Query 033379
Match_columns 120
No_of_seqs 109 out of 716
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 22:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 3.8E-39 1.3E-43 226.2 11.1 94 27-120 7-100 (101)
2 2w61_A GAS2P, glycolipid-ancho 99.9 4.9E-27 1.7E-31 202.6 4.0 86 31-118 396-493 (555)
3 2v33_A E1 envelope glycoprotei 47.7 5.5 0.00019 26.9 0.8 22 97-118 20-41 (91)
4 1czf_A Polygalacturonase II; b 26.1 25 0.00086 28.1 1.5 22 29-54 25-46 (362)
5 3j0f_E E1 envelope glycoprotei 23.0 41 0.0014 28.2 2.2 22 97-118 311-332 (439)
6 2gsv_A Hypothetical protein YV 20.0 40 0.0014 21.7 1.3 10 80-89 28-37 (80)
7 3j0c_A E1 envelope glycoprotei 19.6 42 0.0014 28.2 1.6 22 97-118 311-332 (442)
8 2yew_B E1 envelope glycoprotei 18.3 70 0.0024 26.7 2.6 22 97-118 305-326 (427)
9 1i9w_A Fusion protein E1; enve 17.9 62 0.0021 26.7 2.2 22 97-118 311-332 (390)
10 3muu_A Structural polyprotein; 15.7 64 0.0022 28.9 1.9 22 97-118 671-692 (750)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=3.8e-39 Score=226.15 Aligned_cols=94 Identities=31% Similarity=0.696 Sum_probs=89.6
Q ss_pred CCCCccceeecCCCChHHHHHHHHHhhcCCCCCcccCCCCCcCCCCChhhhHhHHHHHHHHhhcCCCCCCccCceeEEEe
Q 033379 27 NGENEQWCIADEQTPDDELQAAMDWACGNGADCSKIQMNQPCYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGAAVITE 106 (120)
Q Consensus 27 ~~~~~~wCV~k~~~~~~~l~~~ldyaCg~~~dCs~I~~~g~Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~l~t 106 (120)
...+++|||+|+++++++||++|||||++++||++|++||+||+|+++++|+|||||+|||++++..++|||+|+|+|++
T Consensus 7 ~~~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~ 86 (101)
T 2jon_A 7 PKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTN 86 (101)
T ss_dssp CCCCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEES
T ss_pred CCCCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEee
Confidence 35578999999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeccCC
Q 033379 107 LDPSHNSCRYEFIP 120 (120)
Q Consensus 107 ~dps~~sC~f~~~~ 120 (120)
+|||+++|+|+++.
T Consensus 87 ~dPS~g~C~f~~~~ 100 (101)
T 2jon_A 87 TNPSYGACNFPSGS 100 (101)
T ss_dssp SCCCCSSSCCCCSC
T ss_pred cCCCCCceecCCCC
Confidence 99999999999763
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.93 E-value=4.9e-27 Score=202.56 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=82.2
Q ss_pred ccceeecCC-CChHHHHHHHHHhhcCCCCCcccCCCCC-----cCCCCChhhhHhHHHHHHHHhhcCCCCCCccCce---
Q 033379 31 EQWCIADEQ-TPDDELQAAMDWACGNGADCSKIQMNQP-----CYYPNTTRDHASYAFNSYFQKFKNKGGSCYFKGA--- 101 (120)
Q Consensus 31 ~~wCV~k~~-~~~~~l~~~ldyaCg~~~dCs~I~~~g~-----Cy~p~t~~~~aSyAfN~YYq~~~~~~~aCdF~G~--- 101 (120)
++|||++++ +++++||++||||||+ +||++|++||+ ||+||++++|||||||+|||++++..++|||+|+
T Consensus 396 ~~~Cv~~~~~~~~~~l~~~~~yaC~~-~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~~~ 474 (555)
T 2w61_A 396 ILPCEIVPFGAESGKYEEYFSYLCSK-VDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKNVY 474 (555)
T ss_dssp HCSEEECCTTCCGGGHHHHHHHHTTT-SCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTTEE
T ss_pred CCeeecCCCCCCHHHHHHHHHHHhCc-CCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 589999999 9999999999999997 89999999999 6999999999999999999999999999999999
Q ss_pred ---eEEEecCCCCCceeecc
Q 033379 102 ---AVITELDPSHNSCRYEF 118 (120)
Q Consensus 102 ---A~l~t~dps~~sC~f~~ 118 (120)
|+++ ++||+++|+|..
T Consensus 475 ~~~a~~~-~~~s~~~C~~~~ 493 (555)
T 2w61_A 475 FNLESLQ-PLTSESICKNVF 493 (555)
T ss_dssp ECGGGGS-CCCTTCTTHHHH
T ss_pred ccceEEE-eCCCCCchHhHH
Confidence 9999 789999999864
No 3
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=47.72 E-value=5.5 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.5
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 20 DFGGvatl~Y~a~k~GkCaVHs 41 (91)
T 2v33_A 20 DFGGVLTLTYKTNKNGDCSVHS 41 (91)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CCCCeEEEEEecCCCccceeec
Confidence 8999999998777778897765
No 4
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3
Probab=26.08 E-value=25 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=13.5
Q ss_pred CCccceeecCCCChHHHHHHHHHhhc
Q 033379 29 ENEQWCIADEQTPDDELQAAMDWACG 54 (120)
Q Consensus 29 ~~~~wCV~k~~~~~~~l~~~ldyaCg 54 (120)
.....|.+++ ..++|++++ +|.
T Consensus 25 ~~~~~Ctv~~---~~aiq~ai~-~c~ 46 (362)
T 1czf_A 25 EARDSCTFTT---AAAAKAGKA-KCS 46 (362)
T ss_dssp ---CEEEESS---HHHHHHHGG-GCS
T ss_pred cCCCEEEECC---HHHHHHHHH-Hhh
Confidence 4446799988 467888764 354
No 5
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=22.95 E-value=41 Score=28.17 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.8
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (439)
T 3j0f_E 311 DFGGMATLQYVSDREGQCPVHS 332 (439)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 7999999998877778998765
No 6
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=20.04 E-value=40 Score=21.71 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=7.9
Q ss_pred HHHHHHHHhh
Q 033379 80 YAFNSYFQKF 89 (120)
Q Consensus 80 yAfN~YYq~~ 89 (120)
-|||+||+.-
T Consensus 28 hAmNaYYrsV 37 (80)
T 2gsv_A 28 HAMNSYYRSV 37 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999863
No 7
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=19.60 E-value=42 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.9
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (442)
T 3j0c_A 311 DFGGIATVKYSASKSGKCAVHV 332 (442)
T ss_dssp SCCEEEEEEEEESSCEEEEEEC
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999998777778998765
No 8
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=18.25 E-value=70 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.9
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 305 DfGGvatl~Y~~~k~GkCaVHS 326 (427)
T 2yew_B 305 DFGGVASISYTSNKVGKCAISS 326 (427)
T ss_dssp SSCCEEEEEEECCCCBCCCCCC
T ss_pred CcCceEEEEEecCCCccCcccc
Confidence 8999999998877779998764
No 9
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=17.92 E-value=62 Score=26.71 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.4
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvat~~Y~~~k~GkCaVHs 332 (390)
T 1i9w_A 311 DFGGVLTLTYKTNKNGDCSVHS 332 (390)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 7999999998777778897765
No 10
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=15.71 E-value=64 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.8
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 671 DfGG~atl~y~~~k~GkCavHs 692 (750)
T 3muu_A 671 DFGGMATLQYVSDREGQCPVHS 692 (750)
T ss_dssp SSCEEEEEEEEESSCCCEECEE
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 6888888876666667776654
Done!