Query 033372
Match_columns 120
No_of_seqs 14 out of 16
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 21:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xa6_A KH domain-containing\,R 23.0 27 0.00093 21.5 0.9 15 78-92 18-32 (41)
2 2fho_A Spliceosomal protein SF 17.0 45 0.0016 20.8 1.0 11 22-32 20-30 (47)
3 1b6c_B TGF-B superfamily recep 16.0 2.8E+02 0.0096 19.4 5.0 19 97-115 314-332 (342)
4 1x9f_D Globin C, hemoglobin ch 13.5 2.2E+02 0.0074 18.6 3.7 46 23-77 76-121 (140)
5 3hmm_A TGF-beta receptor type- 13.3 3.9E+02 0.013 19.6 5.4 18 97-114 275-292 (303)
6 3hug_A RNA polymerase sigma fa 12.9 2.6E+02 0.0087 17.0 4.9 55 18-78 32-88 (92)
7 1wi9_A Protein C20ORF116 homol 12.9 37 0.0013 22.7 -0.3 24 39-62 15-38 (72)
8 3ll6_A Cyclin G-associated kin 12.8 2.6E+02 0.0089 19.4 4.0 55 59-115 235-304 (337)
9 2p1a_A Hypothetical protein; s 12.3 95 0.0033 19.4 1.5 9 47-55 101-109 (154)
10 3soc_A Activin receptor type-2 12.2 2.4E+02 0.0081 20.2 3.8 25 89-115 290-314 (322)
No 1
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=23.00 E-value=27 Score=21.53 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=13.3
Q ss_pred cCCCCCccchhhhcc
Q 033372 78 LSLFPGSAEPLAFVA 92 (120)
Q Consensus 78 ~Sl~p~v~~~lalld 92 (120)
+|++|+.+|..+|++
T Consensus 18 ~sLdPsf~Ha~RLl~ 32 (41)
T 2xa6_A 18 DSLDPSFTHAMQLLT 32 (41)
T ss_dssp HHSCTTCHHHHHHHH
T ss_pred hccCchHHHHHHHHH
Confidence 499999999999885
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.05 E-value=45 Score=20.85 Aligned_cols=11 Identities=36% Similarity=0.592 Sum_probs=9.1
Q ss_pred hccCcchhHHH
Q 033372 22 CSLSESEVDML 32 (120)
Q Consensus 22 csLSesELDmL 32 (120)
+-||+.|||++
T Consensus 20 rpltDEeLD~~ 30 (47)
T 2fho_A 20 RPLSDEELDAM 30 (47)
T ss_dssp CCSCTTHHHHH
T ss_pred CCCCHHHHHHh
Confidence 34899999986
No 3
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=16.05 E-value=2.8e+02 Score=19.43 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.3
Q ss_pred ccCCCCccccHHHHHHhhh
Q 033372 97 LKCDNDDILTVEKLKTCLH 115 (120)
Q Consensus 97 Lk~~~~d~~~ieel~t~i~ 115 (120)
|.-+|.+-.+++|+...+.
T Consensus 314 l~~dp~~Rps~~~i~~~L~ 332 (342)
T 1b6c_B 314 WYANGAARLTALRIKKTLS 332 (342)
T ss_dssp CCSSGGGSCCHHHHHHHHH
T ss_pred hccChhhCCCHHHHHHHHH
Confidence 4578888888888877654
No 4
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=13.45 E-value=2.2e+02 Score=18.64 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=31.1
Q ss_pred ccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhhh
Q 033372 23 SLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKD 77 (120)
Q Consensus 23 sLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk~ 77 (120)
+|.+++ .+--.|+.|.-++++ ...+......+|-+|++++++.+.+
T Consensus 76 ~ld~~~-~l~~~l~~L~~~H~~--------~gV~p~~f~~~~~~Ll~~l~~~lg~ 121 (140)
T 1x9f_D 76 MLDTPD-MLAAQLAHLKVQHVE--------RNLKPEFFDIFLKHLLHVLGDRLGT 121 (140)
T ss_dssp TTTCHH-HHHHHHHHHHHHHHT--------SCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HcCCHH-HHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 444433 233445555555544 2467888899999999999998875
No 5
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=13.35 E-value=3.9e+02 Score=19.56 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=13.7
Q ss_pred ccCCCCccccHHHHHHhh
Q 033372 97 LKCDNDDILTVEKLKTCL 114 (120)
Q Consensus 97 Lk~~~~d~~~ieel~t~i 114 (120)
+.-+|..-.|++|+...+
T Consensus 275 l~~dP~~RPt~~ei~~~L 292 (303)
T 3hmm_A 275 WYANGAARLTALRIKKTL 292 (303)
T ss_dssp CCSSGGGSCCHHHHHHHH
T ss_pred cccCHhHCcCHHHHHHHH
Confidence 556888888888887655
No 6
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=12.94 E-value=2.6e+02 Score=16.99 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=37.8
Q ss_pred hHhhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCH--HHHHHHHHHHHHHHHHHhhhc
Q 033372 18 VSWLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDL--KTLRALGFILMEHLKEKVKDL 78 (120)
Q Consensus 18 ~~WlcsLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL--~~LRAlglVLmE~lk~rvk~~ 78 (120)
..++..|++.+-.+++ ++...-....+.|..++. .+.+..=--.+..||+.++..
T Consensus 32 ~~~l~~L~~~~r~vl~------l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 32 ADALAQLSAEHRAVIQ------RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HHHHHTSCHHHHHHHH------HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH------HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888876543 445677788999997776 566655555666777776654
No 7
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=12.93 E-value=37 Score=22.72 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.0
Q ss_pred HHHHHHhhCcHHHhhhCCHHHHHH
Q 033372 39 ILQRAKVIGHEELANKFDLKTLRA 62 (120)
Q Consensus 39 ~~~RAk~~Gh~~LA~kFDL~~LRA 62 (120)
.|...|+.-.++||..|.+++=-+
T Consensus 15 yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 15 YIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp HHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHcCeeeHHHHHHHhCCChHHH
Confidence 367789999999999999987443
No 8
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=12.76 E-value=2.6e+02 Score=19.35 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhh-----------hc-CC--CCCcc-chhhhccccccccCCCCccccHHHHHHhhh
Q 033372 59 TLRALGFILMEHLKEKVK-----------DL-SL--FPGSA-EPLAFVAGCNLLKCDNDDILTVEKLKTCLH 115 (120)
Q Consensus 59 ~LRAlglVLmE~lk~rvk-----------~~-Sl--~p~v~-~~lalld~CNLLk~~~~d~~~ieel~t~i~ 115 (120)
-.-++|+++.|-+-++.- .. .. .+... ....|+..| |.-+|..-.+++|+...+.
T Consensus 235 Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--l~~~p~~Rps~~e~l~~l~ 304 (337)
T 3ll6_A 235 DIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAM--LQVNPEERLSIAEVVHQLQ 304 (337)
T ss_dssp HHHHHHHHHHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHH--SCSSGGGSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHH--ccCChhhCcCHHHHHHHHH
Confidence 467999999998754321 00 00 01111 122345544 7778888899999887653
No 9
>2p1a_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.10A {Bacillus cereus} SCOP: a.213.1.2
Probab=12.28 E-value=95 Score=19.43 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=4.0
Q ss_pred CcHHHhhhC
Q 033372 47 GHEELANKF 55 (120)
Q Consensus 47 Gh~~LA~kF 55 (120)
.-++|...+
T Consensus 101 ~~~~L~~~~ 109 (154)
T 2p1a_A 101 SNEQLAEMK 109 (154)
T ss_dssp CHHHHHCEE
T ss_pred CHHHHhccc
Confidence 334455443
No 10
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=12.21 E-value=2.4e+02 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=17.9
Q ss_pred hhccccccccCCCCccccHHHHHHhhh
Q 033372 89 AFVAGCNLLKCDNDDILTVEKLKTCLH 115 (120)
Q Consensus 89 alld~CNLLk~~~~d~~~ieel~t~i~ 115 (120)
.|+..| |.-+|.+-.|++|+...+.
T Consensus 290 ~li~~c--l~~dP~~Rps~~ell~~L~ 314 (322)
T 3soc_A 290 ETIEEC--WDHDAEARLSAGCVGERIT 314 (322)
T ss_dssp HHHHHH--TCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHH--ccCChhhCcCHHHHHHHHH
Confidence 345554 6778888888888887654
Done!