Citrus Sinensis ID: 033375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccEEEccccHHHHHHccccccccEEEEEEEEccccccccccccEEEEEEEEEccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHEHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccEEcHHHHHHHHHcccccccEEEEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEcccc
Coil and Loop (DISEMBL)
mvektkgrkeevVTREFTINLHKrlhgctfkkkaPKAIKEIRKFAEKamgtkdvrvDVKLNKQIWsrgirsvpKRVRVRIARRRNDDEDAKEELYSLVTvaeippeglrglgtkvieded
Flexible Loop (DISEMBL)
mvektkgrkeevvtreftinlhkrlhgctfkkkapkAIKEIRKFaekamgtkdvrvdvklnkqiwsrgirsvpkrvrvriarrrnddedakeelyslvtvaeippeglrglgtkvieded
Low Complexity Region (SEG)
MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKrvrvriarrrNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED
Disordered region (IsUnstruct)
***********VVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA************LYSLVTVAEI*****************
Disordered Region (DISOPRED)
***********VVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARR******AKEELYSLVTVAEIPPEGLRGL*********
Disordered Region (DISEMBL)
**********EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED
Disordered Region (DISPRO)
*******RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIE***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
P51420	119	60S ribosomal protein L31	yes	no	0.991	1.0	0.85	5e-53
O65071	120	60S ribosomal protein L31	N/A	no	1.0	1.0	0.791	9e-53
Q9M573	121	60S ribosomal protein L31	N/A	no	0.966	0.958	0.853	1e-52
Q9STR1	119	60S ribosomal protein L31	yes	no	0.991	1.0	0.841	1e-52
Q9SLL7	119	60S ribosomal protein L31	no	no	0.991	1.0	0.831	3e-52
P46290	120	60S ribosomal protein L31	N/A	no	1.0	1.0	0.9	5e-49
Q9MAV7	121	60S ribosomal protein L31	N/A	no	1.0	0.991	0.875	9e-47
Q9XGL4	119	60S ribosomal protein L31	N/A	no	0.958	0.966	0.641	6e-38
P45841	116	60S ribosomal protein L31	N/A	no	0.958	0.991	0.641	3e-37
Q9IA76	124	60S ribosomal protein L31	N/A	no	0.908	0.879	0.610	1e-33

>sp|P51420|RL313_ARATH 60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 112/120 (93%), Gaps = 1/120 (0%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           M EK KGRKEEV+TRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MSEK-KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 59

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NKQIWS+GIR  P+R+RVR+AR+RNDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+ED
Sbjct: 60  NKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

Arabidopsis thaliana (taxid: 3702)

>sp|O65071|RL31_PICMA 60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1

 Score =  204 bits (520), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 112/120 (93%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEK K R+ EV TRE+TINLH+RLHGCTFKK APKA+KEIRKFA+KAMGT DVR+DVKL
Sbjct: 1   MVEKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK +WSRGIRSVP+R+RVRI+R+RND+EDAK+ELYS+VTVAE+PPEGL GLGTK+IE+ED
Sbjct: 61  NKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120

Picea mariana (taxid: 3335)

>sp|Q9M573|RL31_PERFR 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 111/116 (95%)

Query: 5   TKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQI 64
           +K RKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNK I
Sbjct: 6   SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHI 65

Query: 65  WSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           WSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP  GL+GLGT+VI++E+
Sbjct: 66  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

Perilla frutescens (taxid: 48386)

>sp|Q9STR1|RL312_ARATH 60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=3 SV=1

 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 111/120 (92%), Gaps = 1/120 (0%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           M EK KGRKEEVVTRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKL
Sbjct: 1   MSEK-KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKL 59

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NKQIWS+GIR  P+R+RVR+AR+RNDDEDAKEE +SLVTVAEIP EGL GLGTK+IE+ED
Sbjct: 60  NKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLL7|RL311_ARATH 60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=3 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 110/119 (92%)

Query: 2   VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 61
           +EK KGRKEEVVTRE+TINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLN
Sbjct: 1   MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLN 60

Query: 62  KQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           KQIWS+GIR  P+R+RVR+AR+RNDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+E+
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119

Arabidopsis thaliana (taxid: 3702)

>sp|P46290|RL31_NICGU 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 116/120 (96%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           M +KTKGRKEEVVTRE+TINLHKRLH CTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NKQIWSRGIRSVP+RVRVRIAR+RNDDEDAKEELYSLVTVAEIP +GL+GLGTK+IEDED
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120

Nicotiana glutinosa (taxid: 35889)

>sp|Q9MAV7|RL31_PANGI 60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1

 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 115/120 (95%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NKQIWSRGIRSVP+RVRVRIAR+RNDDEDAKEELYSLVTVA+IP   L+GLG ++IE++D
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

Panax ginseng (taxid: 4054)

>sp|Q9XGL4|RL31_CYAPA 60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1

 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 3   EKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 62
           E  K R  E+VTRE+TINLHKRLHG  FKK+AP+A+KEI+KFA K MGT DVRVD +LNK
Sbjct: 5   ENKKSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNK 64

Query: 63  QIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
            +W++GIRSVP RVRVR+AR+RNDDEDAKE+LY+LVT   +P    +GL T+ ++ E
Sbjct: 65  FVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQNVDAE 119

Cyanophora paradoxa (taxid: 2762)

>sp|P45841|RL31_CHLRE 60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 94/117 (80%), Gaps = 2/117 (1%)

Query: 2   VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 61
           + K K R +E VTRE+TI+L KRLH  +FKK APKA+KEIRKFA K MGT DVR+DVKLN
Sbjct: 1   MAKDKSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLN 60

Query: 62  KQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
           K +WS+GI++VP R+R+ I+RRRNDDEDAKEE+YS VTVAE   +  +G GT V++D
Sbjct: 61  KAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9IA76|RL31_PAROL 60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 90/113 (79%), Gaps = 4/113 (3%)

Query: 3   EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+AIKEIRKFA K MGT DVR+D +L
Sbjct: 8   EKKKGRSAINEVVTREYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRL 67

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGT 113
           NK +WS+G+R+VP R+RVR++R+RN+DED+  +LY+LVT   +P    +GL T
Sbjct: 68  NKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTCKGLQT 118

Paralichthys olivaceus (taxid: 8255)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
449435816	121	PREDICTED: 60S ribosomal protein L31-lik	1.0	0.991	0.916	3e-57
449446560	120	PREDICTED: 60S ribosomal protein L31-lik	1.0	1.0	0.916	3e-57
255561024	119	60S ribosomal protein L31, putative [Ric	0.991	1.0	0.915	1e-56
225445005	120	PREDICTED: 60S ribosomal protein L31 [Vi	1.0	1.0	0.9	3e-56
147840662	120	hypothetical protein VITISV_007877 [Viti	1.0	1.0	0.883	9e-55
351720868	120	uncharacterized protein LOC100499742 [Gl	1.0	1.0	0.875	2e-54
351720853	120	uncharacterized protein LOC100305583 [Gl	1.0	1.0	0.866	8e-54
351721278	120	uncharacterized protein LOC100306335 [Gl	1.0	1.0	0.866	1e-53
255546227	120	60S ribosomal protein L31, putative [Ric	1.0	1.0	0.941	2e-53
359487261	121	PREDICTED: 60S ribosomal protein L31-lik	1.0	0.991	0.851	2e-53

>gi|449435816|ref|XP_004135690.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Cucumis sativus] gi|449435818|ref|XP_004135691.1| PREDICTED: 60S ribosomal protein L31-like isoform 2 [Cucumis sativus] gi|449489849|ref|XP_004158436.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Cucumis sativus] gi|449489851|ref|XP_004158437.1| PREDICTED: 60S ribosomal protein L31-like isoform 2 [Cucumis sativus]

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 118/120 (98%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK IWSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP EGL+GLGTKVI+DE+
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIDDEE 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446560|ref|XP_004141039.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Cucumis sativus] gi|449446562|ref|XP_004141040.1| PREDICTED: 60S ribosomal protein L31-like isoform 2 [Cucumis sativus] gi|449488001|ref|XP_004157907.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Cucumis sativus] gi|449488003|ref|XP_004157908.1| PREDICTED: 60S ribosomal protein L31-like isoform 2 [Cucumis sativus]

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 117/120 (97%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFAE AMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAENAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK IWSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP EGL+GLGTKVIE+ED
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIEEED 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561024|ref|XP_002521524.1| 60S ribosomal protein L31, putative [Ricinus communis] gi|223539202|gb|EEF40795.1| 60S ribosomal protein L31, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/119 (91%), Positives = 116/119 (97%)

Query: 2   VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 61
           +EKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLN
Sbjct: 1   MEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLN 60

Query: 62  KQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           KQIWSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP EGL GLGTK+IEDED
Sbjct: 61  KQIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPSEGLGGLGTKIIEDED 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445005|ref|XP_002282984.1| PREDICTED: 60S ribosomal protein L31 [Vitis vinifera]

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 117/120 (97%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK IWSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP EGL+GL TK+IE++D
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLETKIIEEDD 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840662|emb|CAN62000.1| hypothetical protein VITISV_007877 [Vitis vinifera]

 Score =  217 bits (552), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 115/120 (95%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MV KTKGRKEEVVTR +TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MVXKTKGRKEEVVTRVYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK IWSRGIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTVAEIP EGL+GL TK+IE++D
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLETKIIEEDD 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720868|ref|NP_001235399.1| uncharacterized protein LOC100499742 [Glycine max] gi|255626227|gb|ACU13458.1| unknown [Glycine max]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 114/120 (95%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEK KGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKL
Sbjct: 1   MVEKAKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK +WS+GIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTV EIP + L+GLGTKVI+DED
Sbjct: 61  NKAVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKDELKGLGTKVIDDED 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720853|ref|NP_001237446.1| uncharacterized protein LOC100305583 [Glycine max] gi|356498214|ref|XP_003517948.1| PREDICTED: 60S ribosomal protein L31-like [Glycine max] gi|255625981|gb|ACU13335.1| unknown [Glycine max]

 Score =  213 bits (543), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 104/120 (86%), Positives = 114/120 (95%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEK KGRKEEVVTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKL
Sbjct: 1   MVEKAKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK +WS+GIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTV EIP + L+GLGTKVI+DED
Sbjct: 61  NKFVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKDELKGLGTKVIDDED 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721278|ref|NP_001237204.1| uncharacterized protein LOC100306335 [Glycine max] gi|255628235|gb|ACU14462.1| unknown [Glycine max]

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/120 (86%), Positives = 113/120 (94%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEK KGRKEEVVTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKL
Sbjct: 1   MVEKAKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NK +WS+GIRSVP+R+RVRIAR+RNDDEDAKEELYSLVTV EIP E L+GL TKVI+DED
Sbjct: 61  NKAVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLETKVIDDED 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546227|ref|XP_002514173.1| 60S ribosomal protein L31, putative [Ricinus communis] gi|223546629|gb|EEF48127.1| 60S ribosomal protein L31, putative [Ricinus communis]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 120/120 (100%)

Query: 1   MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           NKQIWSRGIRSVP+R+RVRIARRRNDDEDAKEELYSLVTVAEIPPEGL+G+GTK+IEDED
Sbjct: 61  NKQIWSRGIRSVPRRIRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLKGMGTKIIEDED 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487261|ref|XP_003633550.1| PREDICTED: 60S ribosomal protein L31-like [Vitis vinifera] gi|297736224|emb|CBI24862.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 116/121 (95%), Gaps = 1/121 (0%)

Query: 1   MVEKT-KGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVK 59
           MVEK+ K RKEE+VTRE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVK
Sbjct: 1   MVEKSNKARKEEIVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 60  LNKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
           LNK IWSRGIRSVP+R+RVRIAR+RND+EDAKEEL+SLVTVAE+PPEGL+GL TK+I+DE
Sbjct: 61  LNKHIWSRGIRSVPRRIRVRIARKRNDEEDAKEELFSLVTVAEVPPEGLKGLETKIIDDE 120

Query: 120 D 120
           D
Sbjct: 121 D 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2165051	119	AT5G56710 [Arabidopsis thalian	0.991	1.0	0.791	2.1e-45
TAIR|locus:2136809	119	AT4G26230 [Arabidopsis thalian	0.991	1.0	0.783	4.4e-45
TAIR|locus:2052000	119	AT2G19740 [Arabidopsis thalian	0.991	1.0	0.773	1.9e-44
UNIPROTKB|F1P4V6	126	RPL31 "Uncharacterized protein	0.95	0.904	0.525	3.1e-28
ZFIN|ZDB-GENE-060331-121	123	rpl31 "ribosomal protein L31"	0.95	0.926	0.508	5e-28
UNIPROTKB|Q56JX3	125	RPL31 "60S ribosomal protein L	0.95	0.912	0.516	1.3e-27
UNIPROTKB|E2R8G3	125	LOC607833 "Uncharacterized pro	0.95	0.912	0.516	1.3e-27
UNIPROTKB|J9NYL5	130	LOC608123 "Uncharacterized pro	0.95	0.876	0.516	1.3e-27
UNIPROTKB|J9P3J8	128	LOC607833 "Uncharacterized pro	0.95	0.890	0.516	1.3e-27
UNIPROTKB|P62899	125	RPL31 "60S ribosomal protein L	0.95	0.912	0.516	1.3e-27

TAIR|locus:2165051 AT5G56710 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 95/120 (79%), Positives = 102/120 (85%)

Query:     1 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             M EK KGRKEEV+TRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL
Sbjct:     1 MSEK-KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 59

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
             NKQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+ED
Sbjct:    60 NKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2136809 AT4G26230 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 94/120 (78%), Positives = 101/120 (84%)

Query:     1 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             M EK KGRKEEVVTRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKL
Sbjct:     1 MSEK-KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKL 59

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
             NKQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTK+IE+ED
Sbjct:    60 NKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2052000 AT2G19740 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 92/119 (77%), Positives = 100/119 (84%)

Query:     2 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 61
             +EK KGRKEEVVTRE+TINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLN
Sbjct:     1 MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLN 60

Query:    62 KQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
             KQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+E+
Sbjct:    61 KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|F1P4V6 RPL31 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 62/118 (52%), Positives = 83/118 (70%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:    10 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 69

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    +GL T  +++
Sbjct:    70 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKGLQTVNVDE 125

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

ZFIN|ZDB-GENE-060331-121 rpl31 "ribosomal protein L31" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 60/118 (50%), Positives = 84/118 (71%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG +FK++AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:     7 EKKKGRSAINEVVTREYTINIHKRIHGISFKRRAPRALKEIRKFAVKEMGTPDVRIDTRL 66

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++G+R+VP           N+DED+  +LY+LVT   +P    +GL T  +++
Sbjct:    67 NKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTYKGLQTVNVDE 122

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q56JX3 RPL31 "60S ribosomal protein L31" [Bos taurus (taxid:9913)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/118 (51%), Positives = 82/118 (69%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:     9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 68

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    69 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R8G3 LOC607833 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/118 (51%), Positives = 82/118 (69%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:     9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 68

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    69 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9NYL5 LOC608123 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/118 (51%), Positives = 82/118 (69%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:    14 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 73

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    74 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 129

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P3J8 LOC607833 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/118 (51%), Positives = 82/118 (69%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:    12 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 71

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    72 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 127

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62899 RPL31 "60S ribosomal protein L31" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/118 (51%), Positives = 82/118 (69%)

Query:     3 EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
             EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct:     9 EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 68

Query:    61 NKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
             NK +W++GIR+VP           N+DED+  +LY+LVT   +P    + L T  +++
Sbjct:    69 NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STR1	RL312_ARATH	No assigned EC number	0.8416	0.9916	1.0	yes	no
O18602	RL31_DROVI	No assigned EC number	0.5658	0.975	0.9140	N/A	no
Q54XB5	RL31_DICDI	No assigned EC number	0.5545	0.9	0.9729	yes	no
P62899	RL31_HUMAN	No assigned EC number	0.5961	0.85	0.816	yes	no
Q9MAV7	RL31_PANGI	No assigned EC number	0.875	1.0	0.9917	N/A	no
P45841	RL31_CHLRE	No assigned EC number	0.6410	0.9583	0.9913	N/A	no
Q6FWF4	RL31_CANGA	No assigned EC number	0.5321	0.8916	0.9469	yes	no
P0C2H8	RL31A_YEAST	No assigned EC number	0.5412	0.8916	0.9469	yes	no
Q9SLL7	RL311_ARATH	No assigned EC number	0.8319	0.9916	1.0	no	no
O65071	RL31_PICMA	No assigned EC number	0.7916	1.0	1.0	N/A	no
P62902	RL31_RAT	No assigned EC number	0.5961	0.85	0.816	yes	no
Q6NUH0	RL31_XENLA	No assigned EC number	0.5961	0.85	0.816	N/A	no
Q1KSC7	RL31_MARMO	No assigned EC number	0.5961	0.85	0.816	N/A	no
Q9URX6	RL31_SCHPO	No assigned EC number	0.5145	0.8416	0.8938	yes	no
Q90YT7	RL31_ICTPU	No assigned EC number	0.6057	0.85	0.816	N/A	no
Q9IA76	RL31_PAROL	No assigned EC number	0.6106	0.9083	0.8790	N/A	no
Q5RBR9	RL31_PONAB	No assigned EC number	0.5961	0.85	0.816	yes	no
Q7KF90	RL31_SPOFR	No assigned EC number	0.6228	0.9333	0.9032	N/A	no
P62901	RL31_PIG	No assigned EC number	0.5961	0.85	0.816	yes	no
P62900	RL31_MOUSE	No assigned EC number	0.5961	0.85	0.816	yes	no
Q56JX3	RL31_BOVIN	No assigned EC number	0.5961	0.85	0.816	yes	no
Q9M573	RL31_PERFR	No assigned EC number	0.8534	0.9666	0.9586	N/A	no
Q9GP16	RL31_HELVI	No assigned EC number	0.6228	0.9333	0.9032	N/A	no
Q9V597	RL31_DROME	No assigned EC number	0.576	0.975	0.9435	yes	no
Q9GN74	RL31_AEDAE	No assigned EC number	0.5794	0.875	0.8467	N/A	no
Q757D7	RL31_ASHGO	No assigned EC number	0.5636	0.9	0.9473	yes	no
Q9XGL4	RL31_CYAPA	No assigned EC number	0.6410	0.9583	0.9663	N/A	no
P46290	RL31_NICGU	No assigned EC number	0.9	1.0	1.0	N/A	no
P0C2H9	RL31B_YEAST	No assigned EC number	0.5412	0.8916	0.9469	yes	no
Q9U332	RL31_CAEEL	No assigned EC number	0.5213	0.9583	0.9426	yes	no
P51420	RL313_ARATH	No assigned EC number	0.85	0.9916	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
pfam01198	83	pfam01198, Ribosomal_L31e, Ribosomal protein L31e	3e-37
cd00463	83	cd00463, Ribosomal_L31e, Eukaryotic/archaeal ribos	2e-30
PTZ00193	188	PTZ00193, PTZ00193, 60S ribosomal protein L31; Pro	2e-19
COG2097	89	COG2097, RPL31A, Ribosomal protein L31E [Translati	6e-18
PRK01192	89	PRK01192, PRK01192, 50S ribosomal protein L31e; Re	3e-11

>gnl|CDD|216358 pfam01198, Ribosomal_L31e, Ribosomal protein L31e

 Score =  120 bits (304), Expect = 3e-37
 Identities = 60/84 (71%), Positives = 68/84 (80%), Gaps = 1/84 (1%)

Query: 10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI 69
          EEVVTRE+TINL KR  G  FKK+AP+AIKEIRKFA K M T DVR+D KLNK IWSRGI
Sbjct: 1  EEVVTREYTINLRKR-KGVPFKKRAPRAIKEIRKFAAKHMKTDDVRIDPKLNKAIWSRGI 59

Query: 70 RSVPKRVRVRIARRRNDDEDAKEE 93
          R+ P RVRVR +R+RNDDED K +
Sbjct: 60 RNPPSRVRVRASRKRNDDEDGKVK 83

Length = 83

>gnl|CDD|199209 cd00463, Ribosomal_L31e, Eukaryotic/archaeal ribosomal protein L31

 Score =  103 bits (259), Expect = 2e-30
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 9  KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRG 68
           EEVV RE+TINL KR H    KK+AP+AIKEIRKFA K M T+DVR+D KLN+ IWSRG
Sbjct: 1  IEEVVEREYTINLRKRKHV-PRKKRAPRAIKEIRKFAAKHMKTEDVRIDPKLNEAIWSRG 59

Query: 69 IRSVPKRVRVRIARRRNDDEDAKE 92
          I   P+RVRVR++R+R + EDA  
Sbjct: 60 IEKPPRRVRVRVSRKREETEDAVL 83

Ribosomal protein L31e, which is present in archaea and eukaryotes, binds the 23S rRNA and is one of six protein components encircling the polypeptide exit tunnel. It is a component of the eukaryotic 60S (large) ribosomal subunit, and the archaeal 50S (large) ribosomal subunit. Length = 83

>gnl|CDD|140220 PTZ00193, PTZ00193, 60S ribosomal protein L31; Provisional

 Score = 78.5 bits (193), Expect = 2e-19
 Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 4   KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQ 63
           K  GRK + ++ E TI+L K L   TF K+AP AIK I+ F  + M TKD R+D  LN  
Sbjct: 75  KRTGRKPDNISMEATIHLSKLLKKKTFHKRAPIAIKRIKAFVGRLMKTKDNRIDASLNTY 134

Query: 64  IWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIE 117
           IW +G++ VP RVRV + R+    E  K + +  V ++ +P    + L TKV+E
Sbjct: 135 IWHKGVKGVPGRVRVLVERKSETLEGGKRKHFYTV-ISNVPVASFKNLTTKVVE 187

Length = 188

>gnl|CDD|225008 COG2097, RPL31A, Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]

 Score = 72.0 bits (177), Expect = 6e-18
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI 69
          + VV R +TI L  R       K+AP+A+K IRKF  + M  ++VR+D  LN++IW RGI
Sbjct: 4  KVVVERIYTIPLR-RAKKVPRTKRAPRAVKIIRKFVARHMKAEEVRIDPSLNEKIWERGI 62

Query: 70 RSVPKRVRVRIARRRNDDEDAKEELYSLV 98
             P ++RVR+++     ED   E+   V
Sbjct: 63 EKPPSKLRVRVSKF----EDGTVEVELAV 87

Length = 89

>gnl|CDD|234916 PRK01192, PRK01192, 50S ribosomal protein L31e; Reviewed

 Score = 54.9 bits (133), Expect = 3e-11
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 9  KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGT--KDVRVDVKLNKQIWS 66
           +EV  R +TI L + +      K+A +A+K +R+F  +        V++D  +N++IW 
Sbjct: 2  AKEVEERIYTIPL-RDVKKVPRTKRADRAVKLVREFLARHFKADEDKVKIDPSINEKIWE 60

Query: 67 RGIRSVPKRVRVRIARRRND 86
          RG    P +VRVR+A++  D
Sbjct: 61 RGREKPPSKVRVRVAKKGED 80

Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PTZ00193	188	60S ribosomal protein L31; Provisional	100.0
KOG0893	125	consensus 60S ribosomal protein L31 [Translation,	100.0
PF01198	83	Ribosomal_L31e: Ribosomal protein L31e; InterPro:	100.0
PRK01192	89	50S ribosomal protein L31e; Reviewed	100.0
COG2097	89	RPL31A Ribosomal protein L31E [Translation, riboso	99.97

>PTZ00193 60S ribosomal protein L31; Provisional

Probab=100.00  E-value=9.6e-54  Score=330.05  Aligned_cols=113  Identities=41%  Similarity=0.680  Sum_probs=110.2

Q ss_pred             ccccccccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEee
Q 033375            4 KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARR   83 (120)
Q Consensus         4 ~~~~~~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk   83 (120)
                      |+++++.+++|+||||||||++||++|++|||+||++||+||+|||||+||+|||+||++||++||+|||++|||+++|+
T Consensus        75 ~~~~~~~e~VTREyTINLHKriHgv~fKKRAPrAIKeIRkFA~K~MgT~DVRIDtrLNkaIWsrGIRnvP~RIRVRlsRK  154 (188)
T PTZ00193         75 KRTGRKPDNISMEATIHLSKLLKKKTFHKRAPIAIKRIKAFVGRLMKTKDNRIDASLNTYIWHKGVKGVPGRVRVLVERK  154 (188)
T ss_pred             HhhccCCCcceeEEEEeeeehhcCCCccccCHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHccCcCCCceEEEEEEee
Confidence            55788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCccc-ceEEEEEEecCCCCccCceeEEccc
Q 033375           84 RNDDEDAKEE-LYSLVTVAEIPPEGLRGLGTKVIED  118 (120)
Q Consensus        84 ~~eded~~~k-~y~~v~~v~v~~~~fk~l~t~~~~~  118 (120)
                      +|||||+++| |||||+||||+  +||||||++|+|
T Consensus       155 rNedEDs~~KklYTlVtyVpV~--sFKgLqT~~Vdq  188 (188)
T PTZ00193        155 SETLEGGKRKHFYTVISNVPVA--SFKNLTTKVVEQ  188 (188)
T ss_pred             cCccccCcccceEEEEEEEEcC--CccCceEEeccC
Confidence            9999999997 99999999999  999999999986

>KOG0893 consensus 60S ribosomal protein L31 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.8e-45  Score=267.19  Aligned_cols=113  Identities=52%  Similarity=0.859  Sum_probs=107.6

Q ss_pred             ccccccccccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEE
Q 033375            2 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA   81 (120)
Q Consensus         2 ~~~~~~~~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~s   81 (120)
                      .+|+.++|++++|+||||||||++|+++|+|+||+|+++|++|||++|||+||++|++||++||++||+|+|++||||++
T Consensus         9 ~~k~~s~ine~vtre~tinihk~~h~v~fkK~ap~alkeI~kFA~keMgt~dv~~Dt~lnkavwakgirnv~~~irvrls   88 (125)
T KOG0893|consen    9 KKKGHSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIWKFAMKEMGTPDVHVDTRLNKAVWEKGIRNVPYRIRVRLS   88 (125)
T ss_pred             cccCccchhhhhhhheecccccchhccchhhhhHHHHHHHHHHHHHHhCCccceecchhhHHHHHhcccCCcchhhcccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCcccceEEEEEEecCCCCccCceeEEc
Q 033375           82 RRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVI  116 (120)
Q Consensus        82 Rk~~eded~~~k~y~~v~~v~v~~~~fk~l~t~~~  116 (120)
                      |++|+|||++++|||+++|+||+  +|++++...+
T Consensus        89 rk~n~~e~~~~~l~t~~t~v~~~--~~~~~~~~~~  121 (125)
T KOG0893|consen   89 RKRNEDEDSPNKLYTQVTYVPVS--HGKNPQGKTV  121 (125)
T ss_pred             cccccccccchhheeeEEEEeec--ccccccceEE
Confidence            99999999999999999999999  9999655443

>PF01198 Ribosomal_L31e: Ribosomal protein L31e; InterPro: IPR000054 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2e-40  Score=229.09  Aligned_cols=83  Identities=65%  Similarity=1.072  Sum_probs=77.3

Q ss_pred             ccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEeeeCCCCC
Q 033375           10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDED   89 (120)
Q Consensus        10 ~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~eded   89 (120)
                      ++++|||||||||++ ++++|++|||+||++|++||+||||++||+|||+||++||++|+++||++|||+++|++++|||
T Consensus         1 ~~~v~re~TInL~k~-~~~~~~kRA~rAvk~Ir~f~~k~mkt~dV~iD~~lN~~IWsrGi~~pP~rIRVr~~r~~~~~e~   79 (83)
T PF01198_consen    1 KEVVTREYTINLRKV-HGVPFKKRAPRAVKEIRKFAQKHMKTEDVKIDPELNKAIWSRGIRKPPRRIRVRVSRKEEEDED   79 (83)
T ss_dssp             TSSEEEEEEEECHHH-CCSSGGGHHHHHHHHHHHHHHHHHTTSCEEE-HHHHHHHHTTTSSS--SEEEEEEEEETTTTEE
T ss_pred             CCceeEEEEEechhh-cCCCCcccCHHHHHHHHHHHHHHhCCCceEEchHHHHHHHhcccCCCCceEEEEEEEcccCCCC
Confidence            478999999999998 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc
Q 033375           90 AKEE   93 (120)
Q Consensus        90 ~~~k   93 (120)
                      +++|
T Consensus        80 ~~~~   83 (83)
T PF01198_consen   80 AKEK   83 (83)
T ss_dssp             EEEE
T ss_pred             CCCC
Confidence            8865

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial large subunit ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 87 to 128 amino-acid residues. This family consists of: Yeast L34 Archaeal L31 [] Plants L31 Mammalian L31 [] ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3G6E_X 3I56_X 1YIT_X 1NJI_Y 3CC4_X 1VQM_X 1KC8_Y 1VQ9_X 1VQN_X 1M1K_Y ....

>PRK01192 50S ribosomal protein L31e; Reviewed

Probab=100.00  E-value=6.5e-36  Score=209.12  Aligned_cols=74  Identities=34%  Similarity=0.620  Sum_probs=71.2

Q ss_pred             ccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCC--CeEeCchhhHHHHhCCCCCCCceeEEEEEeee
Q 033375           10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTK--DVRVDVKLNKQIWSRGIRSVPKRVRVRIARRR   84 (120)
Q Consensus        10 ~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~--dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~   84 (120)
                      .+++|++|||||||+ |+++|++|||+||++||+||+|||||+  ||+|||+||++||++|++|||+||||+++++.
T Consensus         3 ~~~~~r~yTInLrk~-~~~~~~kRA~rAik~Ir~f~~k~mkt~~~~V~iD~~lN~~IW~rGi~~~P~riRVr~~rk~   78 (89)
T PRK01192          3 KEVEERIYTIPLRDV-KKVPRTKRADRAVKLVREFLARHFKADEDKVKIDPSINEKIWERGREKPPSKVRVRVAKKG   78 (89)
T ss_pred             CcceEEEEEEeCeec-cCCCccccCHHHHHHHHHHHHHHhCCCCCcEEEChHHHHHHHHccCCCCCceEEEEEEEec
Confidence            468899999999998 999999999999999999999999998  99999999999999999999999999999974

>COG2097 RPL31A Ribosomal protein L31E [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.3e-31  Score=187.58  Aligned_cols=72  Identities=42%  Similarity=0.737  Sum_probs=69.9

Q ss_pred             cceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEee
Q 033375           11 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARR   83 (120)
Q Consensus        11 ~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk   83 (120)
                      ++.+++||||||+ ++++++++|||+|+++||+|++|||++++|+|||+||++||+||+++||++|||++++.
T Consensus         5 ~~~er~ytI~LR~-~~~v~r~kRA~rAVk~ir~fv~rHmk~e~V~id~~lNe~iW~rG~ekpP~klRVrv~k~   76 (89)
T COG2097           5 VVVERIYTIPLRR-AKKVPRTKRAPRAVKIIRKFVARHMKAEEVRIDPSLNEKIWERGIEKPPSKLRVRVSKF   76 (89)
T ss_pred             ccceEEEEEEchh-hccCCccccchHHHHHHHHHHHHHhCCceEEECHHHhHHHHHhhccCCCceEEEEEEEe
Confidence            6889999999995 69999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
2go5_6	123	Structure Of Signal Recognition Particle Receptor (		2e-44
3izr_g	123	Localization Of The Large Subunit Ribosomal Protein		6e-44
2zkr_x	125	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-28
2ww9_M	113	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		8e-24
1s1i_W	112	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-24
3jyw_W	79	Structure Of The 60s Proteins For Eukaryotic Riboso		5e-20
4a17_W	111	T.Thermophila 60s Ribosomal Subunit In Complex With		9e-20
3zf7_h	188	High-resolution Cryo-electron Microscopy Structure		4e-14
3j21_a	95	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-04

>pdb|2GO5|6 Chain 6, Structure Of Signal Recognition Particle Receptor (Sr) In Complex With Signal Recognition Particle (Srp) And Ribosome Nascent Chain Complex Length = 123

Iteration: 1
 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 98/113 (86%)
Query: 8   RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSR 67
           RK+EVVTRE+T+NLHKRLHGCTFKKKAP AIKEIRKFA+KAMGT DVR+DVKLNK IWS 
Sbjct: 11  RKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSS 70
Query: 68  GIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 120
           GIRSVP+          ND+EDAKEELYSLVTVAE+P EGL+GLGTKV+EDED
Sbjct: 71  GIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED 123

>pdb|3IZR|GG Chain g, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 123

Iteration: 1
 Score =  172 bits (435), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/123 (73%), Positives = 103/123 (83%), Gaps = 3/123 (2%)
Query: 1   MVEKTKG---RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD 57
           M EK +G   RK+EVVTRE+TINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGT D+R+D
Sbjct: 1   MSEKKRGAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDIRID 60
Query: 58  VKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIE 117
           VKLNK IW+ GIRSVP+          ND+EDAKEELYSLVTVAEIP EGL+GLGTKV+E
Sbjct: 61  VKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 120
Query: 118 DED 120
           DE+
Sbjct: 121 DEE 123

>pdb|2ZKR|XX Chain x, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 125

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Query: 10  EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI 69
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GI
Sbjct: 18  NEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGI 77
Query: 70  RSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGT 113
           R+VP           N+DED+  +LY+LVT   +P    + L T
Sbjct: 78  RNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQT 119

>pdb|2WW9|M Chain M, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 113

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 11  EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIR 70
           +VVTRE+TINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ IW RG++
Sbjct: 6   DVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVK 65
Query: 71  SVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
            V            N++EDAK  L+S V    +     +GL T V+E++
Sbjct: 66  GVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVA--SAKGLQTVVVEED 112

>pdb|1S1I|W Chain W, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 112

Iteration: 1
 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 11  EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIR 70
           +VVTRE+TINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ IW RG++
Sbjct: 5   DVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVK 64
Query: 71  SVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
            V            N++EDAK  L+S V    +     +GL T V+E++
Sbjct: 65  GVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVA--SAKGLQTVVVEED 111

>pdb|3JYW|W Chain W, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 79

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 14 TREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVP 73
          TRE+TINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ IW RG++ V 
Sbjct: 1  TREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVE 60
Query: 74 KXXXXXXXXXXNDDEDAK 91
                     N++EDAK
Sbjct: 61 YRLRLRISRKRNEEEDAK 78

>pdb|4A17|W Chain W, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 111

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 9   KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRG 68
           K+E  + + T+NLHK+ H  +FKKKAP+AI+EI   A+K MGT DVR+D +LNK IWS G
Sbjct: 3   KQEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNG 62
Query: 69  IRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGT 113
           IR++P+          N++E A+ + Y+LV   ++  +   GL T
Sbjct: 63  IRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQHLQV--DSYHGLLT 105

>pdb|3ZF7|HH Chain h, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 188

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 4   KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQ 63
           K  GRK + +  E +I+L K L   TF K+AP AIK IR F  K M TKD R+D  LN  
Sbjct: 75  KRTGRKPDNIVMEASIHLSKLLKKRTFHKRAPIAIKRIRSFVGKLMKTKDNRIDASLNTF 134
Query: 64  IWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
           IW +G++ VP              E  K + +  V ++ IP    + L TKVIE 
Sbjct: 135 IWHKGVKGVPGRVRVRVERKSETMEGGKRKHFYTV-ISHIPVPSFKNLTTKVIEQ 188

>pdb|3J21|AA Chain a, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 95

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI 69
          EEV+   FT+ + K        K+AP+A+K +R+F  +    ++V +D K+N++IW RGI
Sbjct: 7  EEVI---FTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGI 63
Query: 70 RSVP 73
             P
Sbjct: 64 EKPP 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	3e-46
4a17_W	111	RPL31, 60S ribosomal protein L31; eukaryotic ribos	4e-45
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	9e-45
2zkr_x	125	60S ribosomal protein L31; protein-RNA complex, 60	7e-42
1vq8_X	92	50S ribosomal protein L31E; ribosome 50S, protein-	2e-30

>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W Length = 111

 Score =  141 bits (357), Expect = 4e-45
 Identities = 53/111 (47%), Positives = 79/111 (71%), Gaps = 2/111 (1%)

Query: 9   KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRG 68
           K+E  + + T+NLHK+ H  +FKKKAP+AI+EI   A+K MGT DVR+D +LNK IWS G
Sbjct: 3   KQEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNG 62

Query: 69  IRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
           IR++P+RVRVR+ +R+N++E A+ + Y+LV    +  +   GL T+  + E
Sbjct: 63  IRNIPRRVRVRLCKRKNEEEGAQSQFYTLVQH--LQVDSYHGLLTEKTKAE 111

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297

 Score =  140 bits (354), Expect = 9e-45
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 2/110 (1%)

Query: 10  EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI 69
           ++  +  ++             K      K +    +    T   R+ V+   +     I
Sbjct: 5   KDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQI 64

Query: 70  RSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE 119
            S      V +A   + +       + L             L  +    +
Sbjct: 65  ISSTITGDVVLAAAYSHELPRYGITHGLTNW--AAAYATGLLIARRTLQK 112

>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 125

 Score =  133 bits (336), Expect = 7e-42
 Identities = 67/118 (56%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 3   EKTKGRK--EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60
           EK KGR    EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +L
Sbjct: 9   EKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL 68

Query: 61  NKQIWSRGIRSVPKRVRVRIARRRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIED 118
           NK +W++GIR+VP R+RVR++R+RN+DED+  +LY+LVT   +P    + L T  +++
Sbjct: 69  NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124

>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ... Length = 92

 Score =  103 bits (258), Expect = 2e-30
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKD--VRVDVKLNKQIWSR 67
           +   R  TI L          K+A KA+  IR+   K     +  VR+D  +N+  W+R
Sbjct: 4  SDFEERVVTIPLRD-ARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWAR 62

Query: 68 GIRSVPKRVRVRIARRRNDDEDAKE 92
          G  + P ++RVR AR   + E   E
Sbjct: 63 GRANTPSKIRVRAARFEEEGEAIVE 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
3u5e_d	113	L34, YL28, 60S ribosomal protein L31-A; translatio	100.0
4a17_W	111	RPL31, 60S ribosomal protein L31; eukaryotic ribos	100.0
3iz5_g	123	60S ribosomal protein L31 (L31E); eukaryotic ribos	100.0
2zkr_x	125	60S ribosomal protein L31; protein-RNA complex, 60	100.0
3j21_a	95	50S ribosomal protein L31E; archaea, archaeal, KIN	100.0
1vq8_X	92	50S ribosomal protein L31E; ribosome 50S, protein-	100.0

>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W

Probab=100.00  E-value=1.5e-59  Score=339.51  Aligned_cols=112  Identities=53%  Similarity=0.894  Sum_probs=107.8

Q ss_pred             ccccccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEeeeC
Q 033375            6 KGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRN   85 (120)
Q Consensus         6 ~~~~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~   85 (120)
                      ++++++++||||||||||++||++|+||||+|+++||+||+|||||+||+||++||++||++||+|||++|||++||++|
T Consensus         1 ~sa~~evvtreyTInlhK~ihgv~fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~n   80 (113)
T 3u5e_d            1 MAGLKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRN   80 (113)
T ss_dssp             ---CCCCEEEEEEEEHHHHHTTCCTTTHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHHHTTCTTCCCSEEEEEEEEEEC
T ss_pred             CCcccCceeeEEEEeCcceeccCCCcccCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHhccccCCCceEEEEEEEecC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEEEEecCCCCccCceeEEcccC
Q 033375           86 DDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE  119 (120)
Q Consensus        86 eded~~~k~y~~v~~v~v~~~~fk~l~t~~~~~~  119 (120)
                      ||||+++||||||+||||+  +||||||.+|+++
T Consensus        81 ededs~~klytlvt~v~v~--tfk~L~t~~v~~~  112 (113)
T 3u5e_d           81 EEEDAKNPLFSYVEPVLVA--SAKGLQTVVVEED  112 (113)
T ss_dssp             CSSCCSSSEEEEEEECCCS--CCSSCCCEEECCC
T ss_pred             CCCCCccccEEEEEEEEcC--CccCceEEEeccC
Confidence            9999999999999999999  9999999999976

>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W

Probab=100.00  E-value=1.1e-58  Score=334.08  Aligned_cols=108  Identities=48%  Similarity=0.806  Sum_probs=106.3

Q ss_pred             ccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEeeeCCCCC
Q 033375           10 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDED   89 (120)
Q Consensus        10 ~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~eded   89 (120)
                      .+++||||||||||++||++|+||||+|+++||+||+|||||+||+|||+||++||++||+|||+||||+++|++|||||
T Consensus         4 ~~vvtreyTInlhK~ihgv~fkKrAprAlkeIrkFa~K~Mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~neded   83 (111)
T 4a17_W            4 QEEKSIDTTVNLHKQCHKISFKKKAPRAIREIVAIAKKTMGTDDVRIDTELNKFIWSNGIRNIPRRVRVRLCKRKNEEEG   83 (111)
T ss_dssp             CCCCEEEEEEEHHHHTTTCCGGGHHHHHHHHHHHHHHHHHCCSCEEECHHHHHHHHTTCSSSCCSEEEEEEEEEECCCSS
T ss_pred             CcceEEEEEEECeeeeecCCccccCHHHHHHHHHHHHHHcCCCceEECcHHHHHHHhccccCCCcEEEEEEEEecCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceEEEEEEecCCCCccCceeEEcccC
Q 033375           90 AKEELYSLVTVAEIPPEGLRGLGTKVIEDE  119 (120)
Q Consensus        90 ~~~k~y~~v~~v~v~~~~fk~l~t~~~~~~  119 (120)
                      +++|||+||+||||+  +||||||.++++|
T Consensus        84 s~~klytlvt~v~v~--tfk~L~t~~v~~~  111 (111)
T 4a17_W           84 AQSQFYTLVQHLQVD--SYHGLLTEKTKAE  111 (111)
T ss_dssp             CSSSEEEEEEEECCS--CGGGCCCEECCCC
T ss_pred             CCCCcEEEEEEEEcC--CcccceEEEeccC
Confidence            999999999999999  9999999999875

>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.1e-57  Score=334.65  Aligned_cols=113  Identities=54%  Similarity=0.952  Sum_probs=79.8

Q ss_pred             cccccccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEeee
Q 033375            5 TKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRR   84 (120)
Q Consensus         5 ~~~~~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~   84 (120)
                      +.+++++++||||||||||++||++|++|||+||++||+||+|||||+||+|||+||++||++||+|||++|||+++|++
T Consensus        13 ~~s~~~evvtreyTInL~K~ihgv~fkKRAprAik~IrkFa~K~Mgt~dVrID~~LNk~IWskGirnvP~rIRVrlsRk~   92 (125)
T 2zkr_x           13 GRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKR   92 (125)
T ss_dssp             ---------CEEEEEECHHHHSSBSSSBHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHTTCSSCCCSEEEEEEEEET
T ss_pred             CCcccccceeeEEEeccccccccCCCCccCHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHhccCCCCCceEEEEEEEec
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEEEEecCCCCccCceeEEcccC
Q 033375           85 NDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDE  119 (120)
Q Consensus        85 ~eded~~~k~y~~v~~v~v~~~~fk~l~t~~~~~~  119 (120)
                      |||||+++||||||+||||+  +||||||++|+++
T Consensus        93 nededs~~klytlv~~v~v~--~fk~L~t~~v~~~  125 (125)
T 2zkr_x           93 NEDEDSPNKLYTLVTYVPVT--TFKNLQTVNVDEN  125 (125)
T ss_dssp             TTTEEEEEC--------------------------
T ss_pred             cCCCCCccccEEEEEEEEcC--cccCceEEEeecC
Confidence            99999999999999999999  9999999999874

>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-43  Score=247.53  Aligned_cols=83  Identities=28%  Similarity=0.476  Sum_probs=80.0

Q ss_pred             cccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCCeEeCchhhHHHHhCCCCCCCceeEEEEEeeeCCCC
Q 033375            9 KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDE   88 (120)
Q Consensus         9 ~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~ede   88 (120)
                      +++++||||||||||++||++|+||||+|+++||+||+|||||+||+|||+||++||++||+|||++|||+++|++||||
T Consensus         3 ~~e~vtreyTInlhK~~hgv~fkKrAprAlkeIrkFa~K~mgt~dV~ID~~LNk~vWakGirnvP~rIrVrlsRk~ne~e   82 (95)
T 3j21_a            3 IKAGEEVIFTVPIKKIKKIVPRWKRAPRAVKFVREFVARHAKAQEVIIDPKVNEKIWERGIEKPPSKLRVKVKVEEEKRE   82 (95)
T ss_dssp             -CCSSCEEEEEECTTHHHHBCSGGGHHHHHHHHHHHHHHHHTCSSCEECHHHHHHHHTTCSSCCCSEEEEEEEEECCCSS
T ss_pred             CCCCceEEEEEEChheecCCCccccCHHHHHHHHHHHHHhcCCCcEEEChHHHHHHHhccccCCCCeEEEEEEEeccCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCc
Q 033375           89 DAK   91 (120)
Q Consensus        89 d~~   91 (120)
                      ++.
T Consensus        83 ~~~   85 (95)
T 3j21_a           83 GEE   85 (95)
T ss_dssp             SCS
T ss_pred             CCc
Confidence            765

>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...

Probab=100.00  E-value=3.3e-40  Score=231.08  Aligned_cols=77  Identities=31%  Similarity=0.478  Sum_probs=69.9

Q ss_pred             cccceeeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCC--CeEeCchhhHHHHhCCCCCCCceeEEEEEeeeCC
Q 033375            9 KEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTK--DVRVDVKLNKQIWSRGIRSVPKRVRVRIARRRND   86 (120)
Q Consensus         9 ~~~~vtreyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~--dV~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~e   86 (120)
                      +.+++|||||||||| +||++|+||||+|+++||+||+|||||+  ||+|||+||++||++||+|||++|||+++|+++|
T Consensus         3 ~~~~vtreyTInl~k-i~~~~~kkRAprAik~Irkfa~k~m~t~~~dVriD~~LNk~iW~rGir~vP~rIRVr~sR~~ed   81 (92)
T 1vq8_X            3 ASDFEERVVTIPLRD-ARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEE   81 (92)
T ss_dssp             -----CEEEEEECGG-GGGSCGGGHHHHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHTTTCSSCCCSEEEEEEEEETTT
T ss_pred             cccceeEEEEEEhHH-hcCCCccccCHHHHHHHHHHHHHHhCCCcccEEECcHHHHHHHhcccCCCCceEEEEEEEEccC
Confidence            468999999999999 8999999999999999999999999999  9999999999999999999999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	120
d1vqox1	82	d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon	2e-25

>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L31e
superfamily: Ribosomal protein L31e
family: Ribosomal protein L31e
domain: Ribosomal protein L31e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 89.0 bits (221), Expect = 2e-25
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 15 REFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKD--VRVDVKLNKQIWSRGIRSV 72
          R  TI L +        K+A KA+  IR+   K     +  VR+D  +N+  W+RG  + 
Sbjct: 2  RVVTIPL-RDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANT 60

Query: 73 PKRVRVRIARRRNDDEDAKE 92
          P ++RVR AR   + E   E
Sbjct: 61 PSKIRVRAARFEEEGEAIVE 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d1vqox1	82	Ribosomal protein L31e {Archaeon Haloarcula marism	100.0

>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L31e
superfamily: Ribosomal protein L31e
family: Ribosomal protein L31e
domain: Ribosomal protein L31e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.2e-36  Score=207.66  Aligned_cols=76  Identities=33%  Similarity=0.506  Sum_probs=71.9

Q ss_pred             eeEEEEecCccccCCCCCcchHHHHHHHHHHHHHHcCCCC--eEeCchhhHHHHhCCCCCCCceeEEEEEeeeCCCCCC
Q 033375           14 TREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKD--VRVDVKLNKQIWSRGIRSVPKRVRVRIARRRNDDEDA   90 (120)
Q Consensus        14 treyTInL~K~~~~~~~kkRAp~Aik~Irkfa~K~m~t~d--V~ID~~LNk~IWsrGi~~~P~rIRVr~sRk~~eded~   90 (120)
                      +|+|||||++ +++++|++|||+||++||+||+|||||+|  |+|||+||++|||+|++|||++|||+++|+++|||+.
T Consensus         1 Er~yTI~Lr~-~~~~~~~kRA~rAik~Ir~f~~khmkt~d~~V~ID~~lN~~IWsrGi~~pP~rIRVr~~r~~ee~e~~   78 (82)
T d1vqox1           1 ERVVTIPLRD-ARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAI   78 (82)
T ss_dssp             CEEEEEECGG-GGGSCGGGHHHHHHHHHHHHHHHHTTCCGGGEEECHHHHHHHTTTCTTCCCSEEEEEEEEETTTTEEE
T ss_pred             CeEEEEEcHH-hhCCCcccccHHHHHHHHHHHHHHhCCCCCeEEECcHHHHHHHhccCcCCCCeEEEEEEEeccCCcee
Confidence            5899999988 68999999999999999999999999987  9999999999999999999999999999998887653