Query 033371
Match_columns 120
No_of_seqs 120 out of 945
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 59.6 3.1 0.00011 26.1 1.0 26 33-58 31-57 (118)
2 1xrd_A LH-1, light-harvesting 44.1 30 0.001 19.1 3.3 30 47-76 7-42 (52)
3 2cmx_A ORF F-112, F112, hypoth 23.5 26 0.00088 22.2 0.8 26 33-58 31-57 (118)
4 1p58_D Envelope protein M; fla 19.0 1.5E+02 0.0053 17.3 3.9 35 7-42 27-61 (75)
5 1rh5_B Preprotein translocase 15.7 1.4E+02 0.0048 17.5 2.9 26 47-72 31-56 (74)
6 3mp7_B Preprotein translocase 14.6 1.6E+02 0.0056 16.5 2.9 26 47-72 27-52 (61)
7 2ksd_A Aerobic respiration con 13.9 19 0.00064 23.3 -1.5 68 7-75 6-76 (115)
8 1k3k_A Functional anti-apoptot 12.3 1.6E+02 0.0056 19.5 2.8 18 46-63 80-97 (158)
9 2kua_A BCL-2-like protein 10; 11.7 2.6E+02 0.0088 18.7 3.7 17 47-63 89-105 (170)
10 4aw6_A CAAX prenyl protease 1 11.1 5.8E+02 0.02 20.0 7.2 48 59-107 133-187 (482)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=59.61 E-value=3.1 Score=26.08 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=19.9
Q ss_pred hHHHHHHHHH-hcCCcchHHHHHHHHH
Q 033371 33 GCSDAIAQKI-SGVKKLQLKRLLLLML 58 (120)
Q Consensus 33 ~~gD~laQ~~-~~~~~~d~~R~~~~~~ 58 (120)
.+-|++||.= .-...+|.+|++++.+
T Consensus 31 sledilaqfeis~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 4679999984 3335799999999865
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=44.13 E-value=30 Score=19.13 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHhhhchhhhHhHH------HHHhh
Q 033371 47 KLQLKRLLLLMLFDFGYGVPFGHFL------NKFLD 76 (120)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~w------y~~L~ 76 (120)
-+|.+|++.-.....+..+-..|+- |++||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 3799998876666665677777765 66676
No 3
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=23.51 E-value=26 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=16.9
Q ss_pred hHHHHHHHHH-hcCCcchHHHHHHHHH
Q 033371 33 GCSDAIAQKI-SGVKKLQLKRLLLLML 58 (120)
Q Consensus 33 ~~gD~laQ~~-~~~~~~d~~R~~~~~~ 58 (120)
.+-|++||.= .....++..|++|+.+
T Consensus 31 t~eDIlaqfeIS~s~Ay~I~~~lk~iC 57 (118)
T 2cmx_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 3458888873 3334677778877754
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=19.03 E-value=1.5e+02 Score=17.34 Aligned_cols=35 Identities=11% Similarity=-0.039 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhHHHHHHHHH
Q 033371 7 EAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI 42 (120)
Q Consensus 7 ~l~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~laQ~~ 42 (120)
+=..+-++..-|||..+-++. .+.+.+|+...|++
T Consensus 27 ~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 334555777889999887777 78888888888875
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=15.69 E-value=1.4e+02 Score=17.48 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHhhhchhhhHhHHH
Q 033371 47 KLQLKRLLLLMLFDFGYGVPFGHFLN 72 (120)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~wy 72 (120)
.=++.+.++....|+++.|-+.+.-+
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999998888876654
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=14.58 E-value=1.6e+02 Score=16.46 Aligned_cols=26 Identities=12% Similarity=-0.044 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHhhhchhhhHhHHH
Q 033371 47 KLQLKRLLLLMLFDFGYGVPFGHFLN 72 (120)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~wy 72 (120)
.=++.+.++....|+++.|-+.+.-+
T Consensus 27 ~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 27 WATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988866544
No 7
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=13.94 E-value=19 Score=23.30 Aligned_cols=68 Identities=7% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhHHHHHHHHHhc---CCcchHHHHHHHHHHhhhchhhhHhHHHHHh
Q 033371 7 EAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISG---VKKLQLKRLLLLMLFDFGYGVPFGHFLNKFL 75 (120)
Q Consensus 7 ~l~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~laQ~~~~---~~~~d~~R~~~~~~~G~~~~gp~~~~wy~~L 75 (120)
...+.|-..+.|-=...=++....+..+-+++-|..-. ..+.+|.-..|-..+|. +.+|+.-|.+..+
T Consensus 6 ~~aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgl-i~aP~viYFls~v 76 (115)
T 2ksd_A 6 LLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGL-LITPWAVYFLSVV 76 (115)
T ss_dssp ---------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34455666666666666677778888888888898742 24455554555567777 4899999988776
No 8
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=12.32 E-value=1.6e+02 Score=19.55 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.2
Q ss_pred CcchHHHHHHHHHHhhhc
Q 033371 46 KKLQLKRLLLLMLFDFGY 63 (120)
Q Consensus 46 ~~~d~~R~~~~~~~G~~~ 63 (120)
..++|.|.+.+..+|...
T Consensus 80 G~iNWGRIVaLfaF~g~l 97 (158)
T 1k3k_A 80 GNMNWGRALAILTFGSFV 97 (158)
T ss_dssp CSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 459999999999998864
No 9
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=11.69 E-value=2.6e+02 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHhhhc
Q 033371 47 KLQLKRLLLLMLFDFGY 63 (120)
Q Consensus 47 ~~d~~R~~~~~~~G~~~ 63 (120)
.++|.|.+.+..+|...
T Consensus 89 ~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 89 DFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999998753
No 10
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=11.07 E-value=5.8e+02 Score=20.03 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=30.3
Q ss_pred HhhhchhhhHhHHHHH-hhhhcCCC--C----hHHHHHHHHHHHHhHHHHHHHHHH
Q 033371 59 FDFGYGVPFGHFLNKF-LDAIFKGR--D----NKSVAKKVLLEQLIFSPWINFLFM 107 (120)
Q Consensus 59 ~G~~~~gp~~~~wy~~-L~~~~~~~--~----~~~~~~Kvl~Dq~i~~P~~~~~f~ 107 (120)
++.++.=|+. ++-.+ +|+.++-+ + ....+|..++.+++..|+....+.
T Consensus 133 ~~~l~~LP~~-~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ 187 (482)
T 4aw6_A 133 FSALAGLPWS-LYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLY 187 (482)
T ss_dssp HHHHHHHHHH-HHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHH-HHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343334442 33343 77777653 2 478899999999999998655443
Done!