BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033372
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q46751|CARR_PECCC Transcriptional activator protein CarR OS=Pectobacterium
           carotovorum subsp. carotovorum GN=carR PE=3 SV=1
          Length = 244

 Score = 29.6 bits (65), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 21  LCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLK-TLRALGFILMEHLKEKVKDLS 79
           L S  E+EV  L+S      + ++++G  E+  KF +  ++R L  I   H   K  +L+
Sbjct: 168 LLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELN 227

Query: 80  LFPGSAEPL 88
           LF    EP+
Sbjct: 228 LFHSPCEPV 236


>sp|A5A6I6|TRFE_PANTR Serotransferrin OS=Pan troglodytes GN=TF PE=2 SV=1
          Length = 698

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 69  EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
           ++L EK  +L    G+ +P+   A C+L +  N  ++T +  + C+H  L++
Sbjct: 571 KNLNEKDYELLCLDGTRKPVKEYANCHLARAPNHAVVTRKDKEACVHKILRQ 622


>sp|P02787|TRFE_HUMAN Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3
          Length = 698

 Score = 29.3 bits (64), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 69  EHLKEKVKDLSLFPGSAEPLAFVAGCNLLKCDNDDILTVEKLKTCLHIDLKR 120
           ++L EK  +L    G+ +P+   A C+L +  N  ++T +  + C+H  L++
Sbjct: 571 KNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQ 622


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,497,913
Number of Sequences: 539616
Number of extensions: 1449601
Number of successful extensions: 3459
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3455
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)