Query 033371
Match_columns 120
No_of_seqs 120 out of 945
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 21:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 73.1 0.57 4.1E-05 25.6 1.0 26 33-58 22-48 (70)
2 d2v9va1 a.4.5.35 (A:377-437) C 53.9 3.7 0.00027 21.4 1.9 22 36-57 5-27 (61)
3 d1xrda1 f.3.1.1 (A:1-52) Light 53.3 8.5 0.00062 20.0 3.3 30 47-76 7-42 (52)
4 d2g7la2 a.121.1.1 (A:87-230) P 23.3 34 0.0025 20.1 3.1 41 4-44 6-51 (144)
5 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 22.0 83 0.0061 19.2 5.4 27 35-62 70-96 (146)
6 d2g7ga2 a.121.1.1 (A:74-205) P 20.3 44 0.0032 19.2 3.1 40 4-43 6-50 (132)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 19.4 72 0.0052 17.4 4.1 29 82-110 32-60 (75)
8 d1z0xa2 a.121.1.1 (A:72-220) T 15.2 61 0.0045 19.2 3.0 26 5-30 7-32 (149)
9 d2vkva2 a.121.1.1 (A:68-205) T 14.5 61 0.0044 18.7 2.7 24 4-27 11-34 (138)
10 d1ku2a2 a.177.1.1 (A:93-272) S 13.0 37 0.0027 21.0 1.4 18 7-24 2-19 (180)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=73.09 E-value=0.57 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=19.7
Q ss_pred hHHHHHHHHH-hcCCcchHHHHHHHHH
Q 033371 33 GCSDAIAQKI-SGVKKLQLKRLLLLML 58 (120)
Q Consensus 33 ~~gD~laQ~~-~~~~~~d~~R~~~~~~ 58 (120)
.+-|++||.= .-...+|.+|++++.+
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 4679999984 3335799999999864
No 2
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=53.87 E-value=3.7 Score=21.39 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=16.6
Q ss_pred HHHHHHH-hcCCcchHHHHHHHH
Q 033371 36 DAIAQKI-SGVKKLQLKRLLLLM 57 (120)
Q Consensus 36 D~laQ~~-~~~~~~d~~R~~~~~ 57 (120)
.++||.+ +.++.+||+....-+
T Consensus 5 kilaqiiqehregldwqeaatra 27 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATRA 27 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHh
Confidence 5789999 567889998765443
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=53.35 E-value=8.5 Score=20.01 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHhhhchhhhHhHH------HHHhh
Q 033371 47 KLQLKRLLLLMLFDFGYGVPFGHFL------NKFLD 76 (120)
Q Consensus 47 ~~d~~R~~~~~~~G~~~~gp~~~~w------y~~L~ 76 (120)
-+|.||++.-.....+..+-..|+- |++||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4799999877666666667777765 66666
No 4
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.25 E-value=34 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHH-----HHhHHHHHHHHHhc
Q 033371 4 IVKEAWRKYLIQLQVHPLRTKAITAGV-----LAGCSDAIAQKISG 44 (120)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~t~~~-----l~~~gD~laQ~~~~ 44 (120)
-++.+...|.+.+.+||.+...+.+.- ....-|-+.+.+.+
T Consensus 6 ~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~ 51 (144)
T d2g7la2 6 QLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR 51 (144)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH
Confidence 367788999999999999888765432 23455666666654
No 5
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=21.97 E-value=83 Score=19.19 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhhh
Q 033371 35 SDAIAQKISGVKKLQLKRLLLLMLFDFG 62 (120)
Q Consensus 35 gD~laQ~~~~~~~~d~~R~~~~~~~G~~ 62 (120)
+.++.+..++ ...||.|.+.+..+|..
T Consensus 70 ~~V~~elF~D-G~~NWGRIVaLfaFg~~ 96 (146)
T d1k3ka_ 70 GLSMLQVSGD-GNMNWGRALAILTFGSF 96 (146)
T ss_dssp HTHHHHHCSS-CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 3444333322 34799999999999875
No 6
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=20.31 E-value=44 Score=19.17 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHH-----HHhHHHHHHHHHh
Q 033371 4 IVKEAWRKYLIQLQVHPLRTKAITAGV-----LAGCSDAIAQKIS 43 (120)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~t~~~-----l~~~gD~laQ~~~ 43 (120)
-++.+...|.+.+.+||.+...+.+.. ....-|-+-+.+.
T Consensus 6 ~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~ 50 (132)
T d2g7ga2 6 AFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLR 50 (132)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHH
Confidence 367788899999999998887766542 3344455555554
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.35 E-value=72 Score=17.41 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 033371 82 RDNKSVAKKVLLEQLIFSPWINFLFMTYF 110 (120)
Q Consensus 82 ~~~~~~~~Kvl~Dq~i~~P~~~~~f~~~~ 110 (120)
+...++++++--+-+..+|-++..|+.+.
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 35678888888666677888888887764
No 8
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=15.17 E-value=61 Score=19.17 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHH
Q 033371 5 VKEAWRKYLIQLQVHPLRTKAITAGV 30 (120)
Q Consensus 5 ~~~l~~~Y~~~l~~~Pl~t~~~t~~~ 30 (120)
+..+...|.+.+.+||...+.+.+..
T Consensus 7 L~~~a~~~~~~~~~hP~~~~l~~~~~ 32 (149)
T d1z0xa2 7 LLAFMENYYDLYQQFPCAVAIEIQTV 32 (149)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCcCHHHHhhhcc
Confidence 56677888999999999888876653
No 9
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=14.46 E-value=61 Score=18.72 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHH
Q 033371 4 IVKEAWRKYLIQLQVHPLRTKAIT 27 (120)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~t 27 (120)
-++++...|.+.+.+||.....+.
T Consensus 11 ~lr~~a~~~r~~~~~hP~~a~l~~ 34 (138)
T d2vkva2 11 FLRNNAMSFRRALLRYRDGAKVHL 34 (138)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHT
T ss_pred HHHHHHHHHHHHHHHCccHHHHhc
Confidence 367888999999999998877554
No 10
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=12.97 E-value=37 Score=20.95 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCchhHH
Q 033371 7 EAWRKYLIQLQVHPLRTK 24 (120)
Q Consensus 7 ~l~~~Y~~~l~~~Pl~t~ 24 (120)
...+.|.+.+.++||+|+
T Consensus 2 DpVr~YLreig~v~LLT~ 19 (180)
T d1ku2a2 2 DPVRQYLHEIGQVPLLTL 19 (180)
T ss_dssp HHHHHHHHHHTTSCCCCH
T ss_pred CcHHHHHHHhcCcCCCCH
Confidence 356889999999999874
Done!