Query 033374
Match_columns 120
No_of_seqs 126 out of 1118
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 3.7E-43 1.3E-47 236.2 11.7 113 1-119 4-120 (125)
2 2h2y_A Ubiquitin-conjugating e 100.0 3.5E-42 1.2E-46 234.5 13.6 114 1-120 18-135 (136)
3 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.7E-41 5.7E-46 238.5 13.1 113 1-119 1-117 (169)
4 2a7l_A Hypothetical ubiquitin- 100.0 5.5E-42 1.9E-46 233.5 10.1 110 1-116 20-136 (136)
5 2aak_A UBC1, ubiquitin conjuga 100.0 4.6E-41 1.6E-45 232.6 13.3 113 1-119 1-117 (152)
6 2bep_A Ubiquitin-conjugating e 100.0 6.7E-41 2.3E-45 233.3 12.0 113 1-118 5-124 (159)
7 2ucz_A UBC7, ubiquitin conjuga 100.0 1E-40 3.4E-45 233.6 12.9 113 1-119 1-131 (165)
8 2ayv_A Ubiquitin-conjugating e 100.0 1.4E-40 4.9E-45 233.2 13.4 111 3-119 21-134 (166)
9 2e2c_A Ubiquitin conjugating e 100.0 1.5E-40 5.1E-45 230.9 13.1 110 4-119 10-122 (156)
10 2c2v_B Ubiquitin-conjugating e 100.0 5.6E-41 1.9E-45 232.7 10.3 109 4-118 6-117 (154)
11 1jat_A Ubiquitin-conjugating e 100.0 1.1E-40 3.6E-45 231.5 11.6 111 2-118 4-117 (155)
12 4gpr_A Ubiquitin-conjugating e 100.0 2.2E-40 7.4E-45 229.0 13.1 109 4-118 5-116 (151)
13 2r0j_A Ubiquitin carrier prote 100.0 2.2E-40 7.5E-45 228.6 12.8 109 5-119 3-114 (149)
14 1z2u_A Ubiquitin-conjugating e 100.0 2.2E-40 7.6E-45 228.7 12.8 109 4-118 5-116 (150)
15 1zdn_A Ubiquitin-conjugating e 100.0 1.3E-40 4.5E-45 231.7 11.5 109 4-118 14-125 (158)
16 3k9o_A Ubiquitin-conjugating e 100.0 1.7E-40 5.7E-45 239.0 12.0 114 1-119 2-122 (201)
17 2c4o_A Ubiquitin-conjugating e 100.0 3.3E-40 1.1E-44 231.1 12.9 109 4-118 20-131 (165)
18 1i7k_A Ubiquitin-conjugating e 100.0 2.4E-40 8.1E-45 234.5 12.1 110 4-119 31-143 (179)
19 3h8k_A Ubiquitin-conjugating e 100.0 3.8E-40 1.3E-44 230.4 12.8 112 2-119 2-130 (164)
20 1fxt_A Ubiquitin-conjugating e 100.0 1.2E-40 4.2E-45 229.8 10.0 111 4-119 2-116 (149)
21 1yh2_A HSPC150 protein similar 100.0 4.2E-40 1.4E-44 231.3 12.3 111 3-119 4-121 (169)
22 1yrv_A Ubiquitin-conjugating l 100.0 1.8E-40 6.2E-45 233.3 10.1 114 1-119 20-139 (169)
23 2onu_A Ubiquitin-conjugating e 100.0 1.6E-41 5.4E-46 235.1 4.0 113 2-119 1-114 (152)
24 3rz3_A Ubiquitin-conjugating e 100.0 8.3E-40 2.8E-44 232.4 12.9 110 3-118 7-133 (183)
25 3bzh_A Ubiquitin-conjugating e 100.0 4.7E-40 1.6E-44 235.5 11.5 110 3-118 48-160 (194)
26 1y8x_A Ubiquitin-conjugating e 100.0 7.8E-40 2.7E-44 228.2 11.8 112 1-119 4-117 (160)
27 2gjd_A Ubiquitin-conjugating e 100.0 9.7E-40 3.3E-44 227.1 12.1 113 1-119 1-124 (157)
28 2pwq_A Ubiquitin conjugating e 100.0 3.7E-40 1.3E-44 239.4 10.0 110 4-118 24-136 (216)
29 3rcz_B SUMO-conjugating enzyme 100.0 2E-39 6.9E-44 226.8 12.8 110 4-119 11-130 (163)
30 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.8E-39 6.1E-44 232.3 12.8 110 4-118 33-158 (193)
31 2awf_A Ubiquitin-conjugating e 100.0 2.2E-39 7.4E-44 228.3 13.0 111 3-119 17-144 (172)
32 2z5d_A Ubiquitin-conjugating e 100.0 2.6E-40 9E-45 234.2 6.6 110 4-119 26-136 (179)
33 2a4d_A Ubiquitin-conjugating e 100.0 2.4E-39 8.1E-44 225.7 11.3 110 4-118 26-144 (160)
34 3e46_A Ubiquitin-conjugating e 100.0 2.6E-39 9.1E-44 239.5 12.0 114 1-119 54-174 (253)
35 2grr_A Ubiquitin-conjugating e 100.0 3.8E-39 1.3E-43 224.9 12.1 113 1-119 4-127 (161)
36 2nvu_C NEDD8-conjugating enzym 100.0 4.1E-39 1.4E-43 228.4 11.1 111 2-119 25-137 (180)
37 2y9m_A Ubiquitin-conjugating e 100.0 7.4E-39 2.5E-43 225.6 11.4 113 1-118 3-133 (172)
38 1wzv_A Ubiquitin-conjugating e 100.0 9.1E-39 3.1E-43 221.7 10.9 109 4-119 5-118 (155)
39 1jat_B Ubiquitin-conjugating e 100.0 8.2E-39 2.8E-43 218.2 10.4 112 1-118 2-124 (138)
40 1tte_A Ubiquitin-conjugating e 100.0 1.8E-39 6.1E-44 235.6 6.5 113 2-119 1-117 (215)
41 2hlw_A Ubiquitin-conjugating e 100.0 1.2E-38 4.3E-43 224.0 10.2 111 3-118 35-154 (170)
42 1yf9_A Ubiquitin carrier prote 100.0 3.1E-39 1.1E-43 227.3 6.7 110 4-119 13-123 (171)
43 2q0v_A Ubiquitin-conjugating e 100.0 3.5E-38 1.2E-42 219.1 11.2 110 3-119 21-140 (156)
44 3fn1_B NEDD8-conjugating enzym 100.0 5E-38 1.7E-42 220.3 10.6 109 2-117 13-131 (167)
45 3o2u_A NEDD8-conjugating enzym 100.0 1.3E-37 4.4E-42 222.3 11.5 110 2-118 28-145 (190)
46 1c4z_D UBCH7, ubiquitin conjug 100.0 9E-38 3.1E-42 216.4 10.0 109 4-119 3-116 (154)
47 4ds2_A Ubiquitin-conjugating e 100.0 1.4E-37 4.7E-42 218.1 8.2 111 1-116 5-133 (167)
48 4ddg_A Ubiquitin-conjugating e 100.0 1.1E-36 3.7E-41 238.0 11.9 112 2-119 2-116 (399)
49 1zuo_A Hypothetical protein LO 100.0 2.5E-37 8.5E-42 220.2 6.8 109 4-118 28-156 (186)
50 2f4w_A Ubiquitin-conjugating e 100.0 3.9E-36 1.4E-40 214.1 12.3 107 4-118 15-127 (187)
51 3ceg_A Baculoviral IAP repeat- 100.0 6.7E-35 2.3E-39 221.8 11.8 107 4-116 77-203 (323)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.6E-29 5.5E-34 175.4 -2.4 96 5-104 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.7E-19 6E-24 125.4 6.4 93 20-119 51-158 (162)
54 3kpa_A Probable ubiquitin fold 99.7 2.1E-19 7.1E-24 122.5 -2.6 86 5-97 36-132 (168)
55 3obq_A Tumor susceptibility ge 99.6 1E-15 3.4E-20 104.8 6.1 81 26-118 50-139 (146)
56 2ebm_A RWD domain-containing p 96.7 0.0086 2.9E-07 38.9 7.2 68 1-70 8-78 (128)
57 2yz0_A Serine/threonine-protei 95.1 0.089 3E-06 34.4 6.8 41 29-70 45-85 (138)
58 2day_A Ring finger protein 25; 94.5 0.15 5.2E-06 32.8 6.8 43 28-70 38-82 (128)
59 3zqs_A E3 ubiquitin-protein li 93.9 0.41 1.4E-05 33.5 8.1 83 7-116 5-87 (186)
60 2ebk_A RWD domain-containing p 93.0 0.22 7.5E-06 32.1 5.4 41 29-70 39-79 (128)
61 2daw_A RWD domain containing p 92.0 0.32 1.1E-05 32.6 5.3 24 48-71 76-99 (154)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 92.0 0.096 3.3E-06 34.1 2.6 41 29-70 44-86 (137)
63 2dax_A Protein C21ORF6; RWD do 90.4 0.21 7.1E-06 33.3 3.1 24 48-71 74-97 (152)
64 3rls_A YAF9, protein AF-9 homo 56.4 42 0.0014 23.0 6.3 43 27-71 30-72 (175)
65 3qrl_A Transcription initiatio 54.4 44 0.0015 22.0 6.2 44 28-73 31-77 (140)
66 2cu9_A Spcia1, histone chapero 38.9 84 0.0029 21.2 5.5 46 20-65 26-86 (161)
67 1roc_A Anti-silencing protein 37.6 91 0.0031 20.9 5.6 38 20-57 27-79 (155)
68 2i32_A Anti-silencing factor 1 35.5 1E+02 0.0035 21.2 5.6 44 21-64 52-110 (182)
69 1vpk_A DNA polymerase III, bet 31.0 78 0.0027 23.6 4.9 47 7-64 85-132 (378)
70 2idc_A Anti-silencing protein 30.1 1.3E+02 0.0046 20.5 5.5 38 20-57 28-80 (179)
71 2bum_A Protocatechuate 3,4-dio 29.8 57 0.002 22.7 3.7 26 45-70 109-139 (209)
72 2hue_A Anti-silencing protein 29.0 1.4E+02 0.0047 20.4 5.7 43 20-62 32-89 (175)
73 2io5_A ASF1A protein; chaperon 26.1 1.6E+02 0.0054 20.1 5.8 45 20-64 29-88 (175)
74 2ccv_A Helix pomatia agglutini 24.1 1.2E+02 0.004 18.5 4.0 24 46-70 28-51 (101)
75 1f53_A Yeast killer toxin-like 23.0 20 0.00067 21.4 0.2 11 58-68 70-80 (84)
76 2lta_A De novo designed protei 28.3 18 0.00062 21.9 0.0 33 5-37 39-73 (110)
77 3pft_A Flavin reductase; desul 20.1 55 0.0019 21.3 2.0 29 62-91 43-74 (157)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-43 Score=236.24 Aligned_cols=113 Identities=23% Similarity=0.505 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCc-ccCc
Q 033374 1 MSSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (120)
Q Consensus 1 Ms~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 76 (120)
|+++.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 7888999999986 45678999999999999999999999999999999999999999999999999999997 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|+ .+|+||+++|.++|+|++|+++||+ +|++||.+..
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i~~vl~-----si~~ll~~p~ 120 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSISGLVL-----SIISMLSSAK 120 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHC---
T ss_pred CC-CCCEEEchhcCCCCCCCCcHHHHHH-----HHHHHHhCcc
Confidence 99 6999999999999999999999999 9999999864
No 2
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.5e-42 Score=234.47 Aligned_cols=114 Identities=25% Similarity=0.514 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCc-ccCc
Q 033374 1 MSSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (120)
Q Consensus 1 Ms~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn 76 (120)
|+.+.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 5668999999996 45678999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccCC
Q 033374 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSYN 120 (120)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~~ 120 (120)
|+ .+|+||+++|.++|+|++||++||+ +|++||.+..+
T Consensus 98 v~-~~G~ICl~iL~~~WsP~~ti~~vL~-----si~sll~~p~~ 135 (136)
T 2h2y_A 98 VY-SNGDICLSVLGDDYNPSLSISGLIL-----SIISMLSSAKE 135 (136)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCHHHHHH-----HHHHHHSSSCC
T ss_pred CC-CCCEEECccccCCCCCCCcHHHHHH-----HHHHHHhCcCc
Confidence 99 6999999999999999999999999 99999998754
No 3
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-41 Score=238.55 Aligned_cols=113 Identities=26% Similarity=0.604 Sum_probs=105.9
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||+ +.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 776 7899999986 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|+ .+|+||+++|.++|+|+++|++||+ +|++||.+.+
T Consensus 81 I~-~~G~ICl~iL~~~WsP~~~i~~vL~-----si~~ll~~Pn 117 (169)
T 1ayz_A 81 VY-ANGEICLDILQNRWTPTYDVASILT-----SIQSLFNDPN 117 (169)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHTCCC
T ss_pred CC-CCCeEeehhhccCCCCcCcHHHHHH-----HHHHHHhCCC
Confidence 99 5999999999999999999999999 9999998754
No 4
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-42 Score=233.51 Aligned_cols=110 Identities=25% Similarity=0.578 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHH---hcCCCCcEEE--ecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc--
Q 033374 1 MSSPSKRREMDLM---KLMMSDYKVE--MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY-- 73 (120)
Q Consensus 1 Ms~~~kRl~~el~---~~~~~~i~~~--~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 73 (120)
||++.+||++|++ +.+++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 6766799999996 4567899865 78899999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHh
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~ 116 (120)
||||+ .+|+||+++|.++|+|++||++||+ +|++||+
T Consensus 100 HPNV~-~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~slL~ 136 (136)
T 2a7l_A 100 HPHVY-SNGHICLSILTEDWSPALSVQSVCL-----SIISMLS 136 (136)
T ss_dssp BTTBC-TTCBBCCGGGTTTCCTTSCHHHHHH-----HHHHHTC
T ss_pred CccCC-CCCeEEchhcCCCCCCCCcHHHHHH-----HHHHHhC
Confidence 99999 6999999999999999999999999 9999984
No 5
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=4.6e-41 Score=232.57 Aligned_cols=113 Identities=27% Similarity=0.618 Sum_probs=106.5
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
||+ +.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 776 7899999986 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 77 VDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|+ .+|+||+++|.++|+|+++|++||+ +|++||.+..
T Consensus 81 v~-~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p~ 117 (152)
T 2aak_A 81 IY-ADGSICLDILQNQWSPIYDVAAILT-----SIQSLLCDPN 117 (152)
T ss_dssp BC-TTSBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred CC-CCCEEechhhcCCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 99 5999999999999999999999999 9999998753
No 6
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.7e-41 Score=233.31 Aligned_cols=113 Identities=25% Similarity=0.755 Sum_probs=105.6
Q ss_pred CCC-HHHHHHHHHHhc------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~kRl~~el~~~------~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
||+ +.+||++|++++ +..|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 554 789999999754 3679999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
||||+..+|+||+++|.++|+|++||++||+ +|++||.++
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 124 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAA 124 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 9999955999999999999999999999999 999999876
No 7
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1e-40 Score=233.63 Aligned_cols=113 Identities=27% Similarity=0.556 Sum_probs=104.1
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecC-CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~-~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
||+ +.+||++|++ +.+.+|+++.+.+ +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 776 7899999886 5567899999875 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCC-------------CCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 76 NVDELSGSVCLDVI-------------NQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nv~~~~G~icl~~l-------------~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||+ .+|+||+++| .++|+|++||++||+ +|++||.+..
T Consensus 81 Nv~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~-----si~~ll~~Pn 131 (165)
T 2ucz_A 81 NIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL-----SVMSMLSEPN 131 (165)
T ss_dssp TBC-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCC-CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHH-----HHHHHHhCCC
Confidence 999 6999999999 688999999999999 9999998753
No 8
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-40 Score=233.19 Aligned_cols=111 Identities=32% Similarity=0.711 Sum_probs=104.9
Q ss_pred CHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
.+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 21 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~- 99 (166)
T 2ayv_A 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN- 99 (166)
T ss_dssp THHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-
Confidence 37899999996 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|.++|+|++||++||+ +|++||.+..
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~pn 134 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLL-----SISSLLTDPN 134 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCCeEEcccccccCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 6999999999999999999999999 9999998753
No 9
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-40 Score=230.93 Aligned_cols=110 Identities=29% Similarity=0.616 Sum_probs=104.4
Q ss_pred HHHHHHHHHHh---cCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~~---~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|+++ .+.+|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD-Q 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc-c
Confidence 78999999974 4678999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+|+||+++|.++|+|+++|++||+ +|++||.+..
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~-----si~~ll~~pn 122 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILL-----SLQSLLGEPN 122 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHTTSCC
T ss_pred CceEECccccccCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 999999999999999999999999 9999998753
No 10
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-41 Score=232.67 Aligned_cols=109 Identities=32% Similarity=0.666 Sum_probs=103.7
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 84 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-K 84 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc-c
Confidence 5789999886 55778999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|++||.+.
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 117 (154)
T 2c2v_B 85 LGRICLDILKDKWSPALQIRTVLL-----SIQALLSAP 117 (154)
T ss_dssp TCBBCCHHHHTSCCTTCCHHHHHH-----HHHHHTTSC
T ss_pred CCeEEchhccCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999875
No 11
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.1e-40 Score=231.47 Aligned_cols=111 Identities=34% Similarity=0.696 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc
Q 033374 2 SSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 2 s~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
+++.+||++|++ +.+.+|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 346799999986 45778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|+||+++|.++|+|+++|++||+ +|++||.+.
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 117 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLL-----SIQALLASP 117 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHH-----HHHHHHhCC
Confidence 7999999999999999999999999 999999875
No 12
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-40 Score=229.03 Aligned_cols=109 Identities=29% Similarity=0.707 Sum_probs=104.2
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.|||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~-~ 83 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-K 83 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC-C
Confidence 7899999986 45678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|++||++||+ +|++||.+.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 116 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLL-----SISSLLTDP 116 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHH-----HHHHHhcCC
Confidence 999999999999999999999999 999999875
No 13
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.2e-40 Score=228.57 Aligned_cols=109 Identities=30% Similarity=0.677 Sum_probs=102.9
Q ss_pred HHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCC
Q 033374 5 SKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 5 ~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 81 (120)
.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID-KL 81 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-TT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCC-CC
Confidence 489998886 45778999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 82 GSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 82 G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|+||+++|.++|+|++||++||+ +|++||.+..
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p~ 114 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLL-----SIQALLSSPE 114 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHH-----HHHHHHHSCC
T ss_pred CEEechhcCCCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 99999999999999999999999 9999998753
No 14
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.2e-40 Score=228.71 Aligned_cols=109 Identities=33% Similarity=0.752 Sum_probs=103.8
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC-C
Confidence 6899999996 45678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|++||.+.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p 116 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLL-----SICSLLCDP 116 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeeccccCCCCCCCCHHHHHH-----HHHHHhhCC
Confidence 999999999999999999999999 999999875
No 15
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-40 Score=231.65 Aligned_cols=109 Identities=25% Similarity=0.521 Sum_probs=103.6
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-A 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC-C
Confidence 5799999986 45678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|+++|++||+ +|++||.+.
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p 125 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLL-----TIKCLLIHP 125 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCEEehhhcCCCCCCCCcHHHHHH-----HHHHHHhCC
Confidence 899999999999999999999999 999999875
No 16
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.7e-40 Score=238.98 Aligned_cols=114 Identities=25% Similarity=0.753 Sum_probs=105.2
Q ss_pred CCC-HHHHHHHHHHhcC------CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 1 MSS-PSKRREMDLMKLM------MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~kRl~~el~~~~------~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
||+ +.+||++|++++. +.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 665 7999999997552 469999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||||+..+|+||+++|.++|+|++||++||+ +|++||.+..
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p~ 122 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAAE 122 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHH-----HHHHHhcCCC
Confidence 9999955999999999999999999999999 9999998753
No 17
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=3.3e-40 Score=231.13 Aligned_cols=109 Identities=33% Similarity=0.744 Sum_probs=103.8
Q ss_pred HHHHHHHHHHh---cCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~~---~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|+++ .++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~-~ 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC-C
Confidence 68999999974 4667999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|++||++||+ +|++||.+.
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~-----si~~ll~~p 131 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLL-----SICSLLCDP 131 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 999999999999999999999999 999999875
No 18
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-40 Score=234.49 Aligned_cols=110 Identities=27% Similarity=0.566 Sum_probs=104.2
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+..|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~-~ 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-T 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc-c
Confidence 7899999986 45678999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+|+||+++|.++|+|+++|++||+ +|++||.+..
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~Pn 143 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILL-----SIQSLLGEPN 143 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCeEEcccCcCcCCCCCCHHHHHH-----HHHHHHhCCC
Confidence 999999999999999999999999 9999998753
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3.8e-40 Score=230.43 Aligned_cols=112 Identities=23% Similarity=0.502 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHH---hcCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcc
Q 033374 2 SSPSKRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 2 s~~~kRl~~el~---~~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 77 (120)
+++.|||++|++ +.++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 347899999986 55678999998876 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 78 DELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 78 ~~~~G~icl~~l~-------------~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+ .+|+||+++|. ++|+|++||++||+ +|++||.+..
T Consensus 82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~-----~i~~ll~~pn 130 (164)
T 3h8k_A 82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL-----SVVSMLAEPN 130 (164)
T ss_dssp C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHH-----HHHHHHcCCC
Confidence 9 69999999997 78999999999999 9999998753
No 20
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.2e-40 Score=229.77 Aligned_cols=111 Identities=30% Similarity=0.687 Sum_probs=103.5
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+||++|++ +.+++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 4699999886 44678999999887 9999999999999999999999999999999999999999999999999994
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|.++|+|++||++||+ +|++||.+..
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~-----~i~~ll~~p~ 116 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALI-----SLQALLQSPE 116 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 4999999999999999999999999 9999998753
No 21
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-40 Score=231.34 Aligned_cols=111 Identities=28% Similarity=0.602 Sum_probs=104.7
Q ss_pred CHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
++.+||++|++ +.++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~- 82 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID- 82 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-
Confidence 47899999996 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC----CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVIN----QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~----~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|. ++|+|++||++||+ +|++||.+..
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~-----si~~ll~~p~ 121 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLT-----SIQLLMSEPN 121 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHH-----HHHHHHHSCC
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 79999999998 89999999999999 9999998753
No 22
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-40 Score=233.26 Aligned_cols=114 Identities=25% Similarity=0.520 Sum_probs=105.6
Q ss_pred CCC-HHHHHHHHHHh---cCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 1 MSS-PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 1 Ms~-~~kRl~~el~~---~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
|++ +.+||++|+++ .+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 555 68999999864 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 77 VDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 77 v~~~~G~icl~~l~--~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
|+..+|+||+++|. ++|+|+++|++||+ +|++||.+..
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~-----sI~sll~~Pn 139 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILL-----ALQVMLSNPV 139 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHH-----HHHHHHhCCC
Confidence 93379999999998 89999999999999 9999998763
No 23
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-41 Score=235.07 Aligned_cols=113 Identities=49% Similarity=0.959 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCC
Q 033374 2 SSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (120)
Q Consensus 2 s~~~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~ 81 (120)
+++.|||+||++++...|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+
T Consensus 1 ~sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~ 80 (152)
T 2onu_A 1 GTSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80 (152)
T ss_dssp --CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTT
T ss_pred ChHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcC
Confidence 35679999999988888999999999999999999999999999999999999999999999999999999999999559
Q ss_pred CeEEccCCCCCCCCCCChhhccccCCHHH-HHHHHhccC
Q 033374 82 GSVCLDVINQTWSPMFGKPSILFPSTHVT-ICQMLQSSY 119 (120)
Q Consensus 82 G~icl~~l~~~W~p~~ti~~vl~~~~~~~-i~~ll~~~~ 119 (120)
|+||+++|.++|+|+++|++||+ + |++||.+..
T Consensus 81 G~iCl~il~~~W~p~~~i~~vl~-----~ii~~Ll~~Pn 114 (152)
T 2onu_A 81 GSVCLDVINQTWTPLYSLVNVFE-----VFLPQLLTYPN 114 (152)
T ss_dssp CBBCHHHHHHHCCTTCCHHHHHH-----THHHHHHHSCC
T ss_pred CeEecccccccCCCCCCHHHHHH-----HHHHHHHhCCC
Confidence 99999999999999999999999 9 689987653
No 24
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=8.3e-40 Score=232.42 Aligned_cols=110 Identities=27% Similarity=0.661 Sum_probs=102.3
Q ss_pred CHHHHHHHHHH---hcCCCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc
Q 033374 3 SPSKRREMDLM---KLMMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 3 ~~~kRl~~el~---~~~~~~i~~~-~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
++.|||++|++ +.++.|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 86 (183)
T 3rz3_A 7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86 (183)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence 37899999986 5577899998 6678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 79 ELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 79 ~~~G~icl~~l~-------------~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|+||+++|. ++|+|++||++||+ +|++||.+.
T Consensus 87 -~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~-----si~~ll~~P 133 (183)
T 3rz3_A 87 -ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-----SVISLLNEP 133 (183)
T ss_dssp -TTSBBCCTTC--------------CCCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred -CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 59999999996 88999999999999 999999875
No 25
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=4.7e-40 Score=235.54 Aligned_cols=110 Identities=29% Similarity=0.649 Sum_probs=104.3
Q ss_pred CHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 3 SPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 3 ~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
.+.+||++|++ +.+++|+++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~- 126 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN- 126 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC-
Confidence 36899999996 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|+||+++|.++|+|+++|++||+ +|++||.+.
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~~ll~~p 160 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLL-----SICSLLTDC 160 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCCceechhhhccCCCcCcHHHHHH-----HHHHHHhCC
Confidence 6999999999999999999999999 999999875
No 26
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.8e-40 Score=228.22 Aligned_cols=112 Identities=24% Similarity=0.535 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHhcC-CCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc
Q 033374 1 MSSPSKRREMDLMKLM-MSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 1 Ms~~~kRl~~el~~~~-~~~i~~~-~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
|+.+.+||++|++++. ++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 4568999999999874 4689998 7889999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|.++|+|+++|++||+ +|++||.+.+
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~Pn 117 (160)
T 1y8x_A 83 -LEGNVCLNILREDWKPVLTINSIIY-----GLQYLFLEPN 117 (160)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred -CCCeEEcccchhhccCCCCHHHHHH-----HHHHHHhCCC
Confidence 6999999999999999999999999 9999998764
No 27
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=9.7e-40 Score=227.07 Aligned_cols=113 Identities=30% Similarity=0.572 Sum_probs=103.1
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecC-----CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~-----~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +.+||++|++ +.++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 775 7899999985 5677899998875 389999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 72 IYHPNVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 72 i~Hpnv~~~~G~icl~~l~~--~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+|||||+ .+|+||+++|.+ +|+|+++|++||+ +|++||.+.+
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 124 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVL-----GVQDLLDSPN 124 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 9999999 699999999987 7999999999999 9999998764
No 28
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.7e-40 Score=239.38 Aligned_cols=110 Identities=29% Similarity=0.671 Sum_probs=104.4
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+..
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 7899999986 4567899999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++|.++|+|++||++||+ +|++||.+.
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~-----sI~sLL~~P 136 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALL-----SIQALLSDP 136 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCEEEchhhcccCCCCCcHHHHHH-----HHHHHHhCC
Confidence 899999999999999999999999 999999875
No 29
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2e-39 Score=226.75 Aligned_cols=110 Identities=25% Similarity=0.556 Sum_probs=103.0
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCC-----CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMIND-----GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~-----d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
+.+||+||++ +.+++|+++.+.++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 7899999985 56778999999876 999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 76 NVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nv~~~~G~icl~~l~~--~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||+ .+|+||+++|.+ +|+|++||++||+ +|++||.+.+
T Consensus 91 nV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~-----~i~~ll~~P~ 130 (163)
T 3rcz_B 91 NVY-PSGTVCLSILNEEEGWKPAITIKQILL-----GIQDLLDDPN 130 (163)
T ss_dssp TBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred CCC-CCCcEeccccCCCCCcCCcCcHHHHHH-----HHHHHHhCCC
Confidence 999 799999999975 4999999999999 9999998754
No 30
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-39 Score=232.33 Aligned_cols=110 Identities=28% Similarity=0.660 Sum_probs=101.6
Q ss_pred HHHHHHHHHHh---cCC-------------CCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEE
Q 033374 4 PSKRREMDLMK---LMM-------------SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67 (120)
Q Consensus 4 ~~kRl~~el~~---~~~-------------~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 67 (120)
+.+||++|+++ .+. .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 67899999964 333 69999999999999999999999999999999999999999999999999
Q ss_pred EecCcccCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 68 FVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 68 f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|.|+||||||+..+|+||+++|.++|+|++||++||+ +|++||.+.
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~sll~~p 158 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALL-----SIQAMLADP 158 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHH-----HHHHHHHSC
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHH-----HHHHHHhCC
Confidence 9999999999955899999999999999999999999 999999875
No 31
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.2e-39 Score=228.32 Aligned_cols=111 Identities=28% Similarity=0.656 Sum_probs=102.2
Q ss_pred CHHHHHHHHHH---hcCCCCcEEEecC-CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc
Q 033374 3 SPSKRREMDLM---KLMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 3 ~~~kRl~~el~---~~~~~~i~~~~~~-~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
.+.+||++|++ +.+++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 17 ~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~ 96 (172)
T 2awf_A 17 RGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96 (172)
T ss_dssp TTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC
Confidence 37899998886 4577899999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCC-------------CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 79 ELSGSVCLDVIN-------------QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 79 ~~~G~icl~~l~-------------~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|. ++|+|+++|++||+ +|++||.+.+
T Consensus 97 -~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~-----sI~sll~~Pn 144 (172)
T 2awf_A 97 -KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI-----SVISMLADPN 144 (172)
T ss_dssp -TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHH-----HHHHHHSCC-
T ss_pred -CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHH-----HHHHHHHCcC
Confidence 69999999996 68999999999999 9999998753
No 32
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=234.19 Aligned_cols=110 Identities=51% Similarity=1.014 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033374 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 4 ~~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~ 83 (120)
+.+||++|++++..+|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|+
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999888889999887 578999999999999999999999999999999999999999999999999944999
Q ss_pred EEccCCCCCCCCCCChhhccccCCHHH-HHHHHhccC
Q 033374 84 VCLDVINQTWSPMFGKPSILFPSTHVT-ICQMLQSSY 119 (120)
Q Consensus 84 icl~~l~~~W~p~~ti~~vl~~~~~~~-i~~ll~~~~ 119 (120)
||+++|.++|+|+++|++||+ + |++||.+..
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~-----s~I~~Ll~~Pn 136 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFE-----SFLPQLLAYPN 136 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHH-----THHHHHHHSCC
T ss_pred EeccccccCCCCCCCHHHHHH-----HHHHHHHhCCC
Confidence 999999999999999999999 9 999998753
No 33
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.4e-39 Score=225.71 Aligned_cols=110 Identities=18% Similarity=0.318 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhc---CCCC-cEEEe-cCCC--ceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCc
Q 033374 4 PSKRREMDLMKL---MMSD-YKVEM-INDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (120)
Q Consensus 4 ~~kRl~~el~~~---~~~~-i~~~~-~~~d--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 76 (120)
+.+||+||++++ +.+| +++.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 789999999754 4566 77877 4454 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 77 VDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 77 v~~~~G~icl~~l~--~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|+..+|+||+++|+ ++|+|++||++||+ +|++||.++
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~-----sI~~ll~~~ 144 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQ-----ELRRLMMSK 144 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHH-----HHHHHHTST
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHH-----HHHHHHccC
Confidence 99559999999998 89999999999999 999999764
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.6e-39 Score=239.54 Aligned_cols=114 Identities=25% Similarity=0.741 Sum_probs=105.8
Q ss_pred CCC-HHHHHHHHHHhc------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 1 Ms~-~~kRl~~el~~~------~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
|++ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 443 689999999755 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||||+..+|+||+++|.++|+|+++|++||+ +|++||.+..
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~-----sI~~ll~~pn 174 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-----SLQALLAAAE 174 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHH-----HHHHHhcCCC
Confidence 9999955999999999999999999999999 9999998753
No 35
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.8e-39 Score=224.88 Aligned_cols=113 Identities=27% Similarity=0.506 Sum_probs=104.0
Q ss_pred CCC-HHHHHHHHHH---hcCCCCcEEEecC-----CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~-~~kRl~~el~---~~~~~~i~~~~~~-----~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
|++ +.+||++|++ +.+++|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 664 6899999986 5567899998864 589999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeEEccCCCC--CCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 72 IYHPNVDELSGSVCLDVINQ--TWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 72 i~Hpnv~~~~G~icl~~l~~--~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+|||||+ .+|+||+++|.+ +|+|+++|++||+ +|++||.+.+
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 127 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILL-----GIQELLNEPN 127 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHH-----HHHHHHhCCC
Confidence 9999999 699999999985 8999999999999 9999998764
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-39 Score=228.37 Aligned_cols=111 Identities=23% Similarity=0.509 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHhcC-CCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 2 SSPSKRREMDLMKLM-MSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 2 s~~~kRl~~el~~~~-~~~i~~~-~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+.+||++|++++. ++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 25 ~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~- 102 (180)
T 2nvu_C 25 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID- 102 (180)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC-
T ss_pred cHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC-
Confidence 347899999999874 4689998 7889999999998 99999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|.++|+|+++|++||+ +|++||.+.+
T Consensus 103 ~~G~iCl~iL~~~W~p~~~i~~vL~-----si~~ll~~Pn 137 (180)
T 2nvu_C 103 LEGNVALNILREDWKPVLTINSIIY-----GLQYLFLEPN 137 (180)
T ss_dssp TTSBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCCcEEcccccccCCCCCCHHHHHH-----HHHHHHhCCC
Confidence 6999999999999999999999999 9999998764
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=7.4e-39 Score=225.58 Aligned_cols=113 Identities=21% Similarity=0.511 Sum_probs=100.8
Q ss_pred CCC-HHHHHHHHHHh----c-C------CC---CcEEEe-cCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCC
Q 033374 1 MSS-PSKRREMDLMK----L-M------MS---DYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 1 Ms~-~~kRl~~el~~----~-~------~~---~i~~~~-~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP 64 (120)
||+ +.+||++|+++ . + +. ++.+.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 665 78999999963 3 2 22 356777 7789999999999999999999999999999999999999
Q ss_pred eEEEec-CcccCcccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 65 SIGFVN-KIYHPNVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 65 ~v~f~t-~i~Hpnv~~~~G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+|.| ++|||||+..+|+||+++|. ++|+|++||++||+ +|++||.+.
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~-----si~~ll~~p 133 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVH-----AVWRLLREP 133 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHH-----HHHHHHhCC
Confidence 999999 99999996469999999998 89999999999999 999999875
No 38
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=9.1e-39 Score=221.66 Aligned_cols=109 Identities=27% Similarity=0.513 Sum_probs=102.3
Q ss_pred HHHHHHHHHH---hcCCCCcEE-EecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 4 PSKRREMDLM---KLMMSDYKV-EMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~-~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+||++|++ +.+++|+.+ .++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~- 82 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD- 82 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC-
Confidence 6799999886 456789999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCC-CCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVI-NQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++| .++|+|+++|++||+ +|++||.+..
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 118 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLE-----ALNVLVNRPN 118 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHH-----HHHHHHhCCC
Confidence 5999999999 899999999999999 9999998753
No 39
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=8.2e-39 Score=218.25 Aligned_cols=112 Identities=20% Similarity=0.375 Sum_probs=99.0
Q ss_pred CCC--HHHHHHHHHHhc----CCCCcEEEecC-C--CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 1 MSS--PSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 1 Ms~--~~kRl~~el~~~----~~~~i~~~~~~-~--d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
||+ +.+||+||++++ +..|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 664 789999999754 45689998853 3 49999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCeE--EccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 72 IYHPNVDELSGSV--CLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 72 i~Hpnv~~~~G~i--cl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|||||+..+|+| |+++|. +|+|++||++||+ +|++||.+.
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~-----~i~~ll~~p 124 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLL-----DLRKEMATP 124 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHH-----HHHHHHTSH
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHH-----HHHHHHcCC
Confidence 9999999545999 898886 8999999999999 999999874
No 40
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.8e-39 Score=235.64 Aligned_cols=113 Identities=31% Similarity=0.684 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHh---cCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcc
Q 033374 2 SSPSKRREMDLMK---LMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 2 s~~~kRl~~el~~---~~~~~i~~~~~~~-d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 77 (120)
|++.+||++|+++ .+++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp CTTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 4678999999864 5678999999876 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 78 DELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
+..+|+||+++|.++|+|++||++||+ +|++||.+..
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~-----sI~sLL~~Pn 117 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALI-----SLQALLQSPE 117 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHH-----HHHHHHTSCC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHH-----HHHHHHhCCC
Confidence 944999999999999999999999999 9999998753
No 41
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=224.05 Aligned_cols=111 Identities=18% Similarity=0.316 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHhc---CCCC-cEEEe-cCCC--ceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 3 SPSKRREMDLMKL---MMSD-YKVEM-INDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 3 ~~~kRl~~el~~~---~~~~-i~~~~-~~~d--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
.+.+||++|++++ +.+| +++.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP 114 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 114 (170)
T ss_dssp CHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccC
Confidence 3789999999744 4567 67777 4554 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCC--CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 76 NVDELSGSVCLDVIN--QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 76 nv~~~~G~icl~~l~--~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
||+..+|+||+++|. ++|+|++||++||+ +|++||.++
T Consensus 115 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~-----sI~~ll~~~ 154 (170)
T 2hlw_A 115 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQ-----ELRRLMMSK 154 (170)
T ss_dssp SBCSSSCBBCTTTCHHHHTCCSSCCHHHHHH-----HHHHHHHST
T ss_pred CEeCCCCEEEhhhcCCCCCCCccCcHHHHHH-----HHHHHHccC
Confidence 998569999999998 89999999999999 999999874
No 42
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-39 Score=227.33 Aligned_cols=110 Identities=54% Similarity=0.964 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCe
Q 033374 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (120)
Q Consensus 4 ~~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~ 83 (120)
+.+||++|++++....+.+ ..++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|+
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5799999998776555555 457899999999999999999999999999999999999999999999999999955999
Q ss_pred EEccCCCCCCCCCCChhhccccCCHHHH-HHHHhccC
Q 033374 84 VCLDVINQTWSPMFGKPSILFPSTHVTI-CQMLQSSY 119 (120)
Q Consensus 84 icl~~l~~~W~p~~ti~~vl~~~~~~~i-~~ll~~~~ 119 (120)
||+++|.++|+|+++|++||+ +| ++||.+.+
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~-----sil~~ll~~Pn 123 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFD-----VFLPQLLRYPN 123 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHH-----THHHHHHHSCC
T ss_pred EeccccccCCCCCCcHHHHHH-----HHHHHHHhCCC
Confidence 999999999999999999999 97 78887653
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.5e-38 Score=219.09 Aligned_cols=110 Identities=21% Similarity=0.345 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHhc----CCCCcEEEecC-C--CceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccC
Q 033374 3 SPSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (120)
Q Consensus 3 ~~~kRl~~el~~~----~~~~i~~~~~~-~--d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 75 (120)
.+.+||++|++++ +.+|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 21 ~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 100 (156)
T 2q0v_A 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100 (156)
T ss_dssp CHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccC
Confidence 4789999999754 45689998853 3 599999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeE---EccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 76 NVDELSGSV---CLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 76 nv~~~~G~i---cl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
||+ .+|+| |+++|. +|+|+++|++||+ +|++||.+..
T Consensus 101 NV~-~~G~icisCL~iL~-~WsP~~ti~~vL~-----sI~~ll~~Pn 140 (156)
T 2q0v_A 101 CVD-NCGRVIKNNLHILK-NWNRNYTIETILI-----SLRQEMLSSA 140 (156)
T ss_dssp TBC-TTSBBCGGGSHHHH-TCCTTCCHHHHHH-----HHHHHTTSTT
T ss_pred CCc-cCCeEehhhccccc-CCCCcCcHHHHHH-----HHHHHHhCCC
Confidence 999 68999 888887 5999999999999 9999998864
No 44
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=5e-38 Score=220.30 Aligned_cols=109 Identities=25% Similarity=0.546 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHh---cCCCCcEEEec-CCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcc
Q 033374 2 SSPSKRREMDLMK---LMMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (120)
Q Consensus 2 s~~~kRl~~el~~---~~~~~i~~~~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 77 (120)
+.+.|||++|+++ .++.|+++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 4478999999964 46789999865 57899999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCC------CCCCCCChhhccccCCHHHHHHHHhc
Q 033374 78 DELSGSVCLDVINQ------TWSPMFGKPSILFPSTHVTICQMLQS 117 (120)
Q Consensus 78 ~~~~G~icl~~l~~------~W~p~~ti~~vl~~~~~~~i~~ll~~ 117 (120)
+ .+|+||+++|.+ +|+|++||++||+ +|++||.+
T Consensus 92 ~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~-----~i~~ll~~ 131 (167)
T 3fn1_B 92 T-ETGEICLSLLREHSIDGTGWAPTRTLKDVVW-----GLNSLFTD 131 (167)
T ss_dssp C-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHH-----HHHHTTTT
T ss_pred C-CCCEEechhhccCCCCCCCCCCcCcHHHHHH-----HHHHHHcC
Confidence 9 699999999975 7999999999999 99999987
No 45
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.3e-37 Score=222.28 Aligned_cols=110 Identities=26% Similarity=0.511 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHhcC-CCCcEEE----ecCCCce---EEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 2 SSPSKRREMDLMKLM-MSDYKVE----MINDGMQ---EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 2 s~~~kRl~~el~~~~-~~~i~~~----~~~~d~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
+++.+||++|++++. ++|+++. ++++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 28 s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 558999999999875 4689988 7889999 9999997 88899999999999999999999999999999999
Q ss_pred cCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
||||+ .+|+||+++|.++|+|++||++||+ +|++||.+.
T Consensus 107 HPnV~-~~G~iCl~iL~~~W~p~~~i~~vL~-----~i~~ll~~p 145 (190)
T 3o2u_A 107 HPNID-LKGNVCLNILREDWSPALDLQSIIT-----GLLFLFLEP 145 (190)
T ss_dssp CTTBC-TTSBBCCGGGTTTCCTTCCHHHHHH-----HHHHHHHSC
T ss_pred cCCCC-CCCeEechhccCCCCCCCCHHHHHH-----HHHHHHhCC
Confidence 99999 6999999999999999999999999 999999875
No 46
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=9e-38 Score=216.45 Aligned_cols=109 Identities=28% Similarity=0.615 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhc---CCCCcEEEe-cCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccC
Q 033374 4 PSKRREMDLMKL---MMSDYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (120)
Q Consensus 4 ~~kRl~~el~~~---~~~~i~~~~-~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 79 (120)
+.+||++|++++ +++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID- 80 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC-
Confidence 568999999865 456887554 6789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 80 LSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|. ++|+|++|+++||+ +|++||.+..
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~-----~i~~ll~~p~ 116 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQ-----SLIALVNDPQ 116 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHH-----HHHHHHcCCC
Confidence 69999999996 89999999999999 9999998753
No 47
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.4e-37 Score=218.11 Aligned_cols=111 Identities=24% Similarity=0.507 Sum_probs=99.2
Q ss_pred CCC-HHHHHHHHHHhc---C------------CCCcEEEecCCCceEEEEEEeCCCCCCCC--CCEEEEEEeCCCCCCCC
Q 033374 1 MSS-PSKRREMDLMKL---M------------MSDYKVEMINDGMQEFYVEFNGPKESSYQ--GGVWKIRVELPDAYPYK 62 (120)
Q Consensus 1 Ms~-~~kRl~~el~~~---~------------~~~i~~~~~~~d~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~YP~~ 62 (120)
||+ +.|||++|++++ + ..++.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 665 689999998633 3 56889999999999999999999999999 99999999999999999
Q ss_pred CCeEEEecCcccCcccCCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHh
Q 033374 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 63 pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~ 116 (120)
||+|+|.|++|||||+ .+|+||+++|.++|+|+++++++|+ ..|++|+.
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll----~~l~~l~~ 133 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIK----LVLDRVFS 133 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHH----HHHHHHHT
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHH----HHHHHHHh
Confidence 9999999999999999 7999999999999999999999866 04555554
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.1e-36 Score=237.97 Aligned_cols=112 Identities=31% Similarity=0.692 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCccc
Q 033374 2 SSPSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (120)
Q Consensus 2 s~~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 78 (120)
|.+.|||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 347899999986 55778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCCChhhccccCCHHHHHHHHhccC
Q 033374 79 ELSGSVCLDVINQTWSPMFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
.+|+||+++|.++|+|++|+++||+ +|++||.++.
T Consensus 82 -~~G~iCl~il~~~W~p~~~i~~vL~-----~i~~ll~~pn 116 (399)
T 4ddg_A 82 -SNGSISLDILRSQWSPALTISKVLL-----SICSLLCDPN 116 (399)
T ss_dssp -TTCBBCCGGGTTSCCTTCCHHHHHH-----HHHHHHHSCC
T ss_pred -CCCeEeCcccccCCCccccHHHHHH-----HHHHHHcCCC
Confidence 6999999999999999999999999 9999998753
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=2.5e-37 Score=220.15 Aligned_cols=109 Identities=22% Similarity=0.437 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhc---C---CCCcEEEecCCCceEEEEEEeCC-CCCCCCC-----------CEEEEEEeCCCCCCCCCCe
Q 033374 4 PSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGP-KESSYQG-----------GVWKIRVELPDAYPYKSPS 65 (120)
Q Consensus 4 ~~kRl~~el~~~---~---~~~i~~~~~~~d~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp~~YP~~pP~ 65 (120)
+.+||++|++++ + ..++++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||++||+
T Consensus 28 a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~ 107 (186)
T 1zuo_A 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPF 107 (186)
T ss_dssp HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCe
Confidence 689999999754 3 46799999999999999999998 9999998 8999999999999999999
Q ss_pred EEEecCcccC-cccCCCCeEEccCCC-CCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 66 IGFVNKIYHP-NVDELSGSVCLDVIN-QTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 66 v~f~t~i~Hp-nv~~~~G~icl~~l~-~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
|+|.|++||| ||+ .+|+||+++|. ++|+|++||++||+ +|++||.++
T Consensus 108 V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~-----sI~slL~~p 156 (186)
T 1zuo_A 108 VRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIM-----QINATLVKG 156 (186)
T ss_dssp EEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHH-----HHHHHHHHT
T ss_pred EEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHH-----HHHHHHcCC
Confidence 9999999999 699 69999999997 78999999999999 999999874
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-36 Score=214.13 Aligned_cols=107 Identities=21% Similarity=0.482 Sum_probs=94.8
Q ss_pred HHHHHHHHHH---hcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCC
Q 033374 4 PSKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (120)
Q Consensus 4 ~~kRl~~el~---~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~ 80 (120)
+.+||++|++ +.+++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |||++ .
T Consensus 15 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~-~ 91 (187)
T 2f4w_A 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK-C 91 (187)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec-c
Confidence 7899999986 5567899999999999999999999999999999999999999999999999999998 99999 6
Q ss_pred CCeEEccCC---CCCCCCCCChhhccccCCHHHHHHHHhcc
Q 033374 81 SGSVCLDVI---NQTWSPMFGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 81 ~G~icl~~l---~~~W~p~~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
+|+||+++| .++|+|+++|++||+ +|++||.++
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~-----si~sll~~p 127 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILT-----GLLSFMVEK 127 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHH-----HHHHHHHSC
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHH-----HHHHHhcCC
Confidence 999999999 689999999999999 999999875
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=6.7e-35 Score=221.79 Aligned_cols=107 Identities=21% Similarity=0.502 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhc---CCC----CcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC-----
Q 033374 4 PSKRREMDLMKL---MMS----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK----- 71 (120)
Q Consensus 4 ~~kRl~~el~~~---~~~----~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~----- 71 (120)
+.+||++|++++ +++ ++.+.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 789999998643 444 45677889999999999999999999999999999999999999999999998
Q ss_pred cccCcccCCCCeEEccCCC-------CCCCCCC-ChhhccccCCHHHHHHHHh
Q 033374 72 IYHPNVDELSGSVCLDVIN-------QTWSPMF-GKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 72 i~Hpnv~~~~G~icl~~l~-------~~W~p~~-ti~~vl~~~~~~~i~~ll~ 116 (120)
+|||||+ .+|+||+++|. ++|+|++ ||++||+ +|++||.
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLl-----sIqsLL~ 203 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLV-----SVQSLIL 203 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHH-----HHHHHTS
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHH-----HHHHHHc
Confidence 9999999 69999999997 6899999 8999999 9999995
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=1.6e-29 Score=175.40 Aligned_cols=96 Identities=18% Similarity=0.317 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEecC-cc
Q 033374 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (120)
Q Consensus 5 ~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (120)
.+||++|++++.. ++.+.++|+..|.+.+.||+||+|+|| .|.++|.||++||++||+|+|.++ ++
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 7899999986655 466777899999999999999999999 999999999999999999999998 99
Q ss_pred cCcccCCCCeEEccCC-CC---CCCCCCChhhccc
Q 033374 74 HPNVDELSGSVCLDVI-NQ---TWSPMFGKPSILF 104 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l-~~---~W~p~~ti~~vl~ 104 (120)
||||| .+|+||+|+| .+ .|+|.++|..+|.
T Consensus 111 hpnmY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 111 TAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp CSSBC-TTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCC-CCCcEechhhccccccccCCccCHHHHHh
Confidence 99999 6999999999 43 4569999999986
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.78 E-value=1.7e-19 Score=125.38 Aligned_cols=93 Identities=18% Similarity=0.365 Sum_probs=79.8
Q ss_pred cEEEecCCCceEEEEEEeCCCCCCCCCCE---EEEEEeCCCCCCCCCCeEEEec-------C---cc-cCcccCCCCeEE
Q 033374 20 YKVEMINDGMQEFYVEFNGPKESSYQGGV---WKIRVELPDAYPYKSPSIGFVN-------K---IY-HPNVDELSGSVC 85 (120)
Q Consensus 20 i~~~~~~~d~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t-------~---i~-Hpnv~~~~G~ic 85 (120)
..+...+|...++.+.+.|.-..+|+|+. |.+.|-||.+||++||.|.|.+ + |+ ||||| .+|+||
T Consensus 51 t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD-~~G~I~ 129 (162)
T 3r3q_A 51 TRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID-SNGWIA 129 (162)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBC-TTSBBC
T ss_pred eeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCC-CCCcEe
Confidence 33445567777888888888889999999 8899999999999999997754 1 77 99999 799999
Q ss_pred ccCCCCCCCC-CCChhhccccCCHHHHHHHHhccC
Q 033374 86 LDVINQTWSP-MFGKPSILFPSTHVTICQMLQSSY 119 (120)
Q Consensus 86 l~~l~~~W~p-~~ti~~vl~~~~~~~i~~ll~~~~ 119 (120)
++.|. +|+| ..++.++|. +|+++|.+..
T Consensus 130 lpyL~-~W~p~~s~L~~ll~-----~l~~lf~ep~ 158 (162)
T 3r3q_A 130 LPILH-AWDPAAMNLIMVVQ-----ELMSLLHEPP 158 (162)
T ss_dssp CGGGG-SCCGGGCCHHHHHH-----HHHHTTSCCC
T ss_pred Ccccc-cCCCCcCcHHHHHH-----HHHHHhcCCC
Confidence 99995 6999 689999999 9999998864
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.71 E-value=2.1e-19 Score=122.52 Aligned_cols=86 Identities=16% Similarity=0.374 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCC----------EEEEEEeCCCCCCCCCCeEEEecC-cc
Q 033374 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (120)
Q Consensus 5 ~kRl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (120)
.+||.+|++.+-. +++..+++-..|...+.||+||+|+|+ .|++++.||.+||..||.|+|.+. .+
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4688888865421 122223345568888999999999999 999999999999999999999995 89
Q ss_pred cCcccCCCCeEEccCCCCCCCCCC
Q 033374 74 HPNVDELSGSVCLDVINQTWSPMF 97 (120)
Q Consensus 74 Hpnv~~~~G~icl~~l~~~W~p~~ 97 (120)
|||+| .+|+||++++ |+|.+
T Consensus 113 t~kmY-r~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 113 TVKMY-RGGKICMTTH---FFPLW 132 (168)
T ss_dssp CSSEE-TTTEECCCTT---HHHHH
T ss_pred Ccccc-CCCcEEeccc---cchhh
Confidence 99999 6999999996 66554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.60 E-value=1e-15 Score=104.79 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=71.9
Q ss_pred CCCceEEEEEEeCCCCCCCCCCEEEE--EEeCCCCCCCCCCeEEEecC------cccCcccCCCCeEEccCCCCCCCC-C
Q 033374 26 NDGMQEFYVEFNGPKESSYQGGVWKI--RVELPDAYPYKSPSIGFVNK------IYHPNVDELSGSVCLDVINQTWSP-M 96 (120)
Q Consensus 26 ~~d~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~Hpnv~~~~G~icl~~l~~~W~p-~ 96 (120)
..++..|.++|. .+|+|++|.+ .|-||++||++||.| |.++ ..||||| .+|+||++.|++ |++ .
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~~ 122 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHPQ 122 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTTT
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCCC
Confidence 358999999996 5799999995 899999999999999 7766 5899999 799999999966 987 8
Q ss_pred CChhhccccCCHHHHHHHHhcc
Q 033374 97 FGKPSILFPSTHVTICQMLQSS 118 (120)
Q Consensus 97 ~ti~~vl~~~~~~~i~~ll~~~ 118 (120)
.+|.+++. .+++.+.++
T Consensus 123 snL~~ll~-----~l~~~F~~e 139 (146)
T 3obq_A 123 SDLLGLIQ-----VMIVVFGDE 139 (146)
T ss_dssp CCHHHHHH-----HHHHHHHHS
T ss_pred CCHHHHHH-----HHHHHHhhC
Confidence 89999999 999998876
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.0086 Score=38.88 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHhcC---CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 1 MSSPSKRREMDLMKLM---MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 1 Ms~~~kRl~~el~~~~---~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
|+....+...|+.-+. ...+.+ .++....+.+.+..-.+..-+.-.+.+.+.+|++||..||.+...+
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4344555666665332 333332 2333456666665322222234578899999999999999998765
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.089 Score=34.42 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=30.0
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+.+..+ .-..-.+.+.+.+|++||..+|.|...+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4567777763222 2123578899999999999999999875
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.53 E-value=0.15 Score=32.78 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=29.7
Q ss_pred CceEEEEEEeCCCCCCC--CCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 28 GMQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 28 d~~~w~~~i~gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
+...+.+.+..+.+..- ..-.+.+.+.+|++||..+|.|...+
T Consensus 38 ~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 38 SPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred CCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 35566666753322111 12478899999999999999998876
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=93.87 E-value=0.41 Score=33.45 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecCcccCcccCCCCeEEc
Q 033374 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86 (120)
Q Consensus 7 Rl~~el~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~icl 86 (120)
|+.+|+.++-=.. +.-.+.++....+.+.... |....++|.++.+||.++|.+...-|. |.
T Consensus 5 ~li~Ei~~iGW~~--l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---------- 65 (186)
T 3zqs_A 5 SLIEEIGTLGWDK--LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF---------- 65 (186)
T ss_dssp SHHHHHHHHCGGG--EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC----------
T ss_pred HHHHHHHHhCCce--eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc----------
Confidence 4566665543222 2233567888888887443 678899999999999999977554432 21
Q ss_pred cCCCCCCCCCCChhhccccCCHHHHHHHHh
Q 033374 87 DVINQTWSPMFGKPSILFPSTHVTICQMLQ 116 (120)
Q Consensus 87 ~~l~~~W~p~~ti~~vl~~~~~~~i~~ll~ 116 (120)
.-.|++..++.+++. ..+..|.
T Consensus 66 ---~~~w~~~ssL~~v~~-----qF~~~Le 87 (186)
T 3zqs_A 66 ---CASWTPQSSLISIYS-----QFLAAIE 87 (186)
T ss_dssp ---CCCCCTTCCHHHHHH-----HHHHHHH
T ss_pred ---ccccCCCccHHHHHH-----HHHHHHH
Confidence 125999999999988 7777765
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.04 E-value=0.22 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=29.0
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+.. .+..=..-.+.+.+.+|.+||..+|.|...+
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4677777763 2211112478999999999999999987653
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.03 E-value=0.32 Score=32.62 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCCCCCCCeEEEecC
Q 033374 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.+.+.+.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999987764
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.98 E-value=0.096 Score=34.12 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=27.7
Q ss_pred ceEEEEEEeCCCC-C-CCCCCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 29 MQEFYVEFNGPKE-S-SYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 29 ~~~w~~~i~gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
...+.+.+. +.+ . .-..-.+.+.+.||++||..+|.|....
T Consensus 44 ~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 44 PPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred CcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 345666665 322 1 1112468899999999999999998753
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.45 E-value=0.21 Score=33.29 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.2
Q ss_pred EEEEEEeCCCCCCCCCCeEEEecC
Q 033374 48 VWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
.+.+.+.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588899999999999999988764
No 64
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=56.36 E-value=42 Score=22.98 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEecC
Q 033374 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (120)
Q Consensus 27 ~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (120)
+.-.+|.|.+.|+.+.-...-+=++...+.+.||. |.-.+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 46889999999987654445677788999999975 55555444
No 65
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=54.36 E-value=44 Score=22.04 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=33.1
Q ss_pred CceEEE--EEEeCCCCCCCC-CCEEEEEEeCCCCCCCCCCeEEEecCcc
Q 033374 28 GMQEFY--VEFNGPKESSYQ-GGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (120)
Q Consensus 28 d~~~w~--~~i~gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (120)
-..+|. +.+.|+.|.... .-+=++...+.+.|+. |...+..+.|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 357998 889999888664 4666788889999884 7777766544
No 66
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=38.87 E-value=84 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred cEEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCCCCCCCCCe
Q 033374 20 YKVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPDAYPYKSPS 65 (120)
Q Consensus 20 i~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~~YP~~pP~ 65 (120)
|+.+..+ .+-.+|+++..|..++ |..-|.++|.+.-+.=-|.+-|.
T Consensus 26 I~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 26 ITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp EEEEECSCCSSCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred EEEEEcccCCCCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 3444444 2555999999987665 55679999988875545555444
No 67
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=37.55 E-value=91 Score=20.86 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=26.4
Q ss_pred cEEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCC
Q 033374 20 YKVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPD 57 (120)
Q Consensus 20 i~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~ 57 (120)
|+.+..+ ++-.+|+++..|.+++ |-.-|.++|.+.-+.
T Consensus 27 I~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~vGPi~~G~~kFv~~adp 79 (155)
T 1roc_A 27 ITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 79 (155)
T ss_dssp EEEEECSCCSSCEEEEEEECCCTTSSCTTEEEEEEEECSCCSEEEEEEEEECC
T ss_pred EEEEEcccCCCCcEEEEEEEeCCCcccCceEeeEEEeccccceeEEEEEEcCC
Confidence 3444444 3558999999987765 556788888888744
No 68
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens} SCOP: b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Probab=35.48 E-value=1e+02 Score=21.18 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=31.2
Q ss_pred EEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCCCCCCCCC
Q 033374 21 KVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 21 ~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~~YP~~pP 64 (120)
+.+..+ ++-.+|+++..|.+++ |-.-|.++|.+.-+.=-|.+-|
T Consensus 52 tfEcle~L~~dleWkliYVGSa~s~~~DQ~Ldsv~VGPi~~G~~kFvfeadpPd~~kIP 110 (182)
T 2i32_A 52 TFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIP 110 (182)
T ss_dssp EEEESSCCSSCEEEEEEEESCSSCGGGEEEEEEEEECCCCSEEEEEEEEECCCCGGGSC
T ss_pred EEEEccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEeCCCCcccCC
Confidence 344444 3668999999988765 5567999999888655555555
No 69
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=30.96 E-value=78 Score=23.58 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCC-cEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEeCCCCCCCCCC
Q 033374 7 RREMDLMKLMMSD-YKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 7 Rl~~el~~~~~~~-i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP 64 (120)
|...|+.+..+.+ +++...++ .+.|. +.++.|.+...-+++||.-|+
T Consensus 85 k~l~ei~r~Lp~~~V~i~~~~~-----~l~i~------~g~~~f~l~~l~~~~fP~~~~ 132 (378)
T 1vpk_A 85 DVIQKMVKVLPDEITELSLEGD-----ALVIS------SGSTVFRITTMPADEFPEITP 132 (378)
T ss_dssp -CHHHHHTTCCSSEEEEEEETT-----EEEEE------ETTEEEEEECBCCTTSCCCCC
T ss_pred HHHHHHHHhCCCCcEEEEEeCC-----EEEEE------ECCEEEEEcccChHHCCCCCC
Confidence 5567777665555 55555444 35554 234677777766789997764
No 70
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=30.09 E-value=1.3e+02 Score=20.54 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=26.2
Q ss_pred cEEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCC
Q 033374 20 YKVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPD 57 (120)
Q Consensus 20 i~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~ 57 (120)
|+.+..+ ++-.+|+++..|..++ |..-|.++|.+.-+.
T Consensus 28 I~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ldsv~VGPi~~G~~kFv~~adp 80 (179)
T 2idc_A 28 ITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 80 (179)
T ss_dssp EEEEECSCCSSCEEEEEEECSCTTCGGGCEEEEEEEECSCCSEEEEEEEEECC
T ss_pred EEEEEcccCCCCcEEEEEEEcCCCcccCCeEeeEEEECCccceeEEEEEEcCC
Confidence 3344443 3558999999988665 556788888888743
No 71
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=29.82 E-value=57 Score=22.74 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCCEEEEEEeCCCCCCC-----CCCeEEEec
Q 033374 45 QGGVWKIRVELPDAYPY-----KSPSIGFVN 70 (120)
Q Consensus 45 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 70 (120)
+.|.|.|+=.+|--||. .||-|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 36889999999999998 799998873
No 72
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=28.97 E-value=1.4e+02 Score=20.38 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=28.7
Q ss_pred cEEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCCCCCCC
Q 033374 20 YKVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPDAYPYK 62 (120)
Q Consensus 20 i~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~~YP~~ 62 (120)
|+.+..+ ++-.+|+++..|..++ |..-|.++|.+.-+.=.+.+
T Consensus 32 I~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~ 89 (175)
T 2hue_A 32 ITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPSAEL 89 (175)
T ss_dssp EEEEECSCCSSCEEEEEEEESCTTCGGGEEEEEEEEECSCCSEEEEEEEEECCCCGGG
T ss_pred EEEEEcccCCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceeEEEEEEcCCCChhh
Confidence 3444443 3558999999988765 55679999888875433333
No 73
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex; 2.70A {Homo sapiens} SCOP: b.1.22.1
Probab=26.10 E-value=1.6e+02 Score=20.09 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=31.5
Q ss_pred cEEEecC--CCceEEEEEEeCCCCC-------------CCCCCEEEEEEeCCCCCCCCCC
Q 033374 20 YKVEMIN--DGMQEFYVEFNGPKES-------------SYQGGVWKIRVELPDAYPYKSP 64 (120)
Q Consensus 20 i~~~~~~--~d~~~w~~~i~gp~~t-------------py~gg~f~~~i~fp~~YP~~pP 64 (120)
|+.+..+ ++-.+|+++..|..++ |..-|.++|.+.-+.=-|.+-|
T Consensus 29 I~fEc~e~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP 88 (175)
T 2io5_A 29 ITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIP 88 (175)
T ss_dssp EEEEESSCCCSCEEEEEEEECCTTCGGGEEEEEEEEECSCCSEEEEEEEEECCCCGGGSC
T ss_pred EEEEeccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEeCCCChhhCC
Confidence 3444444 3678999999988765 5567999999888655555555
No 74
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=24.10 E-value=1.2e+02 Score=18.46 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCEEEEEEeCCCCCCCCCCeEEEec
Q 033374 46 GGVWKIRVELPDAYPYKSPSIGFVN 70 (120)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t 70 (120)
+..+...+.|+..|+ .+|+|.+--
T Consensus 28 ~R~~~~~V~F~~~F~-~~P~V~v~l 51 (101)
T 2ccv_A 28 TRELAKNITFASPYC-RPPVVLLSI 51 (101)
T ss_dssp CEEEEEEEECSSCCS-SCCEEEEEE
T ss_pred ceEEEEEeEeCcccC-CCCEEEEEe
Confidence 346778899999999 499987754
No 75
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=22.96 E-value=20 Score=21.38 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=9.3
Q ss_pred CCCCCCCeEEE
Q 033374 58 AYPYKSPSIGF 68 (120)
Q Consensus 58 ~YP~~pP~v~f 68 (120)
.||..||+|+.
T Consensus 70 t~Pn~Pp~V~~ 80 (84)
T 1f53_A 70 TYPNRPPKVNS 80 (84)
T ss_dssp CCSSSCCCCCB
T ss_pred ecCCCCCcccE
Confidence 68999999865
No 76
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.32 E-value=18 Score=21.86 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCCcEEEec--CCCceEEEEEEe
Q 033374 5 SKRREMDLMKLMMSDYKVEMI--NDGMQEFYVEFN 37 (120)
Q Consensus 5 ~kRl~~el~~~~~~~i~~~~~--~~d~~~w~~~i~ 37 (120)
.+|+...++++...|+.+.-. ++|+..|.-.|.
T Consensus 39 ekrleekiqklksqgfevrkvkddddidkwidkik 73 (110)
T 2lta_A 39 EKRLEEKIQKLKSQGFEVRKVKDDDDIDKWIDKIK 73 (110)
Confidence 467777777888889887654 468999987775
No 77
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=20.08 E-value=55 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCeEEEec---CcccCcccCCCCeEEccCCCC
Q 033374 62 KSPSIGFVN---KIYHPNVDELSGSVCLDVINQ 91 (120)
Q Consensus 62 ~pP~v~f~t---~i~Hpnv~~~~G~icl~~l~~ 91 (120)
.||.|.+.- .--|++|. .+|++|+++|.+
T Consensus 43 ~PP~v~v~i~~~~~t~~~i~-~~~~F~Vnvl~~ 74 (157)
T 3pft_A 43 EPPLVAFAVQNSSTTWPKLK-DLPSLGISVLGE 74 (157)
T ss_dssp TTTEEEEEEETTCSSHHHHT-TSSCEEEEECBT
T ss_pred CCcEEEEEECCCCchHHHHH-hCCEEEEEECCH
Confidence 688887752 46799999 699999999964
Done!