Query 033379
Match_columns 120
No_of_seqs 109 out of 716
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 22:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033379.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033379hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v33a1 b.1.18.4 (A:293-382) F 48.8 2.4 0.00018 26.9 0.8 22 97-118 19-40 (90)
2 d2gsva1 a.23.7.1 (A:3-69) Hypo 23.5 15 0.0011 21.6 1.3 10 80-89 26-35 (67)
3 d1ut3a_ g.9.1.1 (A:) Beta-defe 15.4 11 0.00082 19.6 -0.6 9 112-120 15-23 (38)
4 d1ijda_ f.3.1.1 (A:) Light-har 14.1 11 0.00081 20.9 -0.9 15 29-43 3-17 (46)
5 d2dlka1 g.37.1.1 (A:8-37) Zinc 13.8 26 0.0019 17.4 0.6 12 95-106 2-13 (30)
6 d1nkza_ f.3.1.1 (A:) Light-har 13.5 15 0.0011 20.9 -0.5 15 29-43 3-17 (53)
7 d1wqji1 g.1.1.1 (I:2-63) Insul 13.0 94 0.0069 17.7 3.2 13 43-55 7-19 (62)
8 d1pb5a_ g.65.1.1 (A:) Neurogen 12.9 15 0.0011 19.2 -0.6 11 50-60 24-35 (35)
9 d1iq0a1 a.27.1.1 (A:467-592) A 12.0 50 0.0036 20.5 1.8 27 74-100 65-91 (126)
10 d2v5pc1 g.1.1.1 (C:6-63) Insul 11.0 1.3E+02 0.0094 16.9 3.3 13 43-55 6-18 (58)
No 1
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=48.77 E-value=2.4 Score=26.94 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.4
Q ss_pred ccCceeEEEecCCCCCceeecc
Q 033379 97 YFKGAAVITELDPSHNSCRYEF 118 (120)
Q Consensus 97 dF~G~A~l~t~dps~~sC~f~~ 118 (120)
||+|.|+|+......|.|..++
T Consensus 19 DfGGvatl~Y~a~k~GkCaVHs 40 (90)
T d2v33a1 19 DFGGVLTLTYKTNKNGDCSVHS 40 (90)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CcCCeEEEEEecCCCccceeEc
Confidence 8999999998777778897764
No 2
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=23.49 E-value=15 Score=21.64 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=8.0
Q ss_pred HHHHHHHHhh
Q 033379 80 YAFNSYFQKF 89 (120)
Q Consensus 80 yAfN~YYq~~ 89 (120)
-|||+||+.-
T Consensus 26 hAmNaYYrsV 35 (67)
T d2gsva1 26 HAMNSYYRSV 35 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999863
No 3
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=15.42 E-value=11 Score=19.65 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=6.5
Q ss_pred CceeeccCC
Q 033379 112 NSCRYEFIP 120 (120)
Q Consensus 112 ~sC~f~~~~ 120 (120)
+.|+||+.|
T Consensus 15 grcrfpsip 23 (38)
T d1ut3a_ 15 GRCRFPSIP 23 (38)
T ss_dssp SSCCTTEEE
T ss_pred ccccCCCcc
Confidence 668888765
No 4
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=14.14 E-value=11 Score=20.88 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=11.6
Q ss_pred CCccceeecCCCChH
Q 033379 29 ENEQWCIADEQTPDD 43 (120)
Q Consensus 29 ~~~~wCV~k~~~~~~ 43 (120)
+++.|||+||.+-..
T Consensus 3 ~gkiW~VV~PtvG~P 17 (46)
T d1ijda_ 3 QGKIWTVVPPAFGLP 17 (46)
T ss_dssp TGGGGGTSCHHHHHH
T ss_pred CceEEEEECCCcCch
Confidence 578999999986433
No 5
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.84 E-value=26 Score=17.40 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.1
Q ss_pred CCccCceeEEEe
Q 033379 95 SCYFKGAAVITE 106 (120)
Q Consensus 95 aCdF~G~A~l~t 106 (120)
.|||.|-+.|-+
T Consensus 2 ~cdf~gc~kifs 13 (30)
T d2dlka1 2 PCDFPGCGRIFS 13 (30)
T ss_dssp ECSSTTTCCEES
T ss_pred CCCCCCchhhhc
Confidence 499999887653
No 6
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=13.49 E-value=15 Score=20.91 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=11.5
Q ss_pred CCccceeecCCCChH
Q 033379 29 ENEQWCIADEQTPDD 43 (120)
Q Consensus 29 ~~~~wCV~k~~~~~~ 43 (120)
+++.|||+||.+-..
T Consensus 3 qgkiW~VV~PtVG~P 17 (53)
T d1nkza_ 3 QGKIWTVVNPAIGIP 17 (53)
T ss_dssp CTTGGGTSCHHHHHH
T ss_pred CceEEEEECCCcCch
Confidence 678999999986433
No 7
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.02 E-value=94 Score=17.71 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcC
Q 033379 43 DELQAAMDWACGN 55 (120)
Q Consensus 43 ~~l~~~ldyaCg~ 55 (120)
..|-++|-++||.
T Consensus 7 s~LvdaL~~VCG~ 19 (62)
T d1wqji1 7 AELVDALQFVCGD 19 (62)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcc
Confidence 5688899999997
No 8
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.88 E-value=15 Score=19.21 Aligned_cols=11 Identities=64% Similarity=1.326 Sum_probs=6.4
Q ss_pred HHhhcC-CCCCc
Q 033379 50 DWACGN-GADCS 60 (120)
Q Consensus 50 dyaCg~-~~dCs 60 (120)
++|||. +.||+
T Consensus 24 nhaCgWDgGDCS 35 (35)
T d1pb5a_ 24 NHACGWDGGDCS 35 (35)
T ss_dssp STTTTGGGGSCC
T ss_pred ccccCCCCCCCC
Confidence 356666 46664
No 9
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=11.99 E-value=50 Score=20.53 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=18.3
Q ss_pred hhhhHhHHHHHHHHhhcCCCCCCccCc
Q 033379 74 TRDHASYAFNSYFQKFKNKGGSCYFKG 100 (120)
Q Consensus 74 ~~~~aSyAfN~YYq~~~~~~~aCdF~G 100 (120)
--..++=+||+||+..+.....+.+.+
T Consensus 65 yl~~La~~F~~fY~~~~~~~~~~~i~~ 91 (126)
T d1iq0a1 65 YLLDLAASWNAYYNARENGQPATPVLT 91 (126)
T ss_dssp HHHHHHHHHHHHHHCEETTEESSCSTT
T ss_pred HHHHHHHHHHHHHHhcccccccccccC
Confidence 344577789999998776555555443
No 10
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=1.3e+02 Score=16.91 Aligned_cols=13 Identities=31% Similarity=0.877 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcC
Q 033379 43 DELQAAMDWACGN 55 (120)
Q Consensus 43 ~~l~~~ldyaCg~ 55 (120)
+.|-++|-++||.
T Consensus 6 s~LVdaL~~VCg~ 18 (58)
T d2v5pc1 6 GELVDTLQFVCGD 18 (58)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcC
Confidence 5678899999997
Done!