BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033380
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K77|A Chain A, Crystal Structure Of Ec1530, A Putative Oxygenase From
           Escherichia Coli
          Length = 260

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 10  WLHSRVDVNGYEEYCGTEYRSAGCTEE 36
           WL    D  GY+ + G EY+  G TEE
Sbjct: 223 WLFRLFDEVGYQGWIGCEYKPRGLTEE 249


>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
          Protein
 pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
          Protein
 pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
          Protein
          Length = 154

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 16 DVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLL 75
          D N Y+ Y  T    A       +VE  L++G +  ++    D  G   L ++A + HL 
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV----DTNGTTPLHLAASLGHLE 82

Query: 76 I 76
          I
Sbjct: 83 I 83


>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
          Protein
 pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
          Protein
          Length = 166

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 16 DVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLL 75
          DVN  + Y  T    A       +VE  L++G +  +L    D  G   L ++AK  HL 
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL----DFSGSTPLHLAAKRGHLE 94

Query: 76 I 76
          I
Sbjct: 95 I 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,969,610
Number of Sequences: 62578
Number of extensions: 146907
Number of successful extensions: 175
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)