Query 033372
Match_columns 120
No_of_seqs 14 out of 16
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 13:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05234 UAF_Rrn10: UAF comple 60.5 38 0.00082 25.9 6.0 49 27-77 64-112 (120)
2 PF10975 DUF2802: Protein of u 58.8 7.3 0.00016 26.2 1.8 24 13-36 45-68 (70)
3 cd03572 ENTH_epsin_related ENT 47.8 9.7 0.00021 28.2 1.1 27 66-94 38-65 (122)
4 PF03444 HrcA_DNA-bdg: Winged 41.9 18 0.00038 25.5 1.6 34 24-57 2-35 (78)
5 PF10581 Synapsin_N: Synapsin 39.1 10 0.00022 23.3 0.0 17 68-84 1-17 (32)
6 COG3869 Arginine kinase [Amino 31.0 87 0.0019 27.7 4.4 46 21-66 226-277 (352)
7 PF07539 DRIM: Down-regulated 30.1 36 0.00077 25.3 1.7 22 14-35 115-136 (141)
8 PF02194 PXA: PXA domain; Int 26.4 2.5E+02 0.0054 20.2 5.7 53 18-73 21-75 (185)
9 COG2524 Predicted transcriptio 26.3 46 0.001 28.7 1.9 45 22-66 2-55 (294)
10 PF14629 ORC4_C: Origin recogn 25.5 97 0.0021 23.0 3.3 37 17-62 93-129 (203)
11 PF09012 FeoC: FeoC like trans 25.3 49 0.0011 21.0 1.5 32 31-63 1-34 (69)
12 KOG2404 Fumarate reductase, fl 25.2 31 0.00068 31.3 0.7 71 3-89 88-164 (477)
13 PF04604 L_biotic_typeA: Type- 24.6 47 0.001 22.0 1.3 18 16-33 7-24 (51)
14 PHA02046 hypothetical protein 24.5 51 0.0011 24.6 1.6 26 89-115 45-70 (99)
15 TIGR02826 RNR_activ_nrdG3 anae 23.6 69 0.0015 23.7 2.2 35 81-116 12-57 (147)
16 PRK11476 DNA-binding transcrip 23.5 34 0.00073 26.0 0.5 31 45-77 6-36 (113)
17 PF06837 Fijivirus_P9-2: Fijiv 21.7 63 0.0014 26.9 1.8 30 3-32 25-54 (214)
No 1
>PF05234 UAF_Rrn10: UAF complex subunit Rrn10; InterPro: IPR022793 The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor [].
Probab=60.46 E-value=38 Score=25.91 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=40.8
Q ss_pred chhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhhh
Q 033372 27 SEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKD 77 (120)
Q Consensus 27 sELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk~ 77 (120)
|++| |-++-.-+-+....-| +.+.+.||=-.|=|+|+.+=+.+++=+-+
T Consensus 64 Pd~D-LkviHyfasq~~l~k~-~~l~~~~DETaLialGlLvE~Wv~e~l~~ 112 (120)
T PF05234_consen 64 PDSD-LKVIHYFASQLCLQKY-PHLVNSFDETALIALGLLVEEWVDEYLTE 112 (120)
T ss_pred Cchh-HHHHHHHHHHHHHHHh-HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 6788 8888888888877766 67889999999999999998888776543
No 2
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=58.76 E-value=7.3 Score=26.20 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.1
Q ss_pred CchhhhHhhhccCcchhHHHHhHH
Q 033372 13 NRVEDVSWLCSLSESEVDMLISLK 36 (120)
Q Consensus 13 nr~~D~~WlcsLSesELDmLIsLK 36 (120)
-+.++++--|.||.+|.+++++|.
T Consensus 45 a~~~el~~~CgL~~aEAeLl~~Lh 68 (70)
T PF10975_consen 45 ASVEELMEECGLSRAEAELLLSLH 68 (70)
T ss_pred CCHHHHHHHcCCCHHHHHHHHHHh
Confidence 356788999999999999999984
No 3
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=47.78 E-value=9.7 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.296 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcCCCCCc-cchhhhcccc
Q 033372 66 ILMEHLKEKVKDLSLFPGS-AEPLAFVAGC 94 (120)
Q Consensus 66 VLmE~lk~rvk~~Sl~p~v-~~~lalld~C 94 (120)
-+|+||=+|+++.| |.| ++.|.+++.|
T Consensus 38 ei~d~L~kRL~~~~--~hVK~K~Lrilk~l 65 (122)
T cd03572 38 ELLEYLLKRLKRSS--PHVKLKVLKIIKHL 65 (122)
T ss_pred HHHHHHHHHhcCCC--CcchHHHHHHHHHH
Confidence 47999999999988 999 9999999875
No 4
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=41.92 E-value=18 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=30.6
Q ss_pred cCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCH
Q 033372 24 LSESEVDMLISLKLLILQRAKVIGHEELANKFDL 57 (120)
Q Consensus 24 LSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL 57 (120)
|++...++|-.|-.+-++-..-.|-+++|++++.
T Consensus 2 Lt~rq~~IL~alV~~Y~~~~~PVgSk~ia~~l~~ 35 (78)
T PF03444_consen 2 LTERQREILKALVELYIETGEPVGSKTIAEELGR 35 (78)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHCC
Confidence 7888899999999999999999999999997664
No 5
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=39.07 E-value=10 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=14.1
Q ss_pred HHHHHHHhhhcCCCCCc
Q 033372 68 MEHLKEKVKDLSLFPGS 84 (120)
Q Consensus 68 mE~lk~rvk~~Sl~p~v 84 (120)
|.+||.|+.|++...++
T Consensus 1 Mn~LrRRlSDs~f~~nL 17 (32)
T PF10581_consen 1 MNFLRRRLSDSNFMANL 17 (32)
T ss_pred CcHHHhhhcchhhhhcC
Confidence 67999999999877654
No 6
>COG3869 Arginine kinase [Amino acid transport and metabolism]
Probab=30.99 E-value=87 Score=27.75 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=35.2
Q ss_pred hhccCcchhHHHHhHHHHHHH--HHHhhCcHHHhhhCCH----HHHHHHHHH
Q 033372 21 LCSLSESEVDMLISLKLLILQ--RAKVIGHEELANKFDL----KTLRALGFI 66 (120)
Q Consensus 21 lcsLSesELDmLIsLK~L~~~--RAk~~Gh~~LA~kFDL----~~LRAlglV 66 (120)
-|||--||-|.+-+|+..+-| -|+.+--+.|-.+|.+ +.+|++|+.
T Consensus 226 q~TLGkSE~~Ive~Lr~Vv~qii~qEr~aR~~L~~~n~~eledrv~RS~GiL 277 (352)
T COG3869 226 QCTLGKSEEDIVEDLRLVVSQIISQERAARKQLVKENKLELEDRVLRSLGIL 277 (352)
T ss_pred eeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 389999999999999987754 4566666667665544 789999985
No 7
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=30.09 E-value=36 Score=25.33 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.5
Q ss_pred chhhhHhhhccCcchhHHHHhH
Q 033372 14 RVEDVSWLCSLSESEVDMLISL 35 (120)
Q Consensus 14 r~~D~~WlcsLSesELDmLIsL 35 (120)
|..-++||.+++++|+..+++|
T Consensus 115 R~aIL~~L~~l~~~El~~Fl~l 136 (141)
T PF07539_consen 115 RAAILRFLAGLSEEELGLFLDL 136 (141)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 5567899999999999999876
No 8
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=26.39 E-value=2.5e+02 Score=20.16 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=37.9
Q ss_pred hHhhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHH--HHHHHHHHHHHHH
Q 033372 18 VSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTL--RALGFILMEHLKE 73 (120)
Q Consensus 18 ~~WlcsLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~L--RAlglVLmE~lk~ 73 (120)
..|...+|+.+ .+.-.++..+-+-...... -+.+.|+..+ ..+.-++..|++.
T Consensus 21 ~sWY~~Is~d~-~F~~ei~~~l~~~~~~l~~--R~~~vD~~~ll~~~l~~~l~~Hl~~ 75 (185)
T PF02194_consen 21 NSWYSKISPDP-EFPNEIRRILRHALRELSQ--RLSRVDLVKLLLDDLLPILTKHLRD 75 (185)
T ss_pred HhhhhccCCcH-HHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999 9999998776554444322 2357787654 7777788888765
No 9
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=26.29 E-value=46 Score=28.75 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=37.7
Q ss_pred hccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCC---------HHHHHHHHHH
Q 033372 22 CSLSESEVDMLISLKLLILQRAKVIGHEELANKFD---------LKTLRALGFI 66 (120)
Q Consensus 22 csLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFD---------L~~LRAlglV 66 (120)
-.||.+.-+.|..|-.|--+.-....-+|.|+..+ .+.|||||+|
T Consensus 2 ~~LT~~QkeIL~aLi~LY~~~~r~IKgeeIA~~l~rnpGTVRNqmq~LkaLgLV 55 (294)
T COG2524 2 KELTSSQKEILQALINLYRRKKRPIKGEEIAEVLNRNPGTVRNQMQSLKALGLV 55 (294)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCcchHHHHHHHccCcchHHHHHHHHHhcCcc
Confidence 36889999999999999888877888899999554 3678899987
No 10
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=25.51 E-value=97 Score=22.98 Aligned_cols=37 Identities=35% Similarity=0.449 Sum_probs=27.6
Q ss_pred hhHhhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHH
Q 033372 17 DVSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRA 62 (120)
Q Consensus 17 D~~WlcsLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRA 62 (120)
-+..+.+||..||=+||+.+.|+ . |++ +.|+..|..+
T Consensus 93 ~~~~l~~LS~LEL~LLIa~~rl~-~-----~~~---~~~NF~~vy~ 129 (203)
T PF14629_consen 93 KLSLLKSLSVLELCLLIAAARLI-K-----GYE---ETFNFEMVYD 129 (203)
T ss_pred hhhHhccCCHHHHHHHHHHHHHH-h-----ccC---CCccHHHHHH
Confidence 46779999999999999998887 2 233 5666666443
No 11
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=25.32 E-value=49 Score=21.02 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHhhCcHHHhhhCCH--HHHHHH
Q 033372 31 MLISLKLLILQRAKVIGHEELANKFDL--KTLRAL 63 (120)
Q Consensus 31 mLIsLK~L~~~RAk~~Gh~~LA~kFDL--~~LRAl 63 (120)
||..++..+- .-..+...+||..|+. .+++++
T Consensus 1 ~L~~i~~~l~-~~~~~S~~eLa~~~~~s~~~ve~m 34 (69)
T PF09012_consen 1 MLQEIRDYLR-ERGRVSLAELAREFGISPEAVEAM 34 (69)
T ss_dssp -CHHHHHHHH-HS-SEEHHHHHHHTT--HHHHHHH
T ss_pred CHHHHHHHHH-HcCCcCHHHHHHHHCcCHHHHHHH
Confidence 4555666443 3456788999999987 667764
No 12
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=25.17 E-value=31 Score=31.30 Aligned_cols=71 Identities=30% Similarity=0.408 Sum_probs=51.0
Q ss_pred hhHHHHHhhcCchhhhHhhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHH-----HHHHHHHHHHHHhhh
Q 033372 3 VKEMNEILSKNRVEDVSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRA-----LGFILMEHLKEKVKD 77 (120)
Q Consensus 3 ~~~~~~~l~~nr~~D~~WlcsLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRA-----lglVLmE~lk~rvk~ 77 (120)
+.++-++|.+|+..-++||..==+=.+|.|-. -.||.+= +|=|. -|+-+|-.|..|+|+
T Consensus 88 ~~eLm~~La~~S~~AvewL~~ef~lkld~la~----------lgGHSvp------RTHr~s~plppgfei~~~L~~~l~k 151 (477)
T KOG2404|consen 88 VPELMEKLAANSASAVEWLRGEFDLKLDLLAQ----------LGGHSVP------RTHRSSGPLPPGFEIVKALSTRLKK 151 (477)
T ss_pred cHHHHHHHHhcCHHHHHHHhhhcccchHHHHH----------hcCCCCC------cccccCCCCCCchHHHHHHHHHHHH
Confidence 56888999999999999999855556666543 3566542 12222 267788888899988
Q ss_pred c-CCCCCccchhh
Q 033372 78 L-SLFPGSAEPLA 89 (120)
Q Consensus 78 ~-Sl~p~v~~~la 89 (120)
. |-.|..++-+-
T Consensus 152 ~as~~pe~~ki~~ 164 (477)
T KOG2404|consen 152 KASENPELVKILL 164 (477)
T ss_pred hhhcChHHHhhhh
Confidence 7 88888877543
No 13
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=24.57 E-value=47 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.7
Q ss_pred hhhHhhhccCcchhHHHH
Q 033372 16 EDVSWLCSLSESEVDMLI 33 (120)
Q Consensus 16 ~D~~WlcsLSesELDmLI 33 (120)
+-..-+..+|++|||.+|
T Consensus 7 ea~~~lqevs~eELd~il 24 (51)
T PF04604_consen 7 EALNSLQEVSDEELDQIL 24 (51)
T ss_pred HHHHHHHhcCHHHHHHHh
Confidence 556678889999999886
No 14
>PHA02046 hypothetical protein
Probab=24.45 E-value=51 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=21.3
Q ss_pred hhccccccccCCCCccccHHHHHHhhh
Q 033372 89 AFVAGCNLLKCDNDDILTVEKLKTCLH 115 (120)
Q Consensus 89 alld~CNLLk~~~~d~~~ieel~t~i~ 115 (120)
.||.- |...|.|.|+.+|++|+...-
T Consensus 45 KFLKD-NnItcdpaD~~~m~~Lr~e~~ 70 (99)
T PHA02046 45 KFLKD-NEITCDPADTINIDRLREEFR 70 (99)
T ss_pred HHhhc-CCcccCcccHHHHHHHHHHHH
Confidence 46654 778999999999999998764
No 15
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.60 E-value=69 Score=23.68 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=26.0
Q ss_pred CCCccchhhhccccccccC---C--------CCccccHHHHHHhhhh
Q 033372 81 FPGSAEPLAFVAGCNLLKC---D--------NDDILTVEKLKTCLHI 116 (120)
Q Consensus 81 ~p~v~~~lalld~CNLLk~---~--------~~d~~~ieel~t~i~~ 116 (120)
+|+.+--..|+.+||+ .| + .+...+.||+...|..
T Consensus 12 ~p~~~~~~vfl~GCnl-rC~~C~n~~~~~~~~g~~lt~eel~~~I~~ 57 (147)
T TIGR02826 12 VPNEYSLAFYITGCPL-GCKGCHSPESWHLSEGTKLTPEYLTKTLDK 57 (147)
T ss_pred cCCCEEEEEEeCCCCC-CCCCCCChHHcCCCCCcCCCHHHHHHHHHH
Confidence 5888888999999997 44 2 2445788888877643
No 16
>PRK11476 DNA-binding transcriptional activator CaiF; Provisional
Probab=23.50 E-value=34 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.0
Q ss_pred hhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhhh
Q 033372 45 VIGHEELANKFDLKTLRALGFILMEHLKEKVKD 77 (120)
Q Consensus 45 ~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk~ 77 (120)
+..-.|.|++||.+...|+..| -|+-..|++
T Consensus 6 WvsAkEIak~Fdi~~ckAiNtv--SYILS~V~E 36 (113)
T PRK11476 6 WVIAREISIHFDIEHCKAINTL--SYILSEVTE 36 (113)
T ss_pred ceeHHHHHHhcCCcccchhhHH--HHHHhccce
Confidence 4456789999999999999876 355444544
No 17
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=21.70 E-value=63 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=23.4
Q ss_pred hhHHHHHhhcCchhhhHhhhccCcchhHHH
Q 033372 3 VKEMNEILSKNRVEDVSWLCSLSESEVDML 32 (120)
Q Consensus 3 ~~~~~~~l~~nr~~D~~WlcsLSesELDmL 32 (120)
.+..+-++.+-+..|...=.+||+||+|=-
T Consensus 25 ~~~~k~~m~d~snf~~ife~~~sdse~Dd~ 54 (214)
T PF06837_consen 25 IESIKPIMQDFSNFDEIFERPLSDSELDDK 54 (214)
T ss_pred HHhhhHHHHhccchHHHHcccCcchhHHHH
Confidence 455566777777888888899999999953
Done!