Citrus Sinensis ID: 033373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccEEEccccEEEEccccccccEHHHHHHHcccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mgsrgllllkgaapkhhifnntkgsifsskmptryyyydydynnrtrncsttttrssleppdvprlaqtarisltpheveefaPKIRQVIDWFgqlqdvdldsvdPALRADLSALSQRRK
Flexible Loop (DISEMBL)
MGSRGLLLLkgaapkhhifnntkgsifsskmptRYYYYDYDYNNRTRNCSTtttrssleppdvpRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADlsalsqrrk
Low Complexity Region (SEG)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPtryyyydydynnrtrncsttttrssLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK
Disordered region (IsUnstruct)
*****LLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTR************************ISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS*****************
Disordered Region (DISOPRED)
****GLL*LKGAAPKHHIFNN****************************************DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADL********
Disordered Region (DISEMBL)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCS***********DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK
Disordered Region (DISPRO)
*GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNR********TRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
D7STK2	137	Glutamyl-tRNA(Gln) amidot	yes	no	0.8	0.700	0.594	9e-28
B9INH0	141	Glutamyl-tRNA(Gln) amidot	yes	no	0.8	0.680	0.521	3e-21
B9RRX2	143	Glutamyl-tRNA(Gln) amidot	N/A	no	0.5	0.419	0.783	4e-21
F4JV80	155	Glutamyl-tRNA(Gln) amidot	yes	no	0.933	0.722	0.478	4e-20
Q7XZZ1	153	Glutamyl-tRNA(Gln) amidot	yes	no	0.525	0.411	0.698	1e-19
A2XK57	153	Glutamyl-tRNA(Gln) amidot	N/A	no	0.525	0.411	0.698	1e-19
C5WR30	146	Glutamyl-tRNA(Gln) amidot	N/A	no	0.758	0.623	0.472	1e-17
A9P2J1	181	Glutamyl-tRNA(Gln) amidot	N/A	no	0.633	0.419	0.539	5e-17
Q5FND2	95	Aspartyl/glutamyl-tRNA(As	yes	no	0.475	0.6	0.403	2e-06
B7K034	98	Aspartyl/glutamyl-tRNA(As	yes	no	0.4	0.489	0.395	6e-05

>sp|D7STK2|GATC_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 77/111 (69%), Gaps = 15/111 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RAD
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRAD 96

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Vitis vinifera (taxid: 29760)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B9INH0|GATC_POPTR Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa GN=GATC PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 69/115 (60%), Gaps = 19/115 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RAD
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRAD 100

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B9RRX2|GATC_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RAD
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Ricinus communis (taxid: 3988)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|F4JV80|GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATC PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 76/115 (66%), Gaps = 3/115 (2%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYD--YNNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADL 112
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA++
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEM 115

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q7XZZ1|GATC_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATC PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 53/63 (84%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQ 117
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRA  +A + 
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGNS 117

Query: 118 RRK 120
            R+
Sbjct: 118 LRE 120

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A2XK57|GATC_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATC PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 53/63 (84%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQ 117
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRA  +A + 
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGNS 117

Query: 118 RRK 120
            R+
Sbjct: 118 LRE 120

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|C5WR30|GATC_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATC PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query: 30  KMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89
           + P    Y+    ++ +           LEPPD+ RLA  ARISL+P E E+F PKIRQV
Sbjct: 23  RRPAARTYWPRPLSSSSHVTPAAAGAGELEPPDLTRLANAARISLSPQEAEDFEPKIRQV 82

Query: 90  IDWFGQLQDVDLDSVDPALRADLSALSQRRK 120
           +DWFGQLQ VDL+S++P+LRA  +A S  R+
Sbjct: 83  VDWFGQLQAVDLESIEPSLRAGTTADSSLRE 113

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Sorghum bicolor (taxid: 4558)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9P2J1|GATC_PICSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Picea sitchensis GN=GATC PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%)

Query: 44  NRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS 103
           +R++     +  ++ E PDV +LA  ARISLTP EVE++ PKI QVIDWFGQLQ V+L++
Sbjct: 70  SRSQPWRFYSVHNNFEAPDVVQLAAKARISLTPKEVEDYGPKIGQVIDWFGQLQGVNLEN 129

Query: 104 VDPALRADLSALSQRR 119
           V+PA+RAD   LS  R
Sbjct: 130 VEPAIRADTDKLSNLR 145

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Picea sitchensis (taxid: 3332)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5FND2|GATC_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Gluconobacter oxydans (strain 621H) GN=gatC PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLS 113
           SL+   V R+A+ ARI L P E+E     +  +IDW  QL++VD+  VDP +   L+
Sbjct: 2   SLDAKTVTRIARLARIGLQPEEIETLGKDMGSIIDWVEQLKEVDVTGVDPMIGTGLA 58

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B7K034|GATC_CYAP8 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Cyanothece sp. (strain PCC 8801) GN=gatC PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 32/48 (66%)

Query: 63  VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           V ++A  AR+ +TP E E FAP++  ++ +F QL ++D ++V P  RA
Sbjct: 7   VEKIAHLARLEITPAEEEAFAPQLNSILQYFDQLSELDTENVPPMTRA 54

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
225429410	137	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.8	0.700	0.594	4e-26
449502831	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.916	0.758	0.563	1e-24
449436902	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.916	0.758	0.563	2e-24
388491928	139	unknown [Lotus japonicus]	0.8	0.690	0.5	6e-20
224142842	141	predicted protein [Populus trichocarpa]	0.8	0.680	0.521	1e-19
356535682	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.541	0.454	0.723	1e-19
326505836	145	predicted protein [Hordeum vulgare subsp	0.608	0.503	0.616	1e-19
255550886	143	Glutamyl-tRNA(Gln) amidotransferase subu	0.5	0.419	0.783	2e-19
356576181	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.541	0.454	0.676	5e-19
357119986	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.883	0.741	0.445	6e-19

>gi|225429410|ref|XP_002275650.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Vitis vinifera] gi|353558764|sp|D7STK2.1|GATC_VITVI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|296081596|emb|CBI20601.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 77/111 (69%), Gaps = 15/111 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RAD
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRAD 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502831|ref|XP_004161755.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 9/119 (7%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS-SLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +  S SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQR 118
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RAD    SQR
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQR 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436902|ref|XP_004136231.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 9/119 (7%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS-SLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +  S SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQR 118
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RAD    SQR
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGSQR 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491928|gb|AFK34030.1| unknown [Lotus japonicus]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 18/114 (15%)

Query: 1   MGS-RGLLLL--KGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSS 57
           MGS +GL+LL  KGA+   H F         SK                R+ S+TT  SS
Sbjct: 1   MGSSKGLILLSSKGASSLSHSFAKVSSVGLHSKF---------------RSFSSTTICSS 45

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
            +PPD+  LA+ A+ISLTPH+V+EFAPKI+QVI+WFGQLQ VDL SV+P+LRA+
Sbjct: 46  TQPPDLTSLAKKAQISLTPHQVDEFAPKIQQVIEWFGQLQSVDLQSVEPSLRAE 99

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142842|ref|XP_002324749.1| predicted protein [Populus trichocarpa] gi|353558759|sp|B9INH0.1|GATC_POPTR RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|222866183|gb|EEF03314.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 69/115 (60%), Gaps = 19/115 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RAD
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRAD 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535682|ref|XP_003536373.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 59/65 (90%)

Query: 47  RNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           R+ S TTT SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ VDL+SV+P
Sbjct: 39  RSFSLTTTCSSLLPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGVDLESVEP 98

Query: 107 ALRAD 111
           ++RA+
Sbjct: 99  SIRAE 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505836|dbj|BAJ91157.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534308|dbj|BAJ89504.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 48  NCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPA 107
           + + T    +LEPPD+PRLA +ARISL+P E EEFAPKI+QV+DWFGQLQ VDL+S++P+
Sbjct: 40  SAAPTAGPGALEPPDLPRLANSARISLSPQEAEEFAPKIQQVVDWFGQLQSVDLESIEPS 99

Query: 108 LRADLSALSQRRK 120
           LRAD +A S  R+
Sbjct: 100 LRADTAAGSSLRE 112

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550886|ref|XP_002516491.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis] gi|353558760|sp|B9RRX2.1|GATC_RICCO RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|223544311|gb|EEF45832.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAD 111
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RAD
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRAD 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576181|ref|XP_003556212.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 59/65 (90%)

Query: 47  RNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           ++ S+TT  SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ +DL+SV+P
Sbjct: 39  QSFSSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGIDLESVEP 98

Query: 107 ALRAD 111
           ++RA+
Sbjct: 99  SIRAE 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119986|ref|XP_003561713.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Brachypodium distachyon]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 13/119 (10%)

Query: 2   GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPP 61
            + G+  L+ AAP  H    T+  + SS  PTR                       LEPP
Sbjct: 5   AASGIPRLRWAAPPRHTLARTQWLLLSSS-PTRTPA------------PAAAGPGGLEPP 51

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK 120
           D+PRLA++ARISL+P E EEF+PKI+QV+DWFGQLQ VDL+ ++P+LRA  +A S  R+
Sbjct: 52  DLPRLAKSARISLSPEEAEEFSPKIQQVVDWFGQLQAVDLECIEPSLRAGTAAGSSLRE 110

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:505006545	155	AT4G32915 "AT4G32915" [Arabido	0.458	0.354	0.727	3.2e-17
TIGR_CMR|APH_1113	106	APH_1113 "glutamyl-tRNA(Gln) a	0.483	0.547	0.305	8.1e-05

TAIR|locus:505006545 AT4G32915 "AT4G32915" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/55 (72%), Positives = 49/55 (89%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADL 112
             L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA++
Sbjct:    61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEM 115

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006450 "regulation of translational fidelity" evidence=IEA

TIGR_CMR|APH_1113 APH_1113 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADL-SALSQRR 119
             ++ R+++  R+ +   EV+ +  ++  V+ WFG L +VD   VDP L   + S L  R+
Sbjct:    17 ELARVSKLVRLQIPEEEVDTYCRQLGDVVSWFGMLAEVDTTDVDPVLHGGVHSVLPLRQ 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120        95   0.00091  102 3  11 22  0.37    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.59u 0.19s 8.78t   Elapsed:  00:00:01
  Total cpu time:  8.59u 0.19s 8.78t   Elapsed:  00:00:01
  Start:  Sat May 11 00:54:50 2013   End:  Sat May 11 00:54:51 2013

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D7STK2	GATC_VITVI	6, ., 3, ., 5, ., -	0.5945	0.8	0.7007	yes	no
B9INH0	GATC_POPTR	6, ., 3, ., 5, ., -	0.5217	0.8	0.6808	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
COG0721	96	COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransf	2e-08
PRK00034	95	PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransf	5e-08
TIGR00135	93	TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) a	2e-07
pfam02686	72	pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransfera	4e-06

>gnl|CDD|223793 COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

 Score = 47.6 bits (114), Expect = 2e-08
 Identities = 16/45 (35%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E+E+FA ++  ++ +  QL +VD + V+P
Sbjct: 7   EVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEP 51

Length = 96

>gnl|CDD|178810 PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP--------- 106
            ++   +V  LA+ AR+ L+  E+E+FA ++ +++D+  QL +VD + V+P         
Sbjct: 1   MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKN 60

Query: 107 ALRADLSALSQRRK 120
            LR D+   S  R+
Sbjct: 61  VLREDVVTESLPRE 74

Length = 95

>gnl|CDD|129241 TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E E FA  + +++D+  QL +VD ++V+P
Sbjct: 5   EVKHLAKLARLELSEEEAESFAGDLDEILDYVEQLNEVDTENVEP 49

Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for This model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model [Protein synthesis, tRNA aminoacylation]. Length = 93

>gnl|CDD|217186 pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransferase C subunit

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 74  LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPA---------LRAD 111
           L+  E+E+F  ++ +++D+  QL +VD + V+P          LR D
Sbjct: 1   LSEEELEKFTKQLNKILDYVEQLNEVDTEGVEPTSHPLDLTNVLRED 47

This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
COG0721	96	GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C su	99.75
TIGR00135	93	gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.75
PRK00034	95	gatC aspartyl/glutamyl-tRNA amidotransferase subun	99.75
PRK12821	477	aspartyl/glutamyl-tRNA amidotransferase subunit C-	99.69
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	99.41
PF02686	72	Glu-tRNAGln: Glu-tRNAGln amidotransferase C subuni	99.24
TIGR01827	73	gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransfer	96.69
KOG4247	175	consensus Mitochondrial DNA polymerase accessory s	95.68
PF13318	50	DUF4089: Protein of unknown function (DUF4089)	84.12

>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=1.9e-18  Score=121.92  Aligned_cols=64  Identities=27%  Similarity=0.506  Sum_probs=60.2

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        56 m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      |.|++++|+|||+||||+++|+|++.|..+|++|++||++|++|||+||+||+||.+.. +.+|+
T Consensus         1 ~~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~-~~lRe   64 (96)
T COG0721           1 MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVS-NVLRE   64 (96)
T ss_pred             CccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccc-ccccC
Confidence            68999999999999999999999999999999999999999999999999999999887 55553

>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit

Probab=99.75  E-value=3.2e-18  Score=118.18  Aligned_cols=62  Identities=27%  Similarity=0.471  Sum_probs=58.7

Q ss_pred             CChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        58 I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      |++++|+|||+||||+|+++|++.+.++|++|++||++|++|||+||+||+|+.+.. +.||+
T Consensus         1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~vdt~~v~p~~~~~~~~-~~lRe   62 (93)
T TIGR00135         1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEIS-NVLRE   62 (93)
T ss_pred             CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccCccccc-cCCCC
Confidence            689999999999999999999999999999999999999999999999999998776 67774

This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.

>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

Probab=99.75  E-value=3.8e-18  Score=117.72  Aligned_cols=64  Identities=28%  Similarity=0.485  Sum_probs=60.6

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        56 m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      |+|++++|++||+||||+++++|++.+.++|++|++||++|+++||++|+||+|+.+ ..+.||+
T Consensus         1 M~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~~~~~l~~vd~~~vep~~~~~~-~~~~lRe   64 (95)
T PRK00034          1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLD-MKNVLRE   64 (95)
T ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccCccc-ccCCCCC
Confidence            689999999999999999999999999999999999999999999999999999987 4677774

>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional

Probab=99.69  E-value=4.5e-17  Score=140.69  Aligned_cols=65  Identities=20%  Similarity=0.339  Sum_probs=62.2

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        56 m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      +++++|+|+|+|+||||+++|||++++.+||++|++|+|+|++|||+|||||.||.+...+++|+
T Consensus       387 ~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLRE  451 (477)
T PRK12821        387 QQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRK  451 (477)
T ss_pred             ccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcccCcccccCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999777778885

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=99.41  E-value=3.6e-13  Score=121.51  Aligned_cols=61  Identities=15%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccC
Q 033373           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRR  119 (120)
Q Consensus        57 ~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r  119 (120)
                      +=.+++|+|||+||||+|+|+|++.++++|++||+||++|++||| +|+||+||++..+ .+|
T Consensus       611 ~~~~~~V~~iA~LARL~l~eeE~~~~~~~L~~IL~~ve~L~evdt-~VeP~~~~~~~~~-~lR  671 (706)
T PRK12820        611 AEKEDLIDHLSWVSRIGFAEAERAAIESALADAEELAAQLEDIAC-DEEPLFSPAPAAN-RMG  671 (706)
T ss_pred             ccchHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCcccccc-CCC
Confidence            568999999999999999999999999999999999999999999 5999999987665 555

>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation

Probab=99.24  E-value=6.4e-12  Score=82.12  Aligned_cols=46  Identities=26%  Similarity=0.499  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           74 LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        74 LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      |+|+|++.+.++|++|++||++|++|||+||+||+|+.+ ..+.||.
T Consensus         1 l~eeE~~~~~~~l~~il~~~~~l~~vdt~~v~p~~~~~~-~~~~lRe   46 (72)
T PF02686_consen    1 LTEEELEKLTKQLNDILDYVEKLQEVDTEGVEPMYHPVE-MSNPLRE   46 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTTGGGS--TT----S-SS--SS--EB-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccccccc-ccCCCCC
Confidence            689999999999999999999999999999999999987 6677773

The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....

>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative

Probab=96.69  E-value=0.0019  Score=43.72  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=24.7

Q ss_pred             HHHHHHHHH-HHHHhccCCCCCCCCccccccccccccC
Q 033373           83 APKIRQVID-WFGQLQDVDLDSVDPALRADLSALSQRR  119 (120)
Q Consensus        83 ~~qLn~IL~-~~d~L~eVDTe~VePm~hp~e~~~~~~r  119 (120)
                      .++-..|++ |-++|++||  ||+||+|+.+..+ .||
T Consensus         3 ~~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n-~lR   37 (73)
T TIGR01827         3 LKEAEEILEEFSERLEDVD--EEEETYYISDGSN-KFR   37 (73)
T ss_pred             HHHHHHHHHHHHHHHHccC--CCCCccccccccc-CCC
Confidence            345555654 348899999  9999999986555 555

This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.

>KOG4247 consensus Mitochondrial DNA polymerase accessory subunit [Replication, recombination and repair]

Probab=95.68  E-value=0.019  Score=43.73  Aligned_cols=60  Identities=13%  Similarity=0.218  Sum_probs=51.2

Q ss_pred             CCCCCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccccccc
Q 033373           52 TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSA  114 (120)
Q Consensus        52 ~~~~m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~  114 (120)
                      .+.|.+|+.+.+.|+..|+-..++.|+.   ...|..-+.....|.-||++||+||..+.+..
T Consensus        42 lspmpqidaklinhlerlslvrfdseqa---vanlrssirvakrlelvdvegvepmhtvwedq  101 (175)
T KOG4247|consen   42 LSPMPQIDAKLINHLERLSLVRFDSEQA---VANLRSSIRVAKRLELVDVEGVEPMHTVWEDQ  101 (175)
T ss_pred             cCCcchhhHHHHHHHHhhhheeecHHHH---HHHHHHHHhHHhheeeeeccCccchhhhcccc
Confidence            4577889999999999999999988765   56777888888999999999999998776644

>PF13318 DUF4089: Protein of unknown function (DUF4089)

Probab=84.12  E-value=5.1  Score=25.20  Aligned_cols=41  Identities=10%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 033373           63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS  103 (120)
Q Consensus        63 V~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~  103 (120)
                      |...+.+--|.|+|+-.+.+..+|..|..+.+.+.+...++
T Consensus         2 v~~~a~llgL~l~~~~r~~V~~n~~ri~~mA~~v~~fpL~~   42 (50)
T PF13318_consen    2 VDQMAALLGLPLDEEWRPGVVANFERIAAMAQLVMEFPLPD   42 (50)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            56789999999999999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	7e-11
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	9e-11
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	7e-10

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 92

 Score = 53.3 bits (129), Expect = 7e-11
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPA---LRAD 111
            L P  + +L   A+I L+P E       +++++D+   L  V+    + A   LR D
Sbjct: 5   ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEEALGRLRED 62

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C Length = 100

 Score = 53.3 bits (129), Expect = 9e-11
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP--------- 106
           + +   +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P         
Sbjct: 2   TKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQN 61

Query: 107 ALRAD 111
            LR D
Sbjct: 62  VLRED 66

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C* Length = 94

 Score = 51.0 bits (123), Expect = 7e-10
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP--------ALRAD 111
            V ++A+ AR+ L   E+E F  ++  ++D+  QL+++D ++V+P         +R D
Sbjct: 6   WVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEETPMRED 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	99.84
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	99.81
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	99.73
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.62

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C

Probab=99.84  E-value=5e-21  Score=134.04  Aligned_cols=65  Identities=23%  Similarity=0.377  Sum_probs=59.7

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        55 ~m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      ||+|++++|+|||+||||+|+|+|++.++++|++|++||++|++|||+||+||+||++..+ .||.
T Consensus         1 Mm~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~~-~lRe   65 (100)
T 3ip4_C            1 MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQN-VLRE   65 (100)
T ss_dssp             --CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCC-CCBC
T ss_pred             CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccC-CCCC
Confidence            7899999999999999999999999999999999999999999999999999999998764 5663

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*

Probab=99.81  E-value=4.6e-20  Score=127.76  Aligned_cols=62  Identities=24%  Similarity=0.477  Sum_probs=58.7

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        57 ~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      +|++++|+|||+||||+|+|+|++.|+++|++|++||++|++|||+||+||+||++.  +.+|.
T Consensus         1 ~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~--~~lRe   62 (94)
T 3h0l_C            1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEE--TPMRE   62 (94)
T ss_dssp             -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTTGGGSCCTTCCCCCCCCSS--CCCBC
T ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccCcccc--cCCCC
Confidence            489999999999999999999999999999999999999999999999999999987  77774

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.73  E-value=5e-18  Score=117.35  Aligned_cols=51  Identities=22%  Similarity=0.430  Sum_probs=49.8

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 033373           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP  106 (120)
Q Consensus        56 m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VeP  106 (120)
                      |+|++++|+|||+||||+|+|+|++.++++|++|++||++|++|||+||+|
T Consensus         4 M~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP   54 (92)
T 3kfu_G            4 MELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE   54 (92)
T ss_dssp             -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCC
T ss_pred             CccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            789999999999999999999999999999999999999999999999999

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.62  E-value=2e-16  Score=138.23  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=60.0

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        55 ~m~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      ||+||+++|+|||+||||+|+|+|++.+++||++|++||++|++|||+||+||+||++..+ .+|.
T Consensus         2 ~m~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~Vep~~~~~~~~~-~lRe   66 (592)
T 3al0_C            2 GIKVTKDLVLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSA-KLRK   66 (592)
T ss_dssp             --CCCSTHHHHHHTTTTCCCCSSSHHHHHHHHHHHHHHHTTTCSSCCSSCCCCSCCSCSCC-CCBC
T ss_pred             CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcCcccccccc-cCCC
Confidence            5889999999999999999999999999999999999999999999999999999998876 4663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d2f2ac1	92	a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C	5e-11

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]} Length = 92

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

 Score = 52.8 bits (127), Expect = 5e-11
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P
Sbjct: 6   EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d2f2ac1	92	Glu-tRNAGln amidotransferase C subunit, GatC {Stap	99.77

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.77  E-value=2.2e-19  Score=121.49  Aligned_cols=63  Identities=24%  Similarity=0.410  Sum_probs=59.2

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccccccccccCC
Q 033373           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRADLSALSQRRK  120 (120)
Q Consensus        57 ~I~keeV~kLA~LARL~LsEeEle~~~~qLn~IL~~~d~L~eVDTe~VePm~hp~e~~~~~~r~  120 (120)
                      +|++++|+|||+||||+|+|+|++.+.++|++||+||++|++|||+||+||+||.+.. +.+|+
T Consensus         1 KIs~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~~~~~L~~vDt~~vep~~~~~~~~-~~lRe   63 (92)
T d2f2ac1           1 KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQ-NVLRE   63 (92)
T ss_dssp             CCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCSSCCC-CCCBC
T ss_pred             CCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCccccccc-cCCCC
Confidence            5899999999999999999999999999999999999999999999999999998865 46774