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=37.8
Q ss_pred CceeHHHHHHHHHHH----HHHHHHhhHh-------h-CCCCeecHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCC
Q 033370 8 GTMSFEEFVELNKFL----LKVQHAFSDL-------E-RGRGYLVPDNVYEALVK-IGFSLDSPAFYTVCESFDQN 70 (121)
Q Consensus 8 g~i~~~ef~~~~~~~----~~~~~~f~~~-------D-~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~ 70 (121)
+.|+-+||..+-+.. .+++.+.+.| . +..+.|+.+.|+.+|+. +...++.+.++.+|..+...
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 678888888876643 2334433333 2 23569999999999998 45668889999999988533
No 118
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.79 E-value=2.3 Score=23.79 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHHHc-------CC----CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALVKI-------GF----SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
++.+-+|.++.+++|.++...|..+|+.+ |. ...+..++.-|+.. .....|+.++|+.++...
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 56788899998899999999998888873 21 12334444444444 245679999999998754
No 119
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=1.4 Score=32.33 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
..-.-|+-.. +-.|.|+-.--+++..+. .+.-.++..+|+..|.+.||-|++.||+..+.
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3445566666 467999988888887654 45567899999999999999999999998874
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=88.50 E-value=1.1 Score=37.19 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=47.2
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
...|+.|| ++.|.|+..+|..++..- ...+..+++-++.....+.+..++|++|+.-.
T Consensus 4060 sdtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 45689999 699999999999998653 33566778888888877888899999998655
No 121
>PLN02952 phosphoinositide phospholipase C
Probab=88.43 E-value=6.8 Score=29.65 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=42.0
Q ss_pred CCCeecHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 35 GRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+.|.++++++..+.+.+.. ...+.++..+|..+.. +.+.|+.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHh
Confidence 4589999999988887753 3467899999999974 44689999999999654
No 122
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=3.1 Score=24.46 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCHHHHH-HHHHHhCCCCCCcccHHHHHHHHHHH--------------------HHHHHHhhhhCCCCCceEeeehhhhH
Q 033370 55 LDSPAFY-TVCESFDQNKNGRLRLDDFISLCIFL--------------------QSARNLFNSFDTAKQGRITLDLNQFI 113 (121)
Q Consensus 55 ~~~~~~~-~~~~~~d~~~~~~l~~~eF~~~~~~~--------------------~~~~~~f~~~d~~~~g~i~~~~~~~~ 113 (121)
++++.++ ..|+..|.++++.|+=-|.+..+.+. +-+..+.+--|.+++|+| ++-+|+
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~I--DYgEfl 140 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVI--DYGEFL 140 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCcee--eHHHHH
Confidence 4555443 46778899999999988888877654 224566676788999999 888887
Q ss_pred HH
Q 033370 114 FC 115 (121)
Q Consensus 114 ~~ 115 (121)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 53
No 123
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=84.45 E-value=4.8 Score=29.88 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHH---------HHHHHHhhhhCCCCCceEeeehhhhHHHhhcc
Q 033370 61 YTVCESFDQNKNGRLRLDDFISLCIFL---------QSARNLFNSFDTAKQGRITLDLNQFIFCTANC 119 (121)
Q Consensus 61 ~~~~~~~d~~~~~~l~~~eF~~~~~~~---------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 119 (121)
..-|...| ++.|.++..+....+... ..++++....+.+.+|.+ ++++|+...++.
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v--~fe~f~~~~~~l 86 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRV--EFEEFVGIFLNL 86 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCcc--CHHHHHHHHHhh
Confidence 34455667 888999999888777543 457788888899999977 888898877654
No 124
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.89 E-value=7.6 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=48.3
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHHHcCC--CCCHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFDQ-NKNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~l~~~eF~~~~~~ 86 (121)
.++..+|..+-. ++.++.++|..+|..... ..+.+.++.+++.+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 567888887764 479999999999998753 3567788888887642 23567999999999864
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=83.33 E-value=11 Score=28.45 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALVKIGF--SLDSPAFYTVCESFDQN----KNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~l~~~eF~~~~~~ 86 (121)
.++..+|..+-.+ +.++.++|..+|..... ..+.+.+..++..+... ..+.++.+.|..++..
T Consensus 24 ~ei~~if~~~s~~-~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSRN-GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcCC-CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4667777777633 57999999999988753 24567788889888543 3467999999999854
No 126
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.87 E-value=12 Score=28.38 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHHHcCC---CCCHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALVKIGF---SLDSPAFYTVCESFDQ-------NKNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~~~l~~~eF~~~~~~ 86 (121)
..+..+|..|-.+.+.++.++|..+|..... ..+.+.++.++..+.. -+.+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5789999999754489999999999999752 2356667777765421 13356999999998854
No 127
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.32 E-value=2.4 Score=16.87 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=12.4
Q ss_pred ccCCCCceeHHHHHHHHHH
Q 033370 3 DFDRNGTMSFEEFVELNKF 21 (121)
Q Consensus 3 d~~~~g~i~~~ef~~~~~~ 21 (121)
|.|++|+|+--++..+-++
T Consensus 1 DvN~DG~vna~D~~~lk~y 19 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKKY 19 (21)
T ss_dssp -TTSSSSSSHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHH
Confidence 5677888887777665443
No 128
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.08 E-value=1.4 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 55 ~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
++++.++.++..+-.+..|+|.|.||+.-..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5678899999999999999999999987654
No 129
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=80.44 E-value=8.5 Score=21.92 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHhhHhhC--CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHH
Q 033370 24 KVQHAFSDLER--GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD---QNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 24 ~~~~~f~~~D~--~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d---~~~~~~l~~~eF~~~~~~~ 87 (121)
.|..+=+.||. .+|.|+...|.+++ |..-+.+...++|.... .-....|+.+|...+|..+
T Consensus 28 ~W~~VE~RFd~La~dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAKDGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-BTTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcCCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 46666666662 58999999999998 66656666777776653 1234679999999888665
No 130
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.12 E-value=5 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHHHhhHhh-CCCCeecHHHHHHHHHHc
Q 033370 22 LLKVQHAFSDLE-RGRGYLVPDNVYEALVKI 51 (121)
Q Consensus 22 ~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~ 51 (121)
+.++.-+|+..| +.+|.++..||+.++.-+
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 478899999999 899999999999998763
No 131
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=77.95 E-value=2.3 Score=31.89 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=42.5
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSL-DSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
+-+..+|..+| +++|.++..|+..+....+... ....... .--.+..|.+++..|+..|.-
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~---~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD---STVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc---cceecccceeehhhHHHHHHH
Confidence 45789999999 7999999999999998875322 1110000 001236789999999988853
No 132
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.76 E-value=25 Score=25.71 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCCceeHHHHHHHHH----------HHHHHHHHhhHhh-CCCCeecHHHHHHHHHH-cCCCCCH-------------HHH
Q 033370 6 RNGTMSFEEFVELNK----------FLLKVQHAFSDLE-RGRGYLVPDNVYEALVK-IGFSLDS-------------PAF 60 (121)
Q Consensus 6 ~~g~i~~~ef~~~~~----------~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~-~~~~~~~-------------~~~ 60 (121)
|+...+-.||+.... ..+.++.+-+++| +.+|.|+.+|--.+++. +.+.-+. -.+
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~ItV 120 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHITV 120 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCccceeH
Confidence 444555666665332 1367888889999 58999999998888887 2222111 114
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH---HHHHHHHhhhhCCCCC--ceEeeehhhhHHHhhcc
Q 033370 61 YTVCESFDQNKNGRLRLDDFISLCIF---LQSARNLFNSFDTAKQ--GRITLDLNQFIFCTANC 119 (121)
Q Consensus 61 ~~~~~~~d~~~~~~l~~~eF~~~~~~---~~~~~~~f~~~d~~~~--g~i~~~~~~~~~~~~~~ 119 (121)
+.+|+++-.+.-..-+.++-+.++.. +.+..+.|+....+|. ..+.+...+|+...+|.
T Consensus 121 edLWeaW~~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgi 184 (575)
T KOG4403|consen 121 EDLWEAWKESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGI 184 (575)
T ss_pred HHHHHHHHhhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhcc
Confidence 55666554444444566666666644 3667788887665544 33456667777766654
No 133
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=77.15 E-value=6.5 Score=18.71 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHHHhhHhh-C--CCCeecHHHHHHHHHH
Q 033370 21 FLLKVQHAFSDLE-R--GRGYLVPDNVYEALVK 50 (121)
Q Consensus 21 ~~~~~~~~f~~~D-~--~~g~i~~~el~~~l~~ 50 (121)
.+..+..+|..|- . +...++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4566778888888 3 3579999999999876
No 134
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=75.24 E-value=23 Score=26.25 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh---C-----CCCCCcccHHHHHHHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF---D-----QNKNGRLRLDDFISLC 84 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~~~l~~~eF~~~~ 84 (121)
.-+|..+- ++++.+++..|..+|+..|..-++..+..++..+ + ..+...++.+-|..++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 34577777 5779999999999999999776655555555433 3 2344578889898776
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=74.59 E-value=6 Score=27.47 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHH----cCCCCC-HHH-----------HHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVK----IGFSLD-SPA-----------FYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~----~~~~~~-~~~-----------~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
...|...| +++|.++-.|+..+... +..+.+ .+. -+..++..|.+.+..|+.+||+.--.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 45677888 78899998888766554 222211 111 13455667899999999999987653
No 136
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=73.42 E-value=13 Score=20.53 Aligned_cols=51 Identities=4% Similarity=-0.001 Sum_probs=39.7
Q ss_pred CeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 37 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 37 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
..||.+||....+..+.++++..++.+........-...+-++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 578899999999999999999888888888866655666666666666554
No 137
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=72.43 E-value=1.7 Score=28.09 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=31.6
Q ss_pred HhhHhh-C-CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 28 AFSDLE-R-GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 28 ~f~~~D-~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
-|-++| . -+|+++-.|+.-+-. ...+-..-...+|+.+|.++++.|+.+|+..++
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 355566 3 467777766653321 111112234567777777888888887776654
No 138
>PLN02223 phosphoinositide phospholipase C
Probab=72.33 E-value=29 Score=26.12 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=45.8
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHH---HHcC--CCCCHHHHHHHHHHhCCC--------CCCcccHHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEAL---VKIG--FSLDSPAFYTVCESFDQN--------KNGRLRLDDFISLCIF 86 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~~~l~~~eF~~~~~~ 86 (121)
..+..+|..|-.+.|.++...+..+| .... ...+.+.++.++..+-.. ..+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 46788899887778899999999888 4432 235566777777765322 2256999999999854
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=1.7 Score=34.05 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=53.1
Q ss_pred HHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 23 LKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 23 ~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
.....+|...| .++|.|+..+....+.. ..+....+...+...+..+.|.+++.+|...+..+
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 45566899999 68999999999888865 55677889999999999999999999998777544
No 140
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=71.61 E-value=11 Score=26.23 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH----------------------HHHHHHhhh
Q 033370 40 VPDNVYEALVKI-GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL----------------------QSARNLFNS 96 (121)
Q Consensus 40 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~----------------------~~~~~~f~~ 96 (121)
|..+++..+... |...+.-.-..+|...|.+++|.++-.|.-++...- +.-..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 344555555443 222222223456777788999999888876665321 112356677
Q ss_pred hCCCCCceEeeehhhhHHHh
Q 033370 97 FDTAKQGRITLDLNQFIFCT 116 (121)
Q Consensus 97 ~d~~~~g~i~~~~~~~~~~~ 116 (121)
.|.+.+.-| +..+|+..+
T Consensus 305 vDtNqDRlv--tleEFL~~t 322 (442)
T KOG3866|consen 305 VDTNQDRLV--TLEEFLNDT 322 (442)
T ss_pred cccchhhhh--hHHHHHhhh
Confidence 888888876 666677654
No 141
>PHA02105 hypothetical protein
Probab=71.39 E-value=12 Score=19.05 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=33.1
Q ss_pred eecHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCCC--CcccHHHHHHHHHH
Q 033370 38 YLVPDNVYEALVKI---GFSLDSPAFYTVCESFDQNKN--GRLRLDDFISLCIF 86 (121)
Q Consensus 38 ~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--~~l~~~eF~~~~~~ 86 (121)
+++.++++.++..- .+++..+.+..+-..++...- -.++|+||.+.+..
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 57788888888763 245666767666666654433 35889999877643
No 142
>PHA02335 hypothetical protein
Probab=71.38 E-value=12 Score=21.64 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 033370 74 RLRLDDFISLCIFLQSARNLFNSFDTAKQ 102 (121)
Q Consensus 74 ~l~~~eF~~~~~~~~~~~~~f~~~d~~~~ 102 (121)
.|++++|..-+.+..-++..|++|...++
T Consensus 24 sVt~ddf~~DlkRi~yIkrllKRy~~~~~ 52 (118)
T PHA02335 24 SVTYDDFEEDLKRFKYIKRLFKRYLNTGE 52 (118)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 47777777777777777777777765544
No 143
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=70.69 E-value=6.8 Score=20.78 Aligned_cols=49 Identities=12% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 36 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 36 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+..+++.-+-.++.. .+++.....+...|+.-..+.|+.+||+..+...
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 445555555544433 3444555555555544456677777777776544
No 144
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=70.54 E-value=26 Score=22.66 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=47.7
Q ss_pred CCCCceeHHHHHHHHHH---HHHHHHHhhHhhC-CCCeecHHH-HHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHH
Q 033370 5 DRNGTMSFEEFVELNKF---LLKVQHAFSDLER-GRGYLVPDN-VYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDD 79 (121)
Q Consensus 5 ~~~g~i~~~ef~~~~~~---~~~~~~~f~~~D~-~~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~e 79 (121)
+=+|.|+.+++...... ..++. +.++. -++.|+..+ +...+..++.+. ++.++-+.+....+. .|.|
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~e~k---~l~~~vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp----~fKe 80 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPGEWK---ALKDGVLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP----GFKE 80 (220)
T ss_pred cCCCceEecchhHHHHhccCchHHH---HHHHHHhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc----cHHH
Confidence 44689999998875542 24555 34453 678888776 777777766655 445555555454333 6888
Q ss_pred HHHHHH
Q 033370 80 FISLCI 85 (121)
Q Consensus 80 F~~~~~ 85 (121)
|+.+..
T Consensus 81 f~e~ik 86 (220)
T COG4359 81 FVEWIK 86 (220)
T ss_pred HHHHHH
Confidence 888874
No 145
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.20 E-value=12 Score=26.97 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=43.4
Q ss_pred HHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 033370 25 VQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 83 (121)
Q Consensus 25 ~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~ 83 (121)
.-++|-.+.+-+|+|+-..-+..+. +..++...+-.+|+..|.+.+|.++-+||.-.
T Consensus 446 yde~fy~l~p~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSPVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccccCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4556666666678888766666553 45567788999999999999999999999643
No 146
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=68.66 E-value=7.7 Score=20.52 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=22.0
Q ss_pred HHHHHHhhHhhCCCCeecHHHHHHHHH
Q 033370 23 LKVQHAFSDLERGRGYLVPDNVYEALV 49 (121)
Q Consensus 23 ~~~~~~f~~~D~~~g~i~~~el~~~l~ 49 (121)
+.+...|+.+-++++.||..+|++.|.
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcC
Confidence 457788888866889999999999873
No 147
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=68.57 E-value=62 Score=26.23 Aligned_cols=109 Identities=13% Similarity=0.276 Sum_probs=67.4
Q ss_pred CCCCceeHHHHHHHHHHH---HHHHHHhhHhh-C-C-CCeecH-----HHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCC
Q 033370 5 DRNGTMSFEEFVELNKFL---LKVQHAFSDLE-R-G-RGYLVP-----DNVYEALVKIGFSLDSPAFYTVCESFDQNKNG 73 (121)
Q Consensus 5 ~~~g~i~~~ef~~~~~~~---~~~~~~f~~~D-~-~-~g~i~~-----~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 73 (121)
+..|+|....+.+.+..- ..+..+...+. + + +..|++ +.|..++..+. +..+++.+|..+..++..
T Consensus 160 n~~grip~knI~k~F~~~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie~iF~ki~~~~kp 236 (1189)
T KOG1265|consen 160 NFEGRIPVKNIIKTFSADKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIEEIFRKISGKKKP 236 (1189)
T ss_pred cccccccHHHHHHHhhcCCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHHHHHHHhccCCCc
Confidence 445666666655555421 23444444444 3 2 244544 44566665543 446789999999878878
Q ss_pred cccHHHHHHHHHHH----------------HHHHHHhhhhCCCCC----ceEeeehhhhHHHhhc
Q 033370 74 RLRLDDFISLCIFL----------------QSARNLFNSFDTAKQ----GRITLDLNQFIFCTAN 118 (121)
Q Consensus 74 ~l~~~eF~~~~~~~----------------~~~~~~f~~~d~~~~----g~i~~~~~~~~~~~~~ 118 (121)
.++.++++.++-.- .++..+.++|..+.+ |.+ +-+-|+...+|
T Consensus 237 ylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqm--s~dgf~ryl~g 299 (1189)
T KOG1265|consen 237 YLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQM--STDGFVRYLMG 299 (1189)
T ss_pred cccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhcccc--chhhhHHHhhC
Confidence 99999999998321 456778888866554 555 55666666655
No 148
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=65.41 E-value=31 Score=21.66 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=38.5
Q ss_pred ecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 033370 39 LVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQ 102 (121)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~~~~ 102 (121)
|...+.+.-|+..|...+....+.++..+-.++.|.+ |..|.. ++.+.+.||++++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~~~-------iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNIQG-------IKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehHHH-------HHHHHHhcCCCCc
Confidence 4456777778888887777777777777766776643 444422 5777888887665
No 149
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=64.55 E-value=19 Score=18.73 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=31.3
Q ss_pred HhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC
Q 033370 31 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNK 71 (121)
Q Consensus 31 ~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 71 (121)
.+...++.++..+++..+...|..++.+.+..-++.++.++
T Consensus 6 ~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 6 ILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 33445578888999999988888888888888888876443
No 150
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=62.50 E-value=25 Score=19.48 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=38.1
Q ss_pred CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 34 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 34 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+.+-.++..+|..+|...-......+...+=..+|...+++|+-=||-.+..-.
T Consensus 18 g~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 18 GKRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp TT-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CCCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 455789999999999886333334555667777899999999998887775433
No 151
>PLN02228 Phosphoinositide phospholipase C
Probab=60.32 E-value=62 Score=24.65 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH--------HHHHHHhhhhCCCC----CceEeeehhhhHHHhhc
Q 033370 54 SLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL--------QSARNLFNSFDTAK----QGRITLDLNQFIFCTAN 118 (121)
Q Consensus 54 ~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~--------~~~~~~f~~~d~~~----~g~i~~~~~~~~~~~~~ 118 (121)
..++.++..+|..+.. ++.++.++|..++... ..+..++..+.... .|.+ +.+.|...+++
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLV--HLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCcc--CHHHHHHHhcC
Confidence 3467889999999863 3579999999988654 33567777775432 2434 66667666554
No 152
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=60.13 E-value=38 Score=20.85 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhHhhC-CCCeecHHHHHHHHHHc
Q 033370 15 FVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKI 51 (121)
Q Consensus 15 f~~~~~~~~~~~~~f~~~D~-~~g~i~~~el~~~l~~~ 51 (121)
|......+..+.......|. +.+++|.+|++.++..+
T Consensus 61 W~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 61 WHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 33444455667777777785 45669999999999875
No 153
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=59.55 E-value=15 Score=16.15 Aligned_cols=19 Identities=5% Similarity=0.370 Sum_probs=14.0
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 033370 72 NGRLRLDDFISLCIFLQSA 90 (121)
Q Consensus 72 ~~~l~~~eF~~~~~~~~~~ 90 (121)
.|.|++++++.+..++...
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 4678888888887776544
No 154
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=57.31 E-value=24 Score=20.76 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCeecHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-------HHHHHHHhhhhCCCCCceE
Q 033370 35 GRGYLVPDNVYEALVKI--GFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF-------LQSARNLFNSFDTAKQGRI 105 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~-------~~~~~~~f~~~d~~~~g~i 105 (121)
-+|.++..|...+...+ ...+++.....+...+........++.+++..+.. ..-+..++...- .||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~--ADG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAY--ADGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCT--CTTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHh--cCCCC
Confidence 46889988877666654 22334445555555554333335777888766633 122445555544 35777
Q ss_pred eeehhhhHHHhh
Q 033370 106 TLDLNQFIFCTA 117 (121)
Q Consensus 106 ~~~~~~~~~~~~ 117 (121)
+..+.+++....
T Consensus 114 ~~~E~~~l~~ia 125 (140)
T PF05099_consen 114 SPEEQEFLRRIA 125 (140)
T ss_dssp SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 778877776543
No 155
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=52.36 E-value=18 Score=19.80 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHHH--HHHHHHhhhhCCCCCceEeeehhhhHHHhhc
Q 033370 73 GRLRLDDFISLCIFL--QSARNLFNSFDTAKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 73 ~~l~~~eF~~~~~~~--~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 118 (121)
..++|.+.+.....+ .....+|..-|.+|+ .|++-.++-|.++++
T Consensus 21 ~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gD-RITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEATTTAFEYEDEDGD-RITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhcccccccceeeccccCC-eeEecchHHHHHHHH
Confidence 457888877776554 224567777776554 467777777776664
No 156
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.64 E-value=35 Score=26.25 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCceeHHHHHHHHH--HHHHHHHHhhHhhCCCCeecHHHHHHHHHHcC--------CCCCHHHHHHHHHHhCCCCCCccc
Q 033370 7 NGTMSFEEFVELNK--FLLKVQHAFSDLERGRGYLVPDNVYEALVKIG--------FSLDSPAFYTVCESFDQNKNGRLR 76 (121)
Q Consensus 7 ~g~i~~~ef~~~~~--~~~~~~~~f~~~D~~~g~i~~~el~~~l~~~~--------~~~~~~~~~~~~~~~d~~~~~~l~ 76 (121)
++ ++++||. ... .-.+++..|..+|..+|.++.+++...+...- .....+....++++.+.+..+.+.
T Consensus 2 ~~-~~~~~~~-~~~~~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCSYDDKLQTFFDMYDKGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYIT 79 (646)
T ss_pred CC-cchhhhc-ccCCChhHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceee
Confidence 46 8888888 332 34678888999998889999999888777632 112334456667777777777888
Q ss_pred HHHHHHHHH
Q 033370 77 LDDFISLCI 85 (121)
Q Consensus 77 ~~eF~~~~~ 85 (121)
.+++..++.
T Consensus 80 ~~~~~~ll~ 88 (646)
T KOG0039|consen 80 NEDLEILLL 88 (646)
T ss_pred ecchhHHHH
Confidence 777766664
No 157
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=50.05 E-value=51 Score=19.25 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=36.1
Q ss_pred cccCCCCceeHHHHHHHHH-HHHHHHHHhhHhhCCCCeecHHHHHHHHHHc---CCCCCHHHHHHHHHHhCCCCCCcccH
Q 033370 2 YDFDRNGTMSFEEFVELNK-FLLKVQHAFSDLERGRGYLVPDNVYEALVKI---GFSLDSPAFYTVCESFDQNKNGRLRL 77 (121)
Q Consensus 2 ~d~~~~g~i~~~ef~~~~~-~~~~~~~~f~~~D~~~g~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~l~~ 77 (121)
||++...++.|.+.-.-++ .++.+-..|-. .-.++.++|..++... ........++.++. ..+|
T Consensus 36 F~~~eEnkley~~i~~ey~~lvE~~le~~l~----~~g~s~e~f~~~~~~~~~~~~~~~~~i~e~Lla--------~~DF 103 (121)
T PF11527_consen 36 FDDEEENKLEYTEIHQEYKELVEKLLEEFLE----ELGISMEEFEEACLSEESQKDEIAGEIFEQLLA--------ADDF 103 (121)
T ss_dssp T-SSSSCSTTHHHHHHHHHHHHHHHHHHHHH----STTSSHHCHHHHH---TCCCCCSSCCCHHHHCG--------GC-H
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHhhcccchhhhHHHHHHHHH--------HccH
Confidence 5555556666655433333 33333333332 3567778888887221 11122222333222 2468
Q ss_pred HHHHHHHHHHH
Q 033370 78 DDFISLCIFLQ 88 (121)
Q Consensus 78 ~eF~~~~~~~~ 88 (121)
..|..+|...+
T Consensus 104 ~~Fk~mM~~~n 114 (121)
T PF11527_consen 104 EAFKEMMVQYN 114 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 158
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=49.77 E-value=45 Score=18.54 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=28.2
Q ss_pred CCeecHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 36 RGYLVPDNVYEALVKIG--FSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 36 ~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
+|.++..|...+-..+. +.+++.....+.+.+........++.+|...+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47777777555444322 244556666666665444444466777766654
No 159
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=46.45 E-value=59 Score=18.96 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 68 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 68 (121)
...|-+.. .++...+..+++.+|...|.....+.++.++....
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45666777 67788899999999999999999999999999885
No 160
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.17 E-value=22 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHhhHhhC-CCCeecHHHHHHHHHHcCCCCCHHH-HHHHHHHhCCCCCCcccHHHHHHH
Q 033370 23 LKVQHAFSDLER-GRGYLVPDNVYEALVKIGFSLDSPA-FYTVCESFDQNKNGRLRLDDFISL 83 (121)
Q Consensus 23 ~~~~~~f~~~D~-~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~eF~~~ 83 (121)
+.+++.|+.+|+ +.|.|+.+-+...+.......++.. +..+-...++.+-|.|-.++|..-
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 568999999995 8889999999999888775544433 333344456666666666555443
No 161
>PLN02222 phosphoinositide phospholipase C 2
Probab=44.69 E-value=1.2e+02 Score=23.30 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH--------HHHHHHhhhhCC-CCCceEeeehhhhHHHhhc
Q 033370 55 LDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL--------QSARNLFNSFDT-AKQGRITLDLNQFIFCTAN 118 (121)
Q Consensus 55 ~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~--------~~~~~~f~~~d~-~~~g~i~~~~~~~~~~~~~ 118 (121)
..+.++..+|..+.. ++.++.++|..++... .....+++++.. ...+.+ +.+.|...+++
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGL--HLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCc--CHHHHHHHhcC
Confidence 456689999999863 4689999999988654 234556666532 123334 66667666654
No 162
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=43.09 E-value=51 Score=19.09 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=34.3
Q ss_pred CcccCCCCceeHHHHHHHHHHHHHHHHHhhHhhC-CCCeecHHHHHHHHHHc---CC-CCCHHHHHHHHHHhC
Q 033370 1 MYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKI---GF-SLDSPAFYTVCESFD 68 (121)
Q Consensus 1 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~-~~g~i~~~el~~~l~~~---~~-~~~~~~~~~~~~~~d 68 (121)
++|++.+..|+.++...+... -.-|...|. ...-||..-+.+.+... |. .++...+..+++.++
T Consensus 11 LYDT~tS~YITLedi~~lV~~----g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVRE----GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHC----CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 356666667777766665553 234555563 33455655555555443 11 244555555555554
No 163
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=42.89 E-value=62 Score=18.20 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCC
Q 033370 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDT 99 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~ 99 (121)
++|.+|.++...+-. .+-..+.+..++.... ..|.-.|+.|+..+...+++..-....+.
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e~~~l~~~l~~~~~ 91 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEEFPWVRDKLLKLRE 91 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888887776653 3344567788888874 55667899999999877777666555443
No 164
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=41.59 E-value=25 Score=15.32 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=12.2
Q ss_pred HHHhhhhCCCCCceEeee
Q 033370 91 RNLFNSFDTAKQGRITLD 108 (121)
Q Consensus 91 ~~~f~~~d~~~~g~i~~~ 108 (121)
+.+.++-|.|++-.|+++
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 345666788888777664
No 165
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=41.24 E-value=56 Score=17.18 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 033370 42 DNVYEALVKIGFSLDSPAFYTVCES 66 (121)
Q Consensus 42 ~el~~~l~~~~~~~~~~~~~~~~~~ 66 (121)
+++..++...+.++++.++..+++.
T Consensus 17 ~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 17 DDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHCC
Confidence 3444444444444444444444444
No 166
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=40.97 E-value=60 Score=17.50 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q 033370 40 VPDNVYEALVKIGFSLDSPAFYTVCESFDQN-KNGRLRLDDFISLC 84 (121)
Q Consensus 40 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~-~~~~l~~~eF~~~~ 84 (121)
...++..+| .|.+.+.+.+...+...+.. .-+.++-+|++.++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 477888888 46777888888888887433 33578888888764
No 167
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=40.81 E-value=52 Score=16.76 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=23.8
Q ss_pred CCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 36 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 36 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
+..+|.+|+...+..++..++...+..+|...
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 35678888888888888777777776666655
No 168
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=39.64 E-value=79 Score=18.50 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q 033370 27 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82 (121)
Q Consensus 27 ~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~ 82 (121)
..|-..- .++..+|..+++.+|...|.......+..+++.+.. .+.+|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3455555 577789999999999999999999999988888851 45565543
No 169
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=39.39 E-value=94 Score=19.29 Aligned_cols=14 Identities=0% Similarity=-0.000 Sum_probs=7.3
Q ss_pred ccHHHHHHHHHHHH
Q 033370 75 LRLDDFISLCIFLQ 88 (121)
Q Consensus 75 l~~~eF~~~~~~~~ 88 (121)
.+-++|-..|.+..
T Consensus 149 ~dtE~Ye~vwkKmP 162 (175)
T PF04876_consen 149 SDTEHYEKVWKKMP 162 (175)
T ss_pred CchHHHHHHHHHhh
Confidence 34555655655543
No 170
>PRK00523 hypothetical protein; Provisional
Probab=39.33 E-value=63 Score=17.28 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=34.4
Q ss_pred HHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 25 VQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 25 ~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
.+..|+.+=..+..|+.+-++......|..+++..++.+.+..
T Consensus 26 ark~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 26 SKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3455554445678899999999999999999999998888776
No 171
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.52 E-value=96 Score=22.25 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=5.1
Q ss_pred cccHHHHHHHH
Q 033370 74 RLRLDDFISLC 84 (121)
Q Consensus 74 ~l~~~eF~~~~ 84 (121)
++-|.||+..|
T Consensus 42 RL~FNeFi~tm 52 (379)
T PF11593_consen 42 RLQFNEFIQTM 52 (379)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 172
>PHA02986 hypothetical protein; Provisional
Probab=37.72 E-value=91 Score=18.64 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred CceeHHHHHHHHHHHHHHHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q 033370 8 GTMSFEEFVELNKFLLKVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 68 (121)
Q Consensus 8 g~i~~~ef~~~~~~~~~~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 68 (121)
..|++.-|..+.+.. ...++...+.++|++..+-.....+.++.+..+...+|
T Consensus 25 nei~~k~FsNLCkef--------i~~~k~~~~ik~~IK~ill~iP~sm~~~~W~PIanlcD 77 (141)
T PHA02986 25 NEISFKYFSNLCKEF--------ISNKKKTTLIKEEIKKILLEIPDSMISQVWYPIANLCD 77 (141)
T ss_pred chhhHHHHHHHHHHH--------HhcCCCchhHHHHHHHHHHhCChhHHHHHHHHHHhhcc
Confidence 345555555555421 11135567778899999988877777888777777776
No 173
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=37.50 E-value=13 Score=20.59 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHH-HHHH-HHhhhhCCCCCce-EeeehhhhHHHhhcc
Q 033370 64 CESFDQNKNGRLRLDDFISLCIFL-QSAR-NLFNSFDTAKQGR-ITLDLNQFIFCTANC 119 (121)
Q Consensus 64 ~~~~d~~~~~~l~~~eF~~~~~~~-~~~~-~~f~~~d~~~~g~-i~~~~~~~~~~~~~~ 119 (121)
++++..+..-.++|++|...+..+ ..+. .-|...=+|.+|. |+++-++-+..++++
T Consensus 16 IRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~ 74 (87)
T cd06402 16 IRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGS 74 (87)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHc
Confidence 345555566668888888886654 2221 1222221233443 678887777777665
No 174
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=36.80 E-value=77 Score=22.59 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=40.9
Q ss_pred HHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 26 QHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 26 ~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
......+| .+.|+++..-.+-++..+.-..-.+..+.+|.... ++.|.+.+..|..++..
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 33445667 47788887777777766544444567788888885 67788887777777643
No 175
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=36.71 E-value=1.9e+02 Score=23.22 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=54.5
Q ss_pred HHHHHHhhHhh-C-CCCeecHHHHHHHHHHc--------CC----CCC-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 23 LKVQHAFSDLE-R-GRGYLVPDNVYEALVKI--------GF----SLD-SPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 23 ~~~~~~f~~~D-~-~~g~i~~~el~~~l~~~--------~~----~~~-~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
..+.++|.+.+ . +...+.+.+...+|... |. ++- +.-+..+++.||+..+|.|..-+|...++.+
T Consensus 420 tl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~l 499 (966)
T KOG4286|consen 420 SLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISL 499 (966)
T ss_pred HHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHH
Confidence 45788888888 5 56788888877776653 21 111 2235778889999999998888886666544
Q ss_pred ------HHHHHHhhhhCCCC
Q 033370 88 ------QSARNLFNSFDTAK 101 (121)
Q Consensus 88 ------~~~~~~f~~~d~~~ 101 (121)
.++.-+|+..-.++
T Consensus 500 ck~~leek~~ylF~~vA~~~ 519 (966)
T KOG4286|consen 500 CKAHLEDKYRYLFKQVASST 519 (966)
T ss_pred hcchhHHHHHHHHHHHcCch
Confidence 55677888776443
No 176
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=36.22 E-value=13 Score=20.33 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHHH---HHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 64 CESFDQNKNGRLRLDDFISLCIFLQSAR---NLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 64 ~~~~d~~~~~~l~~~eF~~~~~~~~~~~---~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
++++..+.+...+|+||..++..+-++. -+....|.+ ..-+.++-++-+..++
T Consensus 11 fRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~-gDLLPInNDdNf~kAl 66 (80)
T cd06403 11 FRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPH-GDLLPINNDDNFLKAL 66 (80)
T ss_pred EEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCC-CCEecccCcHHHHHHH
Confidence 3455555555678999988877654333 122333542 2235666644444333
No 177
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=35.07 E-value=72 Score=16.66 Aligned_cols=42 Identities=5% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 26 QHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 26 ~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
+..|+.+=..+..|+.+-++......|..+++..++.+.+..
T Consensus 19 r~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 334443334567899999999999999999999888887765
No 178
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.01 E-value=53 Score=26.27 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=48.2
Q ss_pred HHHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 033370 24 KVQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFL 87 (121)
Q Consensus 24 ~~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~ 87 (121)
+...+|....++.|.++-...+-++.. ..++.+.+..++...|.+.+|.++..||...|...
T Consensus 130 ky~q~f~s~~p~~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 130 KYDQIFRSLSPSNGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred HHHHHHhccCCCCCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 345556666667888888888877754 44566778889999999999999999998887654
No 179
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.59 E-value=77 Score=16.87 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 26 QHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 26 ~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
++.++.+=.++..|+.+-++..+...|..+++..++.+.+..
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444554445678899999999999999999998888888765
No 180
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=33.67 E-value=1.4e+02 Score=23.39 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCC
Q 033370 41 PDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDT 99 (121)
Q Consensus 41 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~ 99 (121)
.+-|..+-..+.-..+.-.+..+|+....+.+|+|+|.-|-.++.-+.+..+.-+.+..
T Consensus 137 ~eAF~rIAPavp~vADvit~hnlF~aLT~stg~RL~f~~ydkYL~eLdk~ik~~k~~~~ 195 (683)
T PF04842_consen 137 EEAFVRIAPAVPGVADVITVHNLFEALTASTGGRLHFPIYDKYLKELDKVIKSMKSQST 195 (683)
T ss_pred HHHHHHhcccCcccccchhHHHHHHHHhcCCCCceeeHHHHHHHHHHHHHHHHHHhccC
Confidence 33344433333333455668899999987778889999998888777666555555543
No 181
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=33.45 E-value=74 Score=17.33 Aligned_cols=16 Identities=31% Similarity=0.550 Sum_probs=12.8
Q ss_pred CCceeHHHHHHHHHHH
Q 033370 7 NGTMSFEEFVELNKFL 22 (121)
Q Consensus 7 ~g~i~~~ef~~~~~~~ 22 (121)
.++|+++||..+-..-
T Consensus 33 PmSIS~eeY~~LH~~f 48 (81)
T PF10891_consen 33 PMSISFEEYIRLHIKF 48 (81)
T ss_pred ccEeeHHHHHHHHHHH
Confidence 5899999999876644
No 182
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=33.23 E-value=1.6e+02 Score=23.97 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=48.9
Q ss_pred CCCCceeHHHHHHHHHHHH-----HHHHHhh------HhhC-CCCeecHHHHHHHHHHcCCCC---CHHHHHHHHHHhC-
Q 033370 5 DRNGTMSFEEFVELNKFLL-----KVQHAFS------DLER-GRGYLVPDNVYEALVKIGFSL---DSPAFYTVCESFD- 68 (121)
Q Consensus 5 ~~~g~i~~~ef~~~~~~~~-----~~~~~f~------~~D~-~~g~i~~~el~~~l~~~~~~~---~~~~~~~~~~~~d- 68 (121)
-.++.++|++|..++..+- ..-..|. .-+. ....+++.+|+++|....... +...++.+.+.+-
T Consensus 192 ~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~ 271 (1267)
T KOG1264|consen 192 ARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFID 271 (1267)
T ss_pred hccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHh
Confidence 3578999999999888541 1111121 1111 235889999999997643321 1123444444442
Q ss_pred ----CCCCCcccHHHHHHHHHH
Q 033370 69 ----QNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 69 ----~~~~~~l~~~eF~~~~~~ 86 (121)
.-....+.++||+.++-.
T Consensus 272 D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 272 DTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hhhhhccCcceeHHHHHHHHhh
Confidence 224467999999999844
No 183
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.52 E-value=87 Score=16.86 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Q 033370 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQN 70 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 70 (121)
..|.||..++..+|.. ..++++.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHC
Confidence 5689999999999863 446778888888877533
No 184
>PRK01844 hypothetical protein; Provisional
Probab=32.26 E-value=87 Score=16.77 Aligned_cols=43 Identities=2% Similarity=0.037 Sum_probs=34.4
Q ss_pred HHHHhhHhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 25 VQHAFSDLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 25 ~~~~f~~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
.++.|+.+=..+..|+.+-++......|..+++..++.+.+..
T Consensus 25 ark~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 25 ARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3555555445677899999999999999999999998888776
No 185
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.05 E-value=1.1e+02 Score=17.79 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHH
Q 033370 27 HAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFIS 82 (121)
Q Consensus 27 ~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~ 82 (121)
..|-.+- .++..+|.++++.+|...|....+.....+++.+.. .+.++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3455556 577789999999999999999998888888888741 35555544
No 186
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.76 E-value=56 Score=24.03 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 57 SPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 57 ~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
-+.+..+-+.+|.|.+|.|+.+|=-.++.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHH
Confidence 34455555556666666666665444443
No 187
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=31.68 E-value=84 Score=16.41 Aligned_cols=20 Identities=5% Similarity=0.232 Sum_probs=14.0
Q ss_pred Hhh-CCCCeecHHHHHHHHHH
Q 033370 31 DLE-RGRGYLVPDNVYEALVK 50 (121)
Q Consensus 31 ~~D-~~~g~i~~~el~~~l~~ 50 (121)
.|| ..+..|+.++++++++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 566 46677777777777765
No 188
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=30.48 E-value=2e+02 Score=20.28 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.0
Q ss_pred ccHHHHHH
Q 033370 75 LRLDDFIS 82 (121)
Q Consensus 75 l~~~eF~~ 82 (121)
|+.+|=+.
T Consensus 303 itReeal~ 310 (343)
T TIGR03573 303 ITREEAIE 310 (343)
T ss_pred CCHHHHHH
Confidence 33433333
No 189
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=30.29 E-value=1.3e+02 Score=18.13 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCCeecHHHHHHHHHHcC---------CCCCHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 033370 35 GRGYLVPDNVYEALVKIG---------FSLDSPAFYTVCESFDQNKNG-RLRLDDFISL 83 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~~-~l~~~eF~~~ 83 (121)
|+..||.+||.+++..-. ..++++.++.+.+.+.....+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567888888888887632 126778888888777655444 3777766554
No 190
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.26 E-value=1.1e+02 Score=19.65 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCC
Q 033370 19 NKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFS 54 (121)
Q Consensus 19 ~~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~ 54 (121)
+++-+..+++|..|| .+--..+-+++..++...|..
T Consensus 51 L~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 51 LKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred HHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 344467899999999 577899999999999887643
No 191
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.19 E-value=54 Score=18.16 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=32.2
Q ss_pred CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
+.|.++.++...+-. .+...+....++.... ..|.-.|..|+..+..
T Consensus 31 ~~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 31 QKDILTDSMAESIMA---KPTSFSQNVALLNLLP--KRGPRAFSAFCEALRE 77 (90)
T ss_pred HcCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--HhChhHHHHHHHHHHh
Confidence 568888888766653 3334566777777774 4456688999888854
No 192
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=29.04 E-value=1.1e+02 Score=16.81 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=29.4
Q ss_pred CCeecHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 36 RGYLVPDNVYEALVK-IGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 36 ~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
.|.-+..-=..+|.. .|-.++.+..+.+-+.++......|+|+|.+.+..
T Consensus 26 ~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 26 PDHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred CCCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344343333444444 34456666666666666555666699999887643
No 193
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.89 E-value=63 Score=14.15 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=12.6
Q ss_pred eecHHHHHHHHHHcCCC
Q 033370 38 YLVPDNVYEALVKIGFS 54 (121)
Q Consensus 38 ~i~~~el~~~l~~~~~~ 54 (121)
.++..+++..++..|.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46677888888887755
No 194
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=28.77 E-value=1.6e+02 Score=23.52 Aligned_cols=61 Identities=3% Similarity=-0.044 Sum_probs=46.3
Q ss_pred HHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 033370 24 KVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCI 85 (121)
Q Consensus 24 ~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~ 85 (121)
.+...++.|| ..+|.|..-+|+-.+-.+......+.+..+|+....++. .++-..|..++.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s-q~~q~~l~lLL~ 532 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS-QCDQRRLGLLLH 532 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh-hHHHHHHHHHHH
Confidence 4577789999 579999999999988888777778888899999875543 344555655553
No 195
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.26 E-value=64 Score=14.25 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=11.0
Q ss_pred eecHHHHHHHHHHcCCC
Q 033370 38 YLVPDNVYEALVKIGFS 54 (121)
Q Consensus 38 ~i~~~el~~~l~~~~~~ 54 (121)
.++..|++..++..|.+
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 35667777777777654
No 196
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=27.81 E-value=1.4e+02 Score=17.75 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=21.7
Q ss_pred HHHHHHhhHhh-C-C-CCeecHHHHHHHHHHc
Q 033370 23 LKVQHAFSDLE-R-G-RGYLVPDNVYEALVKI 51 (121)
Q Consensus 23 ~~~~~~f~~~D-~-~-~g~i~~~el~~~l~~~ 51 (121)
..+..+|+... . . +..++..++..++..+
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i 72 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSI 72 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 45678888777 5 3 6789999998888764
No 197
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=27.43 E-value=1.8e+02 Score=19.02 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHHH------------------HHHHHHhhhhCCCCCceEeeeh
Q 033370 72 NGRLRLDDFISLCIFL------------------QSARNLFNSFDTAKQGRITLDL 109 (121)
Q Consensus 72 ~~~l~~~eF~~~~~~~------------------~~~~~~f~~~d~~~~g~i~~~~ 109 (121)
.|.++|+.++.-|.+. +++...-+.||++..|-|.+..
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I~~ 230 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKIGK 230 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceeeec
Confidence 3679999999888654 3456667889999999886644
No 198
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.23 E-value=3e+02 Score=21.44 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH--------------HHHHhhhhCCCC
Q 033370 36 RGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQS--------------ARNLFNSFDTAK 101 (121)
Q Consensus 36 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~--------------~~~~f~~~d~~~ 101 (121)
++ ++++|+. ....-.++.++.++..+|. ++|.++-+++..++...-. ...+++..+.+.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 45 7888888 2222235568889999985 8899999888777744311 345666667777
Q ss_pred CceEeeehhhhH
Q 033370 102 QGRITLDLNQFI 113 (121)
Q Consensus 102 ~g~i~~~~~~~~ 113 (121)
.|++...-..++
T Consensus 75 ~~y~~~~~~~~l 86 (646)
T KOG0039|consen 75 KGYITNEDLEIL 86 (646)
T ss_pred cceeeecchhHH
Confidence 777654444443
No 199
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=77 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=23.0
Q ss_pred HHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 88 QSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 88 ~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
+.++++|+.+|+.+.|+|+.+-.+-+....
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 558999999999999999877655544433
No 200
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=26.74 E-value=85 Score=14.89 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q 033370 40 VPDNVYEALVKIGFSLDSPAF 60 (121)
Q Consensus 40 ~~~el~~~l~~~~~~~~~~~~ 60 (121)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 668888888888888876654
No 201
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=26.73 E-value=1e+02 Score=15.77 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=18.2
Q ss_pred eecHHHHHHHHHHcCCCCCHHHHHH
Q 033370 38 YLVPDNVYEALVKIGFSLDSPAFYT 62 (121)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~ 62 (121)
.|+.++|..+|+.....++.+.++.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 5788888888888777777766553
No 202
>PF15326 TEX15: Testis expressed sequence 15
Probab=26.45 E-value=2e+02 Score=19.13 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCCCCCceEeeehhhhHHHhh
Q 033370 56 DSPAFYTVCESFDQNKNGRLRLDDFISLCIFLQSARNLFNSFDTAKQGRITLDLNQFIFCTA 117 (121)
Q Consensus 56 ~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 117 (121)
.-..+..+++++|.-.+-..--++-..|-.+++.+.+.|++...+.-..|-++++..+.+..
T Consensus 76 ~I~~lseIL~qAde~asL~~LQelt~~C~~~L~~f~k~Fe~~Qe~s~d~IfIs~e~vle~~~ 137 (233)
T PF15326_consen 76 DICCLSEILDQADEAASLKKLQELTLRCQNHLPIFKKYFERLQECSFDQIFISRELVLEQNL 137 (233)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeeHHHHHHHhc
Confidence 33456677777764344344445556666777888899988887777778788877666544
No 203
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.05 E-value=99 Score=16.92 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 033370 35 GRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLCIF 86 (121)
Q Consensus 35 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~~~ 86 (121)
++|.++..+...+.. .+-..+..+.++.... ..|.=.|..|+..+..
T Consensus 27 ~~~Vlt~~~~e~I~~---~~tr~~q~~~LLd~L~--~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 27 SRGVFTPDMIEEIQA---AGSRRDQARQLLIDLE--TRGKQAFPAFLSALRE 73 (84)
T ss_pred hcCCCCHHHHHHHHc---CCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh
Confidence 567888877776653 2233556777777774 4455678888887754
No 204
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=25.83 E-value=67 Score=17.31 Aligned_cols=18 Identities=11% Similarity=0.315 Sum_probs=15.2
Q ss_pred cCCCCceeHHHHHHHHHH
Q 033370 4 FDRNGTMSFEEFVELNKF 21 (121)
Q Consensus 4 ~~~~g~i~~~ef~~~~~~ 21 (121)
.|..|.|+++.|++.|..
T Consensus 13 ~n~~G~iTl~gfLa~W~l 30 (76)
T PF08355_consen 13 TNEKGWITLQGFLAQWSL 30 (76)
T ss_pred EcCCCcCcHHHHHHHHHH
Confidence 467899999999998874
No 205
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=25.81 E-value=1.4e+02 Score=17.03 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.6
Q ss_pred eHHHHHHHHHHHHHHHHHhhHhh
Q 033370 11 SFEEFVELNKFLLKVQHAFSDLE 33 (121)
Q Consensus 11 ~~~ef~~~~~~~~~~~~~f~~~D 33 (121)
+|.|+..+...+..+...|..++
T Consensus 20 ~y~EYk~L~~~v~~v~~~f~~L~ 42 (101)
T PF07303_consen 20 DYDEYKELHAEVDAVSRRFQELD 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666
No 206
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=25.11 E-value=1.5e+02 Score=17.31 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.3
Q ss_pred HhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q 033370 28 AFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 68 (121)
Q Consensus 28 ~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 68 (121)
.|-..- .++..+|.++++.+|...|..+....+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 444445 56778999999999999999988888888888874
No 207
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=24.77 E-value=2e+02 Score=18.40 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q 033370 34 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFD 68 (121)
Q Consensus 34 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 68 (121)
+.+|.++.+++...+..-+..++.+.+..++...+
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 46789999998888887666677777777776643
No 208
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=24.09 E-value=55 Score=25.51 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=11.8
Q ss_pred CCcccHHHHHHHHHH
Q 033370 72 NGRLRLDDFISLCIF 86 (121)
Q Consensus 72 ~~~l~~~eF~~~~~~ 86 (121)
-+.++.+|-+.++..
T Consensus 519 ~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 519 FGVVTVDELVALLAL 533 (975)
T ss_pred cCeeEHHHHHHHHHH
Confidence 388899998888764
No 209
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=23.59 E-value=1.4e+02 Score=16.31 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 033370 43 NVYEALVKIGFSLDSPAFY 61 (121)
Q Consensus 43 el~~~l~~~~~~~~~~~~~ 61 (121)
|+-.+|+.+|..+++++..
T Consensus 21 EIL~ALrkLge~Ls~eE~~ 39 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEA 39 (78)
T ss_dssp HHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 5677888888888877654
No 210
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=23.49 E-value=1e+02 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=32.6
Q ss_pred ceeHHHHHHHHHHHHHHHHHhhH---hhCCCCeecHHHHHHHHHHcCCC
Q 033370 9 TMSFEEFVELNKFLLKVQHAFSD---LERGRGYLVPDNVYEALVKIGFS 54 (121)
Q Consensus 9 ~i~~~ef~~~~~~~~~~~~~f~~---~D~~~g~i~~~el~~~l~~~~~~ 54 (121)
..+|+++......++...+.... .++.++.++..++...|+.+|.+
T Consensus 18 ~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p 66 (496)
T KOG2525|consen 18 SKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNP 66 (496)
T ss_pred chhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCCh
Confidence 34477777777766555554444 33457889999999999999877
No 211
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=23.40 E-value=1.3e+02 Score=19.42 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHH
Q 033370 18 LNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYT 62 (121)
Q Consensus 18 ~~~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 62 (121)
++++-+.++.+|..|| ..--..+.+++..++...+.--+...++.
T Consensus 49 IL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~A 94 (187)
T PRK10353 49 VLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQA 94 (187)
T ss_pred HHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHH
Confidence 3344467899999999 46678888999988876554333333433
No 212
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.26 E-value=1.7e+02 Score=18.65 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHH
Q 033370 18 LNKFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVC 64 (121)
Q Consensus 18 ~~~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 64 (121)
++++-+..+++|..|| ..-...+-+++..++...+.--+...++.++
T Consensus 48 IL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 48 VLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred HHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 3344467899999999 4667888899999887765443444444333
No 213
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=23.13 E-value=89 Score=13.94 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=9.8
Q ss_pred eHHHHHHHHHHHHHHHH
Q 033370 11 SFEEFVELNKFLLKVQH 27 (121)
Q Consensus 11 ~~~ef~~~~~~~~~~~~ 27 (121)
+.+||.+....++.++.
T Consensus 6 t~eEF~dp~~yi~~i~~ 22 (34)
T PF02375_consen 6 TMEEFKDPIKYISSIEP 22 (34)
T ss_dssp -HHHHS-HHHHHHHHHH
T ss_pred CHHHHhCHHHHHHHHHH
Confidence 56777777776665544
No 214
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.49 E-value=1.1e+02 Score=14.62 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCCeec-HHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 35 GRGYLV-PDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 35 ~~g~i~-~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
..|.|+ ..++-+.+...|+.++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346665 445555556667777887777776643
No 215
>PRK03968 DNA primase large subunit; Validated
Probab=22.31 E-value=3.1e+02 Score=19.93 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=24.6
Q ss_pred CeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 033370 37 GYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISLC 84 (121)
Q Consensus 37 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~~ 84 (121)
.-++.++.....+..+..+.+++...+...+ .|.+.+|+.++
T Consensus 120 ~e~p~~d~~~l~~~~~~el~~e~~~~~~~~y------~i~~~df~~l~ 161 (399)
T PRK03968 120 IEIPEKDRKILERVRGRELPPEELEDLLPEY------KIKWKDLLDLI 161 (399)
T ss_pred ccccchhhhhhhhhcccccCHHHHHHHhhhc------cccHHHHHHhc
Confidence 4455555566666666666666666555543 36666666644
No 216
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=22.22 E-value=2e+02 Score=23.37 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHH-----------HHHHHHhhhhCCCCCceEee
Q 033370 58 PAFYTVCESFDQNKNGRLRLDDFISLCIFL-----------QSARNLFNSFDTAKQGRITL 107 (121)
Q Consensus 58 ~~~~~~~~~~d~~~~~~l~~~eF~~~~~~~-----------~~~~~~f~~~d~~~~g~i~~ 107 (121)
.++..++..++....+.++.++|+.+++.+ ..+..+-...|...-|.+++
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~ 807 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQL 807 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeH
Confidence 346777888887777889999999999765 22334444445555566644
No 217
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.10 E-value=90 Score=13.55 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=7.5
Q ss_pred CeecHHHHHHHHH
Q 033370 37 GYLVPDNVYEALV 49 (121)
Q Consensus 37 g~i~~~el~~~l~ 49 (121)
-.|+++|++.+|.
T Consensus 15 ~Gls~eeir~FL~ 27 (30)
T PF08671_consen 15 SGLSKEEIREFLE 27 (30)
T ss_dssp TT--HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 3577777777765
No 218
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=21.91 E-value=2.3e+02 Score=18.09 Aligned_cols=34 Identities=26% Similarity=0.180 Sum_probs=23.7
Q ss_pred CCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 033370 34 RGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESF 67 (121)
Q Consensus 34 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 67 (121)
+.+|.++.+++...++.-+..++.+.+..+...-
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 4578888888888876545556777777666543
No 219
>COG5562 Phage envelope protein [General function prediction only]
Probab=21.69 E-value=86 Score=19.04 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCCCeecHHHHHHHHHHcCC
Q 033370 34 RGRGYLVPDNVYEALVKIGF 53 (121)
Q Consensus 34 ~~~g~i~~~el~~~l~~~~~ 53 (121)
..+|..+++|++..+..+|.
T Consensus 84 ~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 84 HQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HhcCCccHHHHHHHHHhCCe
Confidence 46899999999999999873
No 220
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.44 E-value=1.2e+02 Score=19.34 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhHhh-CCCCeecHHHHHHHHHHcCCCCCHHHHHHHH
Q 033370 20 KFLLKVQHAFSDLE-RGRGYLVPDNVYEALVKIGFSLDSPAFYTVC 64 (121)
Q Consensus 20 ~~~~~~~~~f~~~D-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 64 (121)
++-+.++.+|..|| ..-..++.+++..++...+.--+...++.++
T Consensus 46 ~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 46 KKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 33467899999999 4667888889988887655444444444433
No 221
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=20.70 E-value=1.5e+02 Score=15.52 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhC-CCCeecHHHHHHHHHHc----CCCCCHHHHHHHHHHh
Q 033370 14 EFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEALVKI----GFSLDSPAFYTVCESF 67 (121)
Q Consensus 14 ef~~~~~~~~~~~~~f~~~D~-~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~ 67 (121)
+...+-+.+..+..+....+. ..--+-..+++.++..+ |...+.+.+..+|..|
T Consensus 14 q~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 14 QRQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 334444456666777666663 33445556677777664 4555666777777654
No 222
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.63 E-value=1.9e+02 Score=16.67 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=35.4
Q ss_pred HhhCCCCeecHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 033370 31 DLERGRGYLVPDNVYEALVKIGFSLDSPAFYTVCESFDQNKNGRLRLDDFISL 83 (121)
Q Consensus 31 ~~D~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~eF~~~ 83 (121)
..+.+.. +|.+.+..+|...|.......+..+++.+. | .+.++.+.-
T Consensus 10 l~~~g~~-~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~ 56 (105)
T cd04411 10 LHKGGKE-LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISK 56 (105)
T ss_pred HHhcCCC-CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHH
Confidence 3443333 999999999999999999999998888874 1 456666543
Done!