Query 033374
Match_columns 120
No_of_seqs 126 out of 1118
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3.7E-44 8E-49 248.1 11.5 110 4-119 6-119 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.5E-44 3.3E-49 245.9 9.1 110 4-119 2-114 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 6.9E-42 1.5E-46 228.1 9.2 113 1-119 1-117 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.2E-40 6.9E-45 229.5 13.5 112 1-119 1-115 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.1E-39 6.7E-44 223.5 13.0 108 5-118 3-113 (147)
6 KOG0421 Ubiquitin-protein liga 100.0 5.4E-39 1.2E-43 217.2 6.0 111 4-120 30-143 (175)
7 KOG0418 Ubiquitin-protein liga 100.0 2.9E-38 6.2E-43 221.7 9.3 114 1-119 1-120 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 1E-36 2.3E-41 208.4 10.2 109 5-119 10-132 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 9.1E-36 2E-40 204.0 8.7 106 7-118 1-111 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 2E-35 4.4E-40 197.4 8.9 113 1-119 1-131 (165)
11 KOG0424 Ubiquitin-protein liga 100.0 1.2E-34 2.6E-39 195.7 10.1 112 1-118 1-123 (158)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 9.6E-34 2.1E-38 194.3 12.1 107 6-118 2-112 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.8E-33 8.1E-38 192.2 11.5 107 6-118 1-112 (145)
14 KOG0416 Ubiquitin-protein liga 100.0 2.6E-32 5.6E-37 189.0 5.6 104 1-104 1-104 (189)
15 KOG0427 Ubiquitin conjugating 100.0 2.1E-31 4.6E-36 177.8 9.3 108 4-118 16-127 (161)
16 KOG0422 Ubiquitin-protein liga 100.0 4.5E-31 9.9E-36 177.6 8.4 108 4-118 3-115 (153)
17 KOG0420 Ubiquitin-protein liga 100.0 1.7E-29 3.8E-34 175.2 6.7 109 3-118 28-141 (184)
18 KOG0894 Ubiquitin-protein liga 100.0 1.8E-28 4E-33 175.5 10.6 109 1-118 1-118 (244)
19 KOG0423 Ubiquitin-protein liga 99.9 5.2E-28 1.1E-32 168.3 4.1 109 4-118 11-122 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 1.3E-22 2.8E-27 148.1 8.0 106 3-117 11-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.7 4.6E-18 1E-22 143.3 5.3 98 14-117 865-971 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 1.4E-16 3.1E-21 134.4 10.0 109 4-118 283-405 (1101)
23 KOG0896 Ubiquitin-conjugating 99.6 1.5E-15 3.3E-20 102.0 6.7 112 4-120 6-126 (138)
24 KOG0429 Ubiquitin-conjugating 99.6 5.4E-15 1.2E-19 106.8 8.5 105 8-118 24-134 (258)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 2.6E-08 5.5E-13 67.8 4.9 69 45-119 34-108 (133)
26 KOG0897 Predicted ubiquitin-co 98.7 6.3E-09 1.4E-13 68.4 1.7 61 49-115 13-75 (122)
27 PF05743 UEV: UEV domain; Int 98.3 9.7E-07 2.1E-11 59.2 4.3 86 26-118 25-118 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.0 0.005 1.1E-07 42.4 7.1 93 5-103 26-135 (161)
29 KOG2391 Vacuolar sorting prote 96.9 0.0061 1.3E-07 47.4 7.4 67 36-104 55-129 (365)
30 PF14462 Prok-E2_E: Prokaryoti 96.3 0.05 1.1E-06 36.6 8.2 94 14-117 8-121 (122)
31 PF05773 RWD: RWD domain; Int 95.7 0.027 5.8E-07 36.1 4.7 48 25-72 25-74 (113)
32 smart00591 RWD domain in RING 95.0 0.27 5.9E-06 31.0 7.7 27 45-71 39-65 (107)
33 PF14457 Prok-E2_A: Prokaryoti 94.2 0.039 8.5E-07 38.8 2.4 60 51-116 57-125 (162)
34 KOG3357 Uncharacterized conser 93.1 0.088 1.9E-06 35.8 2.5 94 5-102 29-137 (167)
35 KOG0309 Conserved WD40 repeat- 88.7 2.8 6E-05 36.5 7.7 64 7-71 424-491 (1081)
36 PF09765 WD-3: WD-repeat regio 83.8 1.4 3.1E-05 33.8 3.4 85 6-116 102-187 (291)
37 KOG4018 Uncharacterized conser 76.0 14 0.00031 27.2 6.3 22 48-69 50-71 (215)
38 PF14455 Metal_CEHH: Predicted 70.7 25 0.00054 24.8 6.2 83 31-117 38-122 (177)
39 PF06113 BRE: Brain and reprod 69.2 8 0.00017 30.3 3.9 27 47-74 306-332 (333)
40 PF03366 YEATS: YEATS family; 68.2 22 0.00048 22.1 5.1 42 30-73 2-43 (84)
41 PF06113 BRE: Brain and reprod 59.1 14 0.0003 29.0 3.5 43 28-76 52-95 (333)
42 cd00421 intradiol_dioxygenase 58.6 18 0.0004 24.6 3.8 26 45-70 64-90 (146)
43 cd03457 intradiol_dioxygenase_ 50.9 28 0.00061 25.0 3.8 26 45-70 85-110 (188)
44 COG3866 PelB Pectate lyase [Ca 49.6 30 0.00066 27.1 4.0 40 30-70 197-240 (345)
45 smart00340 HALZ homeobox assoc 48.0 14 0.00029 20.3 1.4 13 4-16 20-32 (44)
46 cd03459 3,4-PCD Protocatechuat 45.7 39 0.00085 23.5 3.8 25 46-70 72-101 (158)
47 PF00845 Gemini_BL1: Geminivir 36.8 71 0.0015 24.2 4.1 45 28-73 101-154 (276)
48 KOG3203 Mitochondrial/chloropl 35.3 20 0.00044 25.1 1.0 14 71-86 50-63 (165)
49 KOG4445 Uncharacterized conser 35.0 55 0.0012 25.6 3.4 25 47-71 45-69 (368)
50 cd05845 Ig2_L1-CAM_like Second 33.8 1.2E+02 0.0026 19.1 4.4 26 44-71 16-41 (95)
51 KOG0177 20S proteasome, regula 33.8 42 0.00092 24.4 2.5 24 81-104 135-158 (200)
52 TIGR02423 protocat_alph protoc 31.5 81 0.0018 22.7 3.7 24 46-69 96-124 (193)
53 PF04881 Adeno_GP19K: Adenovir 30.4 46 0.001 22.7 2.1 29 27-55 45-74 (139)
54 KOG3696 Aspartyl beta-hydroxyl 30.1 44 0.00095 26.2 2.2 22 57-78 303-324 (334)
55 cd03463 3,4-PCD_alpha Protocat 29.9 92 0.002 22.3 3.7 24 46-69 92-120 (185)
56 PF11745 DUF3304: Protein of u 29.0 31 0.00067 22.7 1.1 21 80-100 49-69 (118)
57 PF14460 Prok-E2_D: Prokaryoti 26.5 33 0.00071 24.1 0.9 14 75-89 98-111 (175)
58 PF09458 H_lectin: H-type lect 24.5 1E+02 0.0022 17.8 2.7 20 49-69 3-22 (72)
59 KOG1047 Bifunctional leukotrie 23.5 87 0.0019 26.6 2.9 29 42-71 248-279 (613)
60 COG2819 Predicted hydrolase of 22.7 1.5E+02 0.0033 22.6 3.9 30 41-70 15-46 (264)
61 PF00779 BTK: BTK motif; Inte 22.4 30 0.00064 17.6 0.0 16 72-88 2-18 (32)
62 PF13950 Epimerase_Csub: UDP-g 20.9 36 0.00077 19.8 0.2 13 92-104 37-49 (62)
63 TIGR02439 catechol_proteo cate 20.5 1.6E+02 0.0035 22.6 3.7 25 46-70 180-222 (285)
64 TIGR03737 PRTRC_B PRTRC system 20.1 1.2E+02 0.0027 22.5 2.9 14 75-89 139-152 (228)
65 PF10319 7TM_GPCR_Srj: Serpent 20.1 69 0.0015 25.0 1.6 15 1-15 233-247 (310)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-44 Score=248.06 Aligned_cols=110 Identities=35% Similarity=0.767 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~~~---~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+||++|++++ +++++++.+.++ |+++|++.|.||++||||||+|++.|.||++||++||+|+|.++|||||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~- 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD- 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-
Confidence 799999999755 457999999988 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+|+|+++|+|++++++||+ +|++||.++.
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILl-----sl~slL~~PN 119 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILL-----SLQSLLLSPN 119 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHH-----HHHHHHcCCC
Confidence 7999999999999999999999999 9999999853
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=245.94 Aligned_cols=110 Identities=33% Similarity=0.742 Sum_probs=104.3
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||.||++ +.+++|+++.++++|+++|+++|.||.|||||||+|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 3579999995 55678999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.|+||+|+|+++|+|+++|++||+ +|++||++.+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vll-----sI~sLL~~Pn 114 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLL-----SICSLLSDPN 114 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHH-----HHHHHhcCCC
Confidence 999999999999999999999999 9999998764
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-42 Score=228.05 Aligned_cols=113 Identities=31% Similarity=0.674 Sum_probs=105.8
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
|++ |.+||++|++ +.++.|++..|.++|+++|.+.|+||.+|||+||+|++.|.|+++||++||.|+|++..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 788 5677777775 556789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|| .+|.+|+|+|+..|+|.|++.+||+ +||+||.+..
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILt-----siQslL~dPn 117 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILT-----SIQSLLNDPN 117 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHH-----HHHHHhcCCC
Confidence 99 7999999999999999999999999 9999998764
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.2e-40 Score=229.49 Aligned_cols=112 Identities=35% Similarity=0.695 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcc
Q 033374 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 1 Ms~~~kRl~~el~~~---~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 77 (120)
|+ +.|||++|++++ +.+|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 45 689999999754 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 78 DELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+ .+|.||+++|.++|+|++|+++||+ +|++||.+..
T Consensus 80 ~-~~G~iCl~iL~~~W~p~~ti~~iL~-----~i~~ll~~P~ 115 (152)
T PTZ00390 80 D-KLGRICLDILKDKWSPALQIRTVLL-----SIQALLSAPE 115 (152)
T ss_pred C-CCCeEECccCcccCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 9 5999999999999999999999999 9999998753
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.1e-39 Score=223.47 Aligned_cols=108 Identities=31% Similarity=0.710 Sum_probs=102.2
Q ss_pred HHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCC
Q 033374 5 SKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 5 ~kRl~~el~~~---~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 81 (120)
.+||++|++++ +.+++++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+ .+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CC
Confidence 58999888644 568999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 82 GSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|.||+++|.++|+|++|+++||+ +|++||.+.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~-----~i~~ll~~P 113 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLL-----SISSLLTDP 113 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 99999999999999999999999 999999875
No 6
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-39 Score=217.16 Aligned_cols=111 Identities=35% Similarity=0.740 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCC---CCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLMKLMM---SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~~~~~---~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
..|||++||+.+.. +||+++|++||++.|..+|.||++|+|+|-.|++++.||.+||++||.|+|.|++|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 58999999998875 6999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~~ 120 (120)
.|.||+|+|++.|+..|.++.||+ +||+||-+..|
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILL-----SiQSLLGEPNn 143 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILL-----SIQSLLGEPNN 143 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHH-----HHHHHhCCCCC
Confidence 999999999999999999999999 99999988765
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-38 Score=221.66 Aligned_cols=114 Identities=30% Similarity=0.735 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHhcC------CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCccc
Q 033374 1 MSSPSKRREMDLMKLM------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 1 Ms~~~kRl~~el~~~~------~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (120)
|+.+.+|+++|+++.+ ..||.+...++|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7778899999887443 4689999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 75 PNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 75 pnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|||...+|.||+|+|+++|++++|++++|+ +||++|++..
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLi-----slQalL~~pE 120 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLI-----SLQALLCAPE 120 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHH-----HHHHHHcCCC
Confidence 999989999999999999999999999999 9999998753
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=208.39 Aligned_cols=109 Identities=29% Similarity=0.668 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033374 5 SKRREMDLMKLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 5 ~kRl~~el~~~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~ 83 (120)
.+|-++||++.+.+|+++...++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.+++|||||| .+|+
T Consensus 10 l~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy-~~G~ 88 (171)
T KOG0425|consen 10 LLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY-EDGD 88 (171)
T ss_pred HHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-CCCC
Confidence 44555677788889999988775 999999999999999999999999999999999999999999999999999 6999
Q ss_pred EEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 84 VCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 84 icl~~l~-------------~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+|+++|. |.|.|.+|+++||+ +|.+||++..
T Consensus 89 vCISILH~pgdD~~gyE~~~erW~Pv~tvetIll-----SiIsmL~~PN 132 (171)
T KOG0425|consen 89 VCISILHPPGDDPSGYELPSERWLPVQTVETILL-----SIISMLNSPN 132 (171)
T ss_pred EEEEeecCCCCCcccCCChhhccCCccchhHhHH-----HHHHHHcCCC
Confidence 9999993 57999999999999 9999999864
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.1e-36 Score=204.03 Aligned_cols=106 Identities=35% Similarity=0.759 Sum_probs=94.0
Q ss_pred HHHHHHH---hcCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCC
Q 033374 7 RREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 7 Rl~~el~---~~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G 82 (120)
||++|++ +.++.|+.+.+.++ |+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 7777775 55788999999987 999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCC-CCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 83 SVCLDVINQ-TWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~-~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+||+++|.. .|+|.+++.+||. +|+++|.+.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~-----~i~~ll~~p 111 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILL-----SIQSLLSEP 111 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHH-----HHHHHHHST
T ss_pred cchhhhhhcccCCcccccccHHH-----HHHHHHhCC
Confidence 999999985 5999999999999 999999765
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=197.35 Aligned_cols=113 Identities=27% Similarity=0.605 Sum_probs=103.9
Q ss_pred CCC-HHHHHHHHHHhc---CCCCcEEEec-CCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 1 MSS-PSKRREMDLMKL---MMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 1 Ms~-~~kRl~~el~~~---~~~~i~~~~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
|+. +.|||++|++++ +++||.+.+. +||+++|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 444 899999999755 5789999886 57999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 76 NVDELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nv~~~~G~icl~~l~-------------~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||+ .+|+||+++|. |.|+|.++++.||+ ++-+||++..
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILL-----SV~SMLaEPN 131 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILL-----SVVSMLAEPN 131 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHH-----HHHHHHcCCC
Confidence 999 79999999983 68999999999999 9999999865
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=195.75 Aligned_cols=112 Identities=29% Similarity=0.566 Sum_probs=101.6
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecC-----CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~-----~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +..||+.|-+ +.-+-|+++.|.. .|+..|.+.|.|++||+||||.|++++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 555 6778887775 5566799998864 379999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCCC--CCCCCChhhccccCCHHHHHHHHhcc
Q 033374 72 IYHPNVDELSGSVCLDVINQT--WSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 72 i~Hpnv~~~~G~icl~~l~~~--W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|||||| .+|.|||++|.++ |+|+.||..||+ +||+||.+.
T Consensus 81 l~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~-----gIqdLL~~P 123 (158)
T KOG0424|consen 81 LFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILL-----GIQDLLDTP 123 (158)
T ss_pred CcCCCcC-CCCcEehhhhccccCCCchhhHHHHHH-----HHHHHhcCC
Confidence 9999999 6999999999865 999999999999 999999875
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=9.6e-34 Score=194.30 Aligned_cols=107 Identities=35% Similarity=0.787 Sum_probs=99.8
Q ss_pred HHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCC
Q 033374 6 KRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 6 kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G 82 (120)
|||++|++ +.+..|+++.+.++|+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 57777665 55667999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCCC-CCCCCChhhccccCCHHHHHHHHhcc
Q 033374 83 SVCLDVINQT-WSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~~-W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.||+++|..+ |+|++++++||. +|+++|.+.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~-----~i~~~l~~p 112 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLL-----SLQSLLNEP 112 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHH-----HHHHHHhCC
Confidence 9999999877 999999999999 999999865
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.8e-33 Score=192.16 Aligned_cols=107 Identities=35% Similarity=0.729 Sum_probs=98.8
Q ss_pred HHHHHHHH---hcCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCC
Q 033374 6 KRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 6 kRl~~el~---~~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 81 (120)
+||++|++ +....|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+ .+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CC
Confidence 47777775 55677999888776 999999999999999999999999999999999999999999999999999 59
Q ss_pred CeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 82 GSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 82 G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|.+|+++|. ++|+|++++++||. +|+++|.+.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~-----~i~~~l~~p 112 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLL-----SIQSLLSEP 112 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 999999998 89999999999999 999999764
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-32 Score=189.02 Aligned_cols=104 Identities=71% Similarity=1.273 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 1 Ms~~~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
||+..||+..|++++...+..+...++++.+++|.+.||++|||+||++++++.+|++||++.|.|.|.++||||||+..
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccCCCCCCCCCCChhhccc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILF 104 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~ 104 (120)
+|.||+|.++..|+|.+.+..|+-
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfe 104 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFE 104 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999988875
No 15
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=177.84 Aligned_cols=108 Identities=30% Similarity=0.659 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCc-ccCcccC
Q 033374 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~~~---~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~~ 79 (120)
+.+||+|||.+. ++.|+... ..||+.+|.+-+.|.+||.|+|.+|.+.+.||+.||+..|+|.|..++ .||+||
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 689999999644 56798777 778999999999999999999999999999999999999999999986 799999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|.||+++|.++|+|++++.+|++ +|.+||+|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvCl-----SIlSMLSSs 127 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCL-----SILSMLSSS 127 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHH-----HHHHHHccC
Confidence 7999999999999999999999999 999999875
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-31 Score=177.61 Aligned_cols=108 Identities=30% Similarity=0.672 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCCCcE----EEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 4 PSKRREMDLMKLMMSDYK----VEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~~~~~~~i~----~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+|+.|||..+...+.. +..++++++.|.+.|. |++-||..|.|+++|.||.+|||+||+|+|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 789999999866654432 4556789999999998 99999999999999999999999999999999999999995
Q ss_pred CCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 80 LSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.|.+|+.++. |+|+|+.+.++||+ ++..++.+.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlq-----aLi~liN~P 115 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQ-----ALIALINDP 115 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHH-----HHHHHhcCC
Confidence 7999999984 89999999999999 999998764
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=175.19 Aligned_cols=109 Identities=29% Similarity=0.706 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHhcC-CCCcEEEec--CCCce--EEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcc
Q 033374 3 SPSKRREMDLMKLM-MSDYKVEMI--NDGMQ--EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 3 ~~~kRl~~el~~~~-~~~i~~~~~--~~d~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 77 (120)
.+.-|+++|+.++. ++++++... .+++. ++.++|. |+++-|+||.|.|.+.+|+.||+.||+|+|.|+||||||
T Consensus 28 ~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNI 106 (184)
T KOG0420|consen 28 AALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNI 106 (184)
T ss_pred HHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCc
Confidence 36779999887664 456654332 23444 5999998 999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 78 DELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
| .+|.||+++|+++|+|..+|.+|+. +++.|+.+.
T Consensus 107 d-~~GnVCLnILRedW~P~lnL~sIi~-----GL~~LF~ep 141 (184)
T KOG0420|consen 107 D-LDGNVCLNILREDWRPVLNLNSIIY-----GLQFLFLEP 141 (184)
T ss_pred C-CcchHHHHHHHhcCccccchHHHHH-----HHHHHhccC
Confidence 9 6999999999999999999999999 999998764
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-28 Score=175.53 Aligned_cols=109 Identities=23% Similarity=0.507 Sum_probs=97.7
Q ss_pred CCC--HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 1 MSS--PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 1 Ms~--~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
|++ +.|||+||++ +++.+.|.+.|..+|+.+||.++.||+||||+||.|+..|.||++||++||.|+++| |
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----P 76 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----P 76 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----C
Confidence 555 7999999996 667789999999999999999999999999999999999999999999999999999 4
Q ss_pred ccc-CCCCeEEccCCC---CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 76 NVD-ELSGSVCLDVIN---QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 76 nv~-~~~G~icl~~l~---~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|-. ..+-++|+++-+ +.|+|.+++.+||. ++.++|.+.
T Consensus 77 NGRFktntRLCLSiSDfHPdsWNP~WsVStILt-----GLlSFM~e~ 118 (244)
T KOG0894|consen 77 NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILT-----GLLSFMTED 118 (244)
T ss_pred CCceecCceEEEeccccCcCcCCCcccHHHHHH-----HHHHHHhcC
Confidence 432 246689998864 89999999999999 999999875
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-28 Score=168.32 Aligned_cols=109 Identities=25% Similarity=0.564 Sum_probs=101.4
Q ss_pred HHHHHHHHHHh---cCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~~---~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
..|.+.+|++. .++.||.+.+.++|+....+.|.||.||||++|.|++.+.+..|||.+||+-.|.|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 36777788864 4678999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|.||.+.|+.+|+|...|+.||+ .|..||...
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLl-----tikCLLI~P 122 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLL-----TIKCLLIEP 122 (223)
T ss_pred CceehhhhhhcccCcccchhhHhh-----hhheeeecC
Confidence 999999999999999999999999 998887654
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-22 Score=148.15 Aligned_cols=106 Identities=26% Similarity=0.600 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHhcCC--CCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc-C
Q 033374 3 SPSKRREMDLMKLMM--SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD-E 79 (120)
Q Consensus 3 ~~~kRl~~el~~~~~--~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~-~ 79 (120)
.+.|||+||.+++.. ..+.+.+.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+| ||-. +
T Consensus 11 paVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGRFE 86 (314)
T KOG0428|consen 11 PAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGRFE 86 (314)
T ss_pred HHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCcee
Confidence 378999999976654 46778999999999999999999999999999999999999999999999999 5542 3
Q ss_pred CCCeEEccCC---CCCCCCCCChhhccccCCHHHHHHHHhc
Q 033374 80 LSGSVCLDVI---NQTWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 80 ~~G~icl~~l---~~~W~p~~ti~~vl~~~~~~~i~~ll~~ 117 (120)
.+.+||+++- .|.|.|+++|+..|+ +|..+|-+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALl-----AlIgFmPt 122 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALL-----ALIGFMPT 122 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHH-----HHHccccC
Confidence 5668999986 489999999999999 99888743
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.6e-18 Score=143.31 Aligned_cols=98 Identities=23% Similarity=0.463 Sum_probs=90.0
Q ss_pred hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC--cccCcccCCCCeEEccCCC-
Q 033374 14 KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPNVDELSGSVCLDVIN- 90 (120)
Q Consensus 14 ~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~~~G~icl~~l~- 90 (120)
...+.||.+...++.+..+.+.|.||.||||.+|.|.|++.||++||..||.+...+. .++||.| .+|+||+++|.
T Consensus 865 ~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly-~~g~vc~s~l~t 943 (1101)
T KOG0895|consen 865 LSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNT 943 (1101)
T ss_pred ccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc-cccceehhhhcc
Confidence 3356799999999999999999999999999999999999999999999999999984 6899999 59999999994
Q ss_pred ------CCCCCCCChhhccccCCHHHHHHHHhc
Q 033374 91 ------QTWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 91 ------~~W~p~~ti~~vl~~~~~~~i~~ll~~ 117 (120)
|-|+|.-+|..||+ +||.|+..
T Consensus 944 w~g~~~e~w~~~s~~lq~l~-----s~q~l~l~ 971 (1101)
T KOG0895|consen 944 WHGRGNEVWNPSSSILQVLV-----SIQGLVLN 971 (1101)
T ss_pred ccCCCccccCcchhHHHHHH-----Hhhhhhcc
Confidence 67999999999999 99999654
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=134.42 Aligned_cols=109 Identities=23% Similarity=0.433 Sum_probs=100.6
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC---cccCcc
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNV 77 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpnv 77 (120)
..+|+++|++ +..++|+.+.+.+.++...++.|.||.|+||++|+|.|+|.||..||..||.+++.+. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 4689999996 6677899999999999999999999999999999999999999999999999999986 689999
Q ss_pred cCCCCeEEccCCC-------CCCCCC-CChhhccccCCHHHHHHHHhcc
Q 033374 78 DELSGSVCLDVIN-------QTWSPM-FGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 78 ~~~~G~icl~~l~-------~~W~p~-~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
| .+|+||+++|- +.|+|. .+|.++|. +||.++..+
T Consensus 363 Y-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~-----sIQ~Li~~e 405 (1101)
T KOG0895|consen 363 Y-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLE-----SIQGLILNE 405 (1101)
T ss_pred c-cCceEEeeeeeecccccccCCCccccchhhhhh-----hhhhhhccc
Confidence 9 59999999982 689999 89999999 999999876
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.5e-15 Score=101.99 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCC---C-CcEEEecC-C--CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 4 PSKRREMDLMKLMM---S-DYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 4 ~~kRl~~el~~~~~---~-~i~~~~~~-~--d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
+.-||++|+.+-.. + .++.-..+ + -+..|...|.||+.|+||+.+|.++|...++||..||.|+|.+++--..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 56789999976643 2 23333333 2 3779999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCC--CCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033374 77 VDELSGSVCLDVI--NQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 77 v~~~~G~icl~~l--~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~~ 120 (120)
|+..+|.+.-..+ ..+|+-.++++.||. +++.+|++..|
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~-----~lr~~m~~~eN 126 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLG-----QLRKEMMSKEN 126 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHH-----hhhHHHHHHHh
Confidence 9977888876444 378999999999999 99987766543
No 24
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-15 Score=106.79 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=90.1
Q ss_pred HHHHH---HhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCC--CCCeEEEecCcccCcccCCCC
Q 033374 8 REMDL---MKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPY--KSPSIGFVNKIYHPNVDELSG 82 (120)
Q Consensus 8 l~~el---~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~~~G 82 (120)
|+.|+ .+.+.+||++.|+-.+-+.|.++|+ -..+.|.||+|+|+|.+|++||. +-|+|.|.+.++||+|.+.++
T Consensus 24 llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~sk 102 (258)
T KOG0429|consen 24 LLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSK 102 (258)
T ss_pred HHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCcc
Confidence 44454 3677899999999999999999999 56778999999999999999994 479999999999999999999
Q ss_pred eEEccCCCCCCCCC-CChhhccccCCHHHHHHHHhcc
Q 033374 83 SVCLDVINQTWSPM-FGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 83 ~icl~~l~~~W~p~-~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|++-.-..|+.. ..|-.||. -+|..+.+.
T Consensus 103 eLdl~raf~eWRk~ehhiwqvL~-----ylqriF~dp 134 (258)
T KOG0429|consen 103 ELDLNRAFPEWRKEEHHIWQVLV-----YLQRIFYDP 134 (258)
T ss_pred ceeHhhhhhhhhccccHHHHHHH-----HHHHHhcCc
Confidence 99998765559655 47999999 888887653
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.70 E-value=2.6e-08 Score=67.77 Aligned_cols=69 Identities=25% Similarity=0.570 Sum_probs=61.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecCc---ccCcccCCCCeEEc---cCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 45 QGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDELSGSVCL---DVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~~G~icl---~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.|+.+.+.|.||++||..||.|....+- +-|||+ .+|.+|+ ...-+.|.|.-++..+|. +.+.+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~-----~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLE-----RAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHH-----HHHHHHHHh
Confidence 6899999999999999999999988654 689999 5999999 777789999999999999 888888754
Q ss_pred C
Q 033374 119 Y 119 (120)
Q Consensus 119 ~ 119 (120)
.
T Consensus 108 ~ 108 (133)
T PF14461_consen 108 L 108 (133)
T ss_pred h
Confidence 3
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.3e-09 Score=68.40 Aligned_cols=61 Identities=20% Similarity=0.442 Sum_probs=49.2
Q ss_pred EEEEEeCCCCCCCCCCeEEEecCccc-CcccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHH
Q 033374 49 WKIRVELPDAYPYKSPSIGFVNKIYH-PNVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQML 115 (120)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~H-pnv~~~~G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll 115 (120)
.-+.+.|+++||+.||.++...|+-. --|- .+|.||+.+|. ++|+.+++++.+++ +|-.++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl-~ggAIcmellt~qgwssay~Ve~vi~-----qiaatl 75 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVL-EGGAICMELLTKQGWSSAYEVERVIM-----QIAATL 75 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEe-cchhhHHHHHccccccchhhHHHHHH-----HHHHHh
Confidence 45678899999999999998875432 2333 58999999995 78999999999999 776665
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.30 E-value=9.7e-07 Score=59.25 Aligned_cols=86 Identities=24% Similarity=0.475 Sum_probs=54.2
Q ss_pred CCCceEEEEEEeCCCCCCCCCCEEE--EEEeCCCCCCCCCCeEEEecCc-----ccCcccCCCCeEEccCCCCCCCC-CC
Q 033374 26 NDGMQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNKI-----YHPNVDELSGSVCLDVINQTWSP-MF 97 (120)
Q Consensus 26 ~~d~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~~G~icl~~l~~~W~p-~~ 97 (120)
++...+--+.+.|--.-.|+|..|. +.|-+|.+||..||.+...-.. -+.+|| .+|+|.+..| ++|++ ..
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s 102 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSS 102 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCC
Confidence 3433333344444333458888886 5566899999999999776432 244999 7999999888 45877 77
Q ss_pred ChhhccccCCHHHHHHHHhcc
Q 033374 98 GKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 98 ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|.+++. .+++.+.++
T Consensus 103 ~L~~lv~-----~l~~~F~~~ 118 (121)
T PF05743_consen 103 NLVDLVQ-----ELQAVFSEE 118 (121)
T ss_dssp -HHHHHH-----HHHHCCCHS
T ss_pred CHHHHHH-----HHHHHHhHc
Confidence 8888887 777766654
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.99 E-value=0.005 Score=42.35 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=42.0
Q ss_pred HHHHHHHHHhc----------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCE--EEEEEeCCCCCCCCCCeEEEecCc
Q 033374 5 SKRREMDLMKL----------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGV--WKIRVELPDAYPYKSPSIGFVNKI 72 (120)
Q Consensus 5 ~kRl~~el~~~----------~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~--f~~~i~fp~~YP~~pP~v~f~t~i 72 (120)
.+||..|++.+ ....+.++. +.+=..|...--- .|+--. |.+++.+|..||..||.|..-.--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 57888888533 234555553 3334455443210 123334 445566799999999999764311
Q ss_pred -ccCcccCCCCeEEccCCC-CCC---CCCCChhhcc
Q 033374 73 -YHPNVDELSGSVCLDVIN-QTW---SPMFGKPSIL 103 (120)
Q Consensus 73 -~Hpnv~~~~G~icl~~l~-~~W---~p~~ti~~vl 103 (120)
--.-.| .+|+||++..- .-| .|.++|...+
T Consensus 101 GKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred Cchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 113345 58999998753 335 5666766655
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0061 Score=47.37 Aligned_cols=67 Identities=30% Similarity=0.498 Sum_probs=49.3
Q ss_pred EeCCCCCCCCCCEEEEEEe--CCCCCCCCCCeEEEecC-----cccCcccCCCCeEEccCCCCCCCCC-CChhhccc
Q 033374 36 FNGPKESSYQGGVWKIRVE--LPDAYPYKSPSIGFVNK-----IYHPNVDELSGSVCLDVINQTWSPM-FGKPSILF 104 (120)
Q Consensus 36 i~gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~Hpnv~~~~G~icl~~l~~~W~p~-~ti~~vl~ 104 (120)
+.|---.+|.|.+|.+=|. +.+.||+.||.+...-. -.|-+|| .+|+|.+..|.+ |.+. ..+..++.
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh~-W~~pssdLv~Liq 129 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLHN-WDPPSSDLVGLIQ 129 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhcc-CCCccchHHHHHH
Confidence 3344455799988885554 69999999999866532 1399999 799999999965 8654 45665555
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.32 E-value=0.05 Score=36.60 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=63.8
Q ss_pred hcCCCCcEEEecCCCceEEEEEEeC--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCC-CeE--EccC
Q 033374 14 KLMMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS-GSV--CLDV 88 (120)
Q Consensus 14 ~~~~~~i~~~~~~~d~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~-G~i--cl~~ 88 (120)
-+...|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|...+..+- +...+ |.+ |-+.
T Consensus 8 ~L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~----L~~~~G~~iP~~~~~ 82 (122)
T PF14462_consen 8 YLDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP----LKLADGGPIPNAAEV 82 (122)
T ss_pred HHHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc----eEccCCCcCCchhcc
Confidence 344567777777777777766 444 4677799999999999999999999988777642 22222 223 3222
Q ss_pred C--------------CCCCCCCC-ChhhccccCCHHHHHHHHhc
Q 033374 89 I--------------NQTWSPMF-GKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 89 l--------------~~~W~p~~-ti~~vl~~~~~~~i~~ll~~ 117 (120)
. ...|+|.. +|.+.|. -|...|..
T Consensus 83 ~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~-----~v~~~L~~ 121 (122)
T PF14462_consen 83 TQTFDGRTWQRWSRHNNPWRPGVDDLWTHLA-----RVEHALAK 121 (122)
T ss_pred hhhcCCeeeeeecCCCCCCCCCCCcHHHHHH-----HHHHHHhh
Confidence 1 24588877 5777777 77776654
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.72 E-value=0.027 Score=36.08 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=30.3
Q ss_pred cCCCceEEEEEEeC--CCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCc
Q 033374 25 INDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (120)
Q Consensus 25 ~~~d~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 72 (120)
...+...+.+.+.+ ...+.-....+++.+.||++||..+|.|...++.
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 25 ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 34455666666632 2333444568999999999999999999887643
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.99 E-value=0.27 Score=31.04 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=23.0
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 45 QGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
..-.+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988764
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.22 E-value=0.039 Score=38.82 Aligned_cols=60 Identities=22% Similarity=0.457 Sum_probs=46.7
Q ss_pred EEEeCCCCCCCCCCeEEEecCcc---cCcccCCC-----CeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHh
Q 033374 51 IRVELPDAYPYKSPSIGFVNKIY---HPNVDELS-----GSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 51 ~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~~-----G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~ 116 (120)
+.|.|+.+||..+|.|.+..+.| +||+. .. ..+|+.--. ..|.+..+++.+|. .|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~-----rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLD-----RLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHH-----HHHHHHH
Confidence 56899999999999887776533 57777 34 679986543 56999999999998 8876654
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.088 Score=35.83 Aligned_cols=94 Identities=17% Similarity=0.383 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCE----------EEEEEeCCCCCCCCCCeEEEecCc-c
Q 033374 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGV----------WKIRVELPDAYPYKSPSIGFVNKI-Y 73 (120)
Q Consensus 5 ~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~t~i-~ 73 (120)
.+||..|++.+-. +++-..++-..|.-.=..+.||-|-|.. |-+++.+|-.||..+|.+..-.-- -
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 4677777764321 0111111112222222345666665532 445666799999999998654211 0
Q ss_pred cCcccCCCCeEEccC-CCCCC---CCCCChhhc
Q 033374 74 HPNVDELSGSVCLDV-INQTW---SPMFGKPSI 102 (120)
Q Consensus 74 Hpnv~~~~G~icl~~-l~~~W---~p~~ti~~v 102 (120)
---.+ .+|+||+.- .+.-| .|.+.|...
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHH
Confidence 11234 589999954 34556 344555443
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.70 E-value=2.8 Score=36.47 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHHHHHH--hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCC-CEEEEEEeCCCCCCCC-CCeEEEecC
Q 033374 7 RREMDLM--KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQG-GVWKIRVELPDAYPYK-SPSIGFVNK 71 (120)
Q Consensus 7 Rl~~el~--~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~g-g~f~~~i~fp~~YP~~-pP~v~f~t~ 71 (120)
-|.+|+. ..+-+.+.++-.+-.-..-.+.+.||-.. =.| ...++.|.||.+||.+ +|++.|..+
T Consensus 424 nLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhccccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3444543 22234444443343344556667655322 233 3357889999999977 799999853
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=83.82 E-value=1.4 Score=33.77 Aligned_cols=85 Identities=13% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCeEE
Q 033374 6 KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85 (120)
Q Consensus 6 kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~ic 85 (120)
+++.+|+.+..-+...-...++++....+.+... ...-.++|.++.+||..+|.+..--+ ...+
T Consensus 102 s~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P-~~~~--------- 165 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLP-IPFS--------- 165 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TT-S-HH---------
T ss_pred HHHHHHHHHhccccceEEecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCC-cchh---------
Confidence 4566666655444333333466788888887622 25577899999999999996422211 1222
Q ss_pred ccCCCCCCCC-CCChhhccccCCHHHHHHHHh
Q 033374 86 LDVINQTWSP-MFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 86 l~~l~~~W~p-~~ti~~vl~~~~~~~i~~ll~ 116 (120)
..|.+ ..++.+|+. ..+..|.
T Consensus 166 -----~~w~~~~ssL~~v~~-----qF~~~le 187 (291)
T PF09765_consen 166 -----LSWSPSQSSLKDVVQ-----QFQEALE 187 (291)
T ss_dssp -----HHHHCHT-SHHHHHH-----HHHHHHH
T ss_pred -----hhhcccccCHHHHHH-----HHHHHHH
Confidence 24888 678888888 7776654
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.04 E-value=14 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEEEeCCCCCCCCCCeEEEe
Q 033374 48 VWKIRVELPDAYPYKSPSIGFV 69 (120)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~ 69 (120)
.+.+.+.++.+||..+|-+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 38
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=70.73 E-value=25 Score=24.76 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=48.4
Q ss_pred EEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCeEEccCCCCCCCC--CCChhhccccCCH
Q 033374 31 EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQTWSP--MFGKPSILFPSTH 108 (120)
Q Consensus 31 ~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~W~p--~~ti~~vl~~~~~ 108 (120)
...+.+..|+-.|- --...++|.| .||-..||.|.|+.+.-.--|- -..+-+++|...==+ .-.+-+++.|-.+
T Consensus 38 ~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp~T~~~~~--~k~l~~~mlr~~~L~~app~~~~~l~qq~~ 113 (177)
T PF14455_consen 38 TADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDPFTGTPLA--RKDLGLKMLRRPHLPGAPPEMISVLMQQQA 113 (177)
T ss_pred eEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEeccccCCccc--ccccchhhhhcCCCCCCCchhhhhcccccc
Confidence 33444443444442 2335678888 8999999999999754333332 223455666433211 1235566766666
Q ss_pred HHHHHHHhc
Q 033374 109 VTICQMLQS 117 (120)
Q Consensus 109 ~~i~~ll~~ 117 (120)
++++.+|+.
T Consensus 114 ~s~~~~~~a 122 (177)
T PF14455_consen 114 LSLQDFLSA 122 (177)
T ss_pred hhhhhhccC
Confidence 777777765
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.18 E-value=8 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=22.1
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecCccc
Q 033374 47 GVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (120)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (120)
-.|-+.|.+|..||...|.++|.+ +||
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 346777888999999999999987 455
No 40
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=68.18 E-value=22 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=28.6
Q ss_pred eEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 30 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
.+|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 58999999888765556677788889999886 6655555533
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.07 E-value=14 Score=29.04 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=34.7
Q ss_pred CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec-CcccCc
Q 033374 28 GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN-KIYHPN 76 (120)
Q Consensus 28 d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpn 76 (120)
....+.+.| ||.|...+-+|.|...||..||-+.|.. .-|+|-
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 355666666 6899999999999999999999999963 347773
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=58.58 E-value=18 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.1
Q ss_pred CCCEEEEEEeCCCCCC-CCCCeEEEec
Q 033374 45 QGGVWKIRVELPDAYP-YKSPSIGFVN 70 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 70 (120)
+.|.|.|.-.+|-.|| ..||-|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3588999999999999 9999999974
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=50.94 E-value=28 Score=24.97 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 45 QGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
+.|.|.|.=.+|--||..+|-|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999999974
No 44
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=49.60 E-value=30 Score=27.08 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=30.3
Q ss_pred eEEEEEEeCCCCC-CCCCCEEEEEEe---CCCCCCCCCCeEEEec
Q 033374 30 QEFYVEFNGPKES-SYQGGVWKIRVE---LPDAYPYKSPSIGFVN 70 (120)
Q Consensus 30 ~~w~~~i~gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~t 70 (120)
.+|+..+.|-.++ -|++|.+++.++ | ++-=...|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeE
Confidence 4788899998776 788999998887 4 33344567999975
No 45
>smart00340 HALZ homeobox associated leucin zipper.
Probab=48.00 E-value=14 Score=20.26 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcC
Q 033374 4 PSKRREMDLMKLM 16 (120)
Q Consensus 4 ~~kRl~~el~~~~ 16 (120)
.++||++|++++.
T Consensus 20 eNrRL~ke~~eLr 32 (44)
T smart00340 20 ENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHH
Confidence 4789999997654
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.73 E-value=39 Score=23.50 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred CCEEEEEEeCCCCCC-----CCCCeEEEec
Q 033374 46 GGVWKIRVELPDAYP-----YKSPSIGFVN 70 (120)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~t 70 (120)
.|.|.|.-.+|--|| ..||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999974
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=36.81 E-value=71 Score=24.25 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=28.9
Q ss_pred CceEEEEEEeCCCCCCC-CC---CEEEEEEeCC-----CCCCCCCCeEEEecCcc
Q 033374 28 GMQEFYVEFNGPKESSY-QG---GVWKIRVELP-----DAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 28 d~~~w~~~i~gp~~tpy-~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 73 (120)
|..-|.+... ..||-- +| ..|+..+.+. .|-||+||+|+.+++-|
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 4555666665 333332 22 3355566664 68899999999999865
No 48
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=35.32 E-value=20 Score=25.13 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=11.0
Q ss_pred CcccCcccCCCCeEEc
Q 033374 71 KIYHPNVDELSGSVCL 86 (120)
Q Consensus 71 ~i~Hpnv~~~~G~icl 86 (120)
++|||+.| .|.+|+
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 69999999 666664
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.99 E-value=55 Score=25.64 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.0
Q ss_pred CEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
-.+.+.+..+..||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678899999999999999998865
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=33.83 E-value=1.2e+02 Score=19.11 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=20.7
Q ss_pred CCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 44 YQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 44 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
-||..+.+.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 589988864
No 51
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=42 Score=24.36 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCeEEccCCCCCCCCCCChhhccc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILF 104 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~ 104 (120)
.+..|.++++..|+|..|.+.-+-
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHH
Confidence 678999999999999999887664
No 52
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.50 E-value=81 Score=22.72 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033374 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (120)
.|.|.|.=..|-.||. .||-|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999998 88888886
No 53
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=30.38 E-value=46 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCceEEEEEEeCCCCCCCC-CCEEEEEEeC
Q 033374 27 DGMQEFYVEFNGPKESSYQ-GGVWKIRVEL 55 (120)
Q Consensus 27 ~d~~~w~~~i~gp~~tpy~-gg~f~~~i~f 55 (120)
.|...|.|++.|++|+++. +.+|-+.+.|
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchheeeH
Confidence 4677888999999988874 3444444433
No 54
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=44 Score=26.18 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=18.8
Q ss_pred CCCCCCCCeEEEecCcccCccc
Q 033374 57 DAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 57 ~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
++-+...|+|.|.-.+|||||-
T Consensus 303 dgs~eds~rvV~~V~lwhpevq 324 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQ 324 (334)
T ss_pred CCCcccCceEEEEEeccCcccc
Confidence 4556668999999999999997
No 55
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.88 E-value=92 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.3
Q ss_pred CCEEEEEEeCCCCCCC-----CCCeEEEe
Q 033374 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (120)
.|.|.|.=.+|--||. .||-|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 78888776
No 56
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=29.01 E-value=31 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCCeEEccCCCCCCCCCCChh
Q 033374 80 LSGSVCLDVINQTWSPMFGKP 100 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~ 100 (120)
..|.+|.-.+...|+|.+|+.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 355668878889999999864
No 57
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=26.49 E-value=33 Score=24.13 Aligned_cols=14 Identities=43% Similarity=0.418 Sum_probs=11.5
Q ss_pred CcccCCCCeEEccCC
Q 033374 75 PNVDELSGSVCLDVI 89 (120)
Q Consensus 75 pnv~~~~G~icl~~l 89 (120)
+||+ .+|+||+.-.
T Consensus 98 ~NV~-~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVY-SNGSVCWGNN 111 (175)
T ss_pred cccC-CCCcEeeCCC
Confidence 5999 6999999663
No 58
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=24.52 E-value=1e+02 Score=17.82 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=11.6
Q ss_pred EEEEEeCCCCCCCCCCeEEEe
Q 033374 49 WKIRVELPDAYPYKSPSIGFV 69 (120)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~ 69 (120)
+...|.|+..|.. ||+|.+-
T Consensus 3 ~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 3 YSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEE-SS--SS---EEEEE
T ss_pred eEEEeEcChhcCC-CCEEEEE
Confidence 5678999999886 8998664
No 59
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.49 E-value=87 Score=26.59 Aligned_cols=29 Identities=28% Similarity=0.739 Sum_probs=23.1
Q ss_pred CCCCCCEEEEEEeCCCCCCCC---CCeEEEecC
Q 033374 42 SSYQGGVWKIRVELPDAYPYK---SPSIGFVNK 71 (120)
Q Consensus 42 tpy~gg~f~~~i~fp~~YP~~---pP~v~f~t~ 71 (120)
+||.=|.|-+ +.+|++||+- -|.++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677777774 5679999986 599999995
No 60
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.75 E-value=1.5e+02 Score=22.57 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEeCCCCCCCCC--CeEEEec
Q 033374 41 ESSYQGGVWKIRVELPDAYPYKS--PSIGFVN 70 (120)
Q Consensus 41 ~tpy~gg~f~~~i~fp~~YP~~p--P~v~f~t 70 (120)
.+.+.|..|++-|..|.+||-.- |.|.|..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 56788999999999999999887 9998875
No 61
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=22.36 E-value=30 Score=17.65 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=8.5
Q ss_pred cccCcccCCCCe-EEccC
Q 033374 72 IYHPNVDELSGS-VCLDV 88 (120)
Q Consensus 72 i~Hpnv~~~~G~-icl~~ 88 (120)
-|||.+. .+|+ .|-..
T Consensus 2 ~yHPg~~-~~g~W~CC~q 18 (32)
T PF00779_consen 2 KYHPGAW-RGGKWLCCKQ 18 (32)
T ss_dssp EE-SS-E-ETTCESSSS-
T ss_pred CcCCCcc-cCCcCcCCCC
Confidence 4899999 4665 55543
No 62
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=20.93 E-value=36 Score=19.79 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=8.2
Q ss_pred CCCCCCChhhccc
Q 033374 92 TWSPMFGKPSILF 104 (120)
Q Consensus 92 ~W~p~~ti~~vl~ 104 (120)
+|+|.++|+++|.
T Consensus 37 gW~p~~~L~~~i~ 49 (62)
T PF13950_consen 37 GWKPKYSLEDMIR 49 (62)
T ss_dssp ----SSSHHHHHH
T ss_pred CCCcCCCHHHHHH
Confidence 7999999999887
No 63
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.51 E-value=1.6e+02 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.3
Q ss_pred CCEEEEEEeCCCCCC------------------CCCCeEEEec
Q 033374 46 GGVWKIRVELPDAYP------------------YKSPSIGFVN 70 (120)
Q Consensus 46 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 70 (120)
.|.|.|.=..|.-|| ..||-|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 588999999999997 6789998873
No 64
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=20.09 E-value=1.2e+02 Score=22.50 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.4
Q ss_pred CcccCCCCeEEccCC
Q 033374 75 PNVDELSGSVCLDVI 89 (120)
Q Consensus 75 pnv~~~~G~icl~~l 89 (120)
+||+ .+|+||+.-.
T Consensus 139 fNV~-~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVW-SNGEICAGNA 152 (228)
T ss_pred CccC-CCCeEeeCCC
Confidence 5999 6999999654
No 65
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=20.06 E-value=69 Score=24.97 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHhc
Q 033374 1 MSSPSKRREMDLMKL 15 (120)
Q Consensus 1 Ms~~~kRl~~el~~~ 15 (120)
||..++|+|+||.+.
T Consensus 233 mS~~T~~lq~qL~~A 247 (310)
T PF10319_consen 233 MSKKTKRLQRQLFKA 247 (310)
T ss_pred hCHhHHHHHHHHHHH
Confidence 788999999999754
Done!