BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033379
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 18 ATSVITPKSNGENEQWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDH 77
AT TPK+ G WC+ DD+L +++AC G DC IQ C+ PNT + H
Sbjct: 1 ATPTPTPKAAGS---WCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAH 57
Query: 78 ASYAFNSYFQKFKNKGGSCYFKGAAVITELDPSHNSCRY 116
A+Y N Y+Q +C F A +T +PS+ +C +
Sbjct: 58 AAYVMNLYYQHAGRNSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 393
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 YAFNSYFQKFKNKGGSCYFKGAAVITELDPS 110
Y+ NS + KFKN S Y+ ++ L+PS
Sbjct: 172 YSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS 202
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|B Chain B, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|C Chain C, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
Length = 285
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 27 NGENEQWCIADEQTPDDELQAAM 49
+G +E WC+ D + DDEL A +
Sbjct: 97 DGVDETWCLFDGELIDDELYALL 119
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 YYPNTTRDHASYAFNSYFQKFKNKGG 94
YYPN T+D A +F++F GG
Sbjct: 135 YYPNITKDEA--GLQKFFRQFSYPGG 158
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 YYPNTTRDHASYAFNSYFQKFKNKGG 94
YYPN T+D A +F++F GG
Sbjct: 135 YYPNITKDEA--GLQKFFRQFSYPGG 158
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 YYPNTTRDHASYAFNSYFQKFKNKGG 94
YYPN T+D A +F++F GG
Sbjct: 135 YYPNITKDEA--GLQKFFRQFSYPGG 158
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 YYPNTTRDHASYAFNSYFQKFKNKGG 94
YYPN T+D A +F++F GG
Sbjct: 135 YYPNITKDEA--GLQKFFRQFSYPGG 158
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 69 YYPNTTRDHASYAFNSYFQKFKNKGG 94
YYPN T+D A +F++F GG
Sbjct: 135 YYPNITKDEA--GLQKFFRQFSYPGG 158
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 9 LLRIMLALLATSVITPKSNGE-NEQWCIADEQTPDDELQAAMDWACGNGAD---CSKIQM 64
LLR+ML + T S G+ E + + P + QA + C G + K++
Sbjct: 179 LLRMMLGIFQ---FTSTSTGQLYEMFSSVMKHLPGPQQQA---FQCLQGLEDFIAKKVEH 232
Query: 65 NQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVIT 105
NQ PN+ RD ++ KN Y K + T
Sbjct: 233 NQRTLDPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTT 273
>pdb|3VYX|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase (dhx9)
Length = 114
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 41 PDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKG 100
+ E+QA ++ ++ +N + N T ++A N YFQK K +G Y
Sbjct: 3 EEQEVQATLE--------SEEVDLN-AGLHGNWTLENAKARLNQYFQKEKIQGEYKY--- 50
Query: 101 AAVITELDPSHN 112
T++ P HN
Sbjct: 51 ----TQVGPDHN 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,719,043
Number of Sequences: 62578
Number of extensions: 141081
Number of successful extensions: 254
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 11
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)