BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033380
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0AC83|LPTD_ALHEH LPS-assembly protein LptD OS=Alkalilimnicola ehrlichei (strain
           MLHE-1) GN=lptD PE=3 SV=1
          Length = 757

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 9   QWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEE--ESLMLEGDIGGGG 63
           +WL+S  D N  E   G EYR+  C    ++  RS +  G E   S+ML+ +  G G
Sbjct: 680 RWLYSLADDNSLETVGGLEYRTC-CWRVRAMGRRSFEGAGAEPDTSIMLQFEFTGLG 735


>sp|O46639|TRFR_BOVIN Thyrotropin-releasing hormone receptor OS=Bos taurus GN=TRHR PE=3
           SV=1
          Length = 398

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 64  CLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIK 118
           C+++++ +  ++ +LMS+KF +      N     +++PV K +  +V+  Y VIK
Sbjct: 308 CIYLNSAINPVIYNLMSQKFRAAFRKLCN----CKQKPVEKPANYSVALSYSVIK 358


>sp|Q28596|TRFR_SHEEP Thyrotropin-releasing hormone receptor OS=Ovis aries GN=TRHR PE=2
           SV=1
          Length = 398

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 64  CLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIK 118
           C+++++ +  ++ +LMS+KF +      N     +++PV K +  +V+  Y VIK
Sbjct: 308 CIYLNSAINPVIYNLMSQKFRAAFRKLCN----CKQKPVEKPANYSVALNYSVIK 358


>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
           OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
          Length = 704

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 37  YSVVERSLQHGGE-EESLMLEGDIGGGGCLWISAKVWHLLID 77
           Y+ V R    G E E++L L  ++ G GC W S   W +LID
Sbjct: 180 YNTVIRGFCEGKELEKALELANEMKGSGCSW-SLVTWGILID 220


>sp|Q18JV4|SYM_HALWD Methionine--tRNA ligase OS=Haloquadratum walsbyi (strain DSM 16790)
           GN=metG PE=3 SV=1
          Length = 741

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 1   MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTE 35
           +A+ P+  QWL  R  VNG   YCG   R   C E
Sbjct: 148 VAYDPAADQWLPDRF-VNGTCPYCGAHARGDECDE 181


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,047,944
Number of Sequences: 539616
Number of extensions: 1729385
Number of successful extensions: 2618
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2617
Number of HSP's gapped (non-prelim): 9
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)