BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033376
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 37 SVVDIVTPKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFF 96
SV I++ FFNG+ A +SC GK FY+ +AF+ A ++S FG TG+ + RE+AAFF
Sbjct: 1 SVGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFF 60
Query: 97 AHVTHETGHM 106
A+V HETG +
Sbjct: 61 ANVMHETGGL 70
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQ-----GPYDAPPATNDVSVVDIVTPK--FFNGILNQADA 56
CCS+WG+CGT+ ++CG G Q GP P + V + P+ F +L++ D
Sbjct: 18 CCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSIVPRDLFERLLLHRNDG 77
Query: 57 SCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHET 103
+C + FY+ AFL A +F FG TG E RE+AAF +HET
Sbjct: 78 ACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHET 124
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 38 VVDIVTPKFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFF 96
V ++ F+ +L ++ D +C GK FYS +AF+ A SF+ FG TG RE+AAF
Sbjct: 3 VGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFL 62
Query: 97 AHVTHET 103
A +HET
Sbjct: 63 AQTSHET 69
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 38 VVDIVTPKFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFF 96
V ++ F+ +L ++ D +C GK FYS +AF+ A SF FG TG RE+AAF
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 97 AHVTHET 103
A +HET
Sbjct: 62 AQTSHET 68
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 36 VSVVDIVT-PKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAA 94
+SV I++ +F +L++ D +C K FY+ AF+ A +F FG TG+ + R++AA
Sbjct: 1 MSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAA 60
Query: 95 FFAHVTHET 103
F A +HET
Sbjct: 61 FLAQTSHET 69
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 38 VVDIVTPKFFNGIL-NQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFF 96
+ I++ F+ +L ++ + +C K FY+ AF+ A SF FG TG+ + REIAAF
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 97 AHVTHET 103
+HET
Sbjct: 62 GQTSHET 68
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 63 FYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHM 106
FY+ DAL ++ F +TG++E RE AAF A+V+HETG +
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGGL 122
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 63 FYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHM 106
FY+ DAL ++ F +TG++E RE AAF A+V+H+TG +
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGGL 122
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 41 IVTPKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVT 100
I +F+ + + D C F++ AF+ A SF FG TG +EIAAFF +
Sbjct: 6 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 65
Query: 101 HET 103
HET
Sbjct: 66 HET 68
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 41 IVTPKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVT 100
I +F+ + + D C F++ AF+ A SF FG TG +EIAAFF +
Sbjct: 9 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 68
Query: 101 HET 103
HET
Sbjct: 69 HET 71
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 41 IVTPKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVT 100
I +F+ + + D C F++ AF+ A SF FG TG +EIAAFF +
Sbjct: 8 ISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTS 67
Query: 101 HET 103
HET
Sbjct: 68 HET 70
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 SVVDIVT-PKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAF 95
SV IV+ +F +L++ D +C K FY+ AF+ A +FS FG TG+ + RE+AAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAF 60
Query: 96 FAHVTHET 103
A +HET
Sbjct: 61 LAQTSHET 68
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 37 SVVDIVT-PKFFNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAF 95
SV IV+ +F +L++ D +C K FY+ AF+ A +F FG TG+ + RE+AAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60
Query: 96 FAHVTHET 103
A +HET
Sbjct: 61 LAQTSHET 68
>pdb|1WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|1WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|7WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|7WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2CWG|A Chain A, Crystallographic Refinement And Structure Analysis Of
The Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2CWG|B Chain B, Crystallographic Refinement And Structure Analysis Of
The Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2UVO|A Chain A, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|B Chain B, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|E Chain E, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|F Chain F, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2X3T|A Chain A, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|B Chain B, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|C Chain C, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|D Chain D, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|4AML|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1
In Complex With Glycosylurethan
pdb|4AML|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1
In Complex With Glycosylurethan
Length = 171
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 3 QCCSQWGYCGTSDEYCGAGSQQGPYDA 29
QCCSQ+GYCG EYCGAG Q GP A
Sbjct: 59 QCCSQYGYCGFGAEYCGAGCQGGPCRA 85
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQWG+CG E+CG G Q G
Sbjct: 103 CCSQWGFCGLGSEFCGGGCQSG 124
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCS+WG CG YCGAG Q G D
Sbjct: 146 CCSKWGSCGIGPGYCGAGCQSGGCDG 171
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQ+GYCG +YCG G Q G
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNG 38
>pdb|1ULK|A Chain A, Crystal Structure Of Pokeweed Lectin-C
pdb|1ULK|B Chain B, Crystal Structure Of Pokeweed Lectin-C
Length = 126
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQWGYCGT++EYCG G Q
Sbjct: 18 CCSQWGYCGTTEEYCGKGCQ 37
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQ+G+CG SD +CG G Q
Sbjct: 59 CCSQYGWCGNSDGHCGEGCQ 78
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCSQ+G+CG +D++C G Q
Sbjct: 100 CCSQYGWCGLTDDHCEDGCQ 119
>pdb|1ULN|A Chain A, Crystal Structure Of Pokeweed Lectin-D1
Length = 84
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 3 QCCSQWGYCGTSDEYCGAGSQ 23
+CCSQWGYCGT+D YCG G Q
Sbjct: 17 KCCSQWGYCGTTDNYCGQGCQ 37
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 4 CCSQWGYCGTSDEYCGAGSQ 23
CCS++G+CG SD++C G Q
Sbjct: 59 CCSKYGWCGYSDDHCEDGCQ 78
>pdb|1ULM|A Chain A, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1ULM|B Chain B, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1UHA|A Chain A, Crystal Structure Of Pokeweed Lectin-D2
Length = 82
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 3 QCCSQWGYCGTSDEYCGAGSQ 23
+CCSQWGYCGT+D YCG G Q
Sbjct: 17 KCCSQWGYCGTTDNYCGQGCQ 37
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 61 KNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHMA 107
+FY+ S AL ++ F TG++ +E AAF A+V HETG +
Sbjct: 16 NSFYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGGLV 62
>pdb|1WGT|A Chain A, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1WGT|B Chain B, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1K7T|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7T|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7U|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7U|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7V|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
pdb|1K7V|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
Length = 186
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQWGYCG E+CG G Q G
Sbjct: 103 CCSQWGYCGLGSEFCGEGCQNG 124
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCSQ+G+CG EYCGAG Q GP A
Sbjct: 60 CCSQYGHCGFGAEYCGAGCQGGPCRA 85
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCS+WG CG YCGAG Q G D
Sbjct: 146 CCSKWGSCGIGPGYCGAGCQSGGCDG 171
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQ+GYCG +YCG G Q G
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNG 38
>pdb|2X52|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
pdb|2X52|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3 In
Complex With A Synthetic Divalent Carbohydrate Ligand
Length = 171
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQWGYCG E+CG G Q G
Sbjct: 103 CCSQWGYCGLGSEFCGEGCQNG 124
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCSQ+G+CG EYCGAG Q GP A
Sbjct: 60 CCSQYGHCGFGAEYCGAGCQGGPCRA 85
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCS+WG CG YCGAG Q G D
Sbjct: 146 CCSKWGSCGIGPGYCGAGCQSGGCDG 171
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQ+GYCG +YCG G Q G
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNG 38
>pdb|2WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
Length = 171
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCSQ+G+CG EYCGAG Q GP A
Sbjct: 60 CCSQYGHCGFGAEYCGAGCQGGPCRA 85
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQWG+CG E+CG G Q G
Sbjct: 103 CCSQWGFCGLGSEFCGGGCQSG 124
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQGPYDA 29
CCS+WG CG YCGAG Q G DA
Sbjct: 146 CCSKWGSCGIGPGYCGAGCQSGGCDA 171
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQG 25
CCSQ+GYCG +YCG G Q G
Sbjct: 17 CCSQYGYCGMGGDYCGKGCQNG 38
>pdb|1ZVF|A Chain A, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
pdb|1ZVF|B Chain B, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
Length = 176
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 44 PKFFNGILNQADASCVGKNF-YSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHE 102
PKF + I+N+ D+ + N +S F D +G + R G E D +R + V HE
Sbjct: 77 PKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVVEQDRPGGENDKIRWYCSHCRQVVHE 136
Query: 103 T 103
+
Sbjct: 137 S 137
>pdb|1ZUV|A Chain A, 24 Nmr Structures Of Acamp2-Like Peptide With
Phenylalanine 18 Mutated To Tryptophan
Length = 30
Score = 33.9 bits (76), Expect = 0.027, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 4 CCSQWGYCGTSDEYCG 19
CCSQWGYCG +YCG
Sbjct: 14 CCSQWGYCGKGPKYCG 29
>pdb|1T0W|A Chain A, 25 Nmr Structures Of Truncated Hevein Of 32 Aa
(Hevein-32) Complex With N,N,N-Triacetylglucosamina
Length = 33
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 4 CCSQWGYCGTSDEYC 18
CCSQWG+CG++DEYC
Sbjct: 17 CCSQWGWCGSTDEYC 31
>pdb|1Q9B|A Chain A, Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5
Angstroms Resolution
pdb|1HEV|A Chain A, Hevein: The Nmr Assignment And An Assessment Of
Solution- State Folding For The Agglutinin-Toxin Motif
Length = 43
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 4 CCSQWGYCGTSDEYC 18
CCSQWG+CG++DEYC
Sbjct: 17 CCSQWGWCGSTDEYC 31
>pdb|1WKX|A Chain A, Crystal Structure Of A Hev B 6.02 Isoallergen
Length = 43
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 15/15 (100%)
Query: 4 CCSQWGYCGTSDEYC 18
CCSQWG+CG++DEYC
Sbjct: 17 CCSQWGWCGSTDEYC 31
>pdb|2LB7|A Chain A, Hevein-Type Antifungal Peptide With A Unique 10-Cysteine
Motif
Length = 44
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQ 24
CC ++G+CG+ D YCGAGS Q
Sbjct: 18 CCGKYGFCGSGDAYCGAGSCQ 38
>pdb|1MMC|A Chain A, 1h Nmr Study Of The Solution Structure Of Ac-Amp2
Length = 30
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 4 CCSQWGYCGTSDEYCG 19
CCSQ+GYCG +YCG
Sbjct: 14 CCSQFGYCGKGPKYCG 29
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 47 FNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGHM 106
F G+L AD V K +Y S+F +A+ +F G +RE+ + ET ++
Sbjct: 67 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLG-----LREVERKIGAIPPETIYV 121
Query: 107 ADKH 110
H
Sbjct: 122 HPMH 125
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 47 FNGILNQADASCVGKNFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAF 95
F G+L AD V K +Y S+F +A+ +F G E R+I A
Sbjct: 68 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLRE-VERKIGAI 115
>pdb|1ZWU|A Chain A, 30 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Beta-(2- Naphthyl)-Alanine Residue
Length = 30
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 4 CCSQWGYCGTSDEYCG 19
CCSQ GYCG +YCG
Sbjct: 14 CCSQXGYCGKGPKYCG 29
>pdb|1P9Z|A Chain A, The Solution Structure Of Antifungal Peptide Distinct
With A Five-Disulfide Motif From Eucommia Ulmoides
Oliver
pdb|1P9G|A Chain A, Crystal Structure Of A Novel Antifungal Protein Distinct
With Five Disulfide Bridges From Ecommia Ulmoides
Oliver At Atomic Resolution
Length = 41
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 4 CCSQWGYCGTSDEYCGAGSQQ 24
CCS +GYCG+ YCGAG+ +
Sbjct: 16 CCSIYGYCGSGAAYCGAGNCR 36
>pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi
pdb|1EHH|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
pdb|1EHH|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
Length = 89
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 3 QCCSQWGYCGTSDEYCG 19
+CCS WG+CG S+ YCG
Sbjct: 16 RCCSIWGWCGDSEPYCG 32
>pdb|2KUS|A Chain A, Spatial Structure Of Antimicrobial Peptide Sm-Amp-1.1a
Length = 35
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 4 CCSQWGYCGTSDEYC 18
CCSQ+GYCG+ +YC
Sbjct: 19 CCSQYGYCGSGPKYC 33
>pdb|1EIS|A Chain A, Uda Uncomplexed Form. Crystal Structure Of Urtica Dioica
Agglutinin, A Superantigen Presented By Mhc Molecules
Of Class I And Class Ii
Length = 87
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 3 QCCSQWGYCGTSDEYCG 19
+CCS WG+CG S+ YCG
Sbjct: 17 RCCSIWGWCGDSEPYCG 33
>pdb|1IQB|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
pdb|1IQB|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
Length = 89
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 1 MWQCCSQWGYCGTSDEYCG 19
+W CCS WG+CG S+ YCG
Sbjct: 15 LW-CCSIWGWCGDSEPYCG 32
>pdb|1EN2|A Chain A, Uda Tetrasaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
pdb|1ENM|A Chain A, Uda Trisaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
Length = 91
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 4 CCSQWGYCGTSDEYCG 19
CCS WG+CG S+ YCG
Sbjct: 20 CCSIWGWCGDSEPYCG 35
>pdb|3CA8|A Chain A, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
pdb|3CA8|B Chain B, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
Length = 266
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 84 AEEDTMREIAAFFAHVTHETGHMADKHDNCG 114
AE + +IA F H+ HE + D+ NCG
Sbjct: 97 AEATILADIAHQFWHIPHEKIWIEDQSTNCG 127
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 85 EEDTMREIAAFFAHVTHETG 104
EEDT RE+ F +VTH
Sbjct: 4 EEDTFRELRIFLRNVTHRLA 23
>pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
pdb|4F4E|B Chain B, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei Covalently Bound To
Pyridoxal Phosphate
Length = 420
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 48 NGILNQADASCVGKNFYSRSAFLDAL-GSFSQFGRTGAEEDTMREIAAFFA 97
NG++ + A+ + ++F +F++A G FS G T A+ D +RE +A
Sbjct: 346 NGLVERLKAAGIERDF----SFINAQRGMFSYSGLTSAQVDRLREEFGIYA 392
>pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase
From Burkholderia Pseudomallei
Length = 420
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 48 NGILNQADASCVGKNFYSRSAFLDAL-GSFSQFGRTGAEEDTMREIAAFFA 97
NG++ + A+ + ++F +F++A G FS G T A+ D +RE +A
Sbjct: 346 NGLVERLKAAGIERDF----SFINAQRGMFSYSGLTSAQVDRLREEFGIYA 392
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 206
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 62 NFYSRSAFLDALGSFSQFGRTGAEEDTMREIAAFFAHVTHETGH 105
N+ + LD+ GSF + R ++ +E F V HE H
Sbjct: 153 NYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALH 196
>pdb|1ZNT|A Chain A, 18 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Fluoroaromatic Residue (Acamp2f18pffY20PFF)
COMPLEX WITH N,N,N- Triacetylchitotriose
Length = 31
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 4 CCSQWGYCGTSDEYCG 19
CCSQ G CG +YCG
Sbjct: 14 CCSQXGXCGKGPKYCG 29
>pdb|4B53|A Chain A, Crystal Structure Of The Isolated Igg4 Ch3 Domain
pdb|4B53|B Chain B, Crystal Structure Of The Isolated Igg4 Ch3 Domain
Length = 106
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 27 YDAPPA-----TNDVSVVDIVTPKFFNGILNQADASCVGKNFYSRSA-FLDALGSFSQFG 80
Y PP+ N VS+ +V + + I + +++ +N Y + LD+ GSF +
Sbjct: 8 YTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS 67
Query: 81 RTGAEEDTMREIAAFFAHVTHETGH 105
R ++ +E F V HE H
Sbjct: 68 RLTVDKSRWQEGNVFSCSVMHEALH 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,704
Number of Sequences: 62578
Number of extensions: 153795
Number of successful extensions: 327
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 67
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)