Query 033379
Match_columns 120
No_of_seqs 109 out of 716
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 13:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 1.6E-35 3.4E-40 202.4 8.9 85 32-116 1-85 (85)
2 PF07983 X8: X8 domain; Inter 99.9 1.3E-27 2.7E-32 161.4 6.6 72 32-103 1-78 (78)
3 PHA02673 ORF109 EEV glycoprote 40.4 42 0.00092 25.7 3.5 14 57-70 75-88 (161)
4 PF07803 GSG-1: GSG1-like prot 38.7 14 0.00031 27.0 0.7 30 12-41 10-39 (118)
5 PF10913 DUF2706: Protein of u 33.8 56 0.0012 20.9 2.8 35 11-45 6-43 (60)
6 PF13605 DUF4141: Domain of un 30.3 54 0.0012 20.8 2.3 26 11-39 3-28 (55)
7 PF09610 Myco_arth_vir_N: Myco 26.1 49 0.0011 19.0 1.4 17 10-26 9-25 (33)
8 KOG2303 Predicted NAD synthase 23.7 1.8E+02 0.004 26.7 5.2 70 11-85 489-558 (706)
9 COG4704 Uncharacterized protei 21.3 57 0.0012 24.7 1.4 22 6-27 3-24 (151)
10 PF09628 YvfG: YvfG protein; 19.9 65 0.0014 21.2 1.3 8 81-88 28-35 (68)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=100.00 E-value=1.6e-35 Score=202.36 Aligned_cols=85 Identities=53% Similarity=1.036 Sum_probs=82.8
Q ss_pred cceeecCCCChHHHHHHHHHhhcCCCCCcccCCCCCcCCCCChhhhHhHHHHHHHHhhcCCCCCCccCceeEEEecCCCC
Q 033379 32 QWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITELDPSH 111 (120)
Q Consensus 32 ~wCV~k~~~~~~~l~~~ldyaCg~~~dCs~I~~~g~Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~l~t~dps~ 111 (120)
+|||+|+++++++||++|||||++++||++|++||+||+|+++++|||||||+|||++++.+++|||+|.|+++++||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 59999999999999999999999769999999999999999999999999999999999999999999999999999999
Q ss_pred Cceee
Q 033379 112 NSCRY 116 (120)
Q Consensus 112 ~sC~f 116 (120)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.94 E-value=1.3e-27 Score=161.42 Aligned_cols=72 Identities=46% Similarity=0.875 Sum_probs=61.7
Q ss_pred cceeecCCCChHHHHHHHHHhhcC-CCCCcccCCCCC-----cCCCCChhhhHhHHHHHHHHhhcCCCCCCccCceeE
Q 033379 32 QWCIADEQTPDDELQAAMDWACGN-GADCSKIQMNQP-----CYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAV 103 (120)
Q Consensus 32 ~wCV~k~~~~~~~l~~~ldyaCg~-~~dCs~I~~~g~-----Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~ 103 (120)
+|||+++++++++|+++|||||++ ++||++|++||+ .|++|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999998 599999999997 577778899999999999999999999999999986
No 3
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=40.36 E-value=42 Score=25.73 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=12.0
Q ss_pred CCCcccCCCCCcCC
Q 033379 57 ADCSKIQMNQPCYY 70 (120)
Q Consensus 57 ~dCs~I~~~g~Cy~ 70 (120)
..|.+|..++.||.
T Consensus 75 ~tC~GI~~~~~Clt 88 (161)
T PHA02673 75 RTCDGINAGNKCLT 88 (161)
T ss_pred CcCCCcccCCeeEE
Confidence 67999999999954
No 4
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=38.67 E-value=14 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcCCCCCCccceeecCCCC
Q 033379 12 IMLALLATSVITPKSNGENEQWCIADEQTP 41 (120)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~wCV~k~~~~ 41 (120)
|.|++-.++|..+..+-..+.||+-...++
T Consensus 10 Ls~~ln~LAL~~S~tA~~sSyWC~GTqKVp 39 (118)
T PF07803_consen 10 LSLILNLLALAFSTTALLSSYWCEGTQKVP 39 (118)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccceecC
Confidence 444455555555567778899999877764
No 5
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=33.77 E-value=56 Score=20.91 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH---hhcCCCCCCccceeecCCCChHHH
Q 033379 11 RIMLALLATSV---ITPKSNGENEQWCIADEQTPDDEL 45 (120)
Q Consensus 11 ~~~~~~~~~~~---~~~~~~~~~~~wCV~k~~~~~~~l 45 (120)
.++|++.+++- -||.++++-+..||..+-.|++++
T Consensus 6 kf~lv~imlaqllsctpsapyeikspcvs~didd~s~l 43 (60)
T PF10913_consen 6 KFLLVLIMLAQLLSCTPSAPYEIKSPCVSADIDDNSSL 43 (60)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccCCccccccCCCccc
Confidence 34444444443 456688999999998765555544
No 6
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=30.31 E-value=54 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCccceeecCC
Q 033379 11 RIMLALLATSVITPKSNGENEQWCIADEQ 39 (120)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~wCV~k~~ 39 (120)
|++++.++++++ +..-..+|=|..|+
T Consensus 3 ~i~~~~~~~~~~---~~~a~AQWvV~DP~ 28 (55)
T PF13605_consen 3 KILMLCVACLLL---AGPARAQWVVTDPG 28 (55)
T ss_pred chHHHHHHHHhc---CCcceeEEEEeCch
Confidence 566666666644 77888999998776
No 7
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=26.13 E-value=49 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhcCC
Q 033379 10 LRIMLALLATSVITPKS 26 (120)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (120)
-||+.+.+++.++++.+
T Consensus 9 ~~Il~la~~a~l~as~s 25 (33)
T PF09610_consen 9 IKILTLALTASLLASGS 25 (33)
T ss_pred hhhhhHHHHHHHHHcee
Confidence 47888888888887543
No 8
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=23.69 E-value=1.8e+02 Score=26.67 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCccceeecCCCChHHHHHHHHHhhcCCCCCcccCCCCCcCCCCChhhhHhHHHHHH
Q 033379 11 RIMLALLATSVITPKSNGENEQWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSY 85 (120)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~wCV~k~~~~~~~l~~~ldyaCg~~~dCs~I~~~g~Cy~p~t~~~~aSyAfN~Y 85 (120)
|..|.-+.+-++.-+-...+.+-=.-..++|+.-.+-+-.|-|+. +|-.||.+-..- +++.-+.||-..|
T Consensus 489 RMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSS-ADINPIGgISK~----DLr~Fl~~a~~~~ 558 (706)
T KOG2303|consen 489 RMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSS-ADINPIGGISKT----DLRRFLQYAKEKF 558 (706)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccc-cccCCccCccHH----HHHHHHHHHHHhc
Confidence 444444444444434555667777778889999999999999995 898888776543 6888888887776
No 9
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.30 E-value=57 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC
Q 033379 6 SIVLLRIMLALLATSVITPKSN 27 (120)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (120)
+|-+.|+.||+.+++++.+.+.
T Consensus 3 ~~~~~~l~Ll~aa~sL~~~~aa 24 (151)
T COG4704 3 NISRRRLFLLAAALSLVSLKAA 24 (151)
T ss_pred cHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788888888888776643
No 10
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=19.95 E-value=65 Score=21.16 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=0.0
Q ss_pred HHHHHHHh
Q 033379 81 AFNSYFQK 88 (120)
Q Consensus 81 AfN~YYq~ 88 (120)
|||+||+.
T Consensus 28 AmNaYYr~ 35 (68)
T PF09628_consen 28 AMNAYYRS 35 (68)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Done!