Query 033372
Match_columns 120
No_of_seqs 14 out of 16
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 21:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033372.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033372hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dn3b1 a.1.1.2 (B:2-146) Hemo 33.8 32 0.0023 21.7 4.6 48 20-78 73-120 (145)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 20.8 5.7 0.00042 21.6 -1.0 30 89-118 4-33 (54)
3 d1wi9a_ a.4.5.47 (A:) Hypothet 20.4 9.5 0.00069 24.2 -0.1 25 39-63 15-39 (72)
4 d1itha_ a.1.1.2 (A:) Hemoglobi 20.2 47 0.0034 21.0 3.4 33 44-76 88-120 (141)
5 d1v4wb_ a.1.1.2 (B:) Hemoglobi 17.4 1.1E+02 0.0082 18.8 5.5 24 55-78 98-121 (146)
6 d1wb9a1 a.113.1.1 (A:270-566) 17.1 33 0.0024 22.6 2.1 21 20-40 272-294 (297)
7 d1cx4a1 b.82.3.2 (A:130-265) R 16.5 51 0.0037 19.6 2.8 20 15-34 18-37 (136)
8 d1vjya_ d.144.1.7 (A:) Type I 16.1 1.3E+02 0.0092 20.4 5.2 15 60-74 201-215 (303)
9 d2bgxa2 d.118.1.1 (A:7-179) Pr 15.6 35 0.0026 23.0 2.0 43 23-65 115-170 (173)
10 d1gcvb_ a.1.1.2 (B:) Hemoglobi 15.3 1.3E+02 0.0096 18.7 5.1 41 31-78 71-111 (136)
No 1
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.80 E-value=32 Score=21.74 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.8
Q ss_pred hhhccCcchhHHHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhhhc
Q 033372 20 WLCSLSESEVDMLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (120)
Q Consensus 20 WlcsLSesELDmLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk~~ 78 (120)
...+|.++| .++-.|+.| ||.. -.-+....+.+|-+|++++++.+.+.
T Consensus 73 ~V~~Ldd~~-~l~~~L~~l--------~~~h--~gv~~~~f~~~~~~ll~~l~~~lg~~ 120 (145)
T d2dn3b1 73 GLAHLDNLK-GTFATLSEL--------HCDK--LHVDPENFRLLGNVLVCVLAHHFGKE 120 (145)
T ss_dssp HHHTTTCHH-HHHHHHHHH--------HHTT--TCCCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhccCHH-HHHHHHHHh--------cccc--cCCChhHHHHHHHHHHHHHHHHcCcc
Confidence 345666666 456666665 2222 23678889999999999999998754
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=20.85 E-value=5.7 Score=21.65 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=23.1
Q ss_pred hhccccccccCCCCccccHHHHHHhhhhcc
Q 033372 89 AFVAGCNLLKCDNDDILTVEKLKTCLHIDL 118 (120)
Q Consensus 89 alld~CNLLk~~~~d~~~ieel~t~i~~~~ 118 (120)
++-..++.+..|..+.+++++|....|...
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~ 33 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSK 33 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCH
Confidence 344556778889999999999998887654
No 3
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.37 E-value=9.5 Score=24.22 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHHhhCcHHHhhhCCHHHHHHH
Q 033372 39 ILQRAKVIGHEELANKFDLKTLRAL 63 (120)
Q Consensus 39 ~~~RAk~~Gh~~LA~kFDL~~LRAl 63 (120)
.|...|+.-.++||.+|++++=-++
T Consensus 15 ~Ik~~Kvv~LedLAa~F~lktqd~i 39 (72)
T d1wi9a_ 15 YIKKSKVVLLEDLAFQMGLRTQDAI 39 (72)
T ss_dssp HHHHCSEECHHHHHHHHCSCHHHHH
T ss_pred HHHHCCEeeHHHHHHHcCCcHHHHH
Confidence 3678899999999999999985444
No 4
>d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}
Probab=20.19 E-value=47 Score=20.99 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HhhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhh
Q 033372 44 KVIGHEELANKFDLKTLRALGFILMEHLKEKVK 76 (120)
Q Consensus 44 k~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk 76 (120)
+.+|..+.+...+......+|-+|+++|++.+.
T Consensus 88 ~~lg~~H~~rgv~~~~F~~~~~~l~~~l~~~lg 120 (141)
T d1itha_ 88 KAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFS 120 (141)
T ss_dssp HTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345666666778899999999999999999874
No 5
>d1v4wb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=17.40 E-value=1.1e+02 Score=18.84 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 033372 55 FDLKTLRALGFILMEHLKEKVKDL 78 (120)
Q Consensus 55 FDL~~LRAlglVLmE~lk~rvk~~ 78 (120)
-+....+.+|-+|++++++.+.+.
T Consensus 98 V~~~~f~~~~~~ll~~l~~~lg~~ 121 (146)
T d1v4wb_ 98 VDPDNFRILGDCLTVVIAANLGDA 121 (146)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcc
Confidence 567889999999999999998754
No 6
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
Probab=17.14 E-value=33 Score=22.63 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=14.7
Q ss_pred hhhccCc--chhHHHHhHHHHHH
Q 033372 20 WLCSLSE--SEVDMLISLKLLIL 40 (120)
Q Consensus 20 WlcsLSe--sELDmLIsLK~L~~ 40 (120)
+|..+++ +|||+|+||=.+|.
T Consensus 272 ~l~~~~~~iaeLD~l~S~A~~A~ 294 (297)
T d1wb9a1 272 ALQQSASALAELDVLVNLAERAY 294 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 69999999977664
No 7
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.48 E-value=51 Score=19.56 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=15.5
Q ss_pred hhhhHhhhccCcchhHHHHh
Q 033372 15 VEDVSWLCSLSESEVDMLIS 34 (120)
Q Consensus 15 ~~D~~WlcsLSesELDmLIs 34 (120)
...+.||.+||+.+++-+++
T Consensus 18 l~~~~~F~~l~~~~~~~l~~ 37 (136)
T d1cx4a1 18 CKDILLFKNLDPEQMSQVLD 37 (136)
T ss_dssp HTTCGGGTTCCHHHHHHHHH
T ss_pred HhCCHhhhcCCHHHHHHHhc
Confidence 44567999999999887654
No 8
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.15 E-value=1.3e+02 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 033372 60 LRALGFILMEHLKEK 74 (120)
Q Consensus 60 LRAlglVLmE~lk~r 74 (120)
..|+|++|.|-+.++
T Consensus 201 i~S~Gvvl~el~tg~ 215 (303)
T d1vjya_ 201 IYAMGLVFWEIARRC 215 (303)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred hhhhHHHHHHHhhCC
Confidence 789999999988653
No 9
>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.63 E-value=35 Score=23.02 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=31.7
Q ss_pred ccCcchhHHHHhHHHHHHHHHH-----hhCcHHHhh--------hCCHHHHHHHHH
Q 033372 23 SLSESEVDMLISLKLLILQRAK-----VIGHEELAN--------KFDLKTLRALGF 65 (120)
Q Consensus 23 sLSesELDmLIsLK~L~~~RAk-----~~Gh~~LA~--------kFDL~~LRAlgl 65 (120)
..++.+++.|+.|-.-++.|-. +.||.++|- .||-+.|+.-|+
T Consensus 115 ~~t~aQ~~~l~~L~~~l~~~y~I~~~~IvgH~diap~RK~DPG~~FpW~~l~~~~~ 170 (173)
T d2bgxa2 115 PFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQGI 170 (173)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCGGGEEEHHHHSTTTCCTTCTTSCHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHHHHHcCCChHHEeeecccCCCCCCCCCCCCCHHHHHHcCC
Confidence 3688999999998777766654 689999962 466677766553
No 10
>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=15.33 E-value=1.3e+02 Score=18.68 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHhHHHHHHHHHHhhCcHHHhhhCCHHHHHHHHHHHHHHHHHHhhhc
Q 033372 31 MLISLKLLILQRAKVIGHEELANKFDLKTLRALGFILMEHLKEKVKDL 78 (120)
Q Consensus 31 mLIsLK~L~~~RAk~~Gh~~LA~kFDL~~LRAlglVLmE~lk~rvk~~ 78 (120)
+--.|+.|.-.+|...| =+......+|=+|++.|++.+.+.
T Consensus 71 l~~~l~~L~~~H~~~~~-------V~p~~f~~~g~~ll~~L~~~lg~~ 111 (136)
T d1gcvb_ 71 VKTLFKDLSKKHADDLH-------VDPGSFHLLTDCIIVELAYLRKDC 111 (136)
T ss_dssp HHHHTHHHHHHHHHTTC-------CCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHhHhhcC-------CCcHHHHHHHHHHHHHHHHhCccc
Confidence 33557777777665444 467888999999999999998764
Done!